AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49077

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49077.t1 MTR_1g100667 97.059 272 6 1 1 270 1 272 0.0 553
MS.gene49077.t1 MTR_6g055910 60.544 294 81 5 1 270 1 283 5.95e-118 339
MS.gene49077.t1 MTR_6g055910 56.972 251 74 4 43 270 15 254 5.97e-90 267
MS.gene49077.t1 MTR_6g055910 52.915 223 71 4 71 270 2 213 1.67e-68 211
MS.gene49077.t1 MTR_1g085040 71.074 121 34 1 10 129 9 129 7.82e-56 184
MS.gene49077.t1 MTR_1g112760 69.748 119 35 1 10 127 10 128 4.11e-54 175
MS.gene49077.t1 MTR_7g110830 57.516 153 64 1 10 161 9 161 5.15e-54 179
MS.gene49077.t1 MTR_3g077110 69.421 121 36 1 10 129 9 129 5.98e-54 178
MS.gene49077.t1 MTR_4g105130 60.993 141 51 2 10 146 9 149 1.14e-53 178
MS.gene49077.t1 MTR_1g085640 69.748 119 35 1 10 127 9 127 3.28e-53 177
MS.gene49077.t1 MTR_4g065017 56.291 151 49 1 9 159 13 146 1.48e-52 174
MS.gene49077.t1 MTR_7g111290 64.493 138 43 2 10 146 9 141 1.76e-52 175
MS.gene49077.t1 MTR_8g098860 66.667 108 36 0 12 119 11 118 1.20e-51 171
MS.gene49077.t1 MTR_2g099740 70.370 108 32 0 10 117 9 116 3.00e-51 172
MS.gene49077.t1 MTR_8g017440 69.725 109 33 0 10 118 9 117 3.65e-51 171
MS.gene49077.t1 MTR_2g064160 50.888 169 78 3 9 172 7 175 3.78e-51 170
MS.gene49077.t1 MTR_2g097910 71.154 104 30 0 14 117 21 124 3.80e-51 170
MS.gene49077.t1 MTR_8g017540 69.444 108 33 0 10 117 55 162 2.06e-50 170
MS.gene49077.t1 MTR_8g017500 67.593 108 35 0 10 117 9 116 8.84e-50 167
MS.gene49077.t1 MTR_3g028740 70.370 108 32 0 10 117 19 126 1.15e-49 167
MS.gene49077.t1 MTR_1g100653 64.815 108 38 0 14 121 13 120 2.37e-49 165
MS.gene49077.t1 MTR_6g012690 68.868 106 33 0 14 119 13 118 3.55e-49 166
MS.gene49077.t1 MTR_3g097450 48.428 159 77 3 1 155 1 158 8.21e-49 163
MS.gene49077.t1 MTR_5g010020 68.317 101 32 0 12 112 11 111 8.81e-49 164
MS.gene49077.t1 MTR_7g011170 63.866 119 42 1 1 119 1 118 4.76e-48 162
MS.gene49077.t1 MTR_7g115650 61.017 118 46 0 14 131 13 130 5.22e-48 159
MS.gene49077.t1 MTR_2g011660 60.504 119 47 0 1 119 1 119 1.08e-47 162
MS.gene49077.t1 MTR_3g074520 66.038 106 36 0 14 119 13 118 1.20e-47 162
MS.gene49077.t1 MTR_8g095390 59.829 117 46 1 15 130 14 130 1.39e-47 160
MS.gene49077.t1 MTR_4g073420 37.308 260 144 7 1 246 1 255 4.32e-47 159
MS.gene49077.t1 MTR_4g082230 56.835 139 58 2 1 138 1 138 4.60e-47 162
MS.gene49077.t1 MTR_4g478180 52.778 144 61 2 14 156 14 151 5.65e-47 160
MS.gene49077.t1 MTR_4g082290 60.317 126 49 1 14 138 13 138 5.74e-47 161
MS.gene49077.t1 MTR_4g091490 59.664 119 48 0 1 119 1 119 1.52e-46 159
MS.gene49077.t1 MTR_8g017390 61.983 121 45 1 10 129 9 129 3.11e-46 161
MS.gene49077.t1 MTR_5g029840 60.870 115 44 1 14 127 13 127 4.65e-46 157
MS.gene49077.t1 MTR_1g043080 39.189 222 117 5 14 219 13 232 7.17e-46 154
MS.gene49077.t1 MTR_1g076150 65.385 104 36 0 14 117 13 116 1.32e-45 154
MS.gene49077.t1 MTR_5g079670 54.331 127 52 2 15 136 13 138 2.42e-45 152
MS.gene49077.t1 MTR_5g007370 63.208 106 39 0 14 119 13 118 3.36e-45 154
MS.gene49077.t1 MTR_8g017340 64.545 110 38 1 9 117 8 117 7.42e-45 158
MS.gene49077.t1 MTR_5g078140 52.482 141 65 2 1 140 1 140 8.83e-45 154
MS.gene49077.t1 MTR_8g017350 64.545 110 38 1 9 117 8 117 2.90e-44 158
MS.gene49077.t1 MTR_2g089620 59.167 120 48 1 1 120 1 119 5.15e-44 152
MS.gene49077.t1 MTR_2g089450 61.321 106 41 0 14 119 13 118 7.26e-44 149
MS.gene49077.t1 MTR_4g485530 56.897 116 50 0 4 119 3 118 9.94e-44 147
MS.gene49077.t1 MTR_3g065440 54.887 133 58 2 1 132 1 132 1.61e-43 150
MS.gene49077.t1 MTR_4g121460 46.552 174 90 2 1 172 1 173 2.71e-43 150
MS.gene49077.t1 MTR_0251s0050 57.265 117 50 0 1 117 1 117 3.04e-43 148
MS.gene49077.t1 MTR_0063s0090 64.356 101 36 0 14 114 13 113 4.92e-43 146
MS.gene49077.t1 MTR_1g043050 58.407 113 47 0 14 126 13 125 5.00e-43 147
MS.gene49077.t1 MTR_7g010210 40.175 229 98 7 14 205 13 239 6.66e-43 149
MS.gene49077.t1 MTR_3g461490 50.365 137 67 1 14 149 13 149 3.49e-42 147
MS.gene49077.t1 MTR_7g010210 58.879 107 44 0 14 120 13 119 3.73e-42 145
MS.gene49077.t1 MTR_8g031360 52.713 129 59 2 1 127 1 129 6.16e-42 145
MS.gene49077.t1 MTR_7g096930 57.265 117 49 1 1 117 1 116 7.44e-42 145
MS.gene49077.t1 MTR_4g102380 56.303 119 51 1 1 119 1 118 7.50e-42 145
MS.gene49077.t1 MTR_0008s0390 55.556 117 52 0 1 117 1 117 7.74e-42 145
MS.gene49077.t1 MTR_7g035075 43.558 163 85 2 11 168 12 172 8.67e-42 142
MS.gene49077.t1 MTR_0008s0470 60.577 104 41 0 14 117 14 117 1.34e-41 144
MS.gene49077.t1 MTR_6g009430 53.488 129 56 3 1 127 1 127 1.44e-41 145
MS.gene49077.t1 MTR_2g034790 50.980 153 67 4 1 147 1 151 3.56e-41 144
MS.gene49077.t1 MTR_1g017000 44.231 156 78 4 1 155 1 148 3.66e-41 142
MS.gene49077.t1 MTR_2g067420 62.136 103 39 0 10 112 11 113 5.48e-41 144
MS.gene49077.t1 MTR_7g076740 56.780 118 49 2 1 117 1 117 6.00e-41 143
MS.gene49077.t1 MTR_2g089420 46.012 163 76 2 14 168 12 170 7.65e-41 146
MS.gene49077.t1 MTR_1g073170 57.391 115 47 1 2 116 11 123 8.73e-41 141
MS.gene49077.t1 MTR_1g045610 61.538 104 40 0 14 117 22 125 9.86e-41 141
MS.gene49077.t1 MTR_7g102110 49.664 149 69 4 1 145 1 147 2.09e-40 141
MS.gene49077.t1 MTR_3g083540 53.846 117 53 1 14 129 42 158 2.26e-40 142
MS.gene49077.t1 MTR_0008s0280 61.765 102 39 0 14 115 13 114 2.45e-40 139
MS.gene49077.t1 MTR_3g039990 53.782 119 55 0 1 119 1 119 3.91e-40 141
MS.gene49077.t1 MTR_1g017140 37.004 227 133 6 1 225 1 219 4.80e-40 142
MS.gene49077.t1 MTR_4g125520 55.556 117 51 1 1 117 1 116 6.66e-40 140
MS.gene49077.t1 MTR_7g087130 43.976 166 86 1 14 172 13 178 9.42e-40 141
MS.gene49077.t1 MTR_1g110460 56.250 112 48 1 14 125 27 137 9.62e-40 140
MS.gene49077.t1 MTR_6g006030 52.033 123 58 1 11 133 12 133 1.91e-39 137
MS.gene49077.t1 MTR_4g100720 45.283 159 81 2 9 161 9 167 2.10e-39 135
MS.gene49077.t1 MTR_8g020490 59.048 105 43 0 15 119 10 114 2.49e-39 137
MS.gene49077.t1 MTR_0140s0030 57.547 106 45 0 14 119 14 119 2.51e-39 140
MS.gene49077.t1 MTR_0489s0020 57.547 106 45 0 14 119 14 119 2.51e-39 140
MS.gene49077.t1 MTR_1g086510 55.556 117 52 0 14 130 22 138 2.55e-39 138
MS.gene49077.t1 MTR_8g027345 53.782 119 54 1 1 119 1 118 2.90e-39 139
MS.gene49077.t1 MTR_4g057635 55.906 127 51 4 1 125 1 124 3.14e-39 139
MS.gene49077.t1 MTR_2g095520 53.285 137 62 2 1 136 1 136 3.99e-39 139
MS.gene49077.t1 MTR_5g014990 43.750 160 72 3 1 143 1 159 4.46e-39 138
MS.gene49077.t1 MTR_5g042030 54.783 115 51 1 14 127 8 122 7.11e-39 137
MS.gene49077.t1 MTR_6g012180 59.596 99 40 0 14 112 13 111 7.43e-39 138
MS.gene49077.t1 MTR_7g117730 50.806 124 60 1 1 124 1 123 1.04e-38 136
MS.gene49077.t1 MTR_6g090405 46.622 148 76 3 1 146 1 147 2.16e-38 135
MS.gene49077.t1 MTR_0197s0010 41.935 155 86 1 18 168 6 160 4.49e-38 134
MS.gene49077.t1 MTR_3g103570 54.237 118 52 2 1 117 1 117 5.23e-38 137
MS.gene49077.t1 MTR_1g086530 53.043 115 53 1 14 128 34 147 5.71e-38 135
MS.gene49077.t1 MTR_1g062940 57.692 104 44 0 14 117 7 110 2.36e-37 131
MS.gene49077.t1 MTR_8g042410 39.512 205 103 5 14 210 38 229 1.17e-36 136
MS.gene49077.t1 MTR_3g052450 44.966 149 74 1 14 162 41 181 1.34e-36 136
MS.gene49077.t1 MTR_5g078800 55.357 112 49 1 6 117 1 111 1.53e-36 130
MS.gene49077.t1 MTR_0247s0040 57.426 101 43 0 14 114 8 108 1.64e-36 128
MS.gene49077.t1 MTR_0193s0090 50.435 115 57 0 14 128 8 122 4.77e-36 128
MS.gene49077.t1 MTR_4g097570 55.856 111 47 2 1 110 1 110 6.73e-36 130
MS.gene49077.t1 MTR_4g063100 52.830 106 50 0 14 119 8 113 7.95e-36 129
MS.gene49077.t1 MTR_3g052430 52.679 112 53 0 14 125 42 153 8.91e-36 134
MS.gene49077.t1 MTR_5g078910 53.097 113 52 1 6 118 1 112 1.21e-35 129
MS.gene49077.t1 MTR_5g079290 54.286 105 48 0 14 118 18 122 1.37e-35 128
MS.gene49077.t1 MTR_5g079220 52.632 114 53 1 6 118 13 126 1.50e-35 128
MS.gene49077.t1 MTR_3g011610 51.818 110 53 0 14 123 38 147 2.83e-35 132
MS.gene49077.t1 MTR_7g017260 51.261 119 56 1 14 130 26 144 5.35e-35 127
MS.gene49077.t1 MTR_5g078860 55.769 104 46 0 14 117 8 111 6.79e-35 127
MS.gene49077.t1 MTR_2g033170 52.101 119 57 0 14 132 25 143 7.59e-35 128
MS.gene49077.t1 MTR_2g096380 52.885 104 49 0 14 117 7 110 1.46e-34 125
MS.gene49077.t1 MTR_7g109320 56.410 117 50 1 1 117 1 116 1.68e-34 127
MS.gene49077.t1 MTR_4g097570 55.357 112 47 3 1 110 1 111 2.41e-34 125
MS.gene49077.t1 MTR_0001s0360 55.238 105 47 0 14 118 8 112 2.93e-34 124
MS.gene49077.t1 MTR_4g128670 52.679 112 51 2 1 111 1 111 3.15e-34 127
MS.gene49077.t1 MTR_8g060940 56.000 100 44 0 14 113 8 107 3.45e-34 124
MS.gene49077.t1 MTR_4g123040 52.542 118 54 2 14 130 25 141 6.86e-34 125
MS.gene49077.t1 MTR_5g079120 50.962 104 51 0 14 117 62 165 8.22e-34 124
MS.gene49077.t1 MTR_1g021230 54.369 103 47 0 14 116 58 160 1.82e-33 126
MS.gene49077.t1 MTR_5g078950 53.465 101 47 0 14 114 8 108 6.23e-33 121
MS.gene49077.t1 MTR_5g078930 52.727 110 51 1 14 122 10 119 7.19e-33 120
MS.gene49077.t1 MTR_2g088170 53.636 110 51 0 14 123 30 139 7.31e-33 125
MS.gene49077.t1 MTR_8g006470 52.294 109 50 2 14 121 11 118 2.06e-32 120
MS.gene49077.t1 MTR_1g083630 49.107 112 57 0 12 123 11 122 6.10e-31 121
MS.gene49077.t1 MTR_7g111290 58.252 103 37 2 45 146 2 99 1.64e-30 117
MS.gene49077.t1 MTR_5g062790 36.207 174 91 4 14 185 10 165 4.84e-30 114
MS.gene49077.t1 MTR_3g045430 44.444 117 64 1 14 129 14 130 4.98e-30 114
MS.gene49077.t1 MTR_4g029540 52.427 103 48 1 14 115 11 113 6.08e-30 114
MS.gene49077.t1 MTR_5g088610 51.456 103 49 1 14 115 10 112 6.92e-30 115
MS.gene49077.t1 MTR_4g063100 61.333 75 29 0 45 119 10 84 4.85e-29 110
MS.gene49077.t1 MTR_5g088080 48.544 103 52 1 14 115 13 115 1.16e-28 110
MS.gene49077.t1 MTR_5g088150 48.544 103 52 1 14 115 13 115 1.16e-28 110
MS.gene49077.t1 MTR_5g488210 48.544 103 52 1 14 115 13 115 1.16e-28 110
MS.gene49077.t1 MTR_5g016510 48.598 107 54 1 15 121 5 110 1.22e-28 111
MS.gene49077.t1 MTR_5g088640 48.544 103 52 1 14 115 13 115 1.62e-28 110
MS.gene49077.t1 MTR_5g488170 48.544 103 52 1 14 115 13 115 3.25e-28 108
MS.gene49077.t1 MTR_2g096380 61.644 73 28 0 45 117 19 91 3.87e-28 107
MS.gene49077.t1 MTR_5g007300 63.158 76 28 0 14 89 65 140 1.63e-27 103
MS.gene49077.t1 MTR_4g019370 46.018 113 60 1 15 127 38 149 1.70e-27 108
MS.gene49077.t1 MTR_3g101290 50.000 106 48 2 15 118 37 139 3.08e-27 105
MS.gene49077.t1 MTR_6g027340 48.624 109 51 3 9 116 12 116 4.63e-27 104
MS.gene49077.t1 MTR_6g015455 40.260 154 90 2 15 167 5 157 5.65e-27 110
MS.gene49077.t1 MTR_6g074860 46.078 102 52 2 15 115 4 103 2.28e-26 103
MS.gene49077.t1 MTR_3g089045 34.973 183 108 4 15 189 16 195 2.80e-26 104
MS.gene49077.t1 MTR_6g027360 48.113 106 52 2 12 116 75 178 2.96e-26 104
MS.gene49077.t1 MTR_4g094982 47.115 104 54 1 15 118 5 107 7.65e-26 102
MS.gene49077.t1 MTR_5g049190 43.810 105 58 1 15 119 19 122 1.43e-24 99.0
MS.gene49077.t1 MTR_4g082040 44.118 102 56 1 15 116 105 205 2.59e-24 101
MS.gene49077.t1 MTR_5g041570 36.301 146 78 3 12 143 131 275 4.28e-24 100
MS.gene49077.t1 MTR_7g061330 44.860 107 58 1 11 117 109 214 1.48e-23 100
MS.gene49077.t1 MTR_7g061330 32.231 121 71 3 9 119 46 165 1.52e-11 64.7
MS.gene49077.t1 MTR_7g461410 44.860 107 58 1 11 117 109 214 1.48e-23 100
MS.gene49077.t1 MTR_7g461410 32.231 121 71 3 9 119 46 165 1.52e-11 64.7
MS.gene49077.t1 MTR_7g061330 44.860 107 58 1 11 117 73 178 2.42e-23 99.4
MS.gene49077.t1 MTR_7g061330 33.628 113 72 3 9 119 18 129 4.27e-11 63.2
MS.gene49077.t1 MTR_4g128190 40.000 135 61 4 14 142 12 132 2.44e-23 95.5
