Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48809.t1 | XP_024632961.1 | 88.4 | 363 | 25 | 3 | 1 | 347 | 1 | 362 | 1.00E-165 | 592.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48809.t1 | Q9SZL8 | 29.7 | 306 | 197 | 5 | 42 | 347 | 72 | 359 | 1.2e-34 | 148.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48809.t1 | D3YBB9 | 80.1 | 307 | 60 | 1 | 41 | 347 | 81 | 386 | 1.1e-140 | 509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48809.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48809.t1 | MTR_0558s0020 | 90.132 | 304 | 22 | 2 | 1 | 304 | 1 | 296 | 0.0 | 568 |
| MS.gene48809.t1 | MTR_1g083640 | 89.199 | 287 | 22 | 2 | 1 | 279 | 1 | 286 | 0.0 | 531 |
| MS.gene48809.t1 | MTR_8g446020 | 77.632 | 304 | 20 | 3 | 1 | 304 | 1 | 256 | 2.61e-166 | 464 |
| MS.gene48809.t1 | MTR_2g014100 | 90.650 | 246 | 21 | 2 | 1 | 245 | 1 | 245 | 8.21e-163 | 455 |
| MS.gene48809.t1 | MTR_6g090505 | 88.235 | 238 | 27 | 1 | 73 | 310 | 1 | 237 | 5.68e-153 | 434 |
| MS.gene48809.t1 | MTR_0337s0040 | 74.721 | 269 | 21 | 3 | 1 | 269 | 1 | 222 | 3.45e-137 | 389 |
| MS.gene48809.t1 | MTR_3g008240 | 87.678 | 211 | 18 | 2 | 1 | 211 | 1 | 203 | 2.70e-134 | 381 |
| MS.gene48809.t1 | MTR_4g040430 | 86.256 | 211 | 16 | 3 | 1 | 211 | 1 | 198 | 2.74e-129 | 368 |
| MS.gene48809.t1 | MTR_5g071590 | 81.768 | 181 | 27 | 2 | 1 | 176 | 1 | 180 | 1.95e-107 | 312 |
| MS.gene48809.t1 | MTR_1g055240 | 89.933 | 149 | 14 | 1 | 98 | 246 | 2 | 149 | 8.22e-96 | 281 |
| MS.gene48809.t1 | MTR_0019s0290 | 90.411 | 146 | 13 | 1 | 97 | 242 | 16 | 160 | 5.23e-95 | 280 |
| MS.gene48809.t1 | MTR_1281s0010 | 90.909 | 110 | 9 | 1 | 27 | 136 | 1 | 109 | 4.41e-67 | 206 |
| MS.gene48809.t1 | MTR_8g046060 | 88.636 | 88 | 9 | 1 | 1 | 87 | 91 | 178 | 3.41e-43 | 149 |
| MS.gene48809.t1 | MTR_6g051425 | 31.119 | 286 | 177 | 5 | 48 | 331 | 22 | 289 | 8.59e-39 | 141 |
| MS.gene48809.t1 | MTR_4g008820 | 81.609 | 87 | 9 | 1 | 1 | 87 | 125 | 204 | 2.42e-37 | 142 |
| MS.gene48809.t1 | MTR_1g070355 | 27.559 | 254 | 160 | 6 | 49 | 300 | 80 | 311 | 7.35e-18 | 85.1 |
| MS.gene48809.t1 | MTR_1g013060 | 30.093 | 216 | 133 | 7 | 48 | 262 | 29 | 227 | 1.48e-14 | 72.4 |
| MS.gene48809.t1 | MTR_0402s0040 | 25.668 | 187 | 117 | 4 | 57 | 242 | 40 | 205 | 9.35e-14 | 72.4 |
| MS.gene48809.t1 | MTR_0337s0050 | 83.333 | 36 | 6 | 0 | 268 | 303 | 14 | 49 | 1.20e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48809.t1 | AT4G38180 | 29.904 | 311 | 190 | 6 | 42 | 347 | 72 | 359 | 7.82e-38 | 144 |
| MS.gene48809.t1 | AT5G28530 | 26.923 | 312 | 197 | 7 | 48 | 347 | 60 | 352 | 2.91e-26 | 110 |
| MS.gene48809.t1 | AT5G28530 | 26.923 | 312 | 197 | 7 | 48 | 347 | 60 | 352 | 2.91e-26 | 110 |
| MS.gene48809.t1 | AT5G28530 | 26.923 | 312 | 197 | 7 | 48 | 347 | 60 | 352 | 3.47e-26 | 110 |
| MS.gene48809.t1 | AT3G06250 | 26.250 | 320 | 171 | 7 | 31 | 347 | 178 | 435 | 4.14e-25 | 107 |
| MS.gene48809.t1 | AT3G06250 | 26.250 | 320 | 171 | 7 | 31 | 347 | 178 | 435 | 4.14e-25 | 107 |
| MS.gene48809.t1 | AT3G06250 | 26.250 | 320 | 171 | 7 | 31 | 347 | 178 | 435 | 4.14e-25 | 107 |
| MS.gene48809.t1 | AT1G80010 | 27.885 | 312 | 181 | 11 | 49 | 347 | 101 | 381 | 4.10e-22 | 98.2 |
| MS.gene48809.t1 | AT2G27110 | 34.127 | 126 | 83 | 0 | 222 | 347 | 181 | 306 | 5.04e-22 | 97.8 |
| MS.gene48809.t1 | AT2G27110 | 34.127 | 126 | 83 | 0 | 222 | 347 | 181 | 306 | 5.04e-22 | 97.8 |
| MS.gene48809.t1 | AT2G27110 | 34.127 | 126 | 83 | 0 | 222 | 347 | 36 | 161 | 5.86e-22 | 97.4 |
| MS.gene48809.t1 | AT4G38170 | 42.857 | 105 | 55 | 2 | 244 | 347 | 24 | 124 | 1.09e-21 | 96.3 |
| MS.gene48809.t1 | AT4G15090 | 34.395 | 157 | 100 | 2 | 194 | 347 | 179 | 335 | 5.46e-21 | 94.7 |
| MS.gene48809.t1 | AT4G15090 | 34.395 | 157 | 100 | 2 | 194 | 347 | 179 | 335 | 5.46e-21 | 94.7 |
| MS.gene48809.t1 | AT4G15090 | 34.395 | 157 | 100 | 2 | 194 | 347 | 179 | 335 | 5.46e-21 | 94.7 |
| MS.gene48809.t1 | AT4G15090 | 34.395 | 157 | 100 | 2 | 194 | 347 | 179 | 335 | 5.46e-21 | 94.7 |
| MS.gene48809.t1 | AT4G15090 | 34.395 | 157 | 100 | 2 | 194 | 347 | 179 | 335 | 5.46e-21 | 94.7 |
| MS.gene48809.t1 | AT5G18960 | 24.615 | 325 | 177 | 10 | 29 | 347 | 197 | 459 | 4.49e-20 | 92.0 |
| MS.gene48809.t1 | AT5G18960 | 24.615 | 325 | 177 | 10 | 29 | 347 | 197 | 459 | 4.49e-20 | 92.0 |
| MS.gene48809.t1 | AT1G76320 | 25.329 | 304 | 192 | 8 | 47 | 347 | 1 | 272 | 5.88e-20 | 91.7 |
| MS.gene48809.t1 | AT1G76320 | 25.329 | 304 | 192 | 8 | 47 | 347 | 1 | 272 | 5.88e-20 | 91.7 |
| MS.gene48809.t1 | AT1G76320 | 25.329 | 304 | 192 | 8 | 47 | 347 | 1 | 272 | 5.92e-20 | 91.7 |
| MS.gene48809.t1 | AT1G76320 | 25.329 | 304 | 192 | 8 | 47 | 347 | 1 | 272 | 5.98e-20 | 91.7 |
| MS.gene48809.t1 | AT1G10240 | 23.810 | 294 | 203 | 6 | 57 | 347 | 62 | 337 | 8.56e-20 | 90.9 |
| MS.gene48809.t1 | AT1G10240 | 23.810 | 294 | 203 | 6 | 57 | 347 | 62 | 337 | 8.56e-20 | 90.9 |
| MS.gene48809.t1 | AT2G32250 | 24.684 | 316 | 171 | 8 | 33 | 347 | 30 | 279 | 2.23e-16 | 80.9 |
| MS.gene48809.t1 | AT2G32250 | 24.684 | 316 | 171 | 8 | 33 | 347 | 30 | 279 | 2.23e-16 | 80.9 |
| MS.gene48809.t1 | AT2G32250 | 24.684 | 316 | 171 | 9 | 33 | 347 | 30 | 279 | 2.25e-16 | 80.9 |
| MS.gene48809.t1 | AT2G32250 | 24.684 | 316 | 171 | 9 | 33 | 347 | 30 | 279 | 2.25e-16 | 80.9 |
| MS.gene48809.t1 | AT2G32250 | 24.684 | 316 | 171 | 9 | 33 | 347 | 30 | 279 | 2.25e-16 | 80.9 |
| MS.gene48809.t1 | AT2G32250 | 24.684 | 316 | 171 | 9 | 33 | 347 | 30 | 279 | 2.32e-16 | 80.9 |
| MS.gene48809.t1 | AT3G22170 | 23.226 | 310 | 204 | 7 | 40 | 347 | 67 | 344 | 2.57e-16 | 80.9 |
| MS.gene48809.t1 | AT3G22170 | 23.226 | 310 | 204 | 7 | 40 | 347 | 67 | 344 | 2.57e-16 | 80.9 |
| MS.gene48809.t1 | AT2G32250 | 24.667 | 300 | 161 | 7 | 49 | 347 | 3 | 238 | 3.41e-16 | 80.1 |
| MS.gene48809.t1 | AT2G32250 | 24.667 | 300 | 161 | 7 | 49 | 347 | 3 | 238 | 3.51e-16 | 80.1 |
