AlfalfaGEDB | MS.gene49108

M. sativa cultivar XinJiangDaYe / MS.gene49108

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00564.27 PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49108.t1	RHN81803.1	91.2	979	20	1	1	913	1	979	0.00E+00	1757.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49108.t1	Q84TH9	56.8	900	325	18	25	913	112	958	2.4e-263	909.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49108.t1	A0A396K0B9	91.2	979	20	1	1	913	1	979	0.0e+00	1757.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene49108.t1	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49108.t1	MTR_1g100970	97.318	895	24	0	19	913	5	899	0.0	1803
MS.gene49108.t1	MTR_1g100970	97.528	890	22	0	24	913	90	979	0.0	1798
MS.gene49108.t1	MTR_1g100970	96.662	689	23	0	225	913	3	691	0.0	1377
MS.gene49108.t1	MTR_0022s0430	70.983	641	159	6	9	625	55	692	0.0	906
MS.gene49108.t1	MTR_0022s0430	55.204	221	83	4	693	913	653	857	1.19e-58	216
MS.gene49108.t1	MTR_0022s0430	74.310	580	130	4	62	625	1	577	0.0	874
MS.gene49108.t1	MTR_0022s0430	55.204	221	83	4	693	913	538	742	1.93e-59	217
MS.gene49108.t1	MTR_3g115400	42.730	564	281	12	58	601	139	680	4.46e-137	432
MS.gene49108.t1	MTR_3g115400	45.946	74	39	1	820	892	818	891	1.97e-12	71.6
MS.gene49108.t1	MTR_2g099350	39.469	603	317	15	47	630	167	740	6.99e-119	385

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49108.t1	AT4G24020	56.955	913	303	20	25	913	112	958	0.0	926
MS.gene49108.t1	AT1G64530	64.052	612	195	10	48	638	94	701	0.0	779
MS.gene49108.t1	AT1G64530	58.586	99	38	2	816	913	740	836	4.68e-28	122
MS.gene49108.t1	AT4G24020	54.032	744	254	19	192	913	1	678	0.0	692
MS.gene49108.t1	AT1G64530	62.454	546	181	9	113	638	5	546	0.0	677
MS.gene49108.t1	AT1G64530	58.586	99	38	2	816	913	585	681	4.21e-28	121
MS.gene49108.t1	AT1G76350	43.717	565	278	12	54	604	103	641	2.61e-138	432
MS.gene49108.t1	AT1G76350	35.238	105	51	2	789	892	698	786	2.30e-12	71.6
MS.gene49108.t1	AT1G76350	43.717	565	278	12	54	604	103	641	2.61e-138	432
MS.gene49108.t1	AT1G76350	35.238	105	51	2	789	892	698	786	2.30e-12	71.6

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Find 219 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTCCTATGCCTACA+GGG	0.592526	1.3:+69111576	None:intergenic
AAAACATCATTAGAAGAACA+TGG	0.686020	1.3:-69113642	MS.gene49108:intron
AAAAGATTGAAACTTGAGGT+TGG	0.535106	1.3:-69109480	MS.gene49108:CDS
AAAAGGAATAGAACTAGGAG+TGG	0.652567	1.3:-69110023	MS.gene49108:CDS
AAAATACCTGAGTGAATGGA+TGG	0.576234	1.3:+69111981	None:intergenic
AAAATCAATTGCTAGGAGGA+AGG	0.596853	1.3:-69110115	MS.gene49108:CDS
AAAATGGCCTCAGCTACTGA+AGG	0.579468	1.3:+69109723	None:intergenic
AAACATACATGCACTCCTGA+AGG	0.585860	1.3:+69109394	None:intergenic
AAACCCTCAGAGAGGAAACG+TGG	0.667434	1.3:-69110874	MS.gene49108:CDS
AAAGAAGTGATTAATGGTAA+AGG	0.511717	1.3:-69110077	MS.gene49108:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATTGAAACTTGAGGT+TGG	-	chr1.3:69113509-69113528	MS.gene49108:intron	30.0%
AAATTCAATAACTGAGAAGC+CGG	-	chr1.3:69110239-69110258	MS.gene49108:CDS	30.0%
AATTCATTCTCTTTCATCTG+AGG	+	chr1.3:69112810-69112829	None:intergenic	30.0%
ACTGGATTATGAAAACTTCA+CGG	+	chr1.3:69110129-69110148	None:intergenic	30.0%
ATATCAATGCATTGTTTAGG+AGG	+	chr1.3:69113350-69113369	None:intergenic	30.0%
ATATCGTAGATGCTCATTTA+TGG	-	chr1.3:69111528-69111547	MS.gene49108:CDS	30.0%
ATGTAGCATGTACTTGTATA+AGG	+	chr1.3:69110020-69110039	None:intergenic	30.0%
ATGTATGTTTCAAGATCATC+CGG	-	chr1.3:69113608-69113627	MS.gene49108:intron	30.0%
ATTATTGAAGCAACTGATGA+AGG	-	chr1.3:69111908-69111927	MS.gene49108:intron	30.0%
CACATTTGATATCAAGTACA+TGG	-	chr1.3:69113532-69113551	MS.gene49108:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	69109302	69113709	69109302	ID=MS.gene49108
chr1.3	mRNA	69109302	69113709	69109302	ID=MS.gene49108.t1;Parent=MS.gene49108
chr1.3	exon	69113643	69113709	69113643	ID=MS.gene49108.t1.exon1;Parent=MS.gene49108.t1
chr1.3	CDS	69113643	69113709	69113643	ID=cds.MS.gene49108.t1;Parent=MS.gene49108.t1
chr1.3	exon	69112214	69112779	69112214	ID=MS.gene49108.t1.exon2;Parent=MS.gene49108.t1
chr1.3	CDS	69112214	69112779	69112214	ID=cds.MS.gene49108.t1;Parent=MS.gene49108.t1
chr1.3	exon	69111988	69112035	69111988	ID=MS.gene49108.t1.exon3;Parent=MS.gene49108.t1
chr1.3	CDS	69111988	69112035	69111988	ID=cds.MS.gene49108.t1;Parent=MS.gene49108.t1
chr1.3	exon	69110791	69111697	69110791	ID=MS.gene49108.t1.exon4;Parent=MS.gene49108.t1
chr1.3	CDS	69110791	69111697	69110791	ID=cds.MS.gene49108.t1;Parent=MS.gene49108.t1
chr1.3	exon	69109302	69110455	69109302	ID=MS.gene49108.t1.exon5;Parent=MS.gene49108.t1
chr1.3	CDS	69109302	69110455	69109302	ID=cds.MS.gene49108.t1;Parent=MS.gene49108.t1