MS.gene49077.t1 MTR_3g463400 40.952 105 61 1 15 119 133 236 9.42e-23 97.1
MS.gene49077.t1 MTR_6g027370 40.351 114 67 1 15 128 99 211 1.27e-22 95.9
MS.gene49077.t1 MTR_1g085880 49.541 109 53 2 9 115 7 115 1.96e-22 92.0
MS.gene49077.t1 MTR_5g070020 35.246 122 78 1 15 136 122 242 4.51e-22 94.4
MS.gene49077.t1 MTR_7g086960 46.602 103 52 2 15 116 89 189 4.89e-22 94.4
MS.gene49077.t1 MTR_1g085770 49.541 109 53 2 9 115 7 115 1.07e-21 92.4
MS.gene49077.t1 MTR_3g110028 37.500 120 74 1 11 130 81 199 1.24e-21 94.7
MS.gene49077.t1 MTR_3g110028 38.596 114 66 3 9 119 25 137 2.52e-16 79.0
MS.gene49077.t1 MTR_4g105660 40.000 105 62 1 15 119 180 283 1.27e-21 94.0
MS.gene49077.t1 MTR_1g026870 37.705 122 75 1 11 132 81 201 3.83e-21 93.2
MS.gene49077.t1 MTR_1g026870 35.965 114 69 3 9 119 25 137 4.66e-15 75.5
MS.gene49077.t1 MTR_1g057980 41.509 106 61 1 6 111 71 175 4.22e-21 90.5
MS.gene49077.t1 MTR_7g037260 32.680 153 81 3 15 151 145 291 5.36e-21 91.3
MS.gene49077.t1 MTR_3g077650 39.286 112 67 1 8 119 174 284 9.35e-21 91.3
MS.gene49077.t1 MTR_5g082910 44.444 99 54 1 15 113 19 116 2.69e-20 88.2
MS.gene49077.t1 MTR_7g451170 35.965 114 72 1 6 119 182 294 1.20e-19 88.2
MS.gene49077.t1 MTR_7g035350 42.268 97 55 1 15 111 225 320 1.52e-19 87.8
MS.gene49077.t1 MTR_7g061550 38.000 100 60 1 18 115 10 109 8.35e-19 85.1
MS.gene49077.t1 MTR_5g010650 43.011 93 52 1 18 110 113 204 2.58e-18 84.3
MS.gene49077.t1 MTR_0023s0210 48.684 76 39 0 14 89 8 83 2.67e-18 77.8
MS.gene49077.t1 MTR_4g088015 36.697 109 68 1 11 119 217 324 6.69e-18 83.2
MS.gene49077.t1 MTR_8g468380 32.000 125 84 1 18 142 25 148 6.15e-17 80.5
MS.gene49077.t1 MTR_5g038910 34.109 129 82 3 7 134 17 143 3.30e-16 78.2
MS.gene49077.t1 MTR_5g038910 34.109 129 82 3 7 134 17 143 4.27e-16 77.8
MS.gene49077.t1 MTR_7g450950 35.052 97 62 1 15 111 157 252 6.05e-16 77.0
MS.gene49077.t1 MTR_7g037130 36.792 106 64 2 15 120 145 247 6.88e-16 77.0
MS.gene49077.t1 MTR_8g017480 68.182 44 14 0 10 53 9 52 2.45e-13 63.5
MS.gene49077.t1 MTR_4g063100 53.061 49 23 0 71 119 1 49 1.88e-12 64.7
MS.gene49077.t1 MTR_2g096380 55.814 43 19 0 75 117 5 47 9.57e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49077.t1 AT4G25560 52.153 209 79 3 6 193 1 209 1.23e-62 199
MS.gene49077.t1 AT5G52260 57.447 188 64 4 7 178 6 193 3.73e-62 197
MS.gene49077.t1 AT3G48920 53.886 193 80 4 8 196 13 200 6.26e-62 196
MS.gene49077.t1 AT5G26660 70.588 119 34 1 10 127 9 127 1.24e-54 180
MS.gene49077.t1 AT1G57560 50.262 191 78 4 10 195 9 187 1.92e-54 178
MS.gene49077.t1 AT1G57560 59.060 149 56 2 10 157 9 153 4.96e-54 176
MS.gene49077.t1 AT4G01680 64.341 129 45 1 10 137 9 137 6.64e-54 175
MS.gene49077.t1 AT4G01680 64.341 129 45 1 10 137 9 137 4.55e-53 176
MS.gene49077.t1 AT1G09540 64.341 129 45 1 10 137 9 137 2.42e-52 174
MS.gene49077.t1 AT1G63910 67.593 108 35 0 12 119 11 118 8.99e-52 173
MS.gene49077.t1 AT3G13890 70.370 108 32 0 10 117 9 116 1.65e-51 172
MS.gene49077.t1 AT5G12870 69.444 108 33 0 12 119 17 124 2.40e-50 167
MS.gene49077.t1 AT3G08500 70.370 108 32 0 10 117 27 134 4.50e-50 168
MS.gene49077.t1 AT3G12720 62.069 116 43 1 12 126 21 136 4.83e-50 167
MS.gene49077.t1 AT3G01140 56.291 151 63 3 1 149 1 150 6.59e-50 167
MS.gene49077.t1 AT4G01680 58.865 141 45 2 10 137 9 149 1.43e-49 167
MS.gene49077.t1 AT3G01140 58.696 138 55 2 14 149 56 193 1.45e-49 168
MS.gene49077.t1 AT5G65230 69.811 106 32 0 14 119 13 118 1.77e-49 166
MS.gene49077.t1 AT5G15310 68.868 106 33 0 14 119 13 118 1.15e-48 164
MS.gene49077.t1 AT4G05100 61.345 119 46 0 1 119 1 119 1.37e-48 164
MS.gene49077.t1 AT4G34990 51.948 154 66 3 1 153 1 147 1.63e-48 162
MS.gene49077.t1 AT5G15310 68.868 106 33 0 14 119 13 118 1.67e-48 161
MS.gene49077.t1 AT5G15310 68.868 106 33 0 14 119 13 118 1.72e-48 163
MS.gene49077.t1 AT3G13890 64.957 117 32 1 10 117 9 125 2.42e-48 164
MS.gene49077.t1 AT4G38620 53.957 139 62 2 1 138 1 138 3.78e-48 161
MS.gene49077.t1 AT3G02940 64.151 106 38 0 14 119 13 118 6.34e-48 161
MS.gene49077.t1 AT3G02940 64.151 106 38 0 14 119 13 118 1.27e-47 161
MS.gene49077.t1 AT3G02940 64.151 106 38 0 14 119 13 118 1.27e-47 161
MS.gene49077.t1 AT1G79180 65.766 111 38 0 10 120 11 121 2.85e-47 159
MS.gene49077.t1 AT5G10280 59.664 119 47 1 1 119 1 118 2.89e-47 160
MS.gene49077.t1 AT5G54230 66.038 106 36 0 14 119 13 118 3.71e-47 160
MS.gene49077.t1 AT1G18570 52.206 136 64 1 5 139 5 140 3.74e-47 160
MS.gene49077.t1 AT1G22640 52.857 140 64 2 1 139 1 139 3.92e-47 158
MS.gene49077.t1 AT4G09460 52.555 137 63 2 1 136 1 136 1.08e-46 156
MS.gene49077.t1 AT1G34670 52.288 153 61 3 14 165 13 154 1.83e-46 159
MS.gene49077.t1 AT4G21440 63.208 106 39 0 14 119 13 118 7.56e-46 157
MS.gene49077.t1 AT1G74430 65.094 106 37 0 14 119 13 118 7.78e-46 155
MS.gene49077.t1 AT2G16720 54.015 137 61 2 1 136 1 136 8.85e-46 155
MS.gene49077.t1 AT3G23250 61.538 104 40 0 14 117 13 116 1.88e-45 154
MS.gene49077.t1 AT5G16770 63.462 104 38 0 14 117 13 116 2.02e-45 155
MS.gene49077.t1 AT5G16770 63.462 104 38 0 14 117 13 116 2.02e-45 155
MS.gene49077.t1 AT2G31180 59.504 121 48 1 1 121 1 120 2.14e-45 153
MS.gene49077.t1 AT1G06180 54.074 135 61 1 1 135 1 134 2.91e-45 153
MS.gene49077.t1 AT3G12820 63.636 110 40 0 10 119 11 120 2.97e-45 152
MS.gene49077.t1 AT5G16600 46.243 173 91 2 1 172 1 172 2.99e-45 155
MS.gene49077.t1 AT5G16770 63.462 104 38 0 14 117 13 116 3.19e-45 155
MS.gene49077.t1 AT5G16770 63.462 104 38 0 14 117 13 116 3.19e-45 155
MS.gene49077.t1 AT4G17785 59.829 117 47 0 1 117 1 117 6.66e-45 155
MS.gene49077.t1 AT4G17785 59.829 117 47 0 1 117 1 117 8.19e-45 155
MS.gene49077.t1 AT4G22680 48.734 158 79 2 1 157 1 157 1.24e-44 152
MS.gene49077.t1 AT4G12350 49.664 149 71 3 1 147 1 147 1.27e-44 152
MS.gene49077.t1 AT5G60890 59.130 115 46 1 14 127 13 127 1.40e-44 152
MS.gene49077.t1 AT4G28110 60.748 107 42 0 14 120 13 119 1.56e-44 152
MS.gene49077.t1 AT5G07690 57.851 121 50 1 14 133 13 133 1.82e-44 153
MS.gene49077.t1 AT5G61420 57.031 128 52 2 14 140 13 138 2.03e-44 154
MS.gene49077.t1 AT5G07700 49.367 158 74 4 14 169 13 166 6.41e-44 152
MS.gene49077.t1 AT5G07700 49.367 158 74 4 14 169 13 166 6.41e-44 152
MS.gene49077.t1 AT1G16490 63.303 109 40 0 10 118 11 119 7.41e-44 150
MS.gene49077.t1 AT3G30210 48.066 181 72 3 14 194 28 186 4.14e-43 148
MS.gene49077.t1 AT5G35550 62.264 106 40 0 15 120 16 121 7.22e-43 147
MS.gene49077.t1 AT1G56160 63.303 109 40 0 10 118 11 119 7.24e-43 148
MS.gene49077.t1 AT1G66230 51.449 138 65 2 1 137 1 137 7.32e-43 147
MS.gene49077.t1 AT1G74080 48.299 147 74 2 14 158 13 159 1.31e-42 148
MS.gene49077.t1 AT5G23000 58.824 119 45 3 1 117 1 117 3.88e-42 147
MS.gene49077.t1 AT1G35515 50.365 137 66 2 1 136 1 136 4.08e-42 144
MS.gene49077.t1 AT5G56110 50.365 137 67 1 14 149 13 149 5.14e-42 146
MS.gene49077.t1 AT3G01530 50.758 132 64 1 14 144 26 157 6.85e-42 143
MS.gene49077.t1 AT5G14340 50.725 138 66 2 1 137 13 149 1.46e-41 144
MS.gene49077.t1 AT3G27920 52.679 112 53 0 7 118 8 119 2.10e-41 142
MS.gene49077.t1 AT5G40350 49.254 134 63 1 14 142 18 151 2.51e-41 142
MS.gene49077.t1 AT1G08810 53.125 128 60 0 14 141 13 140 2.92e-41 143
MS.gene49077.t1 AT5G49330 58.120 117 48 1 1 117 1 116 2.96e-41 145
MS.gene49077.t1 AT3G61250 59.615 104 42 0 14 117 13 116 3.14e-41 144
MS.gene49077.t1 AT5G62470 58.716 109 45 0 14 122 13 121 3.34e-41 145
MS.gene49077.t1 AT5G14750 54.206 107 49 0 12 118 15 121 6.61e-41 140
MS.gene49077.t1 AT3G47600 59.434 106 43 0 14 119 13 118 6.91e-41 144
MS.gene49077.t1 AT1G18710 58.491 106 44 0 14 119 13 118 8.23e-41 142
MS.gene49077.t1 AT3G13540 52.033 123 58 1 9 130 19 141 9.79e-41 141
MS.gene49077.t1 AT3G27810 47.857 140 72 1 14 152 21 160 1.41e-40 140
MS.gene49077.t1 AT1G79180 50.694 144 38 1 10 120 11 154 1.45e-40 143
MS.gene49077.t1 AT5G52600 54.545 110 50 0 7 116 6 115 2.13e-40 139
MS.gene49077.t1 AT2G47460 49.315 146 73 1 1 146 1 145 2.39e-40 143
MS.gene49077.t1 AT5G40330 53.271 107 50 0 12 118 11 117 3.87e-40 139
MS.gene49077.t1 AT3G24310 61.538 104 40 0 14 117 19 122 8.58e-40 139
MS.gene49077.t1 AT1G48000 57.627 118 48 2 14 130 33 149 1.15e-39 138
MS.gene49077.t1 AT1G74650 55.085 118 52 1 1 118 1 117 1.30e-39 140
MS.gene49077.t1 AT3G28910 54.310 116 52 1 14 129 13 127 1.38e-39 140
MS.gene49077.t1 AT4G13480 61.538 104 40 0 14 117 7 110 1.39e-39 139
MS.gene49077.t1 AT5G62470 58.716 109 44 1 14 122 13 120 2.37e-39 140
MS.gene49077.t1 AT3G62610 54.701 117 52 1 1 117 1 116 4.91e-39 139
MS.gene49077.t1 AT5G57620 55.932 118 50 2 1 117 1 117 1.24e-38 138
MS.gene49077.t1 AT1G68320 55.752 113 49 1 14 126 20 131 1.66e-38 136
MS.gene49077.t1 AT5G62320 48.800 125 56 2 14 130 14 138 2.54e-38 135
MS.gene49077.t1 AT2G36890 49.254 134 66 2 1 133 1 133 2.96e-38 136
MS.gene49077.t1 AT2G36890 51.240 121 58 1 14 133 54 174 5.10e-38 136
MS.gene49077.t1 AT3G49690 52.800 125 57 2 1 124 1 124 6.26e-38 135
MS.gene49077.t1 AT5G65790 51.128 133 59 3 1 132 1 128 1.14e-37 136
MS.gene49077.t1 AT3G28470 59.184 98 40 0 14 111 13 110 2.65e-37 134
MS.gene49077.t1 AT4G37780 52.137 117 55 1 14 129 13 129 8.83e-37 132
MS.gene49077.t1 AT3G11440 56.311 103 45 0 14 116 42 144 8.85e-37 135
MS.gene49077.t1 AT2G32460 51.754 114 55 0 14 127 7 120 9.89e-37 136
MS.gene49077.t1 AT2G32460 51.754 114 55 0 14 127 19 132 1.02e-36 136
MS.gene49077.t1 AT2G47190 50.442 113 56 0 5 117 12 124 2.04e-36 130
MS.gene49077.t1 AT1G66370 55.340 103 46 0 14 116 9 111 2.44e-36 130
MS.gene49077.t1 AT3G11440 56.311 103 45 0 14 116 42 144 2.47e-36 135
MS.gene49077.t1 AT3G11440 56.311 103 45 0 14 116 42 144 2.47e-36 135
MS.gene49077.t1 AT3G11440 56.311 103 45 0 14 116 42 144 2.47e-36 135
MS.gene49077.t1 AT5G59780 54.717 106 48 0 12 117 7 112 5.18e-36 129
MS.gene49077.t1 AT5G06100 52.727 110 52 0 14 123 33 142 7.28e-36 133
MS.gene49077.t1 AT1G25340 48.387 124 63 1 12 134 17 140 1.06e-35 129
MS.gene49077.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene49077.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene49077.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene49077.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene49077.t1 AT3G06490 54.783 115 51 1 14 128 20 133 2.19e-35 129
MS.gene49077.t1 AT3G53200 56.311 103 45 0 14 116 10 112 3.00e-35 127
MS.gene49077.t1 AT2G26960 55.446 101 45 0 15 115 22 122 3.21e-35 131
MS.gene49077.t1 AT3G46130 54.808 104 47 0 14 117 10 113 3.82e-35 127
MS.gene49077.t1 AT2G26950 47.706 109 57 0 15 123 18 126 8.98e-35 129
MS.gene49077.t1 AT4G26930 54.902 102 46 0 14 115 20 121 1.98e-34 128
MS.gene49077.t1 AT1G66380 58.252 103 43 0 14 116 9 111 3.13e-34 121
MS.gene49077.t1 AT5G55020 50.909 110 54 0 14 123 27 136 3.29e-34 129
MS.gene49077.t1 AT5G49620 53.913 115 52 1 14 128 27 140 5.25e-34 125
MS.gene49077.t1 AT3G60460 51.282 117 55 2 6 121 4 119 7.04e-34 125
MS.gene49077.t1 AT1G56650 52.174 115 55 0 14 128 9 123 1.82e-33 122
MS.gene49077.t1 AT5G26660 65.882 85 28 1 44 127 12 96 1.09e-32 122
MS.gene49077.t1 AT1G66390 53.153 111 52 0 6 116 1 111 1.47e-32 120
MS.gene49077.t1 AT3G12820 71.831 71 20 0 49 119 2 72 8.81e-32 116
MS.gene49077.t1 AT1G25340 45.968 124 61 2 12 134 17 135 1.91e-31 118
MS.gene49077.t1 AT1G25340 45.968 124 61 2 12 134 17 135 3.04e-31 118
MS.gene49077.t1 AT5G35550 68.000 75 24 0 46 120 50 124 1.75e-30 115
MS.gene49077.t1 AT5G59780 64.000 75 27 0 43 117 17 91 2.13e-30 113
MS.gene49077.t1 AT5G49620 48.062 129 52 2 14 128 27 154 2.60e-30 115
MS.gene49077.t1 AT3G46130 64.000 75 27 0 43 117 17 91 3.24e-30 113
MS.gene49077.t1 AT3G46130 64.384 73 26 0 45 117 9 81 1.23e-29 112
MS.gene49077.t1 AT3G47600 53.125 96 41 1 24 119 21 112 1.68e-29 114
MS.gene49077.t1 AT3G53200 63.158 76 28 0 41 116 4 79 2.20e-29 110
MS.gene49077.t1 AT5G40350 48.039 102 48 1 46 142 5 106 2.79e-29 109
MS.gene49077.t1 AT3G27810 46.296 108 57 1 46 152 4 111 1.11e-28 108
MS.gene49077.t1 AT5G14750 60.000 70 28 0 49 118 18 87 1.04e-27 105
MS.gene49077.t1 AT5G67300 49.038 104 52 1 15 118 6 108 1.62e-27 108
MS.gene49077.t1 AT3G50060 46.789 109 57 1 15 123 6 113 5.10e-27 106
MS.gene49077.t1 AT1G69560 38.356 146 75 3 15 159 107 238 1.09e-26 106
MS.gene49077.t1 AT1G69560 38.356 146 75 3 15 159 123 254 1.31e-26 106
MS.gene49077.t1 AT4G37260 50.000 104 51 1 15 118 13 115 1.37e-26 105
MS.gene49077.t1 AT1G17950 46.078 102 54 1 15 116 5 105 2.47e-26 103
MS.gene49077.t1 AT2G23290 49.038 104 52 1 15 118 13 115 3.22e-26 104
MS.gene49077.t1 AT5G11050 31.019 216 122 5 15 214 105 309 3.84e-26 106
MS.gene49077.t1 AT5G02320 36.869 198 103 7 11 208 123 298 1.01e-25 106
MS.gene49077.t1 AT5G02320 36.869 198 103 7 11 208 123 298 1.01e-25 106
MS.gene49077.t1 AT5G02320 36.869 198 103 7 11 208 63 238 1.64e-25 105
MS.gene49077.t1 AT2G39880 50.000 106 50 2 15 119 50 153 7.58e-25 102
MS.gene49077.t1 AT3G55730 50.476 105 49 2 15 118 56 158 8.46e-25 102
MS.gene49077.t1 AT3G09230 48.039 102 52 1 15 116 55 155 1.35e-24 101
MS.gene49077.t1 AT1G73410 44.660 103 56 1 15 117 6 107 3.51e-24 97.8
MS.gene49077.t1 AT4G33450 34.752 141 81 2 2 142 6 135 4.40e-24 97.8
MS.gene49077.t1 AT1G73410 44.660 103 56 1 15 117 6 107 7.48e-24 95.9
MS.gene49077.t1 AT1G26780 44.660 103 54 2 15 116 98 198 1.08e-23 97.4
MS.gene49077.t1 AT1G26780 44.660 103 54 2 15 116 98 198 1.27e-23 98.6
MS.gene49077.t1 AT3G23250 64.407 59 21 0 59 117 1 59 1.76e-23 95.9
MS.gene49077.t1 AT5G58850 36.090 133 78 2 15 147 105 230 4.77e-23 97.8
MS.gene49077.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.06e-22 97.8
MS.gene49077.t1 AT4G32730 34.862 109 69 2 12 119 32 139 1.94e-13 70.5
MS.gene49077.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.06e-22 97.8
MS.gene49077.t1 AT4G32730 34.862 109 69 2 12 119 32 139 1.94e-13 70.5
MS.gene49077.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.06e-22 97.8
MS.gene49077.t1 AT4G32730 34.862 109 69 2 12 119 32 139 1.94e-13 70.5
MS.gene49077.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.06e-22 97.8
MS.gene49077.t1 AT4G32730 34.862 109 69 2 12 119 32 139 1.94e-13 70.5
MS.gene49077.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.14e-22 97.8
MS.gene49077.t1 AT4G32730 35.849 106 66 2 15 119 35 139 2.11e-13 70.5
MS.gene49077.t1 AT1G22640 48.780 82 41 1 59 139 1 82 1.35e-22 92.8
MS.gene49077.t1 AT5G17800 40.517 116 63 2 15 130 93 202 1.72e-22 95.1
MS.gene49077.t1 AT1G66380 59.722 72 29 0 45 116 7 78 3.20e-22 89.0
MS.gene49077.t1 AT3G09370 43.396 106 59 1 11 116 131 235 6.31e-22 95.1
MS.gene49077.t1 AT3G09370 34.862 109 69 2 12 119 80 187 3.89e-13 69.3
MS.gene49077.t1 AT4G18770 41.509 106 59 2 15 119 217 320 7.45e-22 94.4
MS.gene49077.t1 AT5G40360 39.130 115 68 2 3 117 146 258 7.58e-22 93.6
MS.gene49077.t1 AT3G09370 43.396 106 59 1 11 116 126 230 8.21e-22 94.7
MS.gene49077.t1 AT3G09370 34.862 109 69 2 12 119 75 182 4.79e-13 68.9
MS.gene49077.t1 AT3G09370 43.396 106 59 1 11 116 139 243 8.95e-22 94.7
MS.gene49077.t1 AT3G09370 34.862 109 69 2 12 119 88 195 4.22e-13 69.3
MS.gene49077.t1 AT5G11510 37.500 120 74 1 11 130 77 195 9.22e-22 95.1
MS.gene49077.t1 AT5G11510 33.019 106 69 2 15 119 29 133 6.95e-11 62.8
MS.gene49077.t1 AT5G11510 37.500 120 74 1 11 130 77 195 9.22e-22 95.1
MS.gene49077.t1 AT5G11510 33.019 106 69 2 15 119 29 133 6.95e-11 62.8
MS.gene49077.t1 AT5G11510 37.500 120 74 1 11 130 77 195 9.22e-22 95.1
MS.gene49077.t1 AT5G11510 33.019 106 69 2 15 119 29 133 6.95e-11 62.8
MS.gene49077.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.17e-21 94.7
MS.gene49077.t1 AT5G11510 33.019 106 69 2 15 119 29 133 7.99e-11 62.8
MS.gene49077.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.29e-21 94.7
MS.gene49077.t1 AT5G11510 33.019 106 69 2 15 119 29 133 8.06e-11 62.8
MS.gene49077.t1 AT1G66380 52.941 85 40 0 6 90 1 85 1.64e-21 87.0
MS.gene49077.t1 AT3G27785 38.983 118 67 2 3 116 173 289 2.41e-21 93.2
MS.gene49077.t1 AT1G71030 53.333 75 34 1 45 119 13 86 3.59e-21 88.6
MS.gene49077.t1 AT1G71030 55.882 68 30 0 52 119 5 72 3.80e-21 88.2
MS.gene49077.t1 AT3G29020 34.641 153 88 4 15 160 65 212 4.59e-21 89.4
MS.gene49077.t1 AT5G39700 36.735 147 86 3 7 151 48 189 1.62e-20 87.0
MS.gene49077.t1 AT4G25560 44.094 127 52 2 71 178 2 128 2.85e-20 87.0
MS.gene49077.t1 AT2G25230 42.000 100 56 2 18 117 29 126 2.94e-20 87.0
MS.gene49077.t1 AT5G14750 55.000 60 27 0 59 118 1 60 3.28e-20 84.7
MS.gene49077.t1 AT5G14750 55.000 60 27 0 59 118 1 60 3.28e-20 84.7
MS.gene49077.t1 AT3G29020 39.806 103 61 1 15 117 67 168 3.87e-20 88.2
MS.gene49077.t1 AT1G18960 33.613 119 75 3 15 132 10 125 4.63e-19 85.1
MS.gene49077.t1 AT2G37630 36.667 120 72 2 18 135 7 124 3.81e-18 83.6
MS.gene49077.t1 AT2G02820 37.963 108 65 2 18 124 33 139 1.71e-17 81.3
MS.gene49077.t1 AT2G02820 37.963 108 65 2 18 124 33 139 2.45e-17 81.6
MS.gene49077.t1 AT2G02820 37.963 108 65 2 18 124 33 139 3.38e-17 81.3
MS.gene49077.t1 AT4G00540 37.391 115 68 2 6 117 94 207 6.80e-17 80.1
MS.gene49077.t1 AT4G00540 29.134 127 82 3 2 120 33 159 2.32e-12 67.0
MS.gene49077.t1 AT4G00540 37.391 115 68 2 6 117 92 205 1.08e-16 79.7
MS.gene49077.t1 AT4G00540 31.579 114 70 3 15 120 44 157 5.72e-12 65.9
MS.gene49077.t1 AT1G14350 37.273 110 67 2 18 126 28 136 1.92e-16 79.0
MS.gene49077.t1 AT1G14350 37.273 110 67 2 18 126 28 136 1.92e-16 79.0
MS.gene49077.t1 AT5G40430 36.893 103 62 3 15 117 54 153 3.47e-15 73.6
MS.gene49077.t1 AT5G59780 55.319 47 21 0 71 117 1 47 1.42e-12 64.7
MS.gene49077.t1 AT3G46130 55.319 47 21 0 71 117 1 47 2.40e-12 64.7
MS.gene49077.t1 AT3G18100 30.147 136 86 2 14 145 545 675 1.68e-11 64.7
MS.gene49077.t1 AT3G18100 30.147 136 86 2 14 145 497 627 1.68e-11 64.7
MS.gene49077.t1 AT3G18100 30.147 136 86 2 14 145 384 514 1.81e-11 64.7
MS.gene49077.t1 AT3G18100 30.147 136 86 2 14 145 332 462 1.93e-11 64.3
MS.gene49077.t1 AT5G61420 55.000 60 24 2 82 140 2 59 1.96e-11 63.5

Find 52 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACCAACCTGCCTTAAT+TGG 0.183204 1.3:+69549381 None:intergenic
AACAACCATGACCATGTTTA+AGG 0.206159 1.3:+69549415 None:intergenic
AACAAATTCAGTTGAATCTT+TGG 0.217456 1.3:-69547576 MS.gene49077:CDS
ATCTCATTGTCTGTCCTTCC+TGG 0.240508 1.3:+69547845 None:intergenic
CTGAGTTTGTGATCTTCTTC+AGG 0.242651 1.3:+69549447 None:intergenic
GCAAATCAAATTGTGGGAAA+TGG 0.281472 1.3:-69547419 MS.gene49077:CDS
TTGGAGCTCTGTCCCAATTA+AGG 0.299321 1.3:-69549394 MS.gene49077:CDS
CAAAACATAGAAAAGGTTTA+TGG 0.327160 1.3:-69549473 MS.gene49077:CDS
CATTCAGCAAACAATAGTTT+TGG 0.334613 1.3:+69547632 None:intergenic
TGATTCCATTTCCATAGCTT+TGG 0.339299 1.3:+69547784 None:intergenic
TAAGGTGGATTAACTATCTA+AGG 0.341722 1.3:-69548987 MS.gene49077:CDS
GGTGCTTTGATGTGTCTCTT+TGG 0.342200 1.3:+69547658 None:intergenic
CAAATCAAATTGTGGGAAAT+GGG 0.348116 1.3:-69547418 MS.gene49077:CDS
CATTGGATCATGTTAATAGT+AGG 0.371174 1.3:-69547604 MS.gene49077:CDS
AACTTTCCTCTCTTTAATCC+TGG 0.382456 1.3:+69548964 None:intergenic
GTTTGCTGAATGGCTTTCAT+TGG 0.388754 1.3:-69547621 MS.gene49077:CDS
CAAAACTATTGTTTGCTGAA+TGG 0.398678 1.3:-69547631 MS.gene49077:CDS
GGGTTTGTCCATTGCATGCC+TGG 0.405137 1.3:-69547398 MS.gene49077:CDS
GAATCTTTGGTCATGAGAAA+TGG 0.412406 1.3:-69547563 MS.gene49077:CDS
GAGAGGAAAGTTCAGCAAAC+AGG 0.416883 1.3:-69548953 MS.gene49077:CDS
TTAAACATGGTCATGGTTGT+TGG 0.431623 1.3:-69549413 MS.gene49077:CDS
AAATTTGCAAATCAAATTGT+GGG 0.441722 1.3:-69547425 MS.gene49077:CDS
TAAATTTGCAAATCAAATTG+TGG 0.468216 1.3:-69547426 MS.gene49077:CDS
AGTGGCCAAAGCTATGGAAA+TGG 0.470398 1.3:-69547789 MS.gene49077:CDS
CTCACCCTTCATCACATGTT+AGG 0.480777 1.3:-69548916 MS.gene49077:CDS
GAAACCAACCTGCCTTAATT+GGG 0.488214 1.3:+69549382 None:intergenic
AATGATGCAATGTACGTTTG+AGG 0.502056 1.3:-69547344 None:intergenic
ATGCAAGAGGGACCATTCAA+TGG 0.504386 1.3:-69547506 MS.gene49077:CDS
ACAAAACCAAAACATAGAAA+AGG 0.509605 1.3:-69549480 MS.gene49077:CDS
AAAGAGAGTGGCCAAAGCTA+TGG 0.515504 1.3:-69547795 MS.gene49077:CDS
TTATGAAACTCTCCATTGAA+TGG 0.518250 1.3:+69547494 None:intergenic
TGTATAGGCTTGCAAAGGAA+TGG 0.519565 1.3:-69549024 MS.gene49077:intron
TGGATTAACTATCTAAGGCC+AGG 0.519824 1.3:-69548982 MS.gene49077:CDS
AAAGTTCAGCAAACAGGAGG+AGG 0.533564 1.3:-69548947 MS.gene49077:CDS
GTGATGTTGTTATAATTGTG+TGG 0.534849 1.3:+69547680 None:intergenic
AGCTCTGTCCCAATTAAGGC+AGG 0.541894 1.3:-69549390 MS.gene49077:intron
CATCTCAGTGGCTGAAATGT+TGG 0.543027 1.3:+69547463 None:intergenic
TTGTTACTTAAATCAACTCC+AGG 0.543581 1.3:+69547380 None:intergenic
CAGATAGCACAACATTTGCC+AGG 0.553213 1.3:-69547863 MS.gene49077:CDS
TGTTGCCTAACATGTGATGA+AGG 0.568808 1.3:+69548911 None:intergenic
AATCAACTCCAGGCATGCAA+TGG 0.573572 1.3:+69547390 None:intergenic
TAGCACAACATTTGCCAGGA+AGG 0.581725 1.3:-69547859 MS.gene49077:CDS
TCAAGAAGCTACAATGCAAG+AGG 0.583454 1.3:-69547519 MS.gene49077:CDS
TACATCCTTAAACATGGTCA+TGG 0.598095 1.3:-69549420 MS.gene49077:CDS
CTAAGGCCAGGATTAAAGAG+AGG 0.629264 1.3:-69548970 MS.gene49077:CDS
AGGAAAGTTCAGCAAACAGG+AGG 0.649041 1.3:-69548950 MS.gene49077:CDS
CAAGAAGCTACAATGCAAGA+GGG 0.649433 1.3:-69547518 MS.gene49077:CDS
ATACATGTATAGGCTTGCAA+AGG 0.656359 1.3:-69549029 MS.gene49077:intron
AGAAACTACATCCTTAAACA+TGG 0.675410 1.3:-69549426 MS.gene49077:CDS
CTAACATGTGATGAAGGGTG+AGG 0.683728 1.3:+69548917 None:intergenic
GTTGCCTAACATGTGATGAA+GGG 0.702714 1.3:+69548912 None:intergenic
CTGTGAATTGAACATCTCAG+TGG 0.748090 1.3:+69547451 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATTAACTTAAATTATAT+TGG - chr1.3:69548953-69548972 MS.gene49077:CDS 10.0%
!!! TTTTAGATAATTTTAAATAG+TGG + chr1.3:69548487-69548506 None:intergenic 10.0%
!! ATATTAAATCATCTATCAAA+TGG + chr1.3:69548461-69548480 None:intergenic 15.0%
!!! TTTAAGTTAGAGAATATAAT+TGG - chr1.3:69548060-69548079 MS.gene49077:intron 15.0%
!! AAATTTGCAAATCAAATTGT+GGG - chr1.3:69549425-69549444 MS.gene49077:CDS 20.0%
!! ACAATGAGATAAAAAACTAT+TGG - chr1.3:69549018-69549037 MS.gene49077:CDS 20.0%
!! ACCTACTTATAAATATGATT+AGG + chr1.3:69547519-69547538 None:intergenic 20.0%
!! CCTACTTATAAATATGATTA+GGG + chr1.3:69547518-69547537 None:intergenic 20.0%
!! TAAATTTGCAAATCAAATTG+TGG - chr1.3:69549424-69549443 MS.gene49077:CDS 20.0%
!! TAACTTAAATTATATTGGTC+AGG - chr1.3:69548958-69548977 MS.gene49077:CDS 20.0%
!! TATTCAATTGTTCTATCTAA+TGG - chr1.3:69547787-69547806 MS.gene49077:CDS 20.0%
!!! TTGATTTTTGCTAAAATGTA+TGG - chr1.3:69547732-69547751 MS.gene49077:CDS 20.0%
!!! TTTATTTTATAGAAGCAACT+AGG - chr1.3:69548112-69548131 MS.gene49077:intron 20.0%
!!! TTTGTTTTCCTTTGTTTTTA+TGG - chr1.3:69548634-69548653 MS.gene49077:intron 20.0%
! AACAAATTCAGTTGAATCTT+TGG - chr1.3:69549274-69549293 MS.gene49077:intron 25.0%
! AATATACAGAATTGAGGAAT+AGG + chr1.3:69548259-69548278 None:intergenic 25.0%
! ACAAAACCAAAACATAGAAA+AGG - chr1.3:69547370-69547389 MS.gene49077:CDS 25.0%
! AGTTTGAATATACAGAATTG+AGG + chr1.3:69548265-69548284 None:intergenic 25.0%
! CAAAACATAGAAAAGGTTTA+TGG - chr1.3:69547377-69547396 MS.gene49077:CDS 25.0%
! CCCTAATCATATTTATAAGT+AGG - chr1.3:69547515-69547534 MS.gene49077:CDS 25.0%
! CTTATCATCCTTCATTTAAA+GGG + chr1.3:69548933-69548952 None:intergenic 25.0%
! GTTAGAGAATATAATTGGAT+TGG - chr1.3:69548065-69548084 MS.gene49077:intron 25.0%
! TCATTTATTTCCAATTACCA+AGG - chr1.3:69548396-69548415 MS.gene49077:intron 25.0%
! TCTTATCATCCTTCATTTAA+AGG + chr1.3:69548934-69548953 None:intergenic 25.0%
! TGGAAGAAAAAAAAAAAGCA+TGG - chr1.3:69548145-69548164 MS.gene49077:intron 25.0%
! TGTTAGTTCCATAAAAACAA+AGG + chr1.3:69548645-69548664 None:intergenic 25.0%
! TTCATATTTGAAAAAGAGAG+TGG - chr1.3:69549043-69549062 MS.gene49077:intron 25.0%
!! AAAAGTCTAATGATGATGAA+CGG - chr1.3:69548503-69548522 MS.gene49077:intron 25.0%
!! AATTCACTACTTTGAACTTT+TGG + chr1.3:69548028-69548047 None:intergenic 25.0%
!! CATAAACCTTTTCTATGTTT+TGG + chr1.3:69547379-69547398 None:intergenic 25.0%
!! CATGCTCTTCTTTTTAATAA+TGG - chr1.3:69548206-69548225 MS.gene49077:intron 25.0%
!! TCTTTAGAAGTAGAAGTTTA+CGG - chr1.3:69548529-69548548 MS.gene49077:intron 25.0%
!!! TCTTTTTTCCCTTTAAATGA+AGG - chr1.3:69548922-69548941 MS.gene49077:CDS 25.0%
AGAAACTACATCCTTAAACA+TGG - chr1.3:69547424-69547443 MS.gene49077:CDS 30.0%
AGAGATGAAATAAACCTATG+TGG - chr1.3:69548419-69548438 MS.gene49077:intron 30.0%
ATGTCATCGTCTTAATAGTA+AGG + chr1.3:69548722-69548741 None:intergenic 30.0%
CAAATCAAATTGTGGGAAAT+GGG - chr1.3:69549432-69549451 MS.gene49077:CDS 30.0%
CATTGGATCATGTTAATAGT+AGG - chr1.3:69549246-69549265 MS.gene49077:intron 30.0%
CTTAAATTATATTGGTCAGG+TGG - chr1.3:69548961-69548980 MS.gene49077:CDS 30.0%
GTACAATGTCATACATGTAT+AGG - chr1.3:69547811-69547830 MS.gene49077:CDS 30.0%
GTGATGTTGTTATAATTGTG+TGG + chr1.3:69549173-69549192 None:intergenic 30.0%
TCAACAGTTCTTAATAGCTA+AGG + chr1.3:69547716-69547735 None:intergenic 30.0%
TTATGAAACTCTCCATTGAA+TGG + chr1.3:69549359-69549378 None:intergenic 30.0%
TTCAAACTAAGCCTATTTCA+AGG - chr1.3:69548277-69548296 MS.gene49077:intron 30.0%
TTGGTTTCTTTCTTCTTCAA+AGG - chr1.3:69547483-69547502 MS.gene49077:CDS 30.0%
! AAAAAAAAGCATGGCTTGAT+TGG - chr1.3:69548154-69548173 MS.gene49077:intron 30.0%
! AGAGAATATAATTGGATTGG+AGG - chr1.3:69548068-69548087 MS.gene49077:intron 30.0%
! CAAAACTATTGTTTGCTGAA+TGG - chr1.3:69549219-69549238 MS.gene49077:intron 30.0%
! CATTCAGCAAACAATAGTTT+TGG + chr1.3:69549221-69549240 None:intergenic 30.0%
! GAGAATATAATTGGATTGGA+GGG - chr1.3:69548069-69548088 MS.gene49077:intron 30.0%
! TTGTTACTTAAATCAACTCC+AGG + chr1.3:69549473-69549492 None:intergenic 30.0%
!! ATTTAAAGTTTTTGCTCGTG+AGG - chr1.3:69547546-69547565 MS.gene49077:CDS 30.0%
!! TAAGGTGGATTAACTATCTA+AGG - chr1.3:69547863-69547882 MS.gene49077:CDS 30.0%
!!! AGCAAACAATAGTTTTGGTA+AGG + chr1.3:69549216-69549235 None:intergenic 30.0%
!!! TTTGGTTTTGTCTTTTCTAG+TGG + chr1.3:69547361-69547380 None:intergenic 30.0%
AAAACACCATCGATCATCAT+TGG + chr1.3:69548669-69548688 None:intergenic 35.0%
AAACACCATCGATCATCATT+GGG + chr1.3:69548668-69548687 None:intergenic 35.0%
AAACCTATGTGGTGAGATTT+GGG - chr1.3:69548430-69548449 MS.gene49077:intron 35.0%
AACAACCATGACCATGTTTA+AGG + chr1.3:69547438-69547457 None:intergenic 35.0%
AACTTTCCTCTCTTTAATCC+TGG + chr1.3:69547889-69547908 None:intergenic 35.0%
AGCAACTAGGCTGTATTTAA+TGG - chr1.3:69548125-69548144 MS.gene49077:intron 35.0%
AGGTTTATTTCATCTCTCCT+TGG + chr1.3:69548416-69548435 None:intergenic 35.0%
ATACATGTATAGGCTTGCAA+AGG - chr1.3:69547821-69547840 MS.gene49077:CDS 35.0%
ATGTTTACTATGATCGGTGT+TGG - chr1.3:69548560-69548579 MS.gene49077:intron 35.0%
CTCCTCATGTTTACTATGAT+CGG - chr1.3:69548554-69548573 MS.gene49077:intron 35.0%
GAATCTTTGGTCATGAGAAA+TGG - chr1.3:69549287-69549306 MS.gene49077:intron 35.0%
GCAAATCAAATTGTGGGAAA+TGG - chr1.3:69549431-69549450 MS.gene49077:CDS 35.0%
GGAACACATAACCTTGAAAT+AGG + chr1.3:69548291-69548310 None:intergenic 35.0%
GTGAAGGAAAACTCTATAGA+AGG + chr1.3:69548312-69548331 None:intergenic 35.0%
TAAACCTATGTGGTGAGATT+TGG - chr1.3:69548429-69548448 MS.gene49077:intron 35.0%
TACATCCTTAAACATGGTCA+TGG - chr1.3:69547430-69547449 MS.gene49077:CDS 35.0%
TGATTCCATTTCCATAGCTT+TGG + chr1.3:69549069-69549088 None:intergenic 35.0%
TTAAACATGGTCATGGTTGT+TGG - chr1.3:69547437-69547456 MS.gene49077:CDS 35.0%
! CTACTGATTGAAGTTTGTGA+AGG + chr1.3:69548328-69548347 None:intergenic 35.0%
! GAAGTTTAAGATTCTCCTTG+TGG + chr1.3:69548860-69548879 None:intergenic 35.0%
! TTTCATCTCTCCTTGGTAAT+TGG + chr1.3:69548409-69548428 None:intergenic 35.0%
!! GTTGCAAGTTTTTGAAGAGA+GGG + chr1.3:69549143-69549162 None:intergenic 35.0%
!! TGTTGCAAGTTTTTGAAGAG+AGG + chr1.3:69549144-69549163 None:intergenic 35.0%
AACCTATGTGGTGAGATTTG+GGG - chr1.3:69548431-69548450 MS.gene49077:intron 40.0%
AGAAACCAACCTGCCTTAAT+TGG + chr1.3:69547472-69547491 None:intergenic 40.0%
ATGGAAAAAGCTGCAGACTA+AGG - chr1.3:69547845-69547864 MS.gene49077:CDS 40.0%
CAAGAAGCTACAATGCAAGA+GGG - chr1.3:69549332-69549351 MS.gene49077:intron 40.0%
CACCGATCATAGTAAACATG+AGG + chr1.3:69548559-69548578 None:intergenic 40.0%
CTGAGTTTGTGATCTTCTTC+AGG + chr1.3:69547406-69547425 None:intergenic 40.0%
CTGTGAATTGAACATCTCAG+TGG + chr1.3:69549402-69549421 None:intergenic 40.0%
CTTGATTGGTAAGTCAAACC+AGG - chr1.3:69548168-69548187 MS.gene49077:intron 40.0%
GAAACCAACCTGCCTTAATT+GGG + chr1.3:69547471-69547490 None:intergenic 40.0%
GTTGCCTAACATGTGATGAA+GGG + chr1.3:69547941-69547960 None:intergenic 40.0%
TAACACCCAATGATGATCGA+TGG - chr1.3:69548660-69548679 MS.gene49077:intron 40.0%
TCAAGAAGCTACAATGCAAG+AGG - chr1.3:69549331-69549350 MS.gene49077:intron 40.0%
TCGTCTTAATAGTAAGGACG+AGG + chr1.3:69548716-69548735 None:intergenic 40.0%
TGGTAAGTCAAACCAGGAAT+TGG - chr1.3:69548174-69548193 MS.gene49077:intron 40.0%
TGTATAGGCTTGCAAAGGAA+TGG - chr1.3:69547826-69547845 MS.gene49077:CDS 40.0%
TGTTGCCTAACATGTGATGA+AGG + chr1.3:69547942-69547961 None:intergenic 40.0%
! GTTTGCTGAATGGCTTTCAT+TGG - chr1.3:69549229-69549248 MS.gene49077:intron 40.0%
! TGGATTAACTATCTAAGGCC+AGG - chr1.3:69547868-69547887 MS.gene49077:CDS 40.0%
!! GTTTTGTCTTTTCTAGTGGC+TGG + chr1.3:69547357-69547376 None:intergenic 40.0%
AAAGAGAGTGGCCAAAGCTA+TGG - chr1.3:69549055-69549074 MS.gene49077:intron 45.0%
AAAGTTCAGCAAACAGGAGG+AGG - chr1.3:69547903-69547922 MS.gene49077:intron 45.0%
AATCAACTCCAGGCATGCAA+TGG + chr1.3:69549463-69549482 None:intergenic 45.0%
AGGAAAGTTCAGCAAACAGG+AGG - chr1.3:69547900-69547919 MS.gene49077:intron 45.0%
AGTCAAACCAGGAATTGGCT+TGG - chr1.3:69548179-69548198 MS.gene49077:intron 45.0%
AGTGGCCAAAGCTATGGAAA+TGG - chr1.3:69549061-69549080 MS.gene49077:intron 45.0%
ATCTCATTGTCTGTCCTTCC+TGG + chr1.3:69549008-69549027 None:intergenic 45.0%
ATGCAAGAGGGACCATTCAA+TGG - chr1.3:69549344-69549363 MS.gene49077:intron 45.0%
ATGCTAACCAAGCCAATTCC+TGG + chr1.3:69548189-69548208 None:intergenic 45.0%
CAGATAGCACAACATTTGCC+AGG - chr1.3:69548987-69549006 MS.gene49077:CDS 45.0%
CATCTCAGTGGCTGAAATGT+TGG + chr1.3:69549390-69549409 None:intergenic 45.0%
CTAACATGTGATGAAGGGTG+AGG + chr1.3:69547936-69547955 None:intergenic 45.0%
CTAAGGCCAGGATTAAAGAG+AGG - chr1.3:69547880-69547899 MS.gene49077:intron 45.0%
CTCACCCTTCATCACATGTT+AGG - chr1.3:69547934-69547953 MS.gene49077:intron 45.0%
GAAAAAGCTGCAGACTAAGG+TGG - chr1.3:69547848-69547867 MS.gene49077:CDS 45.0%
GACTATGACGCAATAGGTGT+TGG + chr1.3:69548833-69548852 None:intergenic 45.0%
GAGAGGAAAGTTCAGCAAAC+AGG - chr1.3:69547897-69547916 MS.gene49077:intron 45.0%
GGTGCTTTGATGTGTCTCTT+TGG + chr1.3:69549195-69549214 None:intergenic 45.0%
GGTTGAGACTATGACGCAAT+AGG + chr1.3:69548839-69548858 None:intergenic 45.0%
TAGCACAACATTTGCCAGGA+AGG - chr1.3:69548991-69549010 MS.gene49077:CDS 45.0%
TTGGAGCTCTGTCCCAATTA+AGG - chr1.3:69547456-69547475 MS.gene49077:CDS 45.0%
!!! AATAAATAAATTAACATTTT+AGG + chr1.3:69547599-69547618 None:intergenic 5.0%
AGCTCTGTCCCAATTAAGGC+AGG - chr1.3:69547460-69547479 MS.gene49077:CDS 50.0%
CACCCCAAATCTCACCACAT+AGG + chr1.3:69548436-69548455 None:intergenic 50.0%
CTATGTGGTGAGATTTGGGG+TGG - chr1.3:69548434-69548453 MS.gene49077:intron 50.0%
CTGTCCCAATTAAGGCAGGT+TGG - chr1.3:69547464-69547483 MS.gene49077:CDS 50.0%
GCGTCATAGTCTCAACCACA+AGG - chr1.3:69548842-69548861 MS.gene49077:intron 50.0%
GGGTTTGTCCATTGCATGCC+TGG - chr1.3:69549452-69549471 MS.gene49077:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 69547346 69549526 69547346 ID=MS.gene49077
chr1.3 mRNA 69547346 69549526 69547346 ID=MS.gene49077.t1;Parent=MS.gene49077
chr1.3 exon 69549391 69549526 69549391 ID=MS.gene49077.t1.exon1;Parent=MS.gene49077.t1
chr1.3 CDS 69549391 69549526 69549391 ID=cds.MS.gene49077.t1;Parent=MS.gene49077.t1
chr1.3 exon 69548910 69549039 69548910 ID=MS.gene49077.t1.exon2;Parent=MS.gene49077.t1
chr1.3 CDS 69548910 69549039 69548910 ID=cds.MS.gene49077.t1;Parent=MS.gene49077.t1
chr1.3 exon 69547346 69547892 69547346 ID=MS.gene49077.t1.exon3;Parent=MS.gene49077.t1
chr1.3 CDS 69547346 69547892 69547346 ID=cds.MS.gene49077.t1;Parent=MS.gene49077.t1
Gene Sequence

>MS.gene49077

ATGGGGTTCCAGCCACTAGAAAAGACAAAACCAAAACATAGAAAAGGTTTATGGTCACCTGAAGAAGATCACAAACTCAGAAACTACATCCTTAAACATGGTCATGGTTGTTGGAGCTCTGTCCCAATTAAGGCAGGTTGGTTTCTTTCTTCTTCAAAGGTGTATTATTCCCTAATCATATTTATAAGTAGGTCATTGTAATTTAAAGTTTTTGCTCGTGAGGTGTCAGCTTTGTAGTAAGAGTTTGAATCCTAAAATGTTAATTTATTTATTTTTGAAAGAGTCACGTTAATTAATAGTAATGATTTCTCTCTTTCTTATATTTACTTTCAAAAAGTTCTTGTGCTACTGAAGTTTTTAATTAAGTCCTTAGCTATTAAGAACTGTTGATTTTTGCTAAAATGTATGGATTGATTTGAAGAATCATAGTGTATAAGATCATATTCAATTGTTCTATCTAATGGAGTACAATGTCATACATGTATAGGCTTGCAAAGGAATGGAAAAAGCTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGAAAGTTCAGCAAACAGGAGGAGGAAACAATCCTCACCCTTCATCACATGTTAGGCAACAAGTATGTTAGTAGAGTAAATCTACTTTTACTTTTTGTCATTTTTTTTCTAAGTTCAATTTTATCCAAAAGTTCAAAGTAGTGAATTTAATGTGAAAGTTTTAAGTTAGAGAATATAATTGGATTGGAGGGTAGTTTCATATATAATTTTATTTATTTTATAGAAGCAACTAGGCTGTATTTAATGGAAGAAAAAAAAAAAGCATGGCTTGATTGGTAAGTCAAACCAGGAATTGGCTTGGTTAGCATGCTCTTCTTTTTAATAATGGATGAACATTGAACAAAATATTGATTATCCTATTCCTCAATTCTGTATATTCAAACTAAGCCTATTTCAAGGTTATGTGTTCCTTCTATAGAGTTTTCCTTCACAAACTTCAATCAGTAGTATTAATTGCTACACACACATGCACATTGCATACTCGATGAGATTAATTCATTTATTTCCAATTACCAAGGAGAGATGAAATAAACCTATGTGGTGAGATTTGGGGTGGACCATTTGATAGATGATTTAATATGAACCACTATTTAAAATTATCTAAAAGTCTAATGATGATGAACGGCGTTCTTTAGAAGTAGAAGTTTACGGTACTCCTCATGTTTACTATGATCGGTGTTGGTTTGACAAAAACAAAGAAAAACAAATATGAATTGAGTTTGAAGAATGCATATTTGTTTTCCTTTGTTTTTATGGAACTAACACCCAATGATGATCGATGGTGTTTTTTAGAAATAGAAGTTCATAGCGTTCCTCGTCCTTACTATTAAGACGATGACATGATCAGCGTCAGTTTGACAAAAACAAAGAAAAACAAATATGAATTGAGTTTTGAAGAACACATATTTGTTTTTCTTTGTTTTATCGAACCAACACCTATTGCGTCATAGTCTCAACCACAAGGAGAATCTTAAACTTCTACTTTCAAAAGACGACGTACGAGATTCATGTACTCGTTTAATCTTTTTTCCCTTTAAATGAAGGATGATAAGAGAATTAACTTAAATTATATTGGTCAGGTGGTCACAGATAGCACAACATTTGCCAGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTATGGAAATGGAATCACACAAACAATTTCAATATGCTAGCTCAAGCTCAGATACAATGAACTCTTCACCCTCTCTTCAAAAACTTGCAACACAAGATCCACACAATTATAACAACATCACCAAAGAGACACATCAAAGCACCTTACCAAAACTATTGTTTGCTGAATGGCTTTCATTGGATCATGTTAATAGTAGGAACTCAACAAATTCAGTTGAATCTTTGGTCATGAGAAATGGATTTGATCAAAATTCAGCTTTTCAAGAAGCTACAATGCAAGAGGGACCATTCAATGGAGAGTTTCATAATAGTGTGACCAACATTTCAGCCACTGAGATGTTCAATTCACAGCTTAAATTTGCAAATCAAATTGTGGGAAATGGGTTTGTCCATTGCATGCCTGGAGTTGATTTAAGTAACAATTTCAATCTAAGCAATGATGCAATGTACGTTTGA
Protein sequence

>MS.gene49077.t1

MGFQPLEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKAMEMESHKQFQYASSSSDTMNSSPSLQKLATQDPHNYNNITKETHQSTLPKLLFAEWLSLDHVNSRNSTNSVESLVMRNGFDQNSAFQEATMQEGPFNGEFHNSVTNISATEMFNSQLKFANQIVGNGFVHCMPGVDLSNNFNLSNDAMYV