AlfalfaGEDB | MS.gene48809

M. sativa cultivar XinJiangDaYe / MS.gene48809

KEGG: -
GO: -
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48809.t1	XP_024632961.1	88.4	363	25	3	1	347	1	362	1.00E-165	592.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48809.t1	Q9SZL8	29.7	306	197	5	42	347	72	359	1.2e-34	148.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48809.t1	D3YBB9	80.1	307	60	1	41	347	81	386	1.1e-140	509.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene48809.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48809.t1	MTR_0558s0020	90.132	304	22	2	1	304	1	296	0.0	568
MS.gene48809.t1	MTR_1g083640	89.199	287	22	2	1	279	1	286	0.0	531
MS.gene48809.t1	MTR_8g446020	77.632	304	20	3	1	304	1	256	2.61e-166	464
MS.gene48809.t1	MTR_2g014100	90.650	246	21	2	1	245	1	245	8.21e-163	455
MS.gene48809.t1	MTR_6g090505	88.235	238	27	1	73	310	1	237	5.68e-153	434
MS.gene48809.t1	MTR_0337s0040	74.721	269	21	3	1	269	1	222	3.45e-137	389
MS.gene48809.t1	MTR_3g008240	87.678	211	18	2	1	211	1	203	2.70e-134	381
MS.gene48809.t1	MTR_4g040430	86.256	211	16	3	1	211	1	198	2.74e-129	368
MS.gene48809.t1	MTR_5g071590	81.768	181	27	2	1	176	1	180	1.95e-107	312
MS.gene48809.t1	MTR_1g055240	89.933	149	14	1	98	246	2	149	8.22e-96	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48809.t1	AT4G38180	29.904	311	190	6	42	347	72	359	7.82e-38	144
MS.gene48809.t1	AT5G28530	26.923	312	197	7	48	347	60	352	2.91e-26	110
MS.gene48809.t1	AT5G28530	26.923	312	197	7	48	347	60	352	2.91e-26	110
MS.gene48809.t1	AT5G28530	26.923	312	197	7	48	347	60	352	3.47e-26	110
MS.gene48809.t1	AT3G06250	26.250	320	171	7	31	347	178	435	4.14e-25	107
MS.gene48809.t1	AT3G06250	26.250	320	171	7	31	347	178	435	4.14e-25	107
MS.gene48809.t1	AT3G06250	26.250	320	171	7	31	347	178	435	4.14e-25	107
MS.gene48809.t1	AT1G80010	27.885	312	181	11	49	347	101	381	4.10e-22	98.2
MS.gene48809.t1	AT2G27110	34.127	126	83	0	222	347	181	306	5.04e-22	97.8
MS.gene48809.t1	AT2G27110	34.127	126	83	0	222	347	181	306	5.04e-22	97.8

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Find 45 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTCTGGTTTATGTAA+TGG	0.514358	4.4:-73738853	None:intergenic
AACAAACAAGGTTTCAAGAA+GGG	0.554561	4.4:+73738652	MS.gene48809:CDS
AACAATCAATATCGCCCATT+AGG	0.430510	4.4:+73739255	MS.gene48809:CDS
AATTCGTCAAAGGGAGATGG+TGG	0.626295	4.4:+73739047	MS.gene48809:CDS
ACAAAATAAGAAATTAGATA+AGG	0.530342	4.4:+73738606	MS.gene48809:CDS
ACCACTGGACTGTCTGATGT+TGG	0.589854	4.4:-73738703	None:intergenic
AGAACGTCTTATGAAGTTAT+GGG	0.466325	4.4:+73738958	MS.gene48809:CDS
ATAACACTGGATTCTCTATT+AGG	0.309117	4.4:+73738557	MS.gene48809:CDS
ATATCAGCTTCATCTGAGAG+TGG	0.607949	4.4:+73738376	MS.gene48809:CDS
ATCTAATGACAATTCGTCAA+AGG	0.534949	4.4:+73739037	MS.gene48809:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAACAAGGTTTCAAGAA+GGG	+	chr4.4:73738652-73738671	MS.gene48809:CDS	30.0%
AGAACGTCTTATGAAGTTAT+GGG	+	chr4.4:73738958-73738977	MS.gene48809:CDS	30.0%
ATAACACTGGATTCTCTATT+AGG	+	chr4.4:73738557-73738576	MS.gene48809:CDS	30.0%
ATCTAATGACAATTCGTCAA+AGG	+	chr4.4:73739037-73739056	MS.gene48809:CDS	30.0%
CTACTAAAGTTCACTAATTG+AGG	+	chr4.4:73739529-73739548	MS.gene48809:intron	30.0%
GGTAATTATGCATATAACAC+TGG	+	chr4.4:73738544-73738563	MS.gene48809:CDS	30.0%
TAACAAACAAGGTTTCAAGA+AGG	+	chr4.4:73738651-73738670	MS.gene48809:CDS	30.0%
TAAGATATATAGATGGGATG+TGG	+	chr4.4:73738819-73738838	MS.gene48809:CDS	30.0%
TCCATGATTCTTTATTGCTA+GGG	-	chr4.4:73738480-73738499	None:intergenic	30.0%
TCTAATGACAATTCGTCAAA+GGG	+	chr4.4:73739038-73739057	MS.gene48809:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	73738367	73739780	73738367	ID=MS.gene48809
chr4.4	mRNA	73738367	73739780	73738367	ID=MS.gene48809.t1;Parent=MS.gene48809
chr4.4	exon	73738367	73739276	73738367	ID=MS.gene48809.t1.exon1;Parent=MS.gene48809.t1
chr4.4	CDS	73738367	73739276	73738367	ID=cds.MS.gene48809.t1;Parent=MS.gene48809.t1
chr4.4	exon	73739647	73739780	73739647	ID=MS.gene48809.t1.exon2;Parent=MS.gene48809.t1
chr4.4	CDS	73739647	73739780	73739647	ID=cds.MS.gene48809.t1;Parent=MS.gene48809.t1

Gene Sequence

>MS.gene48809

ATGGATTTGATATCAGCTTCATCTGAGAGTGGACAATTGACTGTTGAAACTTCATCACTGATTCATGCTGATAGTTCACTGATTCATGCTGATAGTTCTCAATGTTACTCCCCTAGCAATAAAGAATCATGGAAGTCTTTAGTCTTTGAATCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTCTCTATTAGGAGTATGTTGAAGTCGAAAAACAATTCACAAAATAAGAAATTAGATAAGGTACATTATCTGTGTTATGTTTGTAACAAACAAGGTTTCAAGAAGGGAAGTCTGCTTTTTAATCCTAACAACAAGCCAACATCAGACAGTCCAGTGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTTGGTTGTAAAGCTGGAATATTTTTTAAGTTGGATGAAGTTTTGAATGTCTATAAGATATATAGATGGGATGTGGCTCACTGTCATCCATTACATAAACCAGAGCATTTGTGTTACCTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTCGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTTATGAAGTTATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTTGGTTTTCGGACTTAAAGAACTATCTAATGACAATTCGTCAAAGGGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAAAAATGAAGCTCTCTCGAAACCATCTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGCATTTTTGGGGCAGATGGAATTATGCAACTAGATTATTCTCTATTTGGCGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATCAATATCGCCCATTAGGTTAGTATTTTGTACTTCTTTCAGGTTTTAAATTAGTGTTTACTTTCATTATGTTGTATTTTGTTCTGGCATGGATAGTATAGGTAGGAGTACATTTTGAACTGCATAGTGTCTAGGTGTGTGTGTCATATGTGTCCGAGTCTGTAGTTTAAGAGATCTCTAGTCTACTGATTTTTTTTTTCCAAATGCATTTATGTTTCTTATAATTTCTAATGATAGATAGTTACAGATTATTAGAGTAAATGTCTCTAGCTACTAAAGTTCACTAATTGAGGGTTGGAATGCACTTAAATTAGTGATTGCTTTCATGATTTAGTGTAATTTATATATATGTTGTATTTTGTTCTGATTAGGTTCATTTACATTTCAGCTGCCTTTATTGGTTTTGACAATCATCGTAAAAGTGTTTTATTTGGTGCTGCGCTACTGTATGATGAGACAGCAGCTACTTTTGATTGGTTGTTTACAACATTCGTGCAGTGCATGTCCAATAAGAAACCATAG

Protein sequence

>MS.gene48809.t1

MDLISASSESGQLTVETSSLIHADSSLIHADSSQCYSPSNKESWKSLVFESIKEIEDFYGNYAYNTGFSIRSMLKSKNNSQNKKLDKVHYLCYVCNKQGFKKGSLLFNPNNKPTSDSPVVIEFVKVKEKPEERVGCKAGIFFKLDEVLNVYKIYRWDVAHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFWFSDLKNYLMTIRQREMVVGEATVIQEFFKNEALSKPSFYYDIQVDAAEDIASIFGADGIMQLDYSLFGDVISFDTTYRTNNQYRPLAAFIGFDNHRKSVLFGAALLYDETAATFDWLFTTFVQCMSNKKP