Gene Sequence

>MS.gene49108

ATGTCAGAACCTGAAGAAGAAAATCAAGACTTTCCTCCCAAGACAAAAACATCATTAGAAGAACATGGTTGTTCTATGGATTTTGATCTAGATTTAGAAACATCATGGCCTTTGGATCACATGTCCTTTCTCTCTAATAATCCCATGTCACCTTTTTTGTTTTCAAACATCTCTGATCAACCTTCTTCTCCTCTATGGACTTTTACTGATGGAGAAGATGCCAAACTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTATGTTTTGTTTTGTTTAGATTCTTTTTCTGTTGACTTCAGTTTTGAAAGTTTTTTGAATCTTTTGAACTTGCTTAATTAATTCATAGTTGACTGTAACTTGATTTTGATGCAACAAATTTTGCTTTGTTTGATTTTATAATGGAATATGTGAATTTTAGAGTTTATAATTATTTTCCCTTAATGTATAATGAGTTTATGTGTGCCTAATTTTACTTGTGAATGTTGGTGTAGTGAAGAAACATTTTTTAATTAAAAAGAAAAATTATATTAATAACCTACTACAGTATTTGAAGATTAAGTTGATTATATGCGTTGTTAATTATGTAGAAGGACTTTATGTGATTGAAATTGAATTTGTTTTTGTCTCCCTCTTCTAAATTGAACAGCTGAAGTTTCACGGCTTCATGGCTAGAGTTGCCTGGTAATTGCTTTCTTGGGCTTTTACCTTATACAAGTACATGCTACATTTGTTATTATGATTCTTTGAGTATTTATAAGGTTTGAAATTGAAAGTTCTAGATATACTTGTATTTTTGAGCTATTAATATAATAACCGTGAAGTTTTCATAATCCAGTCCAATGTCATGTGGTGCTAAACATGTATTTTGCAGTTTATGTGGAGAGCTGCATTTCTTCTAACTAAAGCTACTGTTTTTCAGGTGATTCAAATTCAATAACTGAGAAGCCGGTGGAGAAAGACGACAACAAAACACTTTTGCCACCCCTTTTGCCACCAATAGAAAATTTGGATGGATATTGTGTAATCAAGGAAAAGATGACACAAGCGCTTCGTTACTTCAAAGAGTGGACTGAACTGAATGTATTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTACTTACAACTTCAGGTCAACCCTTTGTCCTTGATCCGCATAGTAATGGACTCAATCAGTATAGAACGGTTTCCCTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTAGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCTGTACTATTCTAATAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCATGTATTGGTGTGATAGAGTTGATAATGACTTCACTAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTAGAGGTTGAGTTTCTTTTAACTTTGCAATCCATCCTAAGTTTTATGGTTTTCTTATGTTTGGTGATTACAATGTGACGAACTGATATTTATACATTTTATACCAAGTTTTCAATGGCAGAGATTTTGAATAACTATAAACATATTTAGATTCCTCAATGATCTGCTTTTGGTTTCCTTGCAGGCAGTAAATTTGAGGAGCTCAGAGTTTTTGGACCATCCATTCACTCAGGTATTTTTATTTTTAGAGTTTAATGGAGGTACGCAGTCAGTATAAATTTGTTTTGCACTGACAGCCAGTGACAATGATTCACACTTGCAACATAAGCCTATTTGTAACTGCATTTTAAAAATAATTGGAAAATACTGGATTCTCATTGGATGTTGGTGTAAATGCATATCCTGATTTGTTTTTATCATGTATGATGCATCCCAGTCTGTTATATCTAGATAATGTTGTTATTGTTCTATCGCTTACCCCTGGATTCCCACAGATATAACTTGGCAATGCTTTTAAATCAGATTTGCAATGAAGGGCGTCAAAATGCATTATCGGAGATCTTAGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTGTGCATGTCTACAACTGAGGCGGCAGCCTATATCGTAGATGCTCATTTATGGGGTTTCAGAGAAGCATGTGTCGAACATCACTTACAACATGGTCAAGGTGTTGCGGGGAGGGCGTTTTTGTCTCAAAACATGTGCTTCTGCACAAACATTACCAAGTTCTGCAAGACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTGCGGAGTTTTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATTACTGAATTTCATGAACAGAAGACGCTGTTGGGATCCATATTGTCAACAATGAAACAGCATTTTCAGAGTCTTAACATTGCTGCTGGTGTTGAACTCGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACTGATGAAGGCATTCGTCTTAGAACCGAATCTATTCCTATTGCTCAATCTATTAAATCACCACCTAGACCCGATGCCTCACCAAATATGGAGGAGGAGGAGGAGGGAGTACCACAGGATCCATCAGAGGTTCATGGTGAAAATGTAGGCAGAAGTGTTGATCCGATGTCTACCTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGGTACGTTCATACTCTGACATATAGTGTGATGCGATTTTATCTTTATTAATCTGCTGCTAGCTGGAAACATATTCATCCAATATTAACATTTTATAATTCTCTAAGAATACACATGCCTCTACTACAATGAAGTGCATCTTTTGGTTATTTTATCTTTACAAATTTGCTGCTATCTGGAAATATACAATTACCAAAGAATGTATTACGTAATCGAAACATACAAACTGTATTTTTGTAAAAAAAAAAAAAAAAACAGTAGTAGTTTGTTATCTAAGAAACATGAAAGAAAGTAGTAGCTTTAACACAAACTTCTTGGATATATTCTTGTTGTACAGTTTGCCCTACTACAATGAAGCGTATCTGCAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAGATTAACAAGGTTAACCGTTCCCTATCTAAGCTCAAACGTGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCGTTTGATTTGAATTCTCTTGGTAATAATCAACTTCCAATTGTTAGTTCATTTCCTGAGCCTTCTACTCCGAATAAGTCCAGCCAGCAAGGCTCGTTAAGCAATAGGCCGTCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCCTCTAAAGTATCAGAAACAAACATACAGATTGTAATGGAAAATCAATTGCTAGGAGGAAGGAAACATAGTCTTGAGAAAGAAGTGATTAATGGTAAAGGCGTGACTATTCAGGAAATTGGAAAGