AlfalfaGEDB | MS.gene49061

M. sativa cultivar XinJiangDaYe / MS.gene49061

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12799.10 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49061.t1	XP_013469701.1	98.8	498	6	0	684	1181	774	1271	2.60E-245	859

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49061.t1	Q9LYN8	67.4	402	124	2	779	1176	792	1190	1.6e-158	562.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49061.t1	A0A072VNY9	98.8	498	6	0	684	1181	774	1271	1.9e-245	859.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49061.t1	MTR_1g100787	97.523	1171	29	0	11	1181	101	1271	0.0	2291
MS.gene49061.t1	MTR_1g100787	34.622	621	331	9	250	800	100	715	1.86e-70	258
MS.gene49061.t1	MTR_1g047670	37.001	1027	597	15	159	1171	92	1082	0.0	573
MS.gene49061.t1	MTR_1g047670	37.014	643	385	6	30	665	84	713	1.85e-94	327
MS.gene49061.t1	MTR_1g047670	37.242	631	355	10	12	614	114	731	4.66e-87	306
MS.gene49061.t1	MTR_1g047670	34.975	609	357	5	101	682	82	678	1.38e-84	299
MS.gene49061.t1	MTR_1g047670	35.255	451	264	7	362	792	80	522	2.01e-56	214
MS.gene49061.t1	MTR_1g047670	35.821	402	241	4	406	793	77	475	2.40e-50	195
MS.gene49061.t1	MTR_1g047670	31.978	369	180	4	10	330	352	697	1.88e-38	157
MS.gene49061.t1	MTR_4g094790	35.465	1204	693	23	11	1175	90	1248	0.0	566

Showing 1 to 10 of 1,961 entries

Previous1 2 3 4 5…197Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49061.t1	AT5G07280	60.172	1165	407	4	16	1176	79	1190	0.0	1376
MS.gene49061.t1	AT5G07280	35.647	634	359	8	11	608	171	791	2.94e-89	314
MS.gene49061.t1	AT5G07280	35.246	488	302	4	11	497	338	812	1.66e-63	236
MS.gene49061.t1	AT5G07280	34.682	346	206	6	446	776	78	418	1.09e-35	148
MS.gene49061.t1	AT4G20140	35.046	1207	682	22	1	1171	91	1231	0.0	598
MS.gene49061.t1	AT4G20140	38.112	572	314	6	254	787	83	652	8.35e-86	305
MS.gene49061.t1	AT5G63930	37.512	1037	583	15	156	1171	82	1074	0.0	585
MS.gene49061.t1	AT5G63930	37.898	628	374	5	30	654	77	691	6.33e-99	340
MS.gene49061.t1	AT5G63930	37.282	574	346	5	11	582	130	691	3.61e-82	292
MS.gene49061.t1	AT5G63930	34.590	451	253	5	357	805	69	479	3.59e-56	213

Showing 1 to 10 of 1,604 entries

Previous1 2 3 4 5…161Next

Find 282 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCCGGTATATCTC+CGG	0.550761	1.3:+69751867	None:intergenic
AAAAGTCTTAATAGGAAGCA+TGG	0.529597	1.3:+69751336	None:intergenic
AAACAACCCACCAAGCTCAC+TGG	0.512962	1.3:+69751999	None:intergenic
AAACGTTACAAAATAGCGAC+GGG	0.587120	1.3:-69749051	MS.gene49061:CDS
AAATACGAAGATACCTTGGA+AGG	0.626784	1.3:+69750563	None:intergenic
AAATCTTTGTGGCCAGATGT+TGG	0.470678	1.3:-69749676	MS.gene49061:CDS
AAATGATCCTGAGGACCTGG+AGG	0.673510	1.3:-69749517	MS.gene49061:CDS
AAATTCTTGAAGGGGATGAA+AGG	0.530805	1.3:-69748538	MS.gene49061:CDS
AACAAGCTTTCAGGCCATGT+TGG	0.487671	1.3:-69750044	MS.gene49061:CDS
AACAATTCCCAAGCTCAGGT+GGG	0.647048	1.3:+69751209	None:intergenic

Showing 1 to 10 of 282 entries

Previous1 2 3 4 5…29Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTCTTAATAGGAAGCA+TGG	+	chr1.3:69749382-69749401	None:intergenic	30.0%
AAGACAAACATAATTGGAGA+TGG	-	chr1.3:69751373-69751392	MS.gene49061:CDS	30.0%
AAGTTGTTAGATTTGTCAAG+CGG	+	chr1.3:69750349-69750368	None:intergenic	30.0%
ACACTCCAAGGTTTATATTT+GGG	-	chr1.3:69750428-69750447	MS.gene49061:CDS	30.0%
ACCAAAGTTAATTTCAGAAG+AGG	+	chr1.3:69751322-69751341	None:intergenic	30.0%
CAAATACCAGTTATTGGAAT+AGG	+	chr1.3:69750983-69751002	None:intergenic	30.0%
CTTGACAAATCTAACAACTT+TGG	-	chr1.3:69750349-69750368	MS.gene49061:CDS	30.0%
CTTTCTCATAATAGATTGTC+TGG	-	chr1.3:69750230-69750249	MS.gene49061:CDS	30.0%
GATAAATTCCACAAACTAGA+AGG	+	chr1.3:69749795-69749814	None:intergenic	30.0%
GTTTCCCAAAAATCTAACTT+CGG	+	chr1.3:69751017-69751036	None:intergenic	30.0%

Showing 1 to 10 of 337 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	69748531	69752206	69748531	ID=MS.gene49061
chr1.3	mRNA	69748531	69752206	69748531	ID=MS.gene49061.t1;Parent=MS.gene49061
chr1.3	exon	69752176	69752206	69752176	ID=MS.gene49061.t1.exon1;Parent=MS.gene49061.t1
chr1.3	CDS	69752176	69752206	69752176	ID=cds.MS.gene49061.t1;Parent=MS.gene49061.t1
chr1.3	exon	69748531	69752045	69748531	ID=MS.gene49061.t1.exon2;Parent=MS.gene49061.t1
chr1.3	CDS	69748531	69752045	69748531	ID=cds.MS.gene49061.t1;Parent=MS.gene49061.t1

Gene Sequence

>MS.gene49061

ATGGCACAATACAACTTCGCACTGCAACTGGGTTGGTGTAACGTGTCAACTCGGTCGAGTTACCTCACTCTCTCTTCCTTCTTGTTCCCTCAGAAGCAATCTTTCTCTTTCTCTTTCCACTCTTTCCTCTCTCACCTCTCTCACCACCCTCAACCTTGAAGATAATCAGTTTTCCGGTGAACTCTCCAGTGAGCTTGGTGGGTTGTTTCAGCTAGAAACACTAAGCCTCGGTTCAAACTCTTTCGCCGGGAAAATTCCAACGGAGTTTGGTTTTTTAACAAAACTACGTACACTTGATCTTTCCGGTAATGCACTCGCCGGAGATATACCGGAGAGTTTTGGAAACTTGACAAAGCTTCAGTTTTTAGACCTTAGCAATAACATGCTTTCAGGTTCTCTTCCGTTAAGTCTTTTTACCGGAACGGTGAATTTGATTTCTATTGATATTTCAAACAACTCGTTTTCCGGCGAAATTCCACCGGAGATTGGAAATTGGAAGAATTTGACCGCACTTTACGTTGGGATAAACAAGTTGTCTGGTACATTGCCTAAGGAAATTGGAGAGCTTTCAAAGCTTGAAGTTTTGTATTCACCTTCTTGTTTGATTGAAGGTCCATTACCTGTAGAAATGGAAAACCTTGAATTGTTGACAAAACTTGATCTTTCTTATAACCCTTTAAGGTGTTCTATTCCAAAGTTTATTGGGAAGTTGAAAAATTTGGAAATTTTGAACCTTGTTTTTTCCGAGCTTAATGGGTCAGTTCCATCTGAGCTTGGAAATTGTTCAAATTTGACTAATGTCGTGCTTTCTTTTAATTCATTATCTGGGTCATTGCCTCAAGAGCTTTCCATGCTTCCTATTAAGACTTTTTCAGCTGAAAAGAATCTTCTTCACGGTCCTTTGCCTTCTTGGCTTGGGAAGTGGAGTAATATTGATTCTCTTTTGCTTTCGGCGAACCGGTTTACGGGTGTGATCCCACCTGAGCTTGGGAATTGTTCTGTGATGGAGCATCTCAGTTTGAGTAGTAATTTGTTGACAGGTTCTATACCTGAGGAGCTTTGTAACGCTGCGTCGTTGTCGGAGATTGATCTAGATGATAACAACCTTAGTGGTACAATTGAGAAAGCTTTTGTGAATTGTAAAAACCTTACTCAGTTGGTTTTGATGAATAATCAAATTGTTGGTTCTATACCACAGTACCTTTCTGAGCTTCCTTTGATGGTGCTGGATTTGGACAACAACAATTTCAGTGGACAGATACCTTCTAGTTTGTGGAATTTATCAACACTGATGGAATTTTCTGCTGCTAATAACCATTTGGAGGGTTCTCTTCCTGTGGAGATAGGAAATGCAGTTATTCTACAGAGGCTTGTTCTTAGCAACAATCATTTGACAGGTAACATTCCTAAGGAAATTGGAAGTCTTTCAAGTCTTTCAGTTTTTAATTTGAATGGAAATATGCTTGAAGGAAACATTCCAGTTGAGCTTGGTGATTGCATTTCACTCACTACATTGGACCTTGGAAACAATCAACTCAATGGGTCTATTCCTGAAAAATTGGTGGAACTTAGTGAATTGCAGTGTCTTGTTCTCTCTCACAATAATTTGTCTGGGAGTATTCCTTCCAAGGTATCTTCGTATTTTCGACAACTTACTGTCCCTGATTTGAGCTTTGTTCAACACCTTGGTATGTTTGATCTTTCTCATAATAGATTGTCTGGCACCATACCTGATGAATTGGGGAGCTGTGTAGTGGTTGTGGATCTATTGCTTAGCAACAACATGCTTTCAGGGAGCATTCCAAGATCACTCTCCCGCTTGACAAATCTAACAACTTTGGATTTGTCTGGAAACTTGTTGTCAGGTTCCATTCCACCGGAGCTTGGAGATGCTGTCACACTCCAAGGTTTATATTTGGGACAGAATCAACTCTCAGGTACCATCCCCGGGAATTTTGGAAAGTTGACTGCTTTGGTGAAGCTGAATTTAACAGGAAACATGCTGTATGGTCCTATTCCAACTAGTTTTGGGAACATGAAGGAATTGACTCACTTGGACTTGAGCTATAATGAACTCAGTGGTGAGCTTCCGTCCATTATGTCGGGTGTGCAAAGCCTTGTTGGGCTTTACGTGCAGAATAACAAGCTTTCAGGCCATGTTGGGGAGCTTTTCTCAAACTCCATGACATGGAGGATTGAGACGATGAATCTAAGTTGCAATTGCTTTGATGGAAACTTGCCATGGTCTTTAGGAAATCTTTCCTACTTGACGATTTTGGATCTTCACCGAAATCTGTTGACTGGAGAAATTCCTTTAGACCTTGGCAATCTAATGCAACTGGAATATTTTGATGTTTCAGGCAATCAATTATCTGGAAAGATTCCAGAGAAGTTATGCAGTCTAGTTAATTTGAATTACCTTGATTTTTCTCAAAACAGATTGGAAGGGCCTATTCCAATAACTGGTATTTGCCAAAACCTATCCGAAGTTAGATTTTTGGGAAACAGAAATCTTTGTGGCCAGATGTTGGGTACGAACTGTGAGGTCAAAAGCATTGGTAGATATTCATTGTTTAATGTATGGAGGCTTGGTGGAATTGCCATAGCAGTCATATTAGTAACCTTGATCTGTGCTTTTGCGCTGCATAGATGGATGAGCAGGAAGCAAAATGATCCTGAGGACCTGGAGGATCGGAAACTTAACAGTTATGTTGATCAGAATCTTTACTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCGATGTTTGAGCAGCCTCTTCTGAAATTAACTTTGGTTGATATCCTTAAAGCTACCGAGAATTTCAGCAAGACAAACATAATTGGAGATGGAGGTTTCGGAACTGTGTACAAGGCCACTTTACCAAATGGAAGAACAGTTGCTGTGAAGAAGCTTAGCGAAGCTAAAACGCAGGGTCATCGAGAGTTCATGGCTGAAATGGAAACCTTAGGCAAGGTAAAGCATCAAAACCTAGTTGCATTGCTTGGTTATTGCTCAATGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGATCTTTGGTTGAGAAACAGAACTGGGGGACTCGAAATCCTGAATTGGAACAAACGTTACAAAATAGCGACGGGCGCAGCAAAAGGACTAGCTTTCCTTCATCACGGATTCATACCTCACATCATTCACAGGGATGTTAAAGCTAGCAACATTTTACTAAATGAAGATTTTGAGCCGAAAGTCGCCGATTTTGGACTAGCAAGATTGATCAGTGCATGTGAGACTCATATCAGCACTGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACGAGAGGCGATGTCTACAGTTTCGGGGTCATTTTACTTGAATTGGTGACCGGAAAAGAGCCGACAGGACCAGATTTCAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGTCAAGCTGCTGATGTTCTTGATCCAACAGTTCTCGACGCGGACTCTAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTCTGTCTCTCTGATAATCCTGCTAACAGGCCTACCATGTTTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGAGATTAG

Protein sequence

>MS.gene49061.t1

MAQYNFALQLDNQFSGELSSELGGLFQLETLSLGSNSFAGKIPTEFGFLTKLRTLDLSGNALAGDIPESFGNLTKLQFLDLSNNMLSGSLPLSLFTGTVNLISIDISNNSFSGEIPPEIGNWKNLTALYVGINKLSGTLPKEIGELSKLEVLYSPSCLIEGPLPVEMENLELLTKLDLSYNPLRCSIPKFIGKLKNLEILNLVFSELNGSVPSELGNCSNLTNVVLSFNSLSGSLPQELSMLPIKTFSAEKNLLHGPLPSWLGKWSNIDSLLLSANRFTGVIPPELGNCSVMEHLSLSSNLLTGSIPEELCNAASLSEIDLDDNNLSGTIEKAFVNCKNLTQLVLMNNQIVGSIPQYLSELPLMVLDLDNNNFSGQIPSSLWNLSTLMEFSAANNHLEGSLPVEIGNAVILQRLVLSNNHLTGNIPKEIGSLSSLSVFNLNGNMLEGNIPVELGDCISLTTLDLGNNQLNGSIPEKLVELSELQCLVLSHNNLSGSIPSKVSSYFRQLTVPDLSFVQHLGMFDLSHNRLSGTIPDELGSCVVVVDLLLSNNMLSGSIPRSLSRLTNLTTLDLSGNLLSGSIPPELGDAVTLQGLYLGQNQLSGTIPGNFGKLTALVKLNLTGNMLYGPIPTSFGNMKELTHLDLSYNELSGELPSIMSGVQSLVGLYVQNNKLSGHVGELFSNSMTWRIETMNLSCNCFDGNLPWSLGNLSYLTILDLHRNLLTGEIPLDLGNLMQLEYFDVSGNQLSGKIPEKLCSLVNLNYLDFSQNRLEGPIPITGICQNLSEVRFLGNRNLCGQMLGTNCEVKSIGRYSLFNVWRLGGIAIAVILVTLICAFALHRWMSRKQNDPEDLEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILKATENFSKTNIIGDGGFGTVYKATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILNWNKRYKIATGAAKGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHISTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGD