AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48788

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48788.t1 MTR_4g029540 97.297 296 8 0 1 296 1 296 0.0 594
MS.gene48788.t1 MTR_8g006470 45.791 297 135 5 1 292 1 276 9.32e-68 213
MS.gene48788.t1 MTR_3g052450 49.219 128 54 2 10 127 40 166 2.16e-37 139
MS.gene48788.t1 MTR_3g052430 54.206 107 48 1 10 116 41 146 2.05e-36 136
MS.gene48788.t1 MTR_1g021230 54.386 114 50 2 10 122 57 169 3.10e-36 135
MS.gene48788.t1 MTR_8g042410 45.638 149 74 4 2 145 25 171 1.83e-35 134
MS.gene48788.t1 MTR_5g029840 42.581 155 82 4 10 159 12 164 7.96e-35 129
MS.gene48788.t1 MTR_1g085640 47.518 141 68 4 10 147 12 149 9.40e-34 127
MS.gene48788.t1 MTR_7g115650 51.852 108 51 1 6 113 8 114 1.03e-33 122
MS.gene48788.t1 MTR_8g017500 51.754 114 54 1 10 123 12 124 1.16e-33 126
MS.gene48788.t1 MTR_3g011610 49.533 107 53 1 10 116 37 142 1.18e-33 129
MS.gene48788.t1 MTR_5g007370 53.846 104 47 1 10 113 12 114 4.84e-33 123
MS.gene48788.t1 MTR_7g110830 55.140 107 47 1 10 116 12 117 1.23e-32 124
MS.gene48788.t1 MTR_4g082230 43.796 137 75 2 6 141 8 143 1.25e-32 124
MS.gene48788.t1 MTR_2g089620 47.541 122 60 3 6 124 8 128 1.35e-32 122
MS.gene48788.t1 MTR_8g017440 49.180 122 61 1 10 131 12 132 1.38e-32 123
MS.gene48788.t1 MTR_1g062940 53.211 109 49 2 8 115 4 111 2.13e-32 119
MS.gene48788.t1 MTR_3g074520 50.962 104 50 1 10 113 12 114 3.12e-32 122
MS.gene48788.t1 MTR_6g012690 50.000 104 51 1 10 113 12 114 4.16e-32 122
MS.gene48788.t1 MTR_2g011660 50.000 108 52 2 10 116 13 119 5.58e-32 121
MS.gene48788.t1 MTR_0140s0030 49.074 108 54 1 6 113 9 115 6.41e-32 121
MS.gene48788.t1 MTR_0489s0020 49.074 108 54 1 6 113 9 115 6.41e-32 121
MS.gene48788.t1 MTR_4g105130 40.994 161 90 3 10 166 12 171 7.16e-32 121
MS.gene48788.t1 MTR_7g010210 49.038 104 52 1 10 113 12 114 1.19e-31 119
MS.gene48788.t1 MTR_4g082290 43.066 137 76 2 6 141 8 143 1.44e-31 121
MS.gene48788.t1 MTR_4g478180 50.000 104 51 1 10 113 13 115 1.47e-31 120
MS.gene48788.t1 MTR_4g094982 56.863 102 42 2 12 113 5 104 1.48e-31 119
MS.gene48788.t1 MTR_8g017540 50.877 114 55 1 10 123 58 170 1.60e-31 121
MS.gene48788.t1 MTR_7g011170 50.000 108 53 1 6 113 8 114 1.71e-31 119
MS.gene48788.t1 MTR_7g010210 49.038 104 52 1 10 113 12 114 1.92e-31 119
MS.gene48788.t1 MTR_7g035075 36.095 169 93 4 10 170 14 175 1.99e-31 116
MS.gene48788.t1 MTR_7g096930 46.903 113 58 2 6 117 8 119 2.52e-31 118
MS.gene48788.t1 MTR_7g087130 41.791 134 77 1 6 139 8 140 2.68e-31 119
MS.gene48788.t1 MTR_2g096380 33.188 229 141 4 10 233 6 227 2.69e-31 117
MS.gene48788.t1 MTR_1g085040 44.231 156 80 4 10 161 12 164 2.76e-31 120
MS.gene48788.t1 MTR_2g099740 50.000 114 56 1 10 123 12 124 3.28e-31 120
MS.gene48788.t1 MTR_3g039990 47.321 112 57 2 6 116 9 119 3.73e-31 118
MS.gene48788.t1 MTR_1g086530 47.664 107 55 1 10 116 33 138 3.79e-31 117
MS.gene48788.t1 MTR_8g017340 55.660 106 43 3 10 113 12 115 3.89e-31 121
MS.gene48788.t1 MTR_2g064160 51.923 104 49 1 10 113 11 113 5.30e-31 118
MS.gene48788.t1 MTR_2g088170 55.455 110 48 1 7 116 26 134 5.57e-31 120
MS.gene48788.t1 MTR_5g010020 51.000 100 48 1 10 109 12 110 6.38e-31 118
MS.gene48788.t1 MTR_8g017390 50.862 116 53 3 10 123 12 125 7.43e-31 120
MS.gene48788.t1 MTR_4g091490 49.074 108 53 2 10 116 13 119 7.74e-31 119
MS.gene48788.t1 MTR_1g043050 43.077 130 72 2 6 134 8 136 8.84e-31 116
MS.gene48788.t1 MTR_6g006030 46.154 104 55 1 10 113 14 116 1.54e-30 114
MS.gene48788.t1 MTR_1g073170 43.443 122 64 2 11 132 21 137 2.33e-30 115
MS.gene48788.t1 MTR_5g088080 32.692 260 158 10 11 265 13 260 2.62e-30 115
MS.gene48788.t1 MTR_5g088150 32.692 260 158 10 11 265 13 260 2.62e-30 115
MS.gene48788.t1 MTR_5g488210 32.692 260 158 10 11 265 13 260 2.62e-30 115
MS.gene48788.t1 MTR_5g016510 50.000 126 59 3 12 135 5 128 2.80e-30 116
MS.gene48788.t1 MTR_6g012180 49.000 100 50 1 10 109 12 110 3.06e-30 116
MS.gene48788.t1 MTR_7g076740 40.940 149 83 3 10 154 12 159 3.62e-30 115
MS.gene48788.t1 MTR_1g043080 46.296 108 57 1 6 113 8 114 4.59e-30 114
MS.gene48788.t1 MTR_1g086510 45.370 108 57 2 3 110 15 120 5.16e-30 114
MS.gene48788.t1 MTR_2g097910 46.957 115 60 1 10 124 20 133 6.65e-30 115
MS.gene48788.t1 MTR_8g098860 46.789 109 57 1 10 118 12 119 7.36e-30 115
MS.gene48788.t1 MTR_1g100653 45.946 111 59 1 6 116 8 117 8.38e-30 114
MS.gene48788.t1 MTR_2g067420 48.571 105 53 1 6 110 10 113 8.67e-30 115
MS.gene48788.t1 MTR_1g112760 50.962 104 50 1 10 113 13 115 9.51e-30 112
MS.gene48788.t1 MTR_8g017350 53.774 106 45 3 10 113 12 115 1.02e-29 118
MS.gene48788.t1 MTR_5g488170 35.096 208 128 6 11 217 13 214 1.35e-29 112
MS.gene48788.t1 MTR_3g077110 51.923 104 49 1 10 113 12 114 1.40e-29 115
MS.gene48788.t1 MTR_5g088640 46.341 123 63 3 11 132 13 133 1.54e-29 113
MS.gene48788.t1 MTR_0251s0050 48.624 109 54 2 10 117 13 120 2.56e-29 112
MS.gene48788.t1 MTR_1g100667 52.427 103 48 1 11 113 14 115 2.59e-29 112
MS.gene48788.t1 MTR_8g095390 45.528 123 64 2 6 128 8 127 3.10e-29 113
MS.gene48788.t1 MTR_4g057635 38.144 194 90 7 10 193 12 185 3.43e-29 113
MS.gene48788.t1 MTR_5g079670 44.355 124 65 2 10 133 11 130 5.20e-29 110
MS.gene48788.t1 MTR_8g031360 52.381 105 48 2 10 113 13 116 5.47e-29 112
MS.gene48788.t1 MTR_1g110460 41.441 111 64 1 6 116 22 131 5.69e-29 112
MS.gene48788.t1 MTR_1g076150 47.222 108 56 1 6 113 8 114 6.29e-29 111
MS.gene48788.t1 MTR_1g045610 46.729 107 56 1 11 117 22 127 7.20e-29 111
MS.gene48788.t1 MTR_4g063100 48.246 114 56 2 11 122 8 120 1.08e-28 110
MS.gene48788.t1 MTR_7g111290 53.535 99 45 1 10 108 12 109 1.12e-28 113
MS.gene48788.t1 MTR_0008s0280 44.643 112 61 1 5 116 7 117 1.15e-28 110
MS.gene48788.t1 MTR_0063s0090 45.455 121 63 2 5 123 7 126 1.17e-28 110
MS.gene48788.t1 MTR_4g065017 45.833 120 64 1 10 129 17 135 1.20e-28 112
MS.gene48788.t1 MTR_4g073420 42.188 128 71 2 6 131 8 134 1.48e-28 111
MS.gene48788.t1 MTR_7g102110 47.706 109 55 2 6 113 8 115 1.91e-28 110
MS.gene48788.t1 MTR_3g461490 48.148 108 55 1 6 113 8 114 2.03e-28 111
MS.gene48788.t1 MTR_5g042030 45.833 120 61 3 10 126 7 125 2.38e-28 110
MS.gene48788.t1 MTR_2g095520 49.524 105 51 2 6 109 8 111 2.43e-28 111
MS.gene48788.t1 MTR_5g088610 50.467 107 51 2 11 116 10 115 3.32e-28 111
MS.gene48788.t1 MTR_4g485530 50.000 104 50 2 12 114 14 116 3.65e-28 107
MS.gene48788.t1 MTR_5g062790 49.533 107 52 2 11 116 10 115 3.74e-28 110
MS.gene48788.t1 MTR_8g027345 46.789 109 56 2 10 117 12 119 4.36e-28 110
MS.gene48788.t1 MTR_0008s0390 43.846 130 67 3 10 138 13 137 7.53e-28 108
MS.gene48788.t1 MTR_2g089450 38.667 150 90 2 10 158 12 160 8.54e-28 108
MS.gene48788.t1 MTR_5g078140 44.186 129 65 2 10 138 12 133 1.43e-27 109
MS.gene48788.t1 MTR_4g019370 50.000 102 49 2 12 113 38 137 1.51e-27 109
MS.gene48788.t1 MTR_3g028740 50.000 104 51 1 10 113 22 124 1.70e-27 109
MS.gene48788.t1 MTR_3g097450 43.089 123 67 2 6 128 8 127 1.84e-27 108
MS.gene48788.t1 MTR_3g065440 49.038 104 52 1 10 113 12 114 2.69e-27 108
MS.gene48788.t1 MTR_1g017000 41.667 132 64 3 10 129 12 142 3.21e-27 107
MS.gene48788.t1 MTR_6g090405 45.872 109 57 2 6 113 8 115 3.57e-27 106
MS.gene48788.t1 MTR_6g055910 46.087 115 61 1 1 115 5 118 5.18e-27 107
MS.gene48788.t1 MTR_1g017140 47.706 109 55 2 6 113 8 115 5.54e-27 108
MS.gene48788.t1 MTR_6g009430 43.511 131 70 3 10 137 12 141 6.68e-27 107
MS.gene48788.t1 MTR_2g034790 40.288 139 79 3 6 142 8 144 9.73e-27 107
MS.gene48788.t1 MTR_3g101290 50.980 102 48 2 12 113 37 136 1.06e-26 104
MS.gene48788.t1 MTR_0008s0470 46.154 104 55 1 10 113 13 115 1.74e-26 105
MS.gene48788.t1 MTR_1g083630 47.748 111 56 2 10 119 12 121 2.02e-26 109
MS.gene48788.t1 MTR_4g121460 43.269 104 58 1 10 113 12 114 3.01e-26 106
MS.gene48788.t1 MTR_4g102380 47.115 104 54 1 10 113 12 114 4.18e-26 104
MS.gene48788.t1 MTR_5g014990 46.789 109 56 2 6 113 8 115 4.23e-26 105
MS.gene48788.t1 MTR_5g049190 47.788 113 53 4 10 119 17 126 5.21e-26 103
MS.gene48788.t1 MTR_4g100720 46.000 100 53 1 10 109 13 111 7.50e-26 101
MS.gene48788.t1 MTR_7g117730 41.667 108 62 1 10 117 12 118 1.24e-25 102
MS.gene48788.t1 MTR_3g103570 44.954 109 58 2 6 113 8 115 1.27e-25 104
MS.gene48788.t1 MTR_4g097570 47.115 104 53 2 6 108 8 110 1.75e-25 103
MS.gene48788.t1 MTR_3g083540 42.373 118 64 2 10 124 41 157 1.85e-25 103
MS.gene48788.t1 MTR_2g089420 44.037 109 59 2 10 117 11 118 3.44e-25 104
MS.gene48788.t1 MTR_3g463400 50.980 102 48 2 12 113 133 232 5.19e-25 104
MS.gene48788.t1 MTR_6g015455 55.208 96 41 2 12 107 5 98 1.48e-24 103
MS.gene48788.t1 MTR_4g097570 46.667 105 53 3 6 108 8 111 2.17e-24 100
MS.gene48788.t1 MTR_8g020490 45.000 100 54 1 10 109 8 106 2.83e-24 99.0
MS.gene48788.t1 MTR_4g128670 45.714 105 55 2 6 109 8 111 3.45e-24 100
MS.gene48788.t1 MTR_4g125520 36.220 127 76 2 10 132 12 137 3.47e-24 99.8
MS.gene48788.t1 MTR_1g026870 45.872 109 57 2 10 118 83 189 4.56e-24 102
MS.gene48788.t1 MTR_2g033170 44.231 104 57 1 10 113 24 126 7.44e-24 99.4
MS.gene48788.t1 MTR_3g110028 44.954 109 58 2 10 118 83 189 1.11e-23 101
MS.gene48788.t1 MTR_8g060940 45.098 102 55 1 8 109 5 105 1.30e-23 97.1
MS.gene48788.t1 MTR_4g088015 45.192 104 55 2 10 113 219 320 2.01e-23 99.8
MS.gene48788.t1 MTR_5g070020 45.098 102 54 2 12 113 122 221 2.60e-23 98.2
MS.gene48788.t1 MTR_7g109320 48.148 108 55 1 6 113 8 114 4.12e-23 97.8
MS.gene48788.t1 MTR_4g105660 46.154 104 54 2 10 113 178 279 5.41e-23 98.2
MS.gene48788.t1 MTR_4g123040 42.056 107 61 1 10 116 24 129 5.89e-23 96.7
MS.gene48788.t1 MTR_5g078950 45.000 100 54 1 10 109 7 105 6.36e-23 95.5
MS.gene48788.t1 MTR_7g061330 48.077 104 52 2 10 113 111 212 8.70e-23 98.6
MS.gene48788.t1 MTR_7g461410 48.077 104 52 2 10 113 111 212 8.70e-23 98.6
MS.gene48788.t1 MTR_7g061330 48.077 104 52 2 10 113 75 176 1.15e-22 97.8
MS.gene48788.t1 MTR_2g096380 32.821 195 119 4 44 233 21 208 1.19e-22 94.0
MS.gene48788.t1 MTR_5g082910 48.077 104 52 2 6 109 13 114 1.58e-22 95.1
MS.gene48788.t1 MTR_7g451170 35.404 161 89 5 12 170 191 338 1.97e-22 96.7
MS.gene48788.t1 MTR_0197s0010 35.333 150 77 2 14 144 5 153 2.31e-22 93.2
MS.gene48788.t1 MTR_5g078910 43.269 104 58 1 10 113 7 109 3.69e-22 94.4
MS.gene48788.t1 MTR_5g078930 44.118 102 56 1 11 112 10 110 4.36e-22 92.4
MS.gene48788.t1 MTR_5g079290 42.609 115 63 3 1 114 9 121 4.44e-22 93.2
MS.gene48788.t1 MTR_1g085880 40.000 160 82 6 10 157 11 168 4.91e-22 91.7
MS.gene48788.t1 MTR_7g037260 33.149 181 99 6 10 190 143 301 5.10e-22 94.7
MS.gene48788.t1 MTR_4g128190 42.647 136 58 6 10 141 11 130 5.85e-22 92.4
MS.gene48788.t1 MTR_7g035350 32.979 188 114 6 15 201 228 404 2.24e-21 94.0
MS.gene48788.t1 MTR_1g085770 40.000 160 82 6 10 157 11 168 2.29e-21 92.0
MS.gene48788.t1 MTR_7g017260 44.660 103 54 2 10 110 25 126 2.62e-21 91.3
MS.gene48788.t1 MTR_3g077650 44.118 102 55 2 12 113 181 280 2.80e-21 93.6
MS.gene48788.t1 MTR_5g079220 42.609 115 63 3 1 114 13 125 2.94e-21 91.3
MS.gene48788.t1 MTR_0001s0360 42.574 101 57 1 10 110 7 106 3.29e-21 90.9
MS.gene48788.t1 MTR_4g063100 53.086 81 35 2 44 122 12 91 3.73e-21 89.7
MS.gene48788.t1 MTR_6g074860 44.762 105 56 2 12 116 4 106 4.75e-21 90.1
MS.gene48788.t1 MTR_5g079120 41.818 110 62 2 4 113 56 163 5.69e-21 91.3
MS.gene48788.t1 MTR_7g037130 29.688 192 109 6 1 190 134 301 7.11e-21 91.7
MS.gene48788.t1 MTR_5g007300 53.846 78 35 1 10 87 64 140 1.36e-20 86.3
MS.gene48788.t1 MTR_0193s0090 40.385 104 61 1 10 113 7 109 2.35e-20 87.4
MS.gene48788.t1 MTR_0247s0040 43.000 100 56 1 10 109 7 105 4.78e-20 85.9
MS.gene48788.t1 MTR_5g078800 42.609 115 62 3 4 116 2 114 4.95e-20 87.8
MS.gene48788.t1 MTR_7g450950 33.333 150 86 4 12 157 157 296 6.09e-20 88.6
MS.gene48788.t1 MTR_5g041570 41.085 129 60 4 12 126 134 260 1.04e-19 89.0
MS.gene48788.t1 MTR_1g057980 35.032 157 94 5 10 163 78 229 1.11e-19 87.4
MS.gene48788.t1 MTR_5g078860 41.739 115 63 3 4 116 2 114 1.75e-19 87.0
MS.gene48788.t1 MTR_4g082040 43.590 117 61 3 3 116 93 207 3.15e-19 87.4
MS.gene48788.t1 MTR_6g055910 50.588 85 36 2 36 115 6 89 5.50e-19 84.7
MS.gene48788.t1 MTR_7g111290 58.462 65 26 1 44 108 4 67 7.43e-19 85.5
MS.gene48788.t1 MTR_3g045430 39.623 106 63 1 8 113 11 115 1.03e-18 84.7
MS.gene48788.t1 MTR_7g061550 41.346 104 58 2 15 116 10 112 3.93e-18 84.0
MS.gene48788.t1 MTR_5g010650 43.878 98 53 2 10 107 108 203 1.00e-17 83.6
MS.gene48788.t1 MTR_6g027370 40.000 105 61 2 12 116 99 201 1.49e-17 82.0
MS.gene48788.t1 MTR_6g027360 37.500 112 68 2 5 116 71 180 2.23e-17 81.3
MS.gene48788.t1 MTR_6g027340 39.048 105 62 2 12 116 16 118 3.30e-17 78.6
MS.gene48788.t1 MTR_3g089045 45.714 105 55 2 12 116 16 118 3.50e-17 80.5
MS.gene48788.t1 MTR_7g086960 44.643 112 57 3 8 116 82 191 5.54e-17 80.5
MS.gene48788.t1 MTR_8g468380 37.864 103 62 2 15 117 25 125 4.07e-16 78.6
MS.gene48788.t1 MTR_5g038910 39.394 99 58 2 15 113 29 125 4.22e-15 75.5
MS.gene48788.t1 MTR_5g038910 39.394 99 58 2 15 113 29 125 6.47e-15 74.7
MS.gene48788.t1 MTR_0023s0210 39.744 78 46 1 10 87 7 83 1.18e-11 60.1
MS.gene48788.t1 MTR_2g096380 26.506 166 111 3 73 233 5 164 6.31e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48788.t1 AT3G60460 41.613 310 138 7 4 292 5 292 9.36e-62 198
MS.gene48788.t1 AT4G26930 51.613 124 57 3 10 132 19 140 5.63e-37 135
MS.gene48788.t1 AT5G06100 54.206 107 48 1 10 116 32 137 6.83e-37 137
MS.gene48788.t1 AT5G06100 54.206 107 48 1 10 116 32 137 2.62e-36 136
MS.gene48788.t1 AT5G06100 54.206 107 48 1 10 116 32 137 2.62e-36 136
MS.gene48788.t1 AT5G06100 54.206 107 48 1 10 116 32 137 2.62e-36 136
MS.gene48788.t1 AT5G06100 54.206 107 48 1 10 116 32 137 2.62e-36 136
MS.gene48788.t1 AT3G11440 51.351 111 53 1 6 116 37 146 3.56e-36 135
MS.gene48788.t1 AT3G11440 51.351 111 53 1 6 116 37 146 2.02e-35 134
MS.gene48788.t1 AT3G11440 51.351 111 53 1 6 116 37 146 2.02e-35 134
MS.gene48788.t1 AT3G11440 51.351 111 53 1 6 116 37 146 2.02e-35 134
MS.gene48788.t1 AT5G55020 52.336 107 50 1 10 116 26 131 1.25e-34 131
MS.gene48788.t1 AT2G32460 50.467 107 52 1 10 116 18 123 4.73e-34 129
MS.gene48788.t1 AT2G32460 50.467 107 52 1 10 116 6 111 4.75e-34 129
MS.gene48788.t1 AT2G26960 52.336 107 50 1 10 116 20 125 2.06e-33 127
MS.gene48788.t1 AT3G13890 54.808 104 46 1 10 113 12 114 1.98e-32 123
MS.gene48788.t1 AT1G34670 50.962 104 50 1 10 113 12 114 2.14e-32 123
MS.gene48788.t1 AT4G21440 50.000 112 54 2 6 116 8 118 3.10e-32 122
MS.gene48788.t1 AT4G28110 47.541 122 60 3 6 124 8 128 3.59e-32 120
MS.gene48788.t1 AT4G01680 53.271 107 49 1 10 116 12 117 4.98e-32 119
MS.gene48788.t1 AT5G65230 50.962 104 50 1 10 113 12 114 7.17e-32 120
MS.gene48788.t1 AT3G27810 36.905 168 100 4 10 174 20 184 9.68e-32 118
MS.gene48788.t1 AT5G26660 53.271 107 49 1 10 116 12 117 1.32e-31 120
MS.gene48788.t1 AT5G15310 50.000 104 51 1 10 113 12 114 1.37e-31 118
MS.gene48788.t1 AT4G01680 53.271 107 49 1 10 116 12 117 1.46e-31 120
MS.gene48788.t1 AT3G01530 42.063 126 69 2 6 131 21 142 1.76e-31 117
MS.gene48788.t1 AT3G12720 47.967 123 63 1 10 132 22 143 3.80e-31 118
MS.gene48788.t1 AT5G54230 50.000 104 51 1 10 113 12 114 3.90e-31 119
MS.gene48788.t1 AT1G63910 50.467 107 52 1 10 116 12 117 4.25e-31 119
MS.gene48788.t1 AT1G57560 46.212 132 67 3 10 138 12 142 4.55e-31 118
MS.gene48788.t1 AT5G15310 50.000 104 51 1 10 113 12 114 4.55e-31 119
MS.gene48788.t1 AT1G74650 48.148 108 55 1 6 113 8 114 4.71e-31 119
MS.gene48788.t1 AT5G15310 50.000 104 51 1 10 113 12 114 4.78e-31 118
MS.gene48788.t1 AT1G08810 50.962 104 50 1 10 113 12 114 4.90e-31 117
MS.gene48788.t1 AT3G28910 46.296 108 57 1 6 113 8 114 5.13e-31 118
MS.gene48788.t1 AT3G61250 41.892 148 71 3 10 143 12 158 5.98e-31 117
MS.gene48788.t1 AT3G30210 43.066 137 70 2 11 147 28 156 6.83e-31 117
MS.gene48788.t1 AT1G57560 44.776 134 70 3 10 140 12 144 8.15e-31 117
MS.gene48788.t1 AT5G59780 48.696 115 56 2 11 123 9 122 9.71e-31 115
MS.gene48788.t1 AT3G02940 49.057 106 52 2 10 114 12 116 1.05e-30 117
MS.gene48788.t1 AT4G05100 50.000 106 51 2 10 114 13 117 1.11e-30 117
MS.gene48788.t1 AT3G01140 47.222 108 56 1 6 113 8 114 1.17e-30 118
MS.gene48788.t1 AT3G50060 57.843 102 41 2 12 113 6 105 1.22e-30 117
MS.gene48788.t1 AT3G46130 49.565 115 55 2 11 123 10 123 1.22e-30 116
MS.gene48788.t1 AT3G02940 49.057 106 52 2 10 114 12 116 1.36e-30 117
MS.gene48788.t1 AT3G02940 49.057 106 52 2 10 114 12 116 1.36e-30 117
MS.gene48788.t1 AT3G47600 48.077 104 53 1 10 113 12 114 1.38e-30 117
MS.gene48788.t1 AT5G62470 47.222 108 56 1 6 113 8 114 1.54e-30 118
MS.gene48788.t1 AT1G79180 47.458 118 60 2 10 126 14 130 1.56e-30 116
MS.gene48788.t1 AT3G01140 47.222 108 56 1 6 113 51 157 1.96e-30 118
MS.gene48788.t1 AT1G09540 52.885 104 48 1 10 113 12 114 2.40e-30 117
MS.gene48788.t1 AT1G16490 50.962 104 50 1 10 113 14 116 2.68e-30 115
MS.gene48788.t1 AT5G16770 49.057 106 52 2 10 114 12 116 3.97e-30 116
MS.gene48788.t1 AT5G16770 49.057 106 52 2 10 114 12 116 3.97e-30 116
MS.gene48788.t1 AT2G47190 45.370 108 58 1 10 117 20 126 4.24e-30 115
MS.gene48788.t1 AT5G40350 45.192 104 56 1 10 113 17 119 5.29e-30 113
MS.gene48788.t1 AT3G13890 50.442 113 46 2 10 113 12 123 5.32e-30 116
MS.gene48788.t1 AT5G16770 49.057 106 52 2 10 114 12 116 5.48e-30 116
MS.gene48788.t1 AT5G16770 49.057 106 52 2 10 114 12 116 5.48e-30 116
MS.gene48788.t1 AT4G09460 42.754 138 74 4 6 142 8 141 1.08e-29 113
MS.gene48788.t1 AT1G56160 35.838 173 106 3 6 174 10 181 1.47e-29 114
MS.gene48788.t1 AT1G48000 47.525 101 52 1 10 110 32 131 1.49e-29 112
MS.gene48788.t1 AT1G18570 44.928 138 68 4 10 147 13 142 1.59e-29 115
MS.gene48788.t1 AT2G31180 44.248 113 61 2 6 117 8 119 2.41e-29 112
MS.gene48788.t1 AT3G23250 41.353 133 76 2 6 137 8 139 2.71e-29 113
MS.gene48788.t1 AT5G10280 49.038 104 52 1 10 113 12 114 2.75e-29 114
MS.gene48788.t1 AT5G62470 47.222 108 55 2 6 113 8 113 2.98e-29 114
MS.gene48788.t1 AT5G61420 35.533 197 101 6 10 201 12 187 3.21e-29 114
MS.gene48788.t1 AT3G55730 56.863 102 42 2 12 113 56 155 3.39e-29 115
MS.gene48788.t1 AT5G67300 56.863 102 42 2 12 113 6 105 3.63e-29 113
MS.gene48788.t1 AT3G24310 43.411 129 65 3 6 134 15 135 3.90e-29 112
MS.gene48788.t1 AT4G34990 48.148 108 55 1 6 113 8 114 3.95e-29 112
MS.gene48788.t1 AT1G35515 48.624 109 53 3 6 113 8 114 3.96e-29 110
MS.gene48788.t1 AT3G48920 52.427 103 48 1 11 113 19 120 4.22e-29 112
MS.gene48788.t1 AT1G22640 47.222 108 56 1 6 113 8 114 9.38e-29 111
MS.gene48788.t1 AT5G07690 46.667 105 55 1 10 114 12 115 1.02e-28 112
MS.gene48788.t1 AT3G53200 48.673 113 55 2 10 120 9 120 1.04e-28 110
MS.gene48788.t1 AT5G60890 50.000 104 51 1 10 113 12 114 1.10e-28 111
MS.gene48788.t1 AT4G37780 49.524 105 51 2 10 113 12 115 1.64e-28 111
MS.gene48788.t1 AT4G38620 44.000 125 67 2 6 128 8 131 1.69e-28 110
MS.gene48788.t1 AT5G57620 48.624 109 54 2 6 113 8 115 1.83e-28 112
MS.gene48788.t1 AT4G01680 48.739 119 48 3 10 116 12 129 1.89e-28 112
MS.gene48788.t1 AT5G23000 50.467 107 50 3 10 114 12 117 2.35e-28 111
MS.gene48788.t1 AT4G13480 47.573 103 53 1 11 113 7 108 2.56e-28 110
MS.gene48788.t1 AT2G47460 44.915 118 64 1 6 123 8 124 4.24e-28 111
MS.gene48788.t1 AT2G16720 48.624 109 53 3 6 113 8 114 4.45e-28 109
MS.gene48788.t1 AT4G17785 48.077 104 53 1 10 113 13 115 4.92e-28 111
MS.gene48788.t1 AT5G07700 48.077 104 53 1 10 113 12 114 5.01e-28 110
MS.gene48788.t1 AT5G07700 48.077 104 53 1 10 113 12 114 5.01e-28 110
MS.gene48788.t1 AT4G17785 48.077 104 53 1 10 113 13 115 5.48e-28 111
MS.gene48788.t1 AT4G37260 53.922 102 45 2 12 113 13 112 5.92e-28 110
MS.gene48788.t1 AT3G12820 48.148 108 55 1 6 113 10 116 1.01e-27 107
MS.gene48788.t1 AT1G18710 44.262 122 64 3 10 128 12 132 1.02e-27 108
MS.gene48788.t1 AT1G06180 45.370 108 58 1 6 113 8 114 1.22e-27 107
MS.gene48788.t1 AT1G66230 45.968 124 63 2 10 130 12 134 1.49e-27 108
MS.gene48788.t1 AT5G49330 47.115 104 54 1 10 113 12 114 1.70e-27 109
MS.gene48788.t1 AT2G23290 53.922 102 45 2 12 113 13 112 1.84e-27 108
MS.gene48788.t1 AT5G56110 46.296 108 57 1 6 113 8 114 2.74e-27 108
MS.gene48788.t1 AT1G68320 42.056 107 61 1 10 116 19 124 2.97e-27 107
MS.gene48788.t1 AT1G25340 43.396 106 59 1 11 116 19 123 3.59e-27 107
MS.gene48788.t1 AT5G16600 44.776 134 67 3 10 137 12 144 4.32e-27 108
MS.gene48788.t1 AT3G08500 50.000 104 51 1 10 113 30 132 6.98e-27 107
MS.gene48788.t1 AT5G14340 42.982 114 64 1 10 123 24 136 7.16e-27 106
MS.gene48788.t1 AT2G36890 44.037 109 59 2 6 113 8 115 7.27e-27 107
MS.gene48788.t1 AT5G12870 48.148 108 54 2 10 116 18 124 8.49e-27 106
MS.gene48788.t1 AT3G13540 42.063 126 69 3 10 132 23 147 9.68e-27 105
MS.gene48788.t1 AT4G22680 49.038 104 52 1 10 113 12 114 1.15e-26 105
MS.gene48788.t1 AT4G25560 48.544 103 52 1 11 113 11 112 1.29e-26 105
MS.gene48788.t1 AT2G36890 44.037 109 59 2 6 113 49 156 1.30e-26 107
MS.gene48788.t1 AT5G52600 45.370 108 58 1 2 109 4 110 1.54e-26 103
MS.gene48788.t1 AT4G18770 40.940 149 84 4 3 149 208 354 1.70e-26 108
MS.gene48788.t1 AT3G49690 46.552 116 60 2 6 120 8 122 1.77e-26 106
MS.gene48788.t1 AT3G28470 49.038 104 52 1 6 109 8 110 2.31e-26 105
MS.gene48788.t1 AT1G74430 43.333 120 64 3 10 126 12 130 3.12e-26 104
MS.gene48788.t1 AT5G35550 37.662 154 89 4 7 158 11 159 3.86e-26 104
MS.gene48788.t1 AT5G14750 48.000 100 51 1 11 110 17 115 3.88e-26 102
MS.gene48788.t1 AT2G26950 35.385 195 108 6 12 199 18 201 5.05e-26 106
MS.gene48788.t1 AT3G62610 43.220 118 66 1 6 123 8 124 5.34e-26 105
MS.gene48788.t1 AT4G12350 45.902 122 60 3 10 127 12 131 5.67e-26 104
MS.gene48788.t1 AT5G40330 44.954 109 59 1 1 109 3 110 8.51e-26 102
MS.gene48788.t1 AT5G65790 45.690 116 61 2 6 120 8 122 1.17e-25 105
MS.gene48788.t1 AT1G79180 38.158 152 57 4 10 126 14 163 1.48e-25 103
MS.gene48788.t1 AT2G39880 51.961 102 47 2 12 113 50 149 1.55e-25 104
MS.gene48788.t1 AT1G74080 46.154 104 55 1 10 113 12 114 1.62e-25 103
MS.gene48788.t1 AT5G52260 41.290 155 78 4 11 163 13 156 4.08e-25 101
MS.gene48788.t1 AT3G27920 42.400 125 62 3 11 126 15 138 6.98e-25 100
MS.gene48788.t1 AT5G11050 43.697 119 63 3 10 126 103 219 1.03e-24 103
MS.gene48788.t1 AT1G25340 42.453 106 55 2 11 116 19 118 1.35e-24 100
MS.gene48788.t1 AT1G25340 42.453 106 55 2 11 116 19 118 2.56e-24 100
MS.gene48788.t1 AT3G09230 50.000 102 49 2 12 113 55 154 2.70e-24 101
MS.gene48788.t1 AT5G62320 45.946 111 52 2 10 113 13 122 4.40e-24 98.2
MS.gene48788.t1 AT5G49620 46.154 104 55 1 10 113 26 128 1.16e-23 98.6
MS.gene48788.t1 AT3G06490 47.115 104 54 1 10 113 19 121 1.16e-23 99.0
MS.gene48788.t1 AT5G58850 45.946 111 56 3 12 120 105 213 2.40e-23 99.4
MS.gene48788.t1 AT5G02320 44.628 121 62 3 10 127 125 243 4.32e-23 99.4
MS.gene48788.t1 AT5G02320 44.628 121 62 3 10 127 125 243 4.32e-23 99.4
MS.gene48788.t1 AT5G02320 44.628 121 62 3 10 127 65 183 4.40e-23 99.0
MS.gene48788.t1 AT5G40360 42.727 110 61 2 6 115 152 259 1.24e-22 96.7
MS.gene48788.t1 AT4G32730 44.545 110 58 3 10 118 85 192 2.10e-22 97.8
MS.gene48788.t1 AT4G32730 44.545 110 58 3 10 118 85 192 2.10e-22 97.8
MS.gene48788.t1 AT4G32730 44.545 110 58 3 10 118 85 192 2.10e-22 97.8
MS.gene48788.t1 AT4G32730 44.545 110 58 3 10 118 85 192 2.10e-22 97.8
MS.gene48788.t1 AT4G32730 44.545 110 58 3 10 118 85 192 2.45e-22 97.4
MS.gene48788.t1 AT3G46130 52.874 87 38 2 39 123 6 91 3.92e-22 92.8
MS.gene48788.t1 AT5G59780 54.878 82 34 2 44 123 21 101 4.50e-22 92.0
MS.gene48788.t1 AT1G66370 40.769 130 67 3 10 130 8 136 4.71e-22 92.8
MS.gene48788.t1 AT5G26660 58.904 73 29 1 44 116 15 86 4.79e-22 94.4
MS.gene48788.t1 AT3G27810 38.060 134 77 4 44 174 5 135 4.95e-22 91.3
MS.gene48788.t1 AT3G09370 45.794 107 56 2 12 118 130 234 6.05e-22 95.9
MS.gene48788.t1 AT3G09370 45.794 107 56 2 12 118 135 239 6.33e-22 95.9
MS.gene48788.t1 AT5G11510 41.284 109 62 2 10 118 79 185 7.27e-22 96.3
MS.gene48788.t1 AT5G11510 41.284 109 62 2 10 118 79 185 7.27e-22 96.3
MS.gene48788.t1 AT5G11510 41.284 109 62 2 10 118 79 185 7.27e-22 96.3
MS.gene48788.t1 AT3G09370 45.794 107 56 2 12 118 143 247 7.35e-22 95.5
MS.gene48788.t1 AT3G46130 54.878 82 34 2 44 123 21 101 7.78e-22 92.0
MS.gene48788.t1 AT5G11510 41.284 109 62 2 10 118 79 185 9.05e-22 95.9
MS.gene48788.t1 AT5G11510 41.284 109 62 2 10 118 79 185 9.43e-22 95.9
MS.gene48788.t1 AT3G27785 41.667 108 61 2 6 113 183 288 1.85e-21 94.0
MS.gene48788.t1 AT1G66380 45.000 100 54 1 10 109 8 106 1.91e-21 88.6
MS.gene48788.t1 AT3G29020 46.875 96 49 2 12 107 65 158 2.69e-21 90.5
MS.gene48788.t1 AT3G29020 44.762 105 56 2 12 116 67 169 3.49e-21 91.7
MS.gene48788.t1 AT1G56650 45.000 100 54 1 10 109 8 106 6.03e-21 90.1
MS.gene48788.t1 AT5G40350 51.429 70 33 1 44 113 6 74 3.53e-20 85.9
MS.gene48788.t1 AT5G49620 40.678 118 55 2 10 113 26 142 3.85e-20 89.0
MS.gene48788.t1 AT3G53200 53.165 79 34 2 44 120 10 87 1.00e-19 85.5
MS.gene48788.t1 AT1G69560 44.554 101 54 2 7 107 102 200 1.10e-19 87.8
MS.gene48788.t1 AT1G69560 44.554 101 54 2 7 107 118 216 1.24e-19 87.8
MS.gene48788.t1 AT1G26780 39.683 126 61 3 10 122 96 219 2.19e-19 86.3
MS.gene48788.t1 AT4G33450 41.935 124 65 4 11 131 18 137 2.20e-19 85.9
MS.gene48788.t1 AT1G26780 39.683 126 61 3 10 122 96 219 2.32e-19 87.4
MS.gene48788.t1 AT1G66390 43.000 100 56 1 10 109 8 106 2.56e-19 85.5
MS.gene48788.t1 AT5G17800 42.241 116 62 3 12 124 93 206 3.63e-19 86.3
MS.gene48788.t1 AT3G12820 55.882 68 29 1 46 113 2 68 3.66e-19 84.0
MS.gene48788.t1 AT2G25230 38.793 116 67 4 10 124 24 136 5.80e-19 84.3
MS.gene48788.t1 AT3G47600 52.857 70 32 1 44 113 40 108 6.73e-19 85.5
MS.gene48788.t1 AT1G17950 43.810 105 54 3 12 113 5 107 8.01e-19 84.3
MS.gene48788.t1 AT5G35550 41.880 117 61 4 44 158 51 162 2.53e-18 83.2
MS.gene48788.t1 AT4G00540 45.045 111 55 4 10 116 101 209 1.01e-17 83.2
MS.gene48788.t1 AT4G00540 45.045 111 55 4 10 116 99 207 1.62e-17 82.8
MS.gene48788.t1 AT2G37630 41.346 104 58 2 15 116 7 109 3.56e-17 81.3
MS.gene48788.t1 AT5G39700 38.793 116 69 2 1 116 45 158 6.85e-17 77.4
MS.gene48788.t1 AT1G73410 44.762 105 53 3 12 113 6 108 7.47e-17 78.6
MS.gene48788.t1 AT1G73410 44.762 105 53 3 12 113 6 108 8.25e-17 77.8
MS.gene48788.t1 AT5G14750 52.308 65 30 1 46 110 18 81 3.24e-16 75.1
MS.gene48788.t1 AT5G40430 37.500 112 67 3 10 121 52 160 8.39e-16 75.9
MS.gene48788.t1 AT2G02820 34.921 126 66 3 15 140 33 142 2.23e-14 73.6
MS.gene48788.t1 AT2G02820 34.921 126 66 3 15 140 33 142 2.43e-14 72.8
MS.gene48788.t1 AT2G02820 34.921 126 66 3 15 140 33 142 2.60e-14 73.2
MS.gene48788.t1 AT1G14350 36.449 107 66 2 15 121 28 132 3.36e-14 72.8
MS.gene48788.t1 AT1G14350 36.449 107 66 2 15 121 28 132 3.36e-14 72.8
MS.gene48788.t1 AT1G66380 51.515 66 31 1 44 109 9 73 8.40e-13 63.9
MS.gene48788.t1 AT1G66380 36.735 98 60 2 10 106 8 104 1.91e-12 63.2
MS.gene48788.t1 AT3G23250 40.964 83 47 2 56 137 1 82 3.40e-12 65.1
MS.gene48788.t1 AT1G22640 50.000 58 28 1 56 113 1 57 2.22e-11 62.4
MS.gene48788.t1 AT3G18100 38.144 97 58 2 11 107 384 478 4.78e-11 63.5
MS.gene48788.t1 AT3G18100 38.144 97 58 2 11 107 545 639 5.12e-11 63.5
MS.gene48788.t1 AT3G18100 38.144 97 58 2 11 107 497 591 5.46e-11 63.5
MS.gene48788.t1 AT3G18100 38.144 97 58 2 11 107 332 426 5.77e-11 63.5
MS.gene48788.t1 AT5G59780 48.148 54 26 1 72 123 4 57 7.19e-11 60.5

Find 70 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAATATGTAGCAATTT+TGG 0.139113 4.4:-73429926 None:intergenic
CTCAAACATGTCCATAAAAT+TGG 0.140060 4.4:-73430791 None:intergenic
GGCCAAAATTGCTACATATT+TGG 0.140847 4.4:+73429924 MS.gene48788:CDS
TACTCACCCAACTTCTTATA+TGG 0.180735 4.4:+73430540 MS.gene48788:CDS
ATTGAACTACAGGGCCAATT+TGG 0.210428 4.4:+73429892 MS.gene48788:CDS
TTTGGAGTAGCAGGAGAAAA+AGG 0.243245 4.4:+73429977 MS.gene48788:CDS
TTAGTTCACTTTCCAAATTT+TGG 0.243837 4.4:-73430618 None:intergenic
TTGTGTTTCTGCTGCTTTGA+TGG 0.256433 4.4:-73430033 None:intergenic
AAAGCCAAACTACCAAAATT+TGG 0.257129 4.4:+73430606 MS.gene48788:CDS
TGGCCCATTTGTTCCCAAAT+TGG 0.264545 4.4:-73429906 None:intergenic
AAGTTCAAACTGCTTCTTTC+AGG 0.270783 4.4:+73430900 MS.gene48788:CDS
GGAAAGTCCATCTGTGATTC+AGG 0.284117 4.4:-73430724 None:intergenic
TTGAAACATGTTAACAAATA+TGG 0.313597 4.4:+73428952 MS.gene48788:CDS
TAGTTTGGCTTTGTTAAATC+TGG 0.332623 4.4:-73430595 None:intergenic
AGCTGATTTGAACCACATTC+AGG 0.362249 4.4:-73430505 None:intergenic
TCAAACATGTCCATAAAATT+GGG 0.364368 4.4:-73430790 None:intergenic
AGTTCTTGGCAAAAGACCTT+TGG 0.382985 4.4:-73429001 None:intergenic
GAAAATCATGTCGGTTAAGA+TGG 0.389252 4.4:+73429025 MS.gene48788:CDS
AATTTGGAAAGTGAACTAAA+TGG 0.393704 4.4:+73430622 MS.gene48788:CDS
TGCTGCTTTGATGGTGGTGA+TGG 0.407537 4.4:-73430024 None:intergenic
AGGGCCAATTTGGGAACAAA+TGG 0.408226 4.4:+73429902 MS.gene48788:CDS
ACAAATATGGTCCTAGAGAT+TGG 0.416347 4.4:+73428965 MS.gene48788:CDS
AAGGGTGGTGATTGAACTAC+AGG 0.423925 4.4:+73429882 MS.gene48788:CDS
AAATGGAATTATTGAGTTTG+AGG 0.424108 4.4:+73430639 MS.gene48788:CDS
TTGAACTACAGGGCCAATTT+GGG 0.426312 4.4:+73429893 MS.gene48788:CDS
ACTCACCCAACTTCTTATAT+GGG 0.435076 4.4:+73430541 MS.gene48788:CDS
TTGCCAAGTCTTGGACTTGA+AGG 0.435753 4.4:+73430862 MS.gene48788:CDS
TGAACAAGGTCTTGGCACTC+TGG 0.436596 4.4:-73430754 None:intergenic
TGTTTCCCATATAAGAAGTT+GGG 0.438080 4.4:-73430546 None:intergenic
GTCCATAAAATTGGGGTCAA+AGG 0.440887 4.4:-73430782 None:intergenic
TCTTGGCACTCTGGGAATAG+TGG 0.453927 4.4:-73430745 None:intergenic
TCCATAAAATTGGGGTCAAA+GGG 0.456231 4.4:-73430781 None:intergenic
TTGTTTCCCATATAAGAAGT+TGG 0.464607 4.4:-73430547 None:intergenic
GATGGTGGTGATGGTGTCCT+TGG 0.466017 4.4:-73430015 None:intergenic
GGAACTAGGTTGCCAAGTCT+TGG 0.466768 4.4:+73430853 MS.gene48788:CDS
AAATCAAGTAAAAGTTGAAA+AGG 0.470372 4.4:+73430071 MS.gene48788:CDS
CTATTTCAGGTTCCTGAATG+TGG 0.476424 4.4:+73430493 MS.gene48788:intron
AGGGATCTTGAACAAGGTCT+TGG 0.494997 4.4:-73430762 None:intergenic
CAAAAGACCTTTGGATCGAA+TGG 0.500376 4.4:-73428992 None:intergenic
AGTGTTTGGAGCAAGAAGAA+TGG 0.502724 4.4:+73430832 MS.gene48788:CDS
TTCATTAGAGGAAGAAAGGG+TGG 0.503576 4.4:+73429867 MS.gene48788:CDS
ATCTGTGATTCAGGGAGTAA+TGG 0.504206 4.4:-73430715 None:intergenic
GAACAAGGTCTTGGCACTCT+GGG 0.512429 4.4:-73430753 None:intergenic
CGAATGGAGCTCCAATCTCT+AGG 0.517393 4.4:-73428976 None:intergenic
ATCAAAGCAGCAGAAACACA+AGG 0.531957 4.4:+73430035 MS.gene48788:CDS
AAAATTGCTACATATTTGGA+AGG 0.543315 4.4:+73429928 MS.gene48788:CDS
TCATCTTCTTCACTACTCCA+TGG 0.545375 4.4:-73428922 None:intergenic
TGTTTCTGCTGCTTTGATGG+TGG 0.546809 4.4:-73430030 None:intergenic
GGGCCAATTTGGGAACAAAT+GGG 0.547359 4.4:+73429903 MS.gene48788:CDS
TTTCCTTCAAGTCCAAGACT+TGG 0.558372 4.4:-73430865 None:intergenic
TTGGCTTTGTTAAATCTGGA+AGG 0.560135 4.4:-73430591 None:intergenic
ATGGAAAGAGAATATGAAAG+AGG 0.565781 4.4:+73428883 MS.gene48788:CDS
AAAATCATGTCGGTTAAGAT+GGG 0.567797 4.4:+73429026 MS.gene48788:CDS
GGAGCAAGAAGAATGGAACT+AGG 0.574079 4.4:+73430839 MS.gene48788:CDS
TGGAGCTCCATTCGATCCAA+AGG 0.580870 4.4:+73428985 MS.gene48788:CDS
TTCTTATATGGGAAACAAAG+AGG 0.593324 4.4:+73430552 MS.gene48788:CDS
GAAAGTCCATCTGTGATTCA+GGG 0.593626 4.4:-73430723 None:intergenic
ATTACTCCCTGAATCACAGA+TGG 0.605254 4.4:+73430717 MS.gene48788:CDS
GGATGGAGAGGAATTATCCA+AGG 0.606339 4.4:+73429998 MS.gene48788:CDS
TGCTGATGAAGACTCAAATG+AGG 0.614303 4.4:-73430683 None:intergenic
ATGTGGTTCAAATCAGCTTG+AGG 0.615982 4.4:+73430510 MS.gene48788:CDS
AATGAGGGTACTGTGTGAAG+TGG 0.635827 4.4:-73430667 None:intergenic
CAAACATGTCCATAAAATTG+GGG 0.636075 4.4:-73430789 None:intergenic
GGTCAAAGGGATCTTGAACA+AGG 0.644333 4.4:-73430768 None:intergenic
GCTGATGAAGACTCAAATGA+GGG 0.648150 4.4:-73430682 None:intergenic
AAATTGCTACATATTTGGAA+GGG 0.659564 4.4:+73429929 MS.gene48788:CDS
CAAGAACTGGAAAATCATGT+CGG 0.674438 4.4:+73429016 MS.gene48788:CDS
TCAAAGCAGCAGAAACACAA+GGG 0.678275 4.4:+73430036 MS.gene48788:CDS
GGGTACTGTGTGAAGTGGAG+TGG 0.686347 4.4:-73430662 None:intergenic
AGGGTGGTGATTGAACTACA+GGG 0.755598 4.4:+73429883 MS.gene48788:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAACAATAATTAAAATT+AGG - chr4.4:73429100-73429119 None:intergenic 10.0%
!!! AAATACATTGCTATATTTTT+GGG - chr4.4:73429546-73429565 None:intergenic 15.0%
!!! AATTTAGAATTAAAAAAACC+AGG - chr4.4:73429272-73429291 None:intergenic 15.0%
!!! TGGTTTTTTTAATTCTAAAT+TGG + chr4.4:73429271-73429290 MS.gene48788:intron 15.0%
!! AAATCAAGTAAAAGTTGAAA+AGG + chr4.4:73430071-73430090 MS.gene48788:CDS 20.0%
!! ACAAACACTGTTAAATTAAA+CGG - chr4.4:73429767-73429786 None:intergenic 20.0%
!! TCAAAATGATTATGTAATCA+CGG - chr4.4:73430177-73430196 None:intergenic 20.0%
!! TTGAAACATGTTAACAAATA+TGG + chr4.4:73428952-73428971 MS.gene48788:CDS 20.0%
!! TTGATTCAATTATACTTCAT+AGG + chr4.4:73429483-73429502 MS.gene48788:intron 20.0%
!!! CAAATACATTGCTATATTTT+TGG - chr4.4:73429547-73429566 None:intergenic 20.0%
!!! TTGTTTGTTTCTACTATTTT+TGG - chr4.4:73429607-73429626 None:intergenic 20.0%
! AAAATTGCTACATATTTGGA+AGG + chr4.4:73429928-73429947 MS.gene48788:CDS 25.0%
! AAATGGAATTATTGAGTTTG+AGG + chr4.4:73430639-73430658 MS.gene48788:CDS 25.0%
! AAATTGCTACATATTTGGAA+GGG + chr4.4:73429929-73429948 MS.gene48788:CDS 25.0%
! AAGAAGTTACATTTATTGCA+AGG - chr4.4:73429670-73429689 None:intergenic 25.0%
! AAGTATTCAAAAATCTCAGT+TGG - chr4.4:73430931-73430950 None:intergenic 25.0%
! AATAACACCAAAAATCTGAA+AGG - chr4.4:73429310-73429329 None:intergenic 25.0%
! AATTTGGAAAGTGAACTAAA+TGG + chr4.4:73430622-73430641 MS.gene48788:CDS 25.0%
! ACATGAAAGATTAGAAAGTA+TGG + chr4.4:73430452-73430471 MS.gene48788:intron 25.0%
! AGAATTAAAAAAACCAGGAA+AGG - chr4.4:73429267-73429286 None:intergenic 25.0%
! ATAACACCAAAAATCTGAAA+GGG - chr4.4:73429309-73429328 None:intergenic 25.0%
! ATAGTGAAAATGTCTATTTC+AGG + chr4.4:73430480-73430499 MS.gene48788:intron 25.0%
! GAAAGAGGTTACATAAAAAA+AGG + chr4.4:73428898-73428917 MS.gene48788:CDS 25.0%
! TCAAACATGTCCATAAAATT+GGG - chr4.4:73430793-73430812 None:intergenic 25.0%
!! ACAATGATGTGAAGAATTTT+TGG + chr4.4:73429959-73429978 MS.gene48788:CDS 25.0%
!! ATGAAATGTCCAATTTTGTT+CGG + chr4.4:73430257-73430276 MS.gene48788:intron 25.0%
!! TTAGTTCACTTTCCAAATTT+TGG - chr4.4:73430621-73430640 None:intergenic 25.0%
!! TTCCAAATATGTAGCAATTT+TGG - chr4.4:73429929-73429948 None:intergenic 25.0%
!! TTGAAATGTCCAATTTTGTT+CGG + chr4.4:73430193-73430212 MS.gene48788:intron 25.0%
!!! AAAAATGTTCAGAAAGTGTT+TGG + chr4.4:73430818-73430837 MS.gene48788:CDS 25.0%
!!! AAACGATAATTTTAGTGTGA+AGG + chr4.4:73430403-73430422 MS.gene48788:intron 25.0%
!!! AACGATAATTTTAGTGTGAA+GGG + chr4.4:73430404-73430423 MS.gene48788:intron 25.0%
!!! TATATTTTTGGGATAAACCT+TGG - chr4.4:73429535-73429554 None:intergenic 25.0%
!!! TTGTGTTTTGTGTTTTGTTA+TGG + chr4.4:73429184-73429203 MS.gene48788:intron 25.0%
!!! TTTGTTTTGTGATGAAAGTT+TGG + chr4.4:73429811-73429830 MS.gene48788:intron 25.0%
AAAGCCAAACTACCAAAATT+TGG + chr4.4:73430606-73430625 MS.gene48788:CDS 30.0%
ATGAATCATCCGATTAACAT+CGG + chr4.4:73430331-73430350 MS.gene48788:intron 30.0%
ATGGAAAGAGAATATGAAAG+AGG + chr4.4:73428883-73428902 MS.gene48788:CDS 30.0%
ATGTGTGATTTCAATTGTAG+AGG + chr4.4:73429835-73429854 MS.gene48788:intron 30.0%
CAAACATGTCCATAAAATTG+GGG - chr4.4:73430792-73430811 None:intergenic 30.0%
CTCAAACATGTCCATAAAAT+TGG - chr4.4:73430794-73430813 None:intergenic 30.0%
GCTATTATTGTTCAAGTGTT+GGG + chr4.4:73429713-73429732 MS.gene48788:intron 30.0%
GTAATCACATGTGTTGAAAT+TGG - chr4.4:73429388-73429407 None:intergenic 30.0%
GTTACATAAAAAAAGGACCA+TGG + chr4.4:73428905-73428924 MS.gene48788:CDS 30.0%
TGCTATTATTGTTCAAGTGT+TGG + chr4.4:73429712-73429731 MS.gene48788:intron 30.0%
TGTTTCCCATATAAGAAGTT+GGG - chr4.4:73430549-73430568 None:intergenic 30.0%
TTACACTGACACATTAACAT+CGG - chr4.4:73429447-73429466 None:intergenic 30.0%
TTCTTATATGGGAAACAAAG+AGG + chr4.4:73430552-73430571 MS.gene48788:CDS 30.0%
TTGTTTCCCATATAAGAAGT+TGG - chr4.4:73430550-73430569 None:intergenic 30.0%
! AAAATCATGTCGGTTAAGAT+GGG + chr4.4:73429026-73429045 MS.gene48788:CDS 30.0%
! AGTTTTCATTAGAGGAAGAA+AGG + chr4.4:73429863-73429882 MS.gene48788:CDS 30.0%
! ATAGGTTGAAACATTGGATA+TGG + chr4.4:73429501-73429520 MS.gene48788:intron 30.0%
! CTATTATTGTTCAAGTGTTG+GGG + chr4.4:73429714-73429733 MS.gene48788:intron 30.0%
! GTTTTCATTAGAGGAAGAAA+GGG + chr4.4:73429864-73429883 MS.gene48788:CDS 30.0%
! TACTTCATAGGTTGAAACAT+TGG + chr4.4:73429495-73429514 MS.gene48788:intron 30.0%
!! CTTTCCAAATTTTGGTAGTT+TGG - chr4.4:73430613-73430632 None:intergenic 30.0%
!! TAGTTTGGCTTTGTTAAATC+TGG - chr4.4:73430598-73430617 None:intergenic 30.0%
!!! ACAGTGTTTGTTTTAGTGTA+CGG + chr4.4:73429776-73429795 MS.gene48788:intron 30.0%
!!! TGTTACTACGTTTTCAAGTT+GGG - chr4.4:73429066-73429085 None:intergenic 30.0%
!!! TTGTTACTACGTTTTCAAGT+TGG - chr4.4:73429067-73429086 None:intergenic 30.0%
AAGTTCAAACTGCTTCTTTC+AGG + chr4.4:73430900-73430919 MS.gene48788:CDS 35.0%
ACAAATATGGTCCTAGAGAT+TGG + chr4.4:73428965-73428984 MS.gene48788:CDS 35.0%
ACGAATTATAGAAACCTCTG+TGG + chr4.4:73429348-73429367 MS.gene48788:intron 35.0%
ACTCACCCAACTTCTTATAT+GGG + chr4.4:73430541-73430560 MS.gene48788:CDS 35.0%
CAAGAACTGGAAAATCATGT+CGG + chr4.4:73429016-73429035 MS.gene48788:CDS 35.0%
CGAATTATAGAAACCTCTGT+GGG + chr4.4:73429349-73429368 MS.gene48788:intron 35.0%
GGCCAAAATTGCTACATATT+TGG + chr4.4:73429924-73429943 MS.gene48788:CDS 35.0%
TACTCACCCAACTTCTTATA+TGG + chr4.4:73430540-73430559 MS.gene48788:CDS 35.0%
TCCATAAAATTGGGGTCAAA+GGG - chr4.4:73430784-73430803 None:intergenic 35.0%
TGGACATTTCATTGCAATGT+AGG - chr4.4:73430249-73430268 None:intergenic 35.0%
TTCTAGTGTCCGATGTTAAT+CGG - chr4.4:73430343-73430362 None:intergenic 35.0%
! AGGATGCAAGTTTTCATTAG+AGG + chr4.4:73429855-73429874 MS.gene48788:CDS 35.0%
! GAAAATCATGTCGGTTAAGA+TGG + chr4.4:73429025-73429044 MS.gene48788:CDS 35.0%
! GTGAAGTATCCGAACAAAAT+TGG - chr4.4:73430205-73430224 None:intergenic 35.0%
! TTCACACCCTTTCAGATTTT+TGG + chr4.4:73429300-73429319 MS.gene48788:intron 35.0%
!! TTGGCTTTGTTAAATCTGGA+AGG - chr4.4:73430594-73430613 None:intergenic 35.0%
!!! TGAAGAATTTTTGGAGTAGC+AGG + chr4.4:73429968-73429987 MS.gene48788:CDS 35.0%
AGTTCTTGGCAAAAGACCTT+TGG - chr4.4:73429004-73429023 None:intergenic 40.0%
ATCAAAGCAGCAGAAACACA+AGG + chr4.4:73430035-73430054 MS.gene48788:CDS 40.0%
ATCTGTGATTCAGGGAGTAA+TGG - chr4.4:73430718-73430737 None:intergenic 40.0%
ATGTGGTTCAAATCAGCTTG+AGG + chr4.4:73430510-73430529 MS.gene48788:CDS 40.0%
ATTACTCCCTGAATCACAGA+TGG + chr4.4:73430717-73430736 MS.gene48788:CDS 40.0%
ATTGAACTACAGGGCCAATT+TGG + chr4.4:73429892-73429911 MS.gene48788:CDS 40.0%
CAAAAGACCTTTGGATCGAA+TGG - chr4.4:73428995-73429014 None:intergenic 40.0%
GAAAGTCCATCTGTGATTCA+GGG - chr4.4:73430726-73430745 None:intergenic 40.0%
GCTGATGAAGACTCAAATGA+GGG - chr4.4:73430685-73430704 None:intergenic 40.0%
GTCCATAAAATTGGGGTCAA+AGG - chr4.4:73430785-73430804 None:intergenic 40.0%
TCAAAGCAGCAGAAACACAA+GGG + chr4.4:73430036-73430055 MS.gene48788:CDS 40.0%
TCATCTTCTTCACTACTCCA+TGG - chr4.4:73428925-73428944 None:intergenic 40.0%
TGCTGATGAAGACTCAAATG+AGG - chr4.4:73430686-73430705 None:intergenic 40.0%
TGGATATGGCAATGTAACCA+AGG + chr4.4:73429515-73429534 MS.gene48788:intron 40.0%
TGTTTATCTTGCTCCTTTCC+TGG + chr4.4:73429251-73429270 MS.gene48788:intron 40.0%
TTCATTAGAGGAAGAAAGGG+TGG + chr4.4:73429867-73429886 MS.gene48788:CDS 40.0%
TTGAACTACAGGGCCAATTT+GGG + chr4.4:73429893-73429912 MS.gene48788:CDS 40.0%
TTTCCTTCAAGTCCAAGACT+TGG - chr4.4:73430868-73430887 None:intergenic 40.0%
! AAAGGTCTTTTGCCAAGAAC+TGG + chr4.4:73429003-73429022 MS.gene48788:CDS 40.0%
! AGTGTTTGGAGCAAGAAGAA+TGG + chr4.4:73430832-73430851 MS.gene48788:CDS 40.0%
! CGACATGATTTTCCAGTTCT+TGG - chr4.4:73429018-73429037 None:intergenic 40.0%
! TCCCTTTGACCCCAATTTTA+TGG + chr4.4:73430780-73430799 MS.gene48788:CDS 40.0%
! TTTGGAGTAGCAGGAGAAAA+AGG + chr4.4:73429977-73429996 MS.gene48788:CDS 40.0%
!! AGCTGATTTGAACCACATTC+AGG - chr4.4:73430508-73430527 None:intergenic 40.0%
!! CTATTTCAGGTTCCTGAATG+TGG + chr4.4:73430493-73430512 MS.gene48788:intron 40.0%
!! TTGTGTTTCTGCTGCTTTGA+TGG - chr4.4:73430036-73430055 None:intergenic 40.0%
AAGGGTGGTGATTGAACTAC+AGG + chr4.4:73429882-73429901 MS.gene48788:CDS 45.0%
AGGGATCTTGAACAAGGTCT+TGG - chr4.4:73430765-73430784 None:intergenic 45.0%
AGGGCCAATTTGGGAACAAA+TGG + chr4.4:73429902-73429921 MS.gene48788:CDS 45.0%
AGGGTGGTGATTGAACTACA+GGG + chr4.4:73429883-73429902 MS.gene48788:CDS 45.0%
GAGTAGCAGGAGAAAAAGGA+TGG + chr4.4:73429981-73430000 MS.gene48788:CDS 45.0%
GGAAAGTCCATCTGTGATTC+AGG - chr4.4:73430727-73430746 None:intergenic 45.0%
GGAGCAAGAAGAATGGAACT+AGG + chr4.4:73430839-73430858 MS.gene48788:CDS 45.0%
GGATGGAGAGGAATTATCCA+AGG + chr4.4:73429998-73430017 MS.gene48788:CDS 45.0%
GGGCCAATTTGGGAACAAAT+GGG + chr4.4:73429903-73429922 MS.gene48788:CDS 45.0%
GGTCAAAGGGATCTTGAACA+AGG - chr4.4:73430771-73430790 None:intergenic 45.0%
TAGAAACCTCTGTGGGTGAT+TGG + chr4.4:73429356-73429375 MS.gene48788:intron 45.0%
TGGCCCATTTGTTCCCAAAT+TGG - chr4.4:73429909-73429928 None:intergenic 45.0%
TTGCCAAGTCTTGGACTTGA+AGG + chr4.4:73430862-73430881 MS.gene48788:CDS 45.0%
!! AATGAGGGTACTGTGTGAAG+TGG - chr4.4:73430670-73430689 None:intergenic 45.0%
!! TGTTTCTGCTGCTTTGATGG+TGG - chr4.4:73430033-73430052 None:intergenic 45.0%
!! TATAACAATAATTAAAATTA+GGG - chr4.4:73429099-73429118 None:intergenic 5.0%
CGAATGGAGCTCCAATCTCT+AGG - chr4.4:73428979-73428998 None:intergenic 50.0%
GAACAAGGTCTTGGCACTCT+GGG - chr4.4:73430756-73430775 None:intergenic 50.0%
GAGATAACCCTGCATTCACG+CGG - chr4.4:73430380-73430399 None:intergenic 50.0%
GCAGGAGAAAAAGGATGGAG+AGG + chr4.4:73429986-73430005 MS.gene48788:CDS 50.0%
GGAACTAGGTTGCCAAGTCT+TGG + chr4.4:73430853-73430872 MS.gene48788:CDS 50.0%
TGAACAAGGTCTTGGCACTC+TGG - chr4.4:73430757-73430776 None:intergenic 50.0%
TGGAGCTCCATTCGATCCAA+AGG + chr4.4:73428985-73429004 MS.gene48788:CDS 50.0%
! TCTTGGCACTCTGGGAATAG+TGG - chr4.4:73430748-73430767 None:intergenic 50.0%
!! TGCTGCTTTGATGGTGGTGA+TGG - chr4.4:73430027-73430046 None:intergenic 50.0%
CGAACACCAATCACCCACAG+AGG - chr4.4:73429365-73429384 None:intergenic 55.0%
CGTATGACCGCGTGAATGCA+GGG + chr4.4:73430370-73430389 MS.gene48788:intron 55.0%
TCGTATGACCGCGTGAATGC+AGG + chr4.4:73430369-73430388 MS.gene48788:intron 55.0%
! GGGTACTGTGTGAAGTGGAG+TGG - chr4.4:73430665-73430684 None:intergenic 55.0%
!! GATGGTGGTGATGGTGTCCT+TGG - chr4.4:73430018-73430037 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 73428883 73430960 73428883 ID=MS.gene48788
chr4.4 mRNA 73428883 73430960 73428883 ID=MS.gene48788.t1;Parent=MS.gene48788
chr4.4 exon 73428883 73429076 73428883 ID=MS.gene48788.t1.exon1;Parent=MS.gene48788.t1
chr4.4 CDS 73428883 73429076 73428883 ID=cds.MS.gene48788.t1;Parent=MS.gene48788.t1
chr4.4 exon 73429855 73430092 73429855 ID=MS.gene48788.t1.exon2;Parent=MS.gene48788.t1
chr4.4 CDS 73429855 73430092 73429855 ID=cds.MS.gene48788.t1;Parent=MS.gene48788.t1
chr4.4 exon 73430502 73430960 73430502 ID=MS.gene48788.t1.exon3;Parent=MS.gene48788.t1
chr4.4 CDS 73430502 73430960 73430502 ID=cds.MS.gene48788.t1;Parent=MS.gene48788.t1
Gene Sequence

>MS.gene48788

ATGGAAAGAGAATATGAAAGAGGTTACATAAAAAAAGGACCATGGAGTAGTGAAGAAGATGAAGTGTTATTGAAACATGTTAACAAATATGGTCCTAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTTTGCCAAGAACTGGAAAATCATGTCGGTTAAGATGGGTTAATAAGCTTAGACCCAACTTGAAAACGTAGTAACAATTTTCTTAACCCTAATTTTAATTATTGTTATACTTAATTTGAACATTGACATTGATTTCATGTTGTGTTGCAACTTTTTGTTTTTAATGTAATGTGTTTGTGTTTTGTGTTTTGTTATGGTTGTTGAATTAGAAAGAACTTGATTGTGCATAATTTTCATATATTGTTTATCTTGCTCCTTTCCTGGTTTTTTTAATTCTAAATTGGTAGTTTTTCACACCCTTTCAGATTTTTGGTGTTATTTATACTATATTTTTAGTAACGAATTATAGAAACCTCTGTGGGTGATTGGTGTTCGCCAATTTCAACACATGTGATTACATTCAATTGATATGTTTTTTTTTTTTTCAATTATTACCGATGTTAATGTGTCAGTGTAATGTGTTGTGATTGTGTTTGATTCAATTATACTTCATAGGTTGAAACATTGGATATGGCAATGTAACCAAGGTTTATCCCAAAAATATAGCAATGTATTTGTCTCTATGCATCTGTTTGATTTTGAAAAATGTCTTTGCCAAAAATAGTAGAAACAAACAAAGTTGCTAAAAATAGTTCGATACAATACAAGAATATTTTACCTTGCAATAAATGTAACTTCTTTTTCTTTTTAAGTTTAATGTAATGCTATTATTGTTCAAGTGTTGGGGTTTGTGTCAATTTGTAAAATAACAATACCGTTTAATTTAACAGTGTTTGTTTTAGTGTACGGAAATTGTTGTGTTTTGTTTTGTGATGAAAGTTTGGAATGTGTGATTTCAATTGTAGAGGATGCAAGTTTTCATTAGAGGAAGAAAGGGTGGTGATTGAACTACAGGGCCAATTTGGGAACAAATGGGCCAAAATTGCTACATATTTGGAAGGGAGAACTGACAATGATGTGAAGAATTTTTGGAGTAGCAGGAGAAAAAGGATGGAGAGGAATTATCCAAGGACACCATCACCACCATCAAAGCAGCAGAAACACAAGGGAAAAGCTACTTCAAATCAAGTAAAAGTTGAAAAGGTTAAGTGAAAATGTTTTTCTCTTCAAACTTGTACATAAAGTTTTTCTAAAACAAGTGAGTTATGTTTTGAAATAGATTCTCCGTGATTACATAATCATTTTGAAATGTCCAATTTTGTTCGGATACTTCACATTTTGACTTCGTGTTTTGTACCTACATTGCAATGAAATGTCCAATTTTGTTCGGATACTTCACATTTTGACTTCGTGTTTTGTACATACATTGCAAATTTGTAATATGAATCATCCGATTAACATCGGACACTAGAATCTTGATCGTATGACCGCGTGAATGCAGGGTTATCTCGATAAACGATAATTTTAGTGTGAAGGGTTTTTCAAAATACACTTGATCTATTACATGAAAGATTAGAAAGTATGGACTTAATAGTGAAAATGTCTATTTCAGGTTCCTGAATGTGGTTCAAATCAGCTTGAGGAAAATCTTACTCACCCAACTTCTTATATGGGAAACAAAGAGGAGTTCAAGATGATCAACCTTCCAGATTTAACAAAGCCAAACTACCAAAATTTGGAAAGTGAACTAAATGGAATTATTGAGTTTGAGGCCACTCCACTTCACACAGTACCCTCATTTGAGTCTTCATCAGCAAACAACTTTCCATTACTCCCTGAATCACAGATGGACTTTCCACTATTCCCAGAGTGCCAAGACCTTGTTCAAGATCCCTTTGACCCCAATTTTATGGACATGTTTGAGCAGAAAAAATGTTCAGAAAGTGTTTGGAGCAAGAAGAATGGAACTAGGTTGCCAAGTCTTGGACTTGAAGGAAATTCTCAGAGTACAAGTTCAAACTGCTTCTTTCAGGACATTCCAACTGAGATTTTTGAATACTTTTCTCAGTAA
Protein sequence

>MS.gene48788.t1

MEREYERGYIKKGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSLEEERVVIELQGQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRMERNYPRTPSPPSKQQKHKGKATSNQVKVEKVPECGSNQLEENLTHPTSYMGNKEEFKMINLPDLTKPNYQNLESELNGIIEFEATPLHTVPSFESSSANNFPLLPESQMDFPLFPECQDLVQDPFDPNFMDMFEQKKCSESVWSKKNGTRLPSLGLEGNSQSTSSNCFFQDIPTEIFEYFSQ