| MS.gene48809.t1 | AT1G52520 | 25.914 | 301 | 177 | 11 | 49 | 342 | 91 | 352 | 3.10e-15 | 77.4 |
| MS.gene48809.t1 | AT4G19990 | 31.405 | 121 | 82 | 1 | 228 | 347 | 163 | 283 | 3.06e-13 | 71.2 |
| MS.gene48809.t1 | AT4G19990 | 31.405 | 121 | 82 | 1 | 228 | 347 | 163 | 283 | 3.06e-13 | 71.2 |
| MS.gene48809.t1 | AT4G19990 | 31.405 | 121 | 82 | 1 | 228 | 347 | 106 | 226 | 3.14e-13 | 71.2 |
| MS.gene48809.t1 | AT4G19990 | 31.405 | 121 | 82 | 1 | 228 | 347 | 177 | 297 | 3.65e-13 | 70.9 |
| MS.gene48809.t1 | AT4G19990 | 31.405 | 121 | 82 | 1 | 228 | 347 | 163 | 283 | 3.65e-13 | 70.9 |
| MS.gene48809.t1 | AT4G19990 | 31.405 | 121 | 82 | 1 | 228 | 347 | 163 | 283 | 3.65e-13 | 70.9 |
| MS.gene48809.t1 | AT4G19990 | 31.405 | 121 | 82 | 1 | 228 | 347 | 163 | 283 | 3.72e-13 | 70.9 |
Find 45 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTAGATTATTCTCTATT+TGG | 0.147857 | 4.4:+73739198 | MS.gene48809:CDS |
| TATCGTCTATGGTTTCTTAT+TGG | 0.197055 | 4.4:-73739764 | None:intergenic |
| TACATTTCAGCTGCCTTTAT+TGG | 0.203801 | 4.4:+73739637 | MS.gene48809:intron |
| TCTGATGTTGGCTTGTTGTT+AGG | 0.291501 | 4.4:-73738691 | None:intergenic |
| ATAACACTGGATTCTCTATT+AGG | 0.309117 | 4.4:+73738557 | MS.gene48809:CDS |
| GGCGATATTGATTGTTTGTT+CGG | 0.357702 | 4.4:-73739248 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 4.4:-73739650 | None:intergenic |
| TTTAAGTCCGAAAACCAAAA+AGG | 0.365454 | 4.4:-73739009 | None:intergenic |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 4.4:+73738957 | MS.gene48809:CDS |
| GTACAAAATACTAACCTAAT+GGG | 0.422907 | 4.4:-73739269 | None:intergenic |
| ATGTCTATAAGATATATAGA+TGG | 0.423693 | 4.4:+73738812 | MS.gene48809:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 4.4:+73738970 | MS.gene48809:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4.4:+73738895 | MS.gene48809:CDS |
| AACAATCAATATCGCCCATT+AGG | 0.430510 | 4.4:+73739255 | MS.gene48809:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 4.4:-73738477 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 4.4:-73738478 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4.4:+73738760 | MS.gene48809:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.465202 | 4.4:+73738925 | MS.gene48809:CDS |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 4.4:+73738958 | MS.gene48809:CDS |
| TTACTTCTCGAAATGATCTC+AGG | 0.488412 | 4.4:-73738882 | None:intergenic |
| CTCAGGTAACACAAATGCTC+TGG | 0.496027 | 4.4:-73738865 | None:intergenic |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 4.4:+73738476 | MS.gene48809:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4.4:-73739143 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 4.4:-73738754 | None:intergenic |
| TCTAATGACAATTCGTCAAA+GGG | 0.509205 | 4.4:+73739038 | MS.gene48809:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 4.4:+73738651 | MS.gene48809:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.514358 | 4.4:-73738853 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 4.4:+73738544 | MS.gene48809:CDS |
| TGTCTATAAGATATATAGAT+GGG | 0.523615 | 4.4:+73738813 | MS.gene48809:CDS |
| ACAAAATAAGAAATTAGATA+AGG | 0.530342 | 4.4:+73738606 | MS.gene48809:CDS |
| TTCACAAACTCAATAACCAC+TGG | 0.531770 | 4.4:-73738718 | None:intergenic |
| ATCTAATGACAATTCGTCAA+AGG | 0.534949 | 4.4:+73739037 | MS.gene48809:CDS |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 4.4:-73738476 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 4.4:+73738652 | MS.gene48809:CDS |
| CGTCAAAGGGAGATGGTGGT+TGG | 0.556443 | 4.4:+73739051 | MS.gene48809:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.567659 | 4.4:+73738819 | MS.gene48809:CDS |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 4.4:+73738973 | MS.gene48809:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 4.4:+73738964 | MS.gene48809:CDS |
| TGTTATGTTTGTAACAAACA+AGG | 0.584617 | 4.4:+73738640 | MS.gene48809:CDS |
| GACAATTCGTCAAAGGGAGA+TGG | 0.585343 | 4.4:+73739044 | MS.gene48809:CDS |
| ACCACTGGACTGTCTGATGT+TGG | 0.589854 | 4.4:-73738703 | None:intergenic |
| ATATCAGCTTCATCTGAGAG+TGG | 0.607949 | 4.4:+73738376 | MS.gene48809:CDS |
| AATTCGTCAAAGGGAGATGG+TGG | 0.626295 | 4.4:+73739047 | MS.gene48809:CDS |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 4.4:+73738978 | MS.gene48809:CDS |
| GCCAACATCAGACAGTCCAG+TGG | 0.711751 | 4.4:+73738702 | MS.gene48809:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAGAAATTAGATA+AGG | + | chr4.4:73738606-73738625 | MS.gene48809:CDS | 15.0% |
| !! | ATAAGAAACATAAATGCATT+TGG | - | chr4.4:73739461-73739480 | None:intergenic | 20.0% |
| !! | ATGTCTATAAGATATATAGA+TGG | + | chr4.4:73738812-73738831 | MS.gene48809:CDS | 20.0% |
| !! | TGTCTATAAGATATATAGAT+GGG | + | chr4.4:73738813-73738832 | MS.gene48809:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr4.4:73738523-73738542 | MS.gene48809:CDS | 20.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr4.4:73739273-73739292 | None:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr4.4:73739653-73739672 | None:intergenic | 25.0% |
| ! | CAACTAGATTATTCTCTATT+TGG | + | chr4.4:73739198-73739217 | MS.gene48809:CDS | 25.0% |
| ! | GTACAAAATACTAACCTAAT+GGG | - | chr4.4:73739272-73739291 | None:intergenic | 25.0% |
| ! | TACTAAAGTTCACTAATTGA+GGG | + | chr4.4:73739530-73739549 | MS.gene48809:intron | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | - | chr4.4:73739126-73739145 | None:intergenic | 25.0% |
| ! | TGTTATGTTTGTAACAAACA+AGG | + | chr4.4:73738640-73738659 | MS.gene48809:CDS | 25.0% |
| !! | CATTATGTTGTATTTTGTTC+TGG | + | chr4.4:73739323-73739342 | MS.gene48809:intron | 25.0% |
| !! | TAGTATTTTGTACTTCTTTC+AGG | + | chr4.4:73739279-73739298 | MS.gene48809:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+AGG | + | chr4.4:73739608-73739627 | MS.gene48809:intron | 25.0% |
| !!! | AGCTGGAATATTTTTTAAGT+TGG | + | chr4.4:73738777-73738796 | MS.gene48809:CDS | 25.0% |
| !!! | CATCGTAAAAGTGTTTTATT+TGG | + | chr4.4:73739670-73739689 | MS.gene48809:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr4.4:73738925-73738944 | MS.gene48809:CDS | 25.0% |
| AACAAACAAGGTTTCAAGAA+GGG | + | chr4.4:73738652-73738671 | MS.gene48809:CDS | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr4.4:73738958-73738977 | MS.gene48809:CDS | 30.0% | |
| ATAACACTGGATTCTCTATT+AGG | + | chr4.4:73738557-73738576 | MS.gene48809:CDS | 30.0% | |
| ATCTAATGACAATTCGTCAA+AGG | + | chr4.4:73739037-73739056 | MS.gene48809:CDS | 30.0% | |
| CTACTAAAGTTCACTAATTG+AGG | + | chr4.4:73739529-73739548 | MS.gene48809:intron | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr4.4:73738544-73738563 | MS.gene48809:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | chr4.4:73738651-73738670 | MS.gene48809:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr4.4:73738819-73738838 | MS.gene48809:CDS | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | - | chr4.4:73738480-73738499 | None:intergenic | 30.0% | |
| TCTAATGACAATTCGTCAAA+GGG | + | chr4.4:73739038-73739057 | MS.gene48809:CDS | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr4.4:73738481-73738500 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAACCAAAA+AGG | - | chr4.4:73739012-73739031 | None:intergenic | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr4.4:73738856-73738875 | None:intergenic | 30.0% |
| ! | AAGACATAGCTAGCATTTTT+GGG | + | chr4.4:73739160-73739179 | MS.gene48809:CDS | 30.0% |
| !!! | GAATCTTCCTTTTTGGTTTT+CGG | + | chr4.4:73739002-73739021 | MS.gene48809:CDS | 30.0% |
| AAAGTTCACTAATTGAGGGT+TGG | + | chr4.4:73739534-73739553 | MS.gene48809:intron | 35.0% | |
| AACAATCAATATCGCCCATT+AGG | + | chr4.4:73739255-73739274 | MS.gene48809:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr4.4:73738479-73738498 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr4.4:73738895-73738914 | MS.gene48809:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr4.4:73738744-73738763 | MS.gene48809:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr4.4:73738738-73738757 | MS.gene48809:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr4.4:73738957-73738976 | MS.gene48809:CDS | 35.0% | |
| GATCTCTTAAACTACAGACT+CGG | - | chr4.4:73739415-73739434 | None:intergenic | 35.0% | |
| TACATTTCAGCTGCCTTTAT+TGG | + | chr4.4:73739637-73739656 | MS.gene48809:intron | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | + | chr4.4:73738964-73738983 | MS.gene48809:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr4.4:73738743-73738762 | MS.gene48809:CDS | 35.0% | |
| TTACTTCTCGAAATGATCTC+AGG | - | chr4.4:73738885-73738904 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCAC+TGG | - | chr4.4:73738721-73738740 | None:intergenic | 35.0% | |
| ! | AGACATAGCTAGCATTTTTG+GGG | + | chr4.4:73739161-73739180 | MS.gene48809:CDS | 35.0% |
| ! | GAAGACATAGCTAGCATTTT+TGG | + | chr4.4:73739159-73739178 | MS.gene48809:CDS | 35.0% |
| ! | GGCGATATTGATTGTTTGTT+CGG | - | chr4.4:73739251-73739270 | None:intergenic | 35.0% |
| ! | TGTTGTATTTTGTTCTGGCA+TGG | + | chr4.4:73739328-73739347 | MS.gene48809:intron | 35.0% |
| ! | TTTTGAACTGCATAGTGTCT+AGG | + | chr4.4:73739371-73739390 | MS.gene48809:intron | 35.0% |
| ATATCAGCTTCATCTGAGAG+TGG | + | chr4.4:73738376-73738395 | MS.gene48809:CDS | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr4.4:73738476-73738495 | MS.gene48809:CDS | 40.0% | |
| TGTTCTGGCATGGATAGTAT+AGG | + | chr4.4:73739338-73739357 | MS.gene48809:intron | 40.0% | |
| !! | TCTGATGTTGGCTTGTTGTT+AGG | - | chr4.4:73738694-73738713 | None:intergenic | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr4.4:73739713-73739732 | MS.gene48809:CDS | 40.0% |
| AATTCGTCAAAGGGAGATGG+TGG | + | chr4.4:73739047-73739066 | MS.gene48809:CDS | 45.0% | |
| CTCAGGTAACACAAATGCTC+TGG | - | chr4.4:73738868-73738887 | None:intergenic | 45.0% | |
| CTGGCATGGATAGTATAGGT+AGG | + | chr4.4:73739342-73739361 | MS.gene48809:intron | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr4.4:73738748-73738767 | MS.gene48809:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | chr4.4:73738970-73738989 | MS.gene48809:CDS | 45.0% | |
| GACAATTCGTCAAAGGGAGA+TGG | + | chr4.4:73739044-73739063 | MS.gene48809:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr4.4:73739146-73739165 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr4.4:73738757-73738776 | None:intergenic | 45.0% | |
| ! | GCACGGAGAATCTTCCTTTT+TGG | + | chr4.4:73738995-73739014 | MS.gene48809:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4.4:73738760-73738779 | MS.gene48809:CDS | 45.0% |
| ACCACTGGACTGTCTGATGT+TGG | - | chr4.4:73738706-73738725 | None:intergenic | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | chr4.4:73738973-73738992 | MS.gene48809:CDS | 50.0% | |
| !!! | GCTAGCATTTTTGGGGCAGA+TGG | + | chr4.4:73739168-73739187 | MS.gene48809:CDS | 50.0% |
| GCCAACATCAGACAGTCCAG+TGG | + | chr4.4:73738702-73738721 | MS.gene48809:CDS | 55.0% | |
| ! | CGTCAAAGGGAGATGGTGGT+TGG | + | chr4.4:73739051-73739070 | MS.gene48809:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr4.4:73738978-73738997 | MS.gene48809:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 73738367 | 73739780 | 73738367 | ID=MS.gene48809 |
| chr4.4 | mRNA | 73738367 | 73739780 | 73738367 | ID=MS.gene48809.t1;Parent=MS.gene48809 |
| chr4.4 | exon | 73738367 | 73739276 | 73738367 | ID=MS.gene48809.t1.exon1;Parent=MS.gene48809.t1 |
| chr4.4 | CDS | 73738367 | 73739276 | 73738367 | ID=cds.MS.gene48809.t1;Parent=MS.gene48809.t1 |
| chr4.4 | exon | 73739647 | 73739780 | 73739647 | ID=MS.gene48809.t1.exon2;Parent=MS.gene48809.t1 |
| chr4.4 | CDS | 73739647 | 73739780 | 73739647 | ID=cds.MS.gene48809.t1;Parent=MS.gene48809.t1 |
| Gene Sequence |
| Protein sequence |
