AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49062

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49062.t1 MTR_1g100777 91.776 304 24 1 1 304 1 303 0.0 540
MS.gene49062.t1 MTR_0020s0020 54.971 342 109 9 1 301 1 338 3.90e-104 308
MS.gene49062.t1 MTR_5g010680 54.065 246 85 6 5 223 6 250 2.14e-75 235
MS.gene49062.t1 MTR_3g101870 44.907 216 89 4 10 196 16 230 2.12e-56 186
MS.gene49062.t1 MTR_5g089170 48.128 187 89 1 10 196 17 195 5.46e-56 182
MS.gene49062.t1 MTR_5g017470 48.634 183 70 3 11 178 2 175 1.35e-51 171
MS.gene49062.t1 MTR_7g091370 38.224 259 112 4 12 270 16 226 5.26e-48 160
MS.gene49062.t1 MTR_5g029680 65.957 94 32 0 16 109 30 123 2.89e-41 149
MS.gene49062.t1 MTR_7g095680 60.638 94 37 0 16 109 47 140 4.79e-40 143
MS.gene49062.t1 MTR_4g088900 39.024 205 97 6 4 199 17 202 4.28e-39 137
MS.gene49062.t1 MTR_1g071360 61.702 94 36 0 16 109 30 123 1.53e-38 139
MS.gene49062.t1 MTR_1g071360 61.702 94 36 0 16 109 27 120 2.73e-38 139
MS.gene49062.t1 MTR_6g043060 57.143 105 42 1 17 118 21 125 7.43e-38 137
MS.gene49062.t1 MTR_1g102860 61.702 94 36 0 16 109 38 131 3.52e-37 135
MS.gene49062.t1 MTR_4g077970 40.223 179 86 2 18 196 12 169 1.19e-36 137
MS.gene49062.t1 MTR_8g087540 55.000 100 45 0 14 113 8 107 2.06e-36 134
MS.gene49062.t1 MTR_1g061170 42.105 171 70 2 12 182 43 184 4.03e-36 135
MS.gene49062.t1 MTR_2g100680 58.163 98 41 0 16 113 29 126 1.85e-35 133
MS.gene49062.t1 MTR_6g086805 56.311 103 45 0 9 111 2 104 4.74e-35 130
MS.gene49062.t1 MTR_3g104550 51.402 107 52 0 16 122 44 150 1.08e-34 129
MS.gene49062.t1 MTR_8g083100 56.842 95 41 0 19 113 23 117 2.89e-34 130
MS.gene49062.t1 MTR_2g100670 53.061 98 46 0 16 113 31 128 7.18e-33 123
MS.gene49062.t1 MTR_2g017890 48.062 129 61 3 6 133 4 127 9.01e-33 124
MS.gene49062.t1 MTR_2g100670 54.167 96 44 0 16 111 139 234 5.40e-32 123
MS.gene49062.t1 MTR_8g105780 55.914 93 40 1 18 109 22 114 2.07e-29 115
MS.gene49062.t1 MTR_4g045757 63.793 58 21 0 18 75 14 71 6.32e-21 85.1
MS.gene49062.t1 MTR_5g047190 38.462 91 49 2 26 109 1 91 4.60e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49062.t1 AT5G62020 46.886 273 120 5 11 267 16 279 1.42e-74 231
MS.gene49062.t1 AT4G11660 47.183 284 101 5 10 252 51 326 1.09e-68 218
MS.gene49062.t1 AT1G46264 47.549 204 87 3 13 196 29 232 5.76e-58 190
MS.gene49062.t1 AT4G36990 48.500 200 85 2 11 201 7 197 6.18e-54 177
MS.gene49062.t1 AT2G41690 46.111 180 97 0 16 195 38 217 6.18e-45 153
MS.gene49062.t1 AT4G17750 65.000 100 35 0 14 113 48 147 2.14e-41 150
MS.gene49062.t1 AT3G22830 64.583 96 34 0 14 109 57 152 6.68e-40 144
MS.gene49062.t1 AT1G32330 60.748 107 37 1 16 122 35 136 1.96e-39 144
MS.gene49062.t1 AT1G32330 60.748 107 37 1 16 122 35 136 2.06e-39 144
MS.gene49062.t1 AT3G02990 62.500 96 36 0 14 109 19 114 5.35e-38 140
MS.gene49062.t1 AT5G16820 64.130 92 33 0 18 109 27 118 6.72e-37 137
MS.gene49062.t1 AT5G16820 64.130 92 33 0 18 109 27 118 6.72e-37 137
MS.gene49062.t1 AT3G63350 54.630 108 48 1 1 108 12 118 1.02e-36 132
MS.gene49062.t1 AT5G43840 56.311 103 45 0 16 118 17 119 4.05e-36 131
MS.gene49062.t1 AT2G26150 57.447 94 40 0 16 109 42 135 1.19e-35 131
MS.gene49062.t1 AT2G26150 57.447 94 40 0 16 109 42 135 1.19e-35 131
MS.gene49062.t1 AT5G03720 43.030 165 65 2 18 182 55 190 1.56e-35 132
MS.gene49062.t1 AT5G03720 43.030 165 65 2 18 182 55 190 1.56e-35 132
MS.gene49062.t1 AT3G51910 50.943 106 52 0 16 121 27 132 2.72e-35 129
MS.gene49062.t1 AT5G54070 58.696 92 38 0 17 108 70 161 2.43e-34 127
MS.gene49062.t1 AT4G13980 50.000 112 53 1 19 127 24 135 1.68e-33 128
MS.gene49062.t1 AT3G24520 58.696 92 38 0 18 109 17 108 1.13e-32 123
MS.gene49062.t1 AT1G67970 43.182 132 74 1 18 148 19 150 1.23e-31 121
MS.gene49062.t1 AT5G45710 49.593 123 60 1 6 128 3 123 2.42e-31 120
MS.gene49062.t1 AT5G45710 49.593 123 60 1 6 128 3 123 2.42e-31 120
MS.gene49062.t1 AT4G18880 55.660 106 46 1 8 113 6 110 4.29e-31 120
MS.gene49062.t1 AT4G18870 41.304 92 51 1 14 102 139 230 3.30e-19 86.3
MS.gene49062.t1 AT4G18870 37.755 98 56 3 10 105 5 99 1.32e-16 79.0
MS.gene49062.t1 AT1G77570 37.500 88 50 3 19 102 27 113 6.13e-11 60.1

Find 80 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGCGTCGCCGTCAATTTC+AGG 0.165701 1.3:+69716175 MS.gene49062:CDS
TTGTTGTGCTTAAAATATTT+AGG 0.304096 1.3:-69715872 None:intergenic
TCGCTATACCAGACAGCTTC+GGG 0.338014 1.3:-69716486 None:intergenic
CTGGAACAACGTTCATCGTT+TGG 0.377410 1.3:+69715819 MS.gene49062:CDS
CCACATGAACAGAATGATTC+AGG 0.388437 1.3:-69716567 None:intergenic
AATCAGAGCCGTTTGATTCA+AGG 0.418470 1.3:+69716596 MS.gene49062:CDS
ATCGCTATACCAGACAGCTT+CGG 0.422296 1.3:-69716487 None:intergenic
GTGATTTCGTGGAATGATAC+TGG 0.437195 1.3:+69715800 MS.gene49062:CDS
CGAGAATGAGAGGTTGAGAA+AGG 0.441779 1.3:+69716258 MS.gene49062:CDS
TCGTCGTTGCACCGCTTCTC+CGG 0.449006 1.3:-69716439 None:intergenic
GTCAATTTCAGGGGAGGAGC+AGG 0.455410 1.3:+69716186 MS.gene49062:CDS
CCGGCATTGGAAGCTGCCGC+CGG 0.458057 1.3:-69716115 None:intergenic
TGTTACAGTCGTGCCGGCAT+TGG 0.462484 1.3:-69716128 None:intergenic
TCACCCTTCCTTGAATCAAA+CGG 0.468104 1.3:-69716604 None:intergenic
TTAGAGAATTCCCACCGATC+AGG 0.468408 1.3:-69716022 None:intergenic
GATAGAAACCCGAAGCTGTC+TGG 0.470299 1.3:+69716478 MS.gene49062:CDS
TCGCGTCGCCGTCAATTTCA+GGG 0.475190 1.3:+69716176 MS.gene49062:CDS
ATCAACAAGGTGATATGTCT+TGG 0.476007 1.3:-69715759 None:intergenic
CCACCAACGATGTGATTTCG+TGG 0.481252 1.3:+69715789 MS.gene49062:CDS
AAGCAAATCCCTAGCGAAAA+CGG 0.486758 1.3:-69715849 None:intergenic
ATGTTGCTCAACGGCGTCGC+CGG 0.492568 1.3:+69716396 MS.gene49062:CDS
CCGGCGGCAGCTTCCAATGC+CGG 0.495670 1.3:+69716115 MS.gene49062:CDS
GCAGTTAACAAAGGAAATAG+AGG 0.498390 1.3:+69716288 MS.gene49062:CDS
CCACGAAATCACATCGTTGG+TGG 0.498992 1.3:-69715789 None:intergenic
TTCCTCCAGCATGGCTCCGT+CGG 0.499279 1.3:+69715688 None:intergenic
GAATTACATAAGTATTGAGT+TGG 0.503981 1.3:-69715913 None:intergenic
GCGAAGGGAGCGAGAGGAGA+AGG 0.505444 1.3:+69716514 MS.gene49062:CDS
TGCTCCTCCCCTGAAATTGA+CGG 0.505469 1.3:-69716184 None:intergenic
TTCCTCGCCGTCAATTTCTC+CGG 0.506147 1.3:+69716222 MS.gene49062:CDS
GCAGACGCTTCGTTTGTTAC+CGG 0.526094 1.3:+69716420 MS.gene49062:CDS
TGAATCTTTCCGACGAGGCG+AGG 0.528771 1.3:+69716045 MS.gene49062:CDS
CAACGACGAAGATGCGGCGG+TGG 0.528814 1.3:+69716453 MS.gene49062:CDS
ATTCAAGGAAGGGTGAAAAG+AGG 0.529327 1.3:+69716611 MS.gene49062:CDS
TGATATGTCTTGGTGAGAAA+CGG 0.529943 1.3:-69715749 None:intergenic
AGGAGAAGGACGGTGTATTG+AGG 0.542287 1.3:+69716528 MS.gene49062:CDS
TGGTATAGCGATTGATGCGA+AGG 0.552919 1.3:+69716498 MS.gene49062:CDS
GAAAATCGTTTCAGCATCGC+CGG 0.555017 1.3:+69716096 MS.gene49062:CDS
GAATTACGCAAATTCTCAAA+CGG 0.560736 1.3:+69716351 MS.gene49062:CDS
AAAAGTTGTACCTGATCGGT+GGG 0.563579 1.3:+69716012 MS.gene49062:CDS
GAAATTGACGGCGACGCGAT+AGG 0.563683 1.3:-69716172 None:intergenic
CTCGCCGTCAATTTCTCCGG+CGG 0.565722 1.3:+69716225 MS.gene49062:CDS
CGCTACTAGACGAGAATGAG+AGG 0.567007 1.3:+69716248 MS.gene49062:CDS
AAATCCCTAGCGAAAACGGT+AGG 0.568543 1.3:-69715845 None:intergenic
TTCTCAAACGGAAGGCGGTG+CGG 0.570972 1.3:+69716363 MS.gene49062:CDS
CAAACGGAAGGCGGTGCGGA+AGG 0.571648 1.3:+69716367 MS.gene49062:CDS
GAGCCGTTTGATTCAAGGAA+GGG 0.572438 1.3:+69716601 MS.gene49062:CDS
TTCTCGTCTAGTAGCGCCGC+CGG 0.574568 1.3:-69716241 None:intergenic
AGCGCCGCCGGAGAAATTGA+CGG 0.574646 1.3:-69716229 None:intergenic
AACAAACGAAGCGTCTGCAC+CGG 0.577210 1.3:-69716415 None:intergenic
TTCGTTTGTTACCGGAGAAG+CGG 0.579066 1.3:+69716428 MS.gene49062:CDS
GCTCCGTCGGTTGAACATAA+CGG 0.590379 1.3:+69715701 MS.gene49062:CDS
GGTGAGAAACGGCGTCGGAG+TGG 0.597255 1.3:-69715738 None:intergenic
CTTTCCGACGAGGCGAGGAA+CGG 0.598393 1.3:+69716050 MS.gene49062:CDS
AGAGCCGTTTGATTCAAGGA+AGG 0.601442 1.3:+69716600 MS.gene49062:CDS
ATTGATGCGAAGGGAGCGAG+AGG 0.606253 1.3:+69716508 MS.gene49062:CDS
AATCCCTAGCGAAAACGGTA+GGG 0.608706 1.3:-69715844 None:intergenic
TACGCAAATTCTCAAACGGA+AGG 0.609476 1.3:+69716355 MS.gene49062:CDS
ATTCCACGAAATCACATCGT+TGG 0.610773 1.3:-69715792 None:intergenic
CGCCGGAGAAATTGACGGCG+AGG 0.610959 1.3:-69716224 None:intergenic
GTCGCCGTCAATTTCAGGGG+AGG 0.611650 1.3:+69716180 MS.gene49062:CDS
GCAAATTCTCAAACGGAAGG+CGG 0.615095 1.3:+69716358 MS.gene49062:CDS
GCGGTGCAACGACGAAGATG+CGG 0.623614 1.3:+69716447 MS.gene49062:CDS
TTCTCTGTGATATTCAGCGA+CGG 0.625241 1.3:+69716074 MS.gene49062:CDS
CGCGTCGCCGTCAATTTCAG+GGG 0.626408 1.3:+69716177 MS.gene49062:CDS
GACGCGATAGGCTTTGCTGT+CGG 0.627107 1.3:-69716160 None:intergenic
GAAGCCGTTCCTCGCCTCGT+CGG 0.628152 1.3:-69716054 None:intergenic
GGAGAACATGCAGTTAACAA+AGG 0.636251 1.3:+69716279 MS.gene49062:CDS
CCTGAATCATTCTGTTCATG+TGG 0.637037 1.3:+69716567 MS.gene49062:CDS
TGGTGGCGATTTCATCAACA+AGG 0.649485 1.3:-69715772 None:intergenic
AGGGAGCGAGAGGAGAAGGA+CGG 0.652383 1.3:+69716518 MS.gene49062:CDS
GTGAAAAGAGGAAAATGTTG+CGG 0.654247 1.3:+69716623 MS.gene49062:CDS
GGTATAGCGATTGATGCGAA+GGG 0.658310 1.3:+69716499 MS.gene49062:CDS
AGGAAAAGAATGTTGCTCAA+CGG 0.662127 1.3:+69716387 MS.gene49062:CDS
AATCGTTTCAGCATCGCCGG+CGG 0.666535 1.3:+69716099 MS.gene49062:CDS
GTCTTGGTGAGAAACGGCGT+CGG 0.667306 1.3:-69715743 None:intergenic
ACGGTGTATTGAGGATGATG+TGG 0.668550 1.3:+69716537 MS.gene49062:CDS
TCGCCGTTATGTTCAACCGA+CGG 0.672808 1.3:-69715704 None:intergenic
GTGCAACGACGAAGATGCGG+CGG 0.686538 1.3:+69716450 MS.gene49062:CDS
TCTAATGAATCTTTCCGACG+AGG 0.711943 1.3:+69716040 MS.gene49062:CDS
CGGCACGACTGTAACAAAAG+CGG 0.729434 1.3:+69716135 MS.gene49062:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTGTGTTAATTT+TGG + chr1.3:69715971-69715990 MS.gene49062:intron 10.0%
!! TTGTTGTGCTTAAAATATTT+AGG - chr1.3:69715875-69715894 None:intergenic 20.0%
!!! GTTAATTTTGGTTATTTTCA+GGG + chr1.3:69715983-69716002 MS.gene49062:intron 20.0%
!!! TGTTAATTTTGGTTATTTTC+AGG + chr1.3:69715982-69716001 MS.gene49062:intron 20.0%
! TTAAAAAAGTTGTACCTGAT+CGG + chr1.3:69716008-69716027 MS.gene49062:CDS 25.0%
!!! GAATTACATAAGTATTGAGT+TGG - chr1.3:69715916-69715935 None:intergenic 25.0%
GAATTACGCAAATTCTCAAA+CGG + chr1.3:69716351-69716370 MS.gene49062:CDS 30.0%
AGGAAAAGAATGTTGCTCAA+CGG + chr1.3:69716387-69716406 MS.gene49062:CDS 35.0%
ATCAACAAGGTGATATGTCT+TGG - chr1.3:69715762-69715781 None:intergenic 35.0%
GCAGTTAACAAAGGAAATAG+AGG + chr1.3:69716288-69716307 MS.gene49062:CDS 35.0%
GTGAAAAGAGGAAAATGTTG+CGG + chr1.3:69716623-69716642 MS.gene49062:CDS 35.0%
TGATATGTCTTGGTGAGAAA+CGG - chr1.3:69715752-69715771 None:intergenic 35.0%
AAAAAGTTGTACCTGATCGG+TGG + chr1.3:69716011-69716030 MS.gene49062:CDS 40.0%
AAAAGTTGTACCTGATCGGT+GGG + chr1.3:69716012-69716031 MS.gene49062:CDS 40.0%
AAGCAAATCCCTAGCGAAAA+CGG - chr1.3:69715852-69715871 None:intergenic 40.0%
AATCAGAGCCGTTTGATTCA+AGG + chr1.3:69716596-69716615 MS.gene49062:CDS 40.0%
ATTCAAGGAAGGGTGAAAAG+AGG + chr1.3:69716611-69716630 MS.gene49062:CDS 40.0%
ATTCCACGAAATCACATCGT+TGG - chr1.3:69715795-69715814 None:intergenic 40.0%
CCACATGAACAGAATGATTC+AGG - chr1.3:69716570-69716589 None:intergenic 40.0%
CCTGAATCATTCTGTTCATG+TGG + chr1.3:69716567-69716586 MS.gene49062:CDS 40.0%
GGAGAACATGCAGTTAACAA+AGG + chr1.3:69716279-69716298 MS.gene49062:CDS 40.0%
GTGATTTCGTGGAATGATAC+TGG + chr1.3:69715800-69715819 MS.gene49062:CDS 40.0%
TACGCAAATTCTCAAACGGA+AGG + chr1.3:69716355-69716374 MS.gene49062:CDS 40.0%
TCACCCTTCCTTGAATCAAA+CGG - chr1.3:69716607-69716626 None:intergenic 40.0%
TCTAATGAATCTTTCCGACG+AGG + chr1.3:69716040-69716059 MS.gene49062:CDS 40.0%
TTCTCTGTGATATTCAGCGA+CGG + chr1.3:69716074-69716093 MS.gene49062:CDS 40.0%
AAATCCCTAGCGAAAACGGT+AGG - chr1.3:69715848-69715867 None:intergenic 45.0%
AATCCCTAGCGAAAACGGTA+GGG - chr1.3:69715847-69715866 None:intergenic 45.0%
ACGGTGTATTGAGGATGATG+TGG + chr1.3:69716537-69716556 MS.gene49062:CDS 45.0%
AGAGCCGTTTGATTCAAGGA+AGG + chr1.3:69716600-69716619 MS.gene49062:CDS 45.0%
ATCGCTATACCAGACAGCTT+CGG - chr1.3:69716490-69716509 None:intergenic 45.0%
CGAGAATGAGAGGTTGAGAA+AGG + chr1.3:69716258-69716277 MS.gene49062:CDS 45.0%
CTGGAACAACGTTCATCGTT+TGG + chr1.3:69715819-69715838 MS.gene49062:CDS 45.0%
GAAAATCGTTTCAGCATCGC+CGG + chr1.3:69716096-69716115 MS.gene49062:CDS 45.0%
GAGCCGTTTGATTCAAGGAA+GGG + chr1.3:69716601-69716620 MS.gene49062:CDS 45.0%
GCAAATTCTCAAACGGAAGG+CGG + chr1.3:69716358-69716377 MS.gene49062:CDS 45.0%
GGTATAGCGATTGATGCGAA+GGG + chr1.3:69716499-69716518 MS.gene49062:CDS 45.0%
TGGTATAGCGATTGATGCGA+AGG + chr1.3:69716498-69716517 MS.gene49062:CDS 45.0%
TTAGAGAATTCCCACCGATC+AGG - chr1.3:69716025-69716044 None:intergenic 45.0%
! TGGTGGCGATTTCATCAACA+AGG - chr1.3:69715775-69715794 None:intergenic 45.0%
! TTCGTTTGTTACCGGAGAAG+CGG + chr1.3:69716428-69716447 MS.gene49062:CDS 45.0%
AGGAGAAGGACGGTGTATTG+AGG + chr1.3:69716528-69716547 MS.gene49062:CDS 50.0%
CCACCAACGATGTGATTTCG+TGG + chr1.3:69715789-69715808 MS.gene49062:CDS 50.0%
CCACGAAATCACATCGTTGG+TGG - chr1.3:69715792-69715811 None:intergenic 50.0%
CGCTACTAGACGAGAATGAG+AGG + chr1.3:69716248-69716267 MS.gene49062:CDS 50.0%
CGGCACGACTGTAACAAAAG+CGG + chr1.3:69716135-69716154 MS.gene49062:CDS 50.0%
GATAGAAACCCGAAGCTGTC+TGG + chr1.3:69716478-69716497 MS.gene49062:CDS 50.0%
TCGCCGTTATGTTCAACCGA+CGG - chr1.3:69715707-69715726 None:intergenic 50.0%
TCGCTATACCAGACAGCTTC+GGG - chr1.3:69716489-69716508 None:intergenic 50.0%
TGCTCCTCCCCTGAAATTGA+CGG - chr1.3:69716187-69716206 None:intergenic 50.0%
TTCCTCGCCGTCAATTTCTC+CGG + chr1.3:69716222-69716241 MS.gene49062:CDS 50.0%
! AACAAACGAAGCGTCTGCAC+CGG - chr1.3:69716418-69716437 None:intergenic 50.0%
! CGCTTTTGTTACAGTCGTGC+CGG - chr1.3:69716137-69716156 None:intergenic 50.0%
! GAACCCTACCGTTTTCGCTA+GGG + chr1.3:69715841-69715860 MS.gene49062:CDS 50.0%
! GCAGACGCTTCGTTTGTTAC+CGG + chr1.3:69716420-69716439 MS.gene49062:CDS 50.0%
! GCTCCGTCGGTTGAACATAA+CGG + chr1.3:69715701-69715720 MS.gene49062:CDS 50.0%
AATCGTTTCAGCATCGCCGG+CGG + chr1.3:69716099-69716118 MS.gene49062:CDS 55.0%
ATCGCGTCGCCGTCAATTTC+AGG + chr1.3:69716175-69716194 MS.gene49062:CDS 55.0%
ATTGATGCGAAGGGAGCGAG+AGG + chr1.3:69716508-69716527 MS.gene49062:CDS 55.0%
GAAATTGACGGCGACGCGAT+AGG - chr1.3:69716175-69716194 None:intergenic 55.0%
GTCAATTTCAGGGGAGGAGC+AGG + chr1.3:69716186-69716205 MS.gene49062:CDS 55.0%
GTCTTGGTGAGAAACGGCGT+CGG - chr1.3:69715746-69715765 None:intergenic 55.0%
TCGCGTCGCCGTCAATTTCA+GGG + chr1.3:69716176-69716195 MS.gene49062:CDS 55.0%
TGAATCTTTCCGACGAGGCG+AGG + chr1.3:69716045-69716064 MS.gene49062:CDS 55.0%
TTCTCAAACGGAAGGCGGTG+CGG + chr1.3:69716363-69716382 MS.gene49062:CDS 55.0%
! GACGCGATAGGCTTTGCTGT+CGG - chr1.3:69716163-69716182 None:intergenic 55.0%
! GGAACCCTACCGTTTTCGCT+AGG + chr1.3:69715840-69715859 MS.gene49062:CDS 55.0%
! TGTTACAGTCGTGCCGGCAT+TGG - chr1.3:69716131-69716150 None:intergenic 55.0%
AGCGCCGCCGGAGAAATTGA+CGG - chr1.3:69716232-69716251 None:intergenic 60.0%
AGGGAGCGAGAGGAGAAGGA+CGG + chr1.3:69716518-69716537 MS.gene49062:CDS 60.0%
ATGTTGCTCAACGGCGTCGC+CGG + chr1.3:69716396-69716415 MS.gene49062:CDS 60.0%
CGCGTCGCCGTCAATTTCAG+GGG + chr1.3:69716177-69716196 MS.gene49062:CDS 60.0%
CTCGCCGTCAATTTCTCCGG+CGG + chr1.3:69716225-69716244 MS.gene49062:CDS 60.0%
CTTTCCGACGAGGCGAGGAA+CGG + chr1.3:69716050-69716069 MS.gene49062:CDS 60.0%
GCGGTGCAACGACGAAGATG+CGG + chr1.3:69716447-69716466 MS.gene49062:CDS 60.0%
GTCGCCGTCAATTTCAGGGG+AGG + chr1.3:69716180-69716199 MS.gene49062:CDS 60.0%
GTGCAACGACGAAGATGCGG+CGG + chr1.3:69716450-69716469 MS.gene49062:CDS 60.0%
TCGTCGTTGCACCGCTTCTC+CGG - chr1.3:69716442-69716461 None:intergenic 60.0%
TTCTCGTCTAGTAGCGCCGC+CGG - chr1.3:69716244-69716263 None:intergenic 60.0%
CAAACGGAAGGCGGTGCGGA+AGG + chr1.3:69716367-69716386 MS.gene49062:CDS 65.0%
CAACGACGAAGATGCGGCGG+TGG + chr1.3:69716453-69716472 MS.gene49062:CDS 65.0%
CGCCGGAGAAATTGACGGCG+AGG - chr1.3:69716227-69716246 None:intergenic 65.0%
GAAGCCGTTCCTCGCCTCGT+CGG - chr1.3:69716057-69716076 None:intergenic 65.0%
GCGAAGGGAGCGAGAGGAGA+AGG + chr1.3:69716514-69716533 MS.gene49062:CDS 65.0%
! GGTGAGAAACGGCGTCGGAG+TGG - chr1.3:69715741-69715760 None:intergenic 65.0%
CCGGCGGCAGCTTCCAATGC+CGG + chr1.3:69716115-69716134 MS.gene49062:CDS 70.0%
! CCGGCATTGGAAGCTGCCGC+CGG - chr1.3:69716118-69716137 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 69715698 69716687 69715698 ID=MS.gene49062
chr1.3 mRNA 69715698 69716687 69715698 ID=MS.gene49062.t1;Parent=MS.gene49062
chr1.3 exon 69715698 69715928 69715698 ID=MS.gene49062.t1.exon1;Parent=MS.gene49062.t1
chr1.3 CDS 69715698 69715928 69715698 ID=cds.MS.gene49062.t1;Parent=MS.gene49062.t1
chr1.3 exon 69716004 69716687 69716004 ID=MS.gene49062.t1.exon2;Parent=MS.gene49062.t1
chr1.3 CDS 69716004 69716687 69716004 ID=cds.MS.gene49062.t1;Parent=MS.gene49062.t1
Gene Sequence

>MS.gene49062

ATGGCTCCGTCGGTTGAACATAACGGCGAGTCTCAAAGATCCACTCCGACGCCGTTTCTCACCAAGACATATCACCTTGTTGATGAAATCGCCACCAACGATGTGATTTCGTGGAATGATACTGGAACAACGTTCATCGTTTGGAACCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTATGTAATTCACTCATCATCATCGAAGCTATTTGATTTTTTTTATTTTTTTATTTGTGTTAATTTTGGTTATTTTCAGGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAATGAATCTTTCCGACGAGGCGAGGAACGGCTTCTCTGTGATATTCAGCGACGGAAAATCGTTTCAGCATCGCCGGCGGCAGCTTCCAATGCCGGCACGACTGTAACAAAAGCGGTTCCGACAGCAAAGCCTATCGCGTCGCCGTCAATTTCAGGGGAGGAGCAGGTGATTTCTTCGAATTCCTCGCCGTCAATTTCTCCGGCGGCGCTACTAGACGAGAATGAGAGGTTGAGAAAGGAGAACATGCAGTTAACAAAGGAAATAGAGGACATGAAATCGCTTTACAACAATATATTCAATCTTCTGTCGAATTACGCAAATTCTCAAACGGAAGGCGGTGCGGAAGGAAAAGAATGTTGCTCAACGGCGTCGCCGGTGCAGACGCTTCGTTTGTTACCGGAGAAGCGGTGCAACGACGAAGATGCGGCGGTGGAAGATAGAAACCCGAAGCTGTCTGGTATAGCGATTGATGCGAAGGGAGCGAGAGGAGAAGGACGGTGTATTGAGGATGATGTGGTGTTGAGCCTGAATCATTCTGTTCATGTGGACGTGAAATCAGAGCCGTTTGATTCAAGGAAGGGTGAAAAGAGGAAAATGTTGCGGCTAAATCAGTGCTATAGAGCGAATCAGAGTGCGTGTAATTGA
Protein sequence

>MS.gene49062.t1

MAPSVEHNGESQRSTPTPFLTKTYHLVDEIATNDVISWNDTGTTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNESFRRGEERLLCDIQRRKIVSASPAAASNAGTTVTKAVPTAKPIASPSISGEEQVISSNSSPSISPAALLDENERLRKENMQLTKEIEDMKSLYNNIFNLLSNYANSQTEGGAEGKECCSTASPVQTLRLLPEKRCNDEDAAVEDRNPKLSGIAIDAKGARGEGRCIEDDVVLSLNHSVHVDVKSEPFDSRKGEKRKMLRLNQCYRANQSACN