AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49079

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49079.t1 MTR_1g100653 90.141 213 11 1 66 278 89 291 1.60e-136 388
MS.gene49079.t1 MTR_7g076740 42.982 228 89 9 66 270 90 299 1.20e-36 133
MS.gene49079.t1 MTR_8g031360 36.681 229 95 8 66 267 91 296 2.86e-34 126
MS.gene49079.t1 MTR_7g011170 48.454 97 38 3 66 151 89 184 2.50e-17 80.9
MS.gene49079.t1 MTR_4g082290 50.588 85 32 2 66 141 89 172 1.31e-15 77.0
MS.gene49079.t1 MTR_4g082230 50.588 85 32 2 66 141 89 172 1.43e-15 76.6
MS.gene49079.t1 MTR_6g012690 51.807 83 32 3 66 140 89 171 1.92e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49079.t1 AT3G61250 38.655 238 111 8 41 267 64 277 9.70e-33 122
MS.gene49079.t1 AT5G15310 50.000 86 37 1 63 142 7 92 1.84e-17 80.5
MS.gene49079.t1 AT3G01140 51.807 83 34 1 66 142 89 171 3.97e-17 80.9
MS.gene49079.t1 AT3G01140 51.807 83 34 1 66 142 132 214 4.97e-17 80.9
MS.gene49079.t1 AT5G15310 50.602 83 35 1 66 142 89 171 2.66e-16 78.2
MS.gene49079.t1 AT5G15310 50.602 83 35 1 66 142 89 171 2.97e-16 78.2
MS.gene49079.t1 AT5G15310 50.602 83 35 1 66 142 89 171 3.29e-16 77.0

Find 74 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGGACACGTTTCTTTAAA+TGG 0.094066 1.3:+69514836 None:intergenic
GCTTTGGTGTCGACACTTTC+AGG 0.182498 1.3:+69514479 None:intergenic
AAGCTTCAGTTTGTAGTTAC+TGG 0.214754 1.3:+69514423 None:intergenic
TAAGTTTACCTACCAGTTTA+TGG 0.229291 1.3:-69513947 MS.gene49079:CDS
ATCACTATCATCATCGAAAT+TGG 0.245454 1.3:-69514551 MS.gene49079:CDS
GAGTCCACTTTACTTAATTC+AGG 0.278734 1.3:-69514688 MS.gene49079:CDS
GATAGATCTGGTTCAGATTC+AGG 0.282629 1.3:-69514394 MS.gene49079:CDS
TTATATTGATCTGACACTTA+TGG 0.286253 1.3:-69515327 MS.gene49079:CDS
CTGCGTATGCCTGATGAAAT+AGG 0.293386 1.3:-69514325 MS.gene49079:CDS
ATCTCATTGTCTGTTCTTCC+TGG 0.294103 1.3:+69514877 None:intergenic
CTGATTACTTTCTTCAACTT+TGG 0.303149 1.3:-69514645 MS.gene49079:CDS
GTGTCTAGGGACGACGAGTT+TGG 0.321915 1.3:-69515429 MS.gene49079:CDS
TGAAGATGTTGACGTGATTC+AGG 0.322004 1.3:-69514455 MS.gene49079:CDS
TGAATCACGTCAACATCTTC+AGG 0.331077 1.3:+69514457 None:intergenic
GCCTGATGAAATAGGATTCC+TGG 0.344813 1.3:-69514317 MS.gene49079:CDS
TGTCTAGGGACGACGAGTTT+GGG 0.380631 1.3:-69515428 MS.gene49079:CDS
CAAAGTTGAAGAAAGTAATC+AGG 0.381478 1.3:+69514646 None:intergenic
CATCGGGTTTGTTCGTGTCT+AGG 0.382264 1.3:-69515443 MS.gene49079:CDS
AATTTCTTGAATCTCCTTGA+TGG 0.383750 1.3:-69514283 MS.gene49079:intron
CCGGACACGTTTCTTTAAAT+GGG 0.388694 1.3:+69514837 None:intergenic
ACAATGAGATTAAGAACTAT+TGG 0.389201 1.3:-69514864 MS.gene49079:CDS
CAACCCTTGCACTTTCCCAC+TGG 0.391631 1.3:+69514734 None:intergenic
GTCCATGTTTAGAGGGGAAA+AGG 0.407013 1.3:-69513995 MS.gene49079:intron
CAACTTTGGCATTCTGATGT+TGG 0.417033 1.3:-69514631 MS.gene49079:CDS
ATCGGGTTTGTTCGTGTCTA+GGG 0.425563 1.3:-69515442 MS.gene49079:CDS
GTGTTCAGACGTCTCATTGC+AGG 0.435348 1.3:-69514524 MS.gene49079:CDS
TGGACCATGTGGCGTGTAGA+AGG 0.435919 1.3:+69514754 None:intergenic
TTAGACTGGACATTCCTATC+AGG 0.436155 1.3:+69514781 None:intergenic
TATACTCTACATCCATAAAC+TGG 0.437107 1.3:+69513935 None:intergenic
ACGTCAACATCTTCAGGCTT+TGG 0.441280 1.3:+69514463 None:intergenic
ATCCATGTCTCCTTCCTGAT+AGG 0.449112 1.3:-69514795 MS.gene49079:CDS
CCCAGGAATCCTATTTCATC+AGG 0.453232 1.3:+69514316 None:intergenic
AAACGTGTCCGGCAGTCACT+AGG 0.471555 1.3:-69514826 MS.gene49079:CDS
GAAAAGGGTGGACAGAGAAA+TGG 0.476368 1.3:-69513979 MS.gene49079:CDS
AAAGAGAGAAGAATGAGTTA+TGG 0.478313 1.3:-69515822 None:intergenic
AGACCCGGTCGTAGAGCATC+GGG 0.494214 1.3:-69515459 MS.gene49079:CDS
TCTCAAGGTGGGAGCGAACA+AGG 0.500673 1.3:+69515366 None:intergenic
AGAGCCTGAATTAAGTAAAG+TGG 0.511981 1.3:+69514684 None:intergenic
AACGTGTCCGGCAGTCACTA+GGG 0.513368 1.3:-69514825 MS.gene49079:CDS
AAGCTTGAAGATGATAGATC+TGG 0.524702 1.3:-69514406 MS.gene49079:CDS
CCTGATGAAATAGGATTCCT+GGG 0.529222 1.3:-69514316 MS.gene49079:CDS
AGCAGAGACGAGGCTGTCGT+TGG 0.533698 1.3:-69514710 MS.gene49079:CDS
GCTCCCACCTTGAGATTACT+AGG 0.534425 1.3:-69515358 MS.gene49079:CDS
TCTAAAGAATCACCGAGATA+AGG 0.542911 1.3:-69515405 MS.gene49079:CDS
CCCATTTAAAGAAACGTGTC+CGG 0.543989 1.3:-69514837 MS.gene49079:CDS
GCTATAGCAGCTCAACTACC+AGG 0.548333 1.3:-69514895 MS.gene49079:CDS
TGGTCCAGTGGGAAAGTGCA+AGG 0.548860 1.3:-69514738 MS.gene49079:CDS
TCCATGTTTAGAGGGGAAAA+GGG 0.552840 1.3:-69513994 MS.gene49079:intron
CAAACCCGATGCTCTACGAC+CGG 0.554331 1.3:+69515455 None:intergenic
TAGACCCGGTCGTAGAGCAT+CGG 0.567115 1.3:-69515460 MS.gene49079:CDS
AGAAATTGTCAGTATGTCCC+AGG 0.567136 1.3:+69514299 None:intergenic
CACTTTCCCACTGGACCATG+TGG 0.567896 1.3:+69514743 None:intergenic
AAAGTTGAAGAAAGTAATCA+GGG 0.574085 1.3:+69514647 None:intergenic
CTTAGTCACATCTACCATCA+AGG 0.575358 1.3:+69514269 None:intergenic
GTGTAGAAGGAGAATTAGAC+TGG 0.576721 1.3:+69514767 None:intergenic
TTCCTATCAGGAAGGAGACA+TGG 0.585054 1.3:+69514793 None:intergenic
TTCTCCTTCTACACGCCACA+TGG 0.594646 1.3:-69514758 MS.gene49079:CDS
CTCAAGGTGGGAGCGAACAA+GGG 0.597966 1.3:+69515367 None:intergenic
GCTACACATTTAGTTACTGT+AGG 0.611793 1.3:+69515299 None:intergenic
CAAGGGTTGAAGCAGAGACG+AGG 0.615393 1.3:-69514720 MS.gene49079:CDS
TTTCATCAGGCATACGCAGT+AGG 0.616891 1.3:+69514329 None:intergenic
TACACGCCACATGGTCCAGT+GGG 0.619297 1.3:-69514749 MS.gene49079:CDS
AGTTTGACCTAGTAATCTCA+AGG 0.628326 1.3:+69515351 None:intergenic
TGACCTAGTAATCTCAAGGT+GGG 0.629460 1.3:+69515355 None:intergenic
AAACCCGATGCTCTACGACC+GGG 0.637158 1.3:+69515456 None:intergenic
GGTCCAGTGGGAAAGTGCAA+GGG 0.640638 1.3:-69514737 MS.gene49079:CDS
ACGTGTCCGGCAGTCACTAG+GGG 0.641693 1.3:-69514824 MS.gene49079:CDS
GTTGGAGAGAAATTCCGCGC+AGG 0.642387 1.3:-69514613 MS.gene49079:CDS
CTACACGCCACATGGTCCAG+TGG 0.643084 1.3:-69514750 MS.gene49079:CDS
ACTGGACATTCCTATCAGGA+AGG 0.646417 1.3:+69514785 None:intergenic
CTCTACATCCATAAACTGGT+AGG 0.652746 1.3:+69513939 None:intergenic
ATGTTTAGAGGGGAAAAGGG+TGG 0.662181 1.3:-69513991 MS.gene49079:intron
TTGACCTAGTAATCTCAAGG+TGG 0.679897 1.3:+69515354 None:intergenic
TTTGACACACTACTCCTGCG+CGG 0.768899 1.3:+69514599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATATATATAATCAAAAA+CGG - chr1.3:69514113-69514132 MS.gene49079:intron 10.0%
!! AAAATGAAGATATCACAAAA+AGG + chr1.3:69515690-69515709 None:intergenic 20.0%
!!! CAAAACAAAACTTTTACAAT+AGG + chr1.3:69514157-69514176 None:intergenic 20.0%
! AAAGTTGAAGAAAGTAATCA+GGG + chr1.3:69515107-69515126 None:intergenic 25.0%
! ACAATGAGATTAAGAACTAT+TGG - chr1.3:69514887-69514906 MS.gene49079:CDS 25.0%
! TATGTATGTTTACTACAAGT+AGG - chr1.3:69514548-69514567 MS.gene49079:CDS 25.0%
! TTATATTGATCTGACACTTA+TGG - chr1.3:69514424-69514443 MS.gene49079:CDS 25.0%
!! AGTTATACTTTTCCTTATCT+CGG + chr1.3:69514361-69514380 None:intergenic 25.0%
!!! AGTTTTGTTTTGAGTTTGAA+TGG - chr1.3:69514165-69514184 MS.gene49079:intron 25.0%
AATCTTGTCTTAAATAGACC+CGG - chr1.3:69514277-69514296 MS.gene49079:intron 30.0%
AATTTCTTGAATCTCCTTGA+TGG - chr1.3:69515468-69515487 MS.gene49079:intron 30.0%
ATCACTATCATCATCGAAAT+TGG - chr1.3:69515200-69515219 MS.gene49079:intron 30.0%
ATGTTAACTCTTTGCATACA+TGG + chr1.3:69514477-69514496 None:intergenic 30.0%
CAAAGTTGAAGAAAGTAATC+AGG + chr1.3:69515108-69515127 None:intergenic 30.0%
CAGTGTCAAGAAAAATTTGT+TGG - chr1.3:69514778-69514797 MS.gene49079:CDS 30.0%
CTGATTACTTTCTTCAACTT+TGG - chr1.3:69515106-69515125 MS.gene49079:intron 30.0%
GATAACTATGCTATCTTTCT+AGG - chr1.3:69514827-69514846 MS.gene49079:CDS 30.0%
GGACAATTGCAACAAATTTA+AGG + chr1.3:69514238-69514257 None:intergenic 30.0%
TAACTAACATAGTGCATGTT+TGG + chr1.3:69515607-69515626 None:intergenic 30.0%
TAAGTTTACCTACCAGTTTA+TGG - chr1.3:69515804-69515823 MS.gene49079:intron 30.0%
TGTTTGGTATCACAAAATCA+CGG - chr1.3:69515509-69515528 MS.gene49079:intron 30.0%
TTAGTTTCTTCAATAGAGAG+AGG - chr1.3:69515624-69515643 MS.gene49079:intron 30.0%
!! TTGAGATTGAGTTGGTTTAA+AGG + chr1.3:69514259-69514278 None:intergenic 30.0%
AACTATGCTATCTTTCTAGG+TGG - chr1.3:69514830-69514849 MS.gene49079:CDS 35.0%
AAGCTTCAGTTTGTAGTTAC+TGG + chr1.3:69515331-69515350 None:intergenic 35.0%
AAGCTTGAAGATGATAGATC+TGG - chr1.3:69515345-69515364 MS.gene49079:CDS 35.0%
ACTATGCTATCTTTCTAGGT+GGG - chr1.3:69514831-69514850 MS.gene49079:CDS 35.0%
AGACAAGATTGAGATTGAGT+TGG + chr1.3:69514267-69514286 None:intergenic 35.0%
AGAGCCTGAATTAAGTAAAG+TGG + chr1.3:69515070-69515089 None:intergenic 35.0%
AGTTTGACCTAGTAATCTCA+AGG + chr1.3:69514403-69514422 None:intergenic 35.0%
ATAGTGCATGTTTGGTATCA+CGG + chr1.3:69515599-69515618 None:intergenic 35.0%
ATGACAATGGAAATAGAAGC+TGG - chr1.3:69513964-69513983 MS.gene49079:CDS 35.0%
ATTCGAGAGAGAGAAGAATA+TGG - chr1.3:69514003-69514022 MS.gene49079:intron 35.0%
GAAATAGAAGCTGGAAGAAA+GGG - chr1.3:69513973-69513992 MS.gene49079:CDS 35.0%
GAGTCCACTTTACTTAATTC+AGG - chr1.3:69515063-69515082 MS.gene49079:intron 35.0%
GCTACACATTTAGTTACTGT+AGG + chr1.3:69514455-69514474 None:intergenic 35.0%
TATGAGTGGAATGAACCTTT+AGG + chr1.3:69514737-69514756 None:intergenic 35.0%
TCAACTCATCTTAGTCCTAA+AGG - chr1.3:69514719-69514738 MS.gene49079:CDS 35.0%
TCTAAAGAATCACCGAGATA+AGG - chr1.3:69514346-69514365 MS.gene49079:CDS 35.0%
TTCGAGAGAGAGAAGAATAT+GGG - chr1.3:69514004-69514023 MS.gene49079:intron 35.0%
TTTACTAAGCAGGTTATGAG+TGG + chr1.3:69514751-69514770 None:intergenic 35.0%
! ATAGCTGACTTCCAAAAGTA+AGG - chr1.3:69515729-69515748 MS.gene49079:intron 35.0%
! GTATGGGTTAATGATGACAA+TGG - chr1.3:69513951-69513970 MS.gene49079:CDS 35.0%
! TAGCTTTTGCAAAATCACGA+TGG + chr1.3:69515539-69515558 None:intergenic 35.0%
!! ACTTTTGGAAGTCAGCTATA+TGG + chr1.3:69515728-69515747 None:intergenic 35.0%
AGAAATTGTCAGTATGTCCC+AGG + chr1.3:69515455-69515474 None:intergenic 40.0%
AGAGAGAGAAGAATATGGGT+GGG - chr1.3:69514008-69514027 MS.gene49079:intron 40.0%
ATCTCATTGTCTGTTCTTCC+TGG + chr1.3:69514877-69514896 None:intergenic 40.0%
ATTCAACTTCATGCCATGCT+TGG - chr1.3:69514671-69514690 MS.gene49079:CDS 40.0%
CAACTTTGGCATTCTGATGT+TGG - chr1.3:69515120-69515139 MS.gene49079:intron 40.0%
CCCATTTAAAGAAACGTGTC+CGG - chr1.3:69514914-69514933 MS.gene49079:intron 40.0%
CCGGACACGTTTCTTTAAAT+GGG + chr1.3:69514917-69514936 None:intergenic 40.0%
CCTGATGAAATAGGATTCCT+GGG - chr1.3:69515435-69515454 MS.gene49079:CDS 40.0%
CTGCAATGCATTTACTAAGC+AGG + chr1.3:69514761-69514780 None:intergenic 40.0%
CTTAGTCACATCTACCATCA+AGG + chr1.3:69515485-69515504 None:intergenic 40.0%
GACAGTGTAACAGAGAAAGA+TGG - chr1.3:69514499-69514518 MS.gene49079:CDS 40.0%
GATGTGACTAAGTGCATGTT+TGG - chr1.3:69515493-69515512 MS.gene49079:intron 40.0%
GGAAATAGAAGCTGGAAGAA+AGG - chr1.3:69513972-69513991 MS.gene49079:CDS 40.0%
GTGTAGAAGGAGAATTAGAC+TGG + chr1.3:69514987-69515006 None:intergenic 40.0%
TCCATGTTTAGAGGGGAAAA+GGG - chr1.3:69515757-69515776 MS.gene49079:intron 40.0%
TGAAGATGTTGACGTGATTC+AGG - chr1.3:69515296-69515315 MS.gene49079:CDS 40.0%
TGAATCACGTCAACATCTTC+AGG + chr1.3:69515297-69515316 None:intergenic 40.0%
TGACCTAGTAATCTCAAGGT+GGG + chr1.3:69514399-69514418 None:intergenic 40.0%
TGACTTCCAAAAGTAAGGTG+AGG - chr1.3:69515734-69515753 MS.gene49079:intron 40.0%
TTAGACTGGACATTCCTATC+AGG + chr1.3:69514973-69514992 None:intergenic 40.0%
TTGACCTAGTAATCTCAAGG+TGG + chr1.3:69514400-69514419 None:intergenic 40.0%
TTTGGAAGTCAGCTATATGG+TGG + chr1.3:69515725-69515744 None:intergenic 40.0%
! GATAGATCTGGTTCAGATTC+AGG - chr1.3:69515357-69515376 MS.gene49079:CDS 40.0%
!! GAGTTGATAATAGAGCAGTG+AGG + chr1.3:69514706-69514725 None:intergenic 40.0%
!! GCTACAAAGTGTTGCTTTGT+AGG - chr1.3:69515555-69515574 MS.gene49079:intron 40.0%
AAGGTGAGGTCCATGTTTAG+AGG - chr1.3:69515748-69515767 MS.gene49079:intron 45.0%
ACGTCAACATCTTCAGGCTT+TGG + chr1.3:69515291-69515310 None:intergenic 45.0%
ACTGGACATTCCTATCAGGA+AGG + chr1.3:69514969-69514988 None:intergenic 45.0%
AGGTGAGGTCCATGTTTAGA+GGG - chr1.3:69515749-69515768 MS.gene49079:intron 45.0%
ATCCATGTCTCCTTCCTGAT+AGG - chr1.3:69514956-69514975 MS.gene49079:intron 45.0%
ATGTTTAGAGGGGAAAAGGG+TGG - chr1.3:69515760-69515779 MS.gene49079:intron 45.0%
CAAGTAGGTCTCCTAAGATG+CGG - chr1.3:69514563-69514582 MS.gene49079:CDS 45.0%
CCCAGGAATCCTATTTCATC+AGG + chr1.3:69515438-69515457 None:intergenic 45.0%
CTGCGTATGCCTGATGAAAT+AGG - chr1.3:69515426-69515445 MS.gene49079:CDS 45.0%
GAAAAGGGTGGACAGAGAAA+TGG - chr1.3:69515772-69515791 MS.gene49079:intron 45.0%
GAGAGAGAAGAATATGGGTG+GGG - chr1.3:69514009-69514028 MS.gene49079:intron 45.0%
GAGAGAGAGAAGAATATGGG+TGG - chr1.3:69514007-69514026 MS.gene49079:intron 45.0%
GATAGTTTATCCACCGAAGC+CGG + chr1.3:69514598-69514617 None:intergenic 45.0%
GCCGGACACGTTTCTTTAAA+TGG + chr1.3:69514918-69514937 None:intergenic 45.0%
GCCTGATGAAATAGGATTCC+TGG - chr1.3:69515434-69515453 MS.gene49079:CDS 45.0%
GTCCATGTTTAGAGGGGAAA+AGG - chr1.3:69515756-69515775 MS.gene49079:intron 45.0%
TAAGATGCGGCAAAAGTTGC+CGG - chr1.3:69514576-69514595 MS.gene49079:CDS 45.0%
TAGAAGCTGGAAGAAAGGGA+AGG - chr1.3:69513977-69513996 MS.gene49079:CDS 45.0%
TGGATAAACTATCTCCGTCC+TGG - chr1.3:69514605-69514624 MS.gene49079:CDS 45.0%
TTCCTATCAGGAAGGAGACA+TGG + chr1.3:69514961-69514980 None:intergenic 45.0%
TTTCATCAGGCATACGCAGT+AGG + chr1.3:69515425-69515444 None:intergenic 45.0%
! ACCCTTTTCCCCTCTAAACA+TGG + chr1.3:69515761-69515780 None:intergenic 45.0%
! ATCGGGTTTGTTCGTGTCTA+GGG - chr1.3:69514309-69514328 MS.gene49079:CDS 45.0%
! CATGGACCTCACCTTACTTT+TGG + chr1.3:69515743-69515762 None:intergenic 45.0%
AGAAGAATATGGGTGGGGTG+GGG - chr1.3:69514014-69514033 MS.gene49079:intron 50.0%
AGAGAAGAATATGGGTGGGG+TGG - chr1.3:69514012-69514031 MS.gene49079:intron 50.0%
GAGAAGAATATGGGTGGGGT+GGG - chr1.3:69514013-69514032 MS.gene49079:intron 50.0%
GCTATAGCAGCTCAACTACC+AGG - chr1.3:69514856-69514875 MS.gene49079:CDS 50.0%
GCTCCCACCTTGAGATTACT+AGG - chr1.3:69514393-69514412 MS.gene49079:CDS 50.0%
GGTGAGGTCCATGTTTAGAG+GGG - chr1.3:69515750-69515769 MS.gene49079:intron 50.0%
GTGTTCAGACGTCTCATTGC+AGG - chr1.3:69515227-69515246 MS.gene49079:intron 50.0%
TGTCTAGGGACGACGAGTTT+GGG - chr1.3:69514323-69514342 MS.gene49079:CDS 50.0%
TTCATGCCATGCTTGGCAAC+AGG - chr1.3:69514678-69514697 MS.gene49079:CDS 50.0%
TTCTCCTTCTACACGCCACA+TGG - chr1.3:69514993-69515012 MS.gene49079:intron 50.0%
TTTGACACACTACTCCTGCG+CGG + chr1.3:69515155-69515174 None:intergenic 50.0%
! CATCGGGTTTGTTCGTGTCT+AGG - chr1.3:69514308-69514327 MS.gene49079:CDS 50.0%
! GGCAACTTTTGCCGCATCTT+AGG + chr1.3:69514577-69514596 None:intergenic 50.0%
! GTTTTTCCCCTAGTGACTGC+CGG + chr1.3:69514936-69514955 None:intergenic 50.0%
!! GCTTTGGTGTCGACACTTTC+AGG + chr1.3:69515275-69515294 None:intergenic 50.0%
AAACCCGATGCTCTACGACC+GGG + chr1.3:69514298-69514317 None:intergenic 55.0%
AAACGTGTCCGGCAGTCACT+AGG - chr1.3:69514925-69514944 MS.gene49079:intron 55.0%
AACGTGTCCGGCAGTCACTA+GGG - chr1.3:69514926-69514945 MS.gene49079:intron 55.0%
AATATGGGTGGGGTGGGGTT+CGG - chr1.3:69514019-69514038 MS.gene49079:intron 55.0%
AATGAGCCACGCTTGATGCC+AGG + chr1.3:69514626-69514645 None:intergenic 55.0%
CAAACCCGATGCTCTACGAC+CGG + chr1.3:69514299-69514318 None:intergenic 55.0%
CAACCCTTGCACTTTCCCAC+TGG + chr1.3:69515020-69515039 None:intergenic 55.0%
CAAGGGTTGAAGCAGAGACG+AGG - chr1.3:69515031-69515050 MS.gene49079:intron 55.0%
CACTTTCCCACTGGACCATG+TGG + chr1.3:69515011-69515030 None:intergenic 55.0%
CTCAAGGTGGGAGCGAACAA+GGG + chr1.3:69514387-69514406 None:intergenic 55.0%
GTGTCTAGGGACGACGAGTT+TGG - chr1.3:69514322-69514341 MS.gene49079:CDS 55.0%
GTTGGAGAGAAATTCCGCGC+AGG - chr1.3:69515138-69515157 MS.gene49079:intron 55.0%
TACACGCCACATGGTCCAGT+GGG - chr1.3:69515002-69515021 MS.gene49079:intron 55.0%
TAGACCCGGTCGTAGAGCAT+CGG - chr1.3:69514291-69514310 MS.gene49079:CDS 55.0%
TCTCAAGGTGGGAGCGAACA+AGG + chr1.3:69514388-69514407 None:intergenic 55.0%
TGGACCATGTGGCGTGTAGA+AGG + chr1.3:69515000-69515019 None:intergenic 55.0%
! GAGGTACCTGTTGCCAAGCA+TGG + chr1.3:69514687-69514706 None:intergenic 55.0%
! GGTCCAGTGGGAAAGTGCAA+GGG - chr1.3:69515014-69515033 MS.gene49079:intron 55.0%
! TGGTCCAGTGGGAAAGTGCA+AGG - chr1.3:69515013-69515032 MS.gene49079:intron 55.0%
ACGTGTCCGGCAGTCACTAG+GGG - chr1.3:69514927-69514946 MS.gene49079:intron 60.0%
AGCAGAGACGAGGCTGTCGT+TGG - chr1.3:69515041-69515060 MS.gene49079:intron 60.0%
AGCCACGCTTGATGCCAGGA+CGG + chr1.3:69514622-69514641 None:intergenic 60.0%
CTACACGCCACATGGTCCAG+TGG - chr1.3:69515001-69515020 MS.gene49079:intron 60.0%
! AGACCCGGTCGTAGAGCATC+GGG - chr1.3:69514292-69514311 MS.gene49079:CDS 60.0%
!! GCAAAAGTTGCCGGCTTCGG+TGG - chr1.3:69514585-69514604 MS.gene49079:CDS 60.0%
!! GCGGCAAAAGTTGCCGGCTT+CGG - chr1.3:69514582-69514601 MS.gene49079:CDS 60.0%
CTCCGTCCTGGCATCAAGCG+TGG - chr1.3:69514617-69514636 MS.gene49079:CDS 65.0%
ATGGGTGGGGTGGGGTTCGG+TGG - chr1.3:69514022-69514041 MS.gene49079:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 69513941 69515832 69513941 ID=MS.gene49079
chr1.3 mRNA 69513941 69515832 69513941 ID=MS.gene49079.t1;Parent=MS.gene49079
chr1.3 exon 69515823 69515832 69515823 ID=MS.gene49079.t1.exon1;Parent=MS.gene49079.t1
chr1.3 CDS 69515823 69515832 69515823 ID=cds.MS.gene49079.t1;Parent=MS.gene49079.t1
chr1.3 exon 69515296 69515479 69515296 ID=MS.gene49079.t1.exon2;Parent=MS.gene49079.t1
chr1.3 CDS 69515296 69515479 69515296 ID=cds.MS.gene49079.t1;Parent=MS.gene49079.t1
chr1.3 exon 69514284 69514924 69514284 ID=MS.gene49079.t1.exon3;Parent=MS.gene49079.t1
chr1.3 CDS 69514284 69514924 69514284 ID=cds.MS.gene49079.t1;Parent=MS.gene49079.t1
chr1.3 exon 69513941 69514005 69513941 ID=MS.gene49079.t1.exon4;Parent=MS.gene49079.t1
chr1.3 CDS 69513941 69514005 69513941 ID=cds.MS.gene49079.t1;Parent=MS.gene49079.t1
Gene Sequence

>MS.gene49079

ATGAGTTATGGTATGGGTTAATGATGACAATGGAAATAGAAGCTGGAAGAAAGGGAAGGAAAATTCGAGAGAGAGAAGAATATGGGTGGGGTGGGGTTCGGTGGTTTTAGTTTATATTTTCATTTTATTTATTTATTTATTTATTTATTTACAAAAACTTAGTACTATTATTCTTATATATATAATCAAAAACGGTGCGTTTCAAAATTAAGTCCTATTGTAAAAGTTTTGTTTTGAGTTTGAATGGTAGAATATAAAAAACAAATCTAACTTTTAGTTATAATTGTGTGATTACCTTAAATTTGTTGCAATTGTCCTTTAAACCAACTCAATCTCAATCTTGTCTTAAATAGACCCGGTCGTAGAGCATCGGGTTTGTTCGTGTCTAGGGACGACGAGTTTGGGTCTAAAGAATCACCGAGATAAGGAAAAGTATAACTCGTCCCTTGTTCGCTCCCACCTTGAGATTACTAGGTCAAACTTTTATATTGATCTGACACTTATGGCATTGCCTACAGTAACTAAATGTGTAGCCATGTATGCAAAGAGTTAACATAAGACAGTGTAACAGAGAAAGATGGATTCTTACAACTTATTAATATAATTTTATGTATGTTTACTACAAGTAGGTCTCCTAAGATGCGGCAAAAGTTGCCGGCTTCGGTGGATAAACTATCTCCGTCCTGGCATCAAGCGTGGCTCATTTACTAATGAAGAAGAAACTACTATTATTCAACTTCATGCCATGCTTGGCAACAGGTACCTCACTGCTCTATTATCAACTCATCTTAGTCCTAAAGGTTCATTCCACTCATAACCTGCTTAGTAAATGCATTGCAGTGTCAAGAAAAATTTGTTGGATCTAACATTCACTTTGCATGTAACTGATAACTATGCTATCTTTCTAGGTGGGCTGCTATAGCAGCTCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATTTAAAGAAACGTGTCCGGCAGTCACTAGGGGAAAAACATCCATGTCTCCTTCCTGATAGGAATGTCCAGTCTAATTCTCCTTCTACACGCCACATGGTCCAGTGGGAAAGTGCAAGGGTTGAAGCAGAGACGAGGCTGTCGTTGGAGTCCACTTTACTTAATTCAGGCTCTACGACTAAAACATACCCTGATTACTTTCTTCAACTTTGGCATTCTGATGTTGGAGAGAAATTCCGCGCAGGAGTAGTGTGTCAAAGCACTGTCTCACAAGCATCATCATCATCACTATCATCATCGAAATTGGAGTCGTGTTCAGACGTCTCATTGCAGGTGAAAAACAACGAAACACAGAGCCTGAAAGTGTCGACACCAAAGCCTGAAGATGTTGACGTGATTCAGGAACAAAAAGCCAGTAACTACAAACTGAAGCTTGAAGATGATAGATCTGGTTCAGATTCAGGAAATTACGAGTTTCTTGATACTTCTGATTCTGCACTGAAGCACCTACTGCGTATGCCTGATGAAATAGGATTCCTGGGACATACTGACAATTTCTTGAATCTCCTTGATGGTAGATGTGACTAAGTGCATGTTTGGTATCACAAAATCACGGTGAGCCATCGTGATTTTGCAAAAGCTACAAAGTGTTGCTTTGTAGGCTTTTTAGCATTTGCAAACCGTGATACCAAACATGCACTATGTTAGTTAGTTTCTTCAATAGAGAGAGGCAAATACTCTGATATATGATAGAATAGTTAGTTTTCTCAGCCTTTTTGTGATATCTTCATTTTTGAAAAATGCATCCACCATATAGCTGACTTCCAAAAGTAAGGTGAGGTCCATGTTTAGAGGGGAAAAGGGTGGACAGAGAAATGGCTAGAGTTTTAAGTTTACCTACCAGTTTATGGATGTAG
Protein sequence

>MS.gene49079.t1

MSYDPVVEHRVCSCLGTTSLGLKNHRDKEKYNSSLVRSHLEITRSNFYIDLTLMALPTVTKCVAMWAAIAAQLPGRTDNEIKNYWNTHLKKRVRQSLGEKHPCLLPDRNVQSNSPSTRHMVQWESARVEAETRLSLESTLLNSGSTTKTYPDYFLQLWHSDVGEKFRAGVVCQSTVSQASSSSLSSSKLESCSDVSLQVKNNETQSLKVSTPKPEDVDVIQEQKASNYKLKLEDDRSGSDSGNYEFLDTSDSALKHLLRMPDEIGFLGHTDNFLNLLDEGKRVDREMARVLSLPTSLWM