Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48844.t1 | XP_003605324.2 | 92.3 | 454 | 34 | 1 | 1 | 453 | 32 | 485 | 4.20E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48844.t1 | O65499 | 29.0 | 310 | 131 | 8 | 35 | 344 | 64 | 284 | 7.0e-22 | 106.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48844.t1 | G7JJH5 | 92.3 | 454 | 34 | 1 | 1 | 453 | 32 | 485 | 3.0e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48844.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48844.t1 | MTR_4g028610 | 97.357 | 454 | 11 | 1 | 1 | 453 | 32 | 485 | 0.0 | 917 |
| MS.gene48844.t1 | MTR_4g109340 | 39.130 | 161 | 78 | 4 | 193 | 350 | 345 | 488 | 5.15e-25 | 107 |
| MS.gene48844.t1 | MTR_1g090703 | 35.345 | 232 | 113 | 10 | 127 | 349 | 98 | 301 | 2.26e-23 | 101 |
| MS.gene48844.t1 | MTR_5g062300 | 40.940 | 149 | 67 | 2 | 196 | 344 | 119 | 246 | 1.87e-21 | 93.6 |
| MS.gene48844.t1 | MTR_5g099040 | 44.737 | 114 | 49 | 3 | 196 | 304 | 130 | 234 | 9.49e-21 | 92.4 |
| MS.gene48844.t1 | MTR_0160s0030 | 36.905 | 168 | 48 | 5 | 184 | 351 | 231 | 340 | 1.82e-20 | 92.8 |
| MS.gene48844.t1 | MTR_1g106730 | 33.000 | 200 | 50 | 7 | 105 | 304 | 39 | 154 | 4.47e-19 | 87.0 |
| MS.gene48844.t1 | MTR_1g062780 | 34.978 | 223 | 106 | 10 | 130 | 349 | 80 | 266 | 1.88e-16 | 80.1 |
| MS.gene48844.t1 | MTR_3g102980 | 27.953 | 254 | 93 | 6 | 103 | 348 | 30 | 201 | 4.77e-16 | 77.8 |
| MS.gene48844.t1 | MTR_2g084315 | 30.041 | 243 | 115 | 9 | 127 | 349 | 67 | 274 | 8.26e-16 | 78.2 |
| MS.gene48844.t1 | MTR_4g057230 | 36.686 | 169 | 75 | 6 | 195 | 349 | 112 | 262 | 6.47e-15 | 75.5 |
| MS.gene48844.t1 | MTR_1g018420 | 29.817 | 218 | 87 | 6 | 126 | 333 | 38 | 199 | 3.82e-14 | 72.0 |
| MS.gene48844.t1 | MTR_1g077730 | 29.224 | 219 | 113 | 9 | 146 | 348 | 1 | 193 | 2.92e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48844.t1 | AT1G02040 | 36.842 | 247 | 98 | 8 | 105 | 346 | 89 | 282 | 4.55e-32 | 125 |
| MS.gene48844.t1 | AT4G35280 | 30.000 | 310 | 128 | 9 | 35 | 344 | 64 | 284 | 2.97e-27 | 110 |
| MS.gene48844.t1 | AT2G17180 | 29.811 | 265 | 99 | 6 | 40 | 304 | 57 | 234 | 1.58e-25 | 105 |
| MS.gene48844.t1 | AT5G03510 | 31.835 | 267 | 143 | 9 | 101 | 364 | 43 | 273 | 6.42e-22 | 95.9 |
| MS.gene48844.t1 | AT2G28200 | 32.377 | 244 | 114 | 9 | 117 | 349 | 58 | 261 | 4.64e-20 | 90.5 |
| MS.gene48844.t1 | AT3G60580 | 30.531 | 226 | 89 | 6 | 125 | 350 | 121 | 278 | 1.15e-19 | 89.4 |
| MS.gene48844.t1 | AT5G04390 | 29.457 | 258 | 111 | 9 | 127 | 349 | 96 | 317 | 4.04e-19 | 89.0 |
| MS.gene48844.t1 | AT3G10470 | 33.523 | 176 | 89 | 3 | 195 | 349 | 181 | 349 | 2.35e-18 | 87.0 |
| MS.gene48844.t1 | AT5G56200 | 34.483 | 145 | 68 | 2 | 198 | 331 | 344 | 472 | 2.37e-18 | 87.8 |
| MS.gene48844.t1 | AT1G02030 | 29.595 | 321 | 139 | 10 | 47 | 350 | 7 | 257 | 5.22e-18 | 84.3 |
| MS.gene48844.t1 | AT3G49930 | 31.188 | 202 | 74 | 5 | 103 | 304 | 36 | 172 | 5.88e-18 | 82.8 |
| MS.gene48844.t1 | AT5G67450 | 31.220 | 205 | 88 | 6 | 103 | 304 | 33 | 187 | 7.21e-17 | 80.5 |
| MS.gene48844.t1 | AT1G49900 | 36.364 | 110 | 37 | 3 | 195 | 304 | 192 | 268 | 1.20e-12 | 70.9 |
Find 90 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAATAACCCTACATTAA+TGG | 0.180867 | 4.4:+74392230 | MS.gene48844:CDS |
| ATTTAGGTATTTGTTCTATT+TGG | 0.213723 | 4.4:-74392410 | None:intergenic |
| TCTGCCATGGCGTCGGATTC+TGG | 0.241406 | 4.4:-74391688 | None:intergenic |
| AGCCATTAATGTAGGGTTAT+TGG | 0.241430 | 4.4:-74392232 | None:intergenic |
| TCAGAAGAGTTATCAAATTT+AGG | 0.259764 | 4.4:-74392426 | None:intergenic |
| GGCAAAATTAAGTGAGTTAA+AGG | 0.281586 | 4.4:+74392698 | MS.gene48844:CDS |
| AATGGTGCAATGAAATTCAT+AGG | 0.324641 | 4.4:-74391937 | None:intergenic |
| TTCAATTCACATCAAGCATT+AGG | 0.345187 | 4.4:+74392054 | MS.gene48844:CDS |
| TTGTCGGAGCCGGAAGATTA+AGG | 0.360072 | 4.4:-74392470 | None:intergenic |
| CCATGGTTGCAAGTTGGAAT+TGG | 0.363083 | 4.4:+74392750 | MS.gene48844:CDS |
| GAATACATACGTTTGTTACT+TGG | 0.377167 | 4.4:-74391526 | None:intergenic |
| CAAACTTGACCTTAATCTTC+CGG | 0.388092 | 4.4:+74392461 | MS.gene48844:CDS |
| TGTCATAGGAGTTTCTCTTC+AGG | 0.389107 | 4.4:+74392297 | MS.gene48844:CDS |
| AAACAACAATAACAACAATA+AGG | 0.396628 | 4.4:+74391981 | MS.gene48844:CDS |
| TTCTCTTCAGGACAAGCATT+AGG | 0.410263 | 4.4:+74392309 | MS.gene48844:CDS |
| AGGTCAAGTTTGAGATCAAT+TGG | 0.419542 | 4.4:-74392450 | None:intergenic |
| AATTGAACATTCATGCACTT+TGG | 0.420744 | 4.4:-74392274 | None:intergenic |
| GCTGAGGCACATGATTCTTC+CGG | 0.421597 | 4.4:-74391889 | None:intergenic |
| AGATCTTCTTCTTCACTTGA+AGG | 0.423728 | 4.4:-74391811 | None:intergenic |
| AATACATACGTTTGTTACTT+GGG | 0.430068 | 4.4:-74391525 | None:intergenic |
| CGATGATCCGGCGAGCGATT+GGG | 0.433783 | 4.4:+74391486 | MS.gene48844:CDS |
| CCATAGAGCAAGTCACAAAA+AGG | 0.435253 | 4.4:+74392080 | MS.gene48844:CDS |
| TCAAATGGACGACGATGATC+CGG | 0.438069 | 4.4:+74391474 | MS.gene48844:CDS |
| AAGTAAATTTGTGTATTTGT+CGG | 0.443913 | 4.4:-74392486 | None:intergenic |
| ATGAATGTTCAATTTGTCAT+AGG | 0.448297 | 4.4:+74392283 | MS.gene48844:CDS |
| GATGAAGAAGCCATTAATGT+AGG | 0.452698 | 4.4:-74392240 | None:intergenic |
| TTCTTCATCTTTGCTAGCTG+AGG | 0.456328 | 4.4:-74391905 | None:intergenic |
| ACGATGATCCGGCGAGCGAT+TGG | 0.463862 | 4.4:+74391485 | MS.gene48844:CDS |
| AAGGATGTAATTAACATTGG+TGG | 0.466872 | 4.4:+74392717 | MS.gene48844:CDS |
| ATGGTGATGGCGTCAGTGGC+AGG | 0.472265 | 4.4:+74391713 | MS.gene48844:CDS |
| TGATCCTCTTGAGGTTGAAC+CGG | 0.478585 | 4.4:+74391870 | MS.gene48844:CDS |
| AGGCGATGAAACAAGTCAAA+TGG | 0.487942 | 4.4:+74391459 | MS.gene48844:CDS |
| TCCTCAACAATACTATCCTC+AGG | 0.492270 | 4.4:-74392138 | None:intergenic |
| AAATTTACTTGCAACCAACA+TGG | 0.497835 | 4.4:+74392499 | MS.gene48844:CDS |
| TGCTATTGTTGATCCTCTTG+AGG | 0.500759 | 4.4:+74391861 | MS.gene48844:CDS |
| AATTTACTTGCAACCAACAT+GGG | 0.509114 | 4.4:+74392500 | MS.gene48844:CDS |
| AGATGATAGCAAGGTTAAGC+TGG | 0.510318 | 4.4:+74392677 | MS.gene48844:CDS |
| AAGGCCAAAGGTGTTGCAAA+AGG | 0.512681 | 4.4:+74392000 | MS.gene48844:CDS |
| GAGGATGTGGCTGGTCGAAA+AGG | 0.514988 | 4.4:+74391737 | MS.gene48844:CDS |
| CCGGCGAGCGATTGGGAAGG+TGG | 0.515356 | 4.4:+74391493 | MS.gene48844:CDS |
| AAACAACAACCTTAATGCAT+TGG | 0.516007 | 4.4:+74392635 | MS.gene48844:CDS |
| TTAAAGGATGTAATTAACAT+TGG | 0.518467 | 4.4:+74392714 | MS.gene48844:CDS |
| AGGTCGATGCGAACTAAAGT+AGG | 0.524376 | 4.4:+74391763 | MS.gene48844:CDS |
| GTGGTCACAAGAGATGTCAT+TGG | 0.533236 | 4.4:+74392331 | MS.gene48844:CDS |
| TCTTCACCATGGTTGCAAGT+TGG | 0.534611 | 4.4:+74392744 | MS.gene48844:CDS |
| CCACCTTCCCAATCGCTCGC+CGG | 0.538021 | 4.4:-74391493 | None:intergenic |
| GTCAGTGGCAGGAGAGGATG+TGG | 0.539916 | 4.4:+74391724 | MS.gene48844:CDS |
| TCAACTCTACAATTTGATCA+TGG | 0.541203 | 4.4:+74392204 | MS.gene48844:CDS |
| AAGAGGATCAACAATAGCAT+TGG | 0.543537 | 4.4:-74391857 | None:intergenic |
| GACGATGGTGATGGCGTCAG+TGG | 0.546521 | 4.4:+74391709 | MS.gene48844:CDS |
| CCAATTCCAACTTGCAACCA+TGG | 0.547493 | 4.4:-74392750 | None:intergenic |
| ATGAAGAAGCCATTAATGTA+GGG | 0.551910 | 4.4:-74392239 | None:intergenic |
| CTAGCCAATGTTGATGTGTC+GGG | 0.553643 | 4.4:-74392369 | None:intergenic |
| GGAGGACATATGAGAGCTCA+TGG | 0.556898 | 4.4:+74391433 | None:intergenic |
| ATTTGTGTATTTGTCGGAGC+CGG | 0.557536 | 4.4:-74392480 | None:intergenic |
| GTGGCTGGTCGAAAAGGAAA+AGG | 0.562748 | 4.4:+74391743 | MS.gene48844:CDS |
| ATACATACGTTTGTTACTTG+GGG | 0.565623 | 4.4:-74391524 | None:intergenic |
| CTCTCCAGAATCCGACGCCA+TGG | 0.566778 | 4.4:+74391684 | MS.gene48844:CDS |
| CCCTGAGGATAGTATTGTTG+AGG | 0.568665 | 4.4:+74392137 | MS.gene48844:CDS |
| CATATGAGAGCTCATGGCAT+AGG | 0.569691 | 4.4:+74391439 | None:intergenic |
| GCCATCACCATCGTCTGCCA+TGG | 0.569907 | 4.4:-74391701 | None:intergenic |
| ATGGTGCAATGAAATTCATA+GGG | 0.570005 | 4.4:-74391936 | None:intergenic |
| TGGAAATCATTCCTTGAACA+CGG | 0.573812 | 4.4:+74391619 | MS.gene48844:CDS |
| CCTAGCCAATGTTGATGTGT+CGG | 0.581613 | 4.4:-74392370 | None:intergenic |
| AATTCACATCAAGCATTAGG+TGG | 0.583717 | 4.4:+74392057 | MS.gene48844:CDS |
| GTGGCAGGAGAGGATGTGGC+TGG | 0.584863 | 4.4:+74391728 | MS.gene48844:CDS |
| CTTGAATTTGCACCCCATGT+TGG | 0.585693 | 4.4:-74392513 | None:intergenic |
| ACATACGTTTGTTACTTGGG+GGG | 0.594726 | 4.4:-74391522 | None:intergenic |
| TGCACCCGACACATCAACAT+TGG | 0.597550 | 4.4:+74392365 | MS.gene48844:CDS |
| CCGACACATCAACATTGGCT+AGG | 0.600465 | 4.4:+74392370 | MS.gene48844:CDS |
| ACCATCGTCTGCCATGGCGT+CGG | 0.604106 | 4.4:-74391695 | None:intergenic |
| TCTTCCGGTTCAACCTCAAG+AGG | 0.608243 | 4.4:-74391874 | None:intergenic |
| TACATACGTTTGTTACTTGG+GGG | 0.612841 | 4.4:-74391523 | None:intergenic |
| CCTCAACAATACTATCCTCA+GGG | 0.615712 | 4.4:-74392137 | None:intergenic |
| TGCAAATTCAAGTACAACAA+AGG | 0.619130 | 4.4:+74392524 | MS.gene48844:CDS |
| TCTTCAGGACAAGCATTAGG+TGG | 0.619434 | 4.4:+74392312 | MS.gene48844:CDS |
| AATAACAACAATAAGGCCAA+AGG | 0.626216 | 4.4:+74391988 | MS.gene48844:CDS |
| GATGGCGTCAGTGGCAGGAG+AGG | 0.632559 | 4.4:+74391718 | MS.gene48844:CDS |
| ATTTACTTGCAACCAACATG+GGG | 0.643546 | 4.4:+74392501 | MS.gene48844:CDS |
| GCCATGGCAGACGATGGTGA+TGG | 0.647379 | 4.4:+74391700 | MS.gene48844:CDS |
| GATCCGGCGAGCGATTGGGA+AGG | 0.647409 | 4.4:+74391490 | MS.gene48844:CDS |
| TCCGACGCCATGGCAGACGA+TGG | 0.647564 | 4.4:+74391694 | MS.gene48844:CDS |
| TAGGGAATTCTATAAGACAA+TGG | 0.648546 | 4.4:-74391955 | None:intergenic |
| AAAGGACAACAACATCAAAG+AGG | 0.651093 | 4.4:+74392542 | MS.gene48844:CDS |
| TGATGATGAAGATGATAGCA+AGG | 0.659055 | 4.4:+74392668 | MS.gene48844:CDS |
| CATGGCGTCGGATTCTGGAG+AGG | 0.659545 | 4.4:-74391683 | None:intergenic |
| TTGGTGGAAGTTCTTCACCA+TGG | 0.661371 | 4.4:+74392733 | MS.gene48844:CDS |
| TGTAGGGTGTGTGAGCATTG+TGG | 0.711110 | 4.4:+74391580 | MS.gene48844:CDS |
| AAAATGCAACTCAGATGACG+CGG | 0.742662 | 4.4:+74391642 | MS.gene48844:CDS |
| AAGGCTTGATCAAAACCCTG+AGG | 0.762726 | 4.4:+74392122 | MS.gene48844:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAACAATAACAACAATA+AGG | + | chr4.4:74391981-74392000 | MS.gene48844:CDS | 20.0% |
| !! | AAGTAAATTTGTGTATTTGT+CGG | - | chr4.4:74392489-74392508 | None:intergenic | 20.0% |
| !! | ATTTAGGTATTTGTTCTATT+TGG | - | chr4.4:74392413-74392432 | None:intergenic | 20.0% |
| !! | TAATAAGCTAAAAAGTTGTA+GGG | + | chr4.4:74391564-74391583 | MS.gene48844:CDS | 20.0% |
| !! | TTAAAGGATGTAATTAACAT+TGG | + | chr4.4:74392714-74392733 | MS.gene48844:CDS | 20.0% |
| !!! | TTGTTATTGTTGTTTTCATA+GGG | - | chr4.4:74391976-74391995 | None:intergenic | 20.0% |
| !!! | TTTCATTATTTTGATCAACT+AGG | - | chr4.4:74392599-74392618 | None:intergenic | 20.0% |
| ! | ATGAATGTTCAATTTGTCAT+AGG | + | chr4.4:74392283-74392302 | MS.gene48844:CDS | 25.0% |
| ! | CTAATAAGCTAAAAAGTTGT+AGG | + | chr4.4:74391563-74391582 | MS.gene48844:CDS | 25.0% |
| ! | TCAGAAGAGTTATCAAATTT+AGG | - | chr4.4:74392429-74392448 | None:intergenic | 25.0% |
| !! | AATACATACGTTTGTTACTT+GGG | - | chr4.4:74391528-74391547 | None:intergenic | 25.0% |
| !!! | CTACAACTTTTTAGCTTATT+AGG | - | chr4.4:74391565-74391584 | None:intergenic | 25.0% |
| !!! | GGTTTTTGTTTTGATTTTGT+TGG | - | chr4.4:74392578-74392597 | None:intergenic | 25.0% |
| !!! | GTTGTTATTGTTGTTTTCAT+AGG | - | chr4.4:74391977-74391996 | None:intergenic | 25.0% |
| AAACAACAACCTTAATGCAT+TGG | + | chr4.4:74392635-74392654 | MS.gene48844:CDS | 30.0% | |
| AAATTTACTTGCAACCAACA+TGG | + | chr4.4:74392499-74392518 | MS.gene48844:CDS | 30.0% | |
| AAGGATGTAATTAACATTGG+TGG | + | chr4.4:74392717-74392736 | MS.gene48844:CDS | 30.0% | |
| AATAACAACAATAAGGCCAA+AGG | + | chr4.4:74391988-74392007 | MS.gene48844:CDS | 30.0% | |
| AATGGTGCAATGAAATTCAT+AGG | - | chr4.4:74391940-74391959 | None:intergenic | 30.0% | |
| AATTGAACATTCATGCACTT+TGG | - | chr4.4:74392277-74392296 | None:intergenic | 30.0% | |
| AATTTACTTGCAACCAACAT+GGG | + | chr4.4:74392500-74392519 | MS.gene48844:CDS | 30.0% | |
| ATGAAGAAGCCATTAATGTA+GGG | - | chr4.4:74392242-74392261 | None:intergenic | 30.0% | |
| ATGGTGCAATGAAATTCATA+GGG | - | chr4.4:74391939-74391958 | None:intergenic | 30.0% | |
| GGCAAAATTAAGTGAGTTAA+AGG | + | chr4.4:74392698-74392717 | MS.gene48844:CDS | 30.0% | |
| TAGGGAATTCTATAAGACAA+TGG | - | chr4.4:74391958-74391977 | None:intergenic | 30.0% | |
| TCAACTCTACAATTTGATCA+TGG | + | chr4.4:74392204-74392223 | MS.gene48844:CDS | 30.0% | |
| TGCAAATTCAAGTACAACAA+AGG | + | chr4.4:74392524-74392543 | MS.gene48844:CDS | 30.0% | |
| TTCAATTCACATCAAGCATT+AGG | + | chr4.4:74392054-74392073 | MS.gene48844:CDS | 30.0% | |
| TTCCAATAACCCTACATTAA+TGG | + | chr4.4:74392230-74392249 | MS.gene48844:CDS | 30.0% | |
| ! | ATACATACGTTTGTTACTTG+GGG | - | chr4.4:74391527-74391546 | None:intergenic | 30.0% |
| ! | CATTTTGTACCAATGCATTA+AGG | - | chr4.4:74392647-74392666 | None:intergenic | 30.0% |
| ! | GAATACATACGTTTGTTACT+TGG | - | chr4.4:74391529-74391548 | None:intergenic | 30.0% |
| !! | AGAGTTGAGTTTGATTTTGA+AGG | - | chr4.4:74392192-74392211 | None:intergenic | 30.0% |
| !!! | GTGGCAAAGAATTTTTTTCT+TGG | + | chr4.4:74391599-74391618 | MS.gene48844:CDS | 30.0% |
| AAAGGACAACAACATCAAAG+AGG | + | chr4.4:74392542-74392561 | MS.gene48844:CDS | 35.0% | |
| AAGAGGATCAACAATAGCAT+TGG | - | chr4.4:74391860-74391879 | None:intergenic | 35.0% | |
| AATTCACATCAAGCATTAGG+TGG | + | chr4.4:74392057-74392076 | MS.gene48844:CDS | 35.0% | |
| AGATCTTCTTCTTCACTTGA+AGG | - | chr4.4:74391814-74391833 | None:intergenic | 35.0% | |
| AGCAAGTCACAAAAAGGTTA+AGG | + | chr4.4:74392086-74392105 | MS.gene48844:CDS | 35.0% | |
| AGCCATTAATGTAGGGTTAT+TGG | - | chr4.4:74392235-74392254 | None:intergenic | 35.0% | |
| ATTTACTTGCAACCAACATG+GGG | + | chr4.4:74392501-74392520 | MS.gene48844:CDS | 35.0% | |
| CAAACTTGACCTTAATCTTC+CGG | + | chr4.4:74392461-74392480 | MS.gene48844:CDS | 35.0% | |
| GATGAAGAAGCCATTAATGT+AGG | - | chr4.4:74392243-74392262 | None:intergenic | 35.0% | |
| GCAAGTCACAAAAAGGTTAA+GGG | + | chr4.4:74392087-74392106 | MS.gene48844:CDS | 35.0% | |
| TGGAAATCATTCCTTGAACA+CGG | + | chr4.4:74391619-74391638 | MS.gene48844:CDS | 35.0% | |
| ! | AGGTCAAGTTTGAGATCAAT+TGG | - | chr4.4:74392453-74392472 | None:intergenic | 35.0% |
| ! | ATGCACTTTGGATTTTCTCT+TGG | - | chr4.4:74392265-74392284 | None:intergenic | 35.0% |
| ! | TAATCCTTTTGCAACACCTT+TGG | - | chr4.4:74392007-74392026 | None:intergenic | 35.0% |
| ! | TACATACGTTTGTTACTTGG+GGG | - | chr4.4:74391526-74391545 | None:intergenic | 35.0% |
| ! | TGATGATGAAGATGATAGCA+AGG | + | chr4.4:74392668-74392687 | MS.gene48844:CDS | 35.0% |
| AAAATGCAACTCAGATGACG+CGG | + | chr4.4:74391642-74391661 | MS.gene48844:CDS | 40.0% | |
| AGATGATAGCAAGGTTAAGC+TGG | + | chr4.4:74392677-74392696 | MS.gene48844:CDS | 40.0% | |
| AGGCGATGAAACAAGTCAAA+TGG | + | chr4.4:74391459-74391478 | MS.gene48844:CDS | 40.0% | |
| ATTTGTGTATTTGTCGGAGC+CGG | - | chr4.4:74392483-74392502 | None:intergenic | 40.0% | |
| CCATAGAGCAAGTCACAAAA+AGG | + | chr4.4:74392080-74392099 | MS.gene48844:CDS | 40.0% | |
| CCTCAACAATACTATCCTCA+GGG | - | chr4.4:74392140-74392159 | None:intergenic | 40.0% | |
| TCCTCAACAATACTATCCTC+AGG | - | chr4.4:74392141-74392160 | None:intergenic | 40.0% | |
| TGCTATTGTTGATCCTCTTG+AGG | + | chr4.4:74391861-74391880 | MS.gene48844:CDS | 40.0% | |
| TGTCATAGGAGTTTCTCTTC+AGG | + | chr4.4:74392297-74392316 | MS.gene48844:CDS | 40.0% | |
| TTCTCTTCAGGACAAGCATT+AGG | + | chr4.4:74392309-74392328 | MS.gene48844:CDS | 40.0% | |
| TTCTTCATCTTTGCTAGCTG+AGG | - | chr4.4:74391908-74391927 | None:intergenic | 40.0% | |
| ! | ACATACGTTTGTTACTTGGG+GGG | - | chr4.4:74391525-74391544 | None:intergenic | 40.0% |
| ! | AGTTGCATTTTCCGTGTTCA+AGG | - | chr4.4:74391633-74391652 | None:intergenic | 40.0% |
| ! | TTAAGGGATGTTTTGCTGCA+AGG | + | chr4.4:74392103-74392122 | MS.gene48844:CDS | 40.0% |
| !!! | CCTTTTTGTGACTTGCTCTA+TGG | - | chr4.4:74392083-74392102 | None:intergenic | 40.0% |
| AAGGCTTGATCAAAACCCTG+AGG | + | chr4.4:74392122-74392141 | MS.gene48844:CDS | 45.0% | |
| AGGTCGATGCGAACTAAAGT+AGG | + | chr4.4:74391763-74391782 | MS.gene48844:CDS | 45.0% | |
| CCAATTCCAACTTGCAACCA+TGG | - | chr4.4:74392753-74392772 | None:intergenic | 45.0% | |
| CCCTGAGGATAGTATTGTTG+AGG | + | chr4.4:74392137-74392156 | MS.gene48844:CDS | 45.0% | |
| CCTAGCCAATGTTGATGTGT+CGG | - | chr4.4:74392373-74392392 | None:intergenic | 45.0% | |
| CTAGCCAATGTTGATGTGTC+GGG | - | chr4.4:74392372-74392391 | None:intergenic | 45.0% | |
| CTTGAATTTGCACCCCATGT+TGG | - | chr4.4:74392516-74392535 | None:intergenic | 45.0% | |
| GTGGTCACAAGAGATGTCAT+TGG | + | chr4.4:74392331-74392350 | MS.gene48844:CDS | 45.0% | |
| TCAAATGGACGACGATGATC+CGG | + | chr4.4:74391474-74391493 | MS.gene48844:CDS | 45.0% | |
| TCTTCACCATGGTTGCAAGT+TGG | + | chr4.4:74392744-74392763 | MS.gene48844:CDS | 45.0% | |
| TCTTCAGGACAAGCATTAGG+TGG | + | chr4.4:74392312-74392331 | MS.gene48844:CDS | 45.0% | |
| TGATCCTCTTGAGGTTGAAC+CGG | + | chr4.4:74391870-74391889 | MS.gene48844:CDS | 45.0% | |
| TTGGTGGAAGTTCTTCACCA+TGG | + | chr4.4:74392733-74392752 | MS.gene48844:CDS | 45.0% | |
| ! | CCATGGTTGCAAGTTGGAAT+TGG | + | chr4.4:74392750-74392769 | MS.gene48844:CDS | 45.0% |
| !! | AAGGCCAAAGGTGTTGCAAA+AGG | + | chr4.4:74392000-74392019 | MS.gene48844:CDS | 45.0% |
| GCTGAGGCACATGATTCTTC+CGG | - | chr4.4:74391892-74391911 | None:intergenic | 50.0% | |
| TCTTCCGGTTCAACCTCAAG+AGG | - | chr4.4:74391877-74391896 | None:intergenic | 50.0% | |
| TGCACCCGACACATCAACAT+TGG | + | chr4.4:74392365-74392384 | MS.gene48844:CDS | 50.0% | |
| TTGTCGGAGCCGGAAGATTA+AGG | - | chr4.4:74392473-74392492 | None:intergenic | 50.0% | |
| ! | CCGACACATCAACATTGGCT+AGG | + | chr4.4:74392370-74392389 | MS.gene48844:CDS | 50.0% |
| ! | GTGGCTGGTCGAAAAGGAAA+AGG | + | chr4.4:74391743-74391762 | MS.gene48844:CDS | 50.0% |
| ! | TGTAGGGTGTGTGAGCATTG+TGG | + | chr4.4:74391580-74391599 | MS.gene48844:CDS | 50.0% |
| ! | GAGGATGTGGCTGGTCGAAA+AGG | + | chr4.4:74391737-74391756 | MS.gene48844:CDS | 55.0% |
| ACCATCGTCTGCCATGGCGT+CGG | - | chr4.4:74391698-74391717 | None:intergenic | 60.0% | |
| ACGATGATCCGGCGAGCGAT+TGG | + | chr4.4:74391485-74391504 | MS.gene48844:CDS | 60.0% | |
| CGATGATCCGGCGAGCGATT+GGG | + | chr4.4:74391486-74391505 | MS.gene48844:CDS | 60.0% | |
| CTCTCCAGAATCCGACGCCA+TGG | + | chr4.4:74391684-74391703 | MS.gene48844:CDS | 60.0% | |
| GCCATCACCATCGTCTGCCA+TGG | - | chr4.4:74391704-74391723 | None:intergenic | 60.0% | |
| GCCATGGCAGACGATGGTGA+TGG | + | chr4.4:74391700-74391719 | MS.gene48844:CDS | 60.0% | |
| GTCAGTGGCAGGAGAGGATG+TGG | + | chr4.4:74391724-74391743 | MS.gene48844:CDS | 60.0% | |
| ! | CATGGCGTCGGATTCTGGAG+AGG | - | chr4.4:74391686-74391705 | None:intergenic | 60.0% |
| ! | TCTGCCATGGCGTCGGATTC+TGG | - | chr4.4:74391691-74391710 | None:intergenic | 60.0% |
| !! | ATGGTGATGGCGTCAGTGGC+AGG | + | chr4.4:74391713-74391732 | MS.gene48844:CDS | 60.0% |
| !! | GACGATGGTGATGGCGTCAG+TGG | + | chr4.4:74391709-74391728 | MS.gene48844:CDS | 60.0% |
| CCACCTTCCCAATCGCTCGC+CGG | - | chr4.4:74391496-74391515 | None:intergenic | 65.0% | |
| GATCCGGCGAGCGATTGGGA+AGG | + | chr4.4:74391490-74391509 | MS.gene48844:CDS | 65.0% | |
| GATGGCGTCAGTGGCAGGAG+AGG | + | chr4.4:74391718-74391737 | MS.gene48844:CDS | 65.0% | |
| GTGGCAGGAGAGGATGTGGC+TGG | + | chr4.4:74391728-74391747 | MS.gene48844:CDS | 65.0% | |
| TCCGACGCCATGGCAGACGA+TGG | + | chr4.4:74391694-74391713 | MS.gene48844:CDS | 65.0% | |
| CCGGCGAGCGATTGGGAAGG+TGG | + | chr4.4:74391493-74391512 | MS.gene48844:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 74391442 | 74392803 | 74391442 | ID=MS.gene48844 |
| chr4.4 | mRNA | 74391442 | 74392803 | 74391442 | ID=MS.gene48844.t1;Parent=MS.gene48844 |
| chr4.4 | exon | 74391442 | 74392803 | 74391442 | ID=MS.gene48844.t1.exon1;Parent=MS.gene48844.t1 |
| chr4.4 | CDS | 74391442 | 74392803 | 74391442 | ID=cds.MS.gene48844.t1;Parent=MS.gene48844.t1 |
| Gene Sequence |
| Protein sequence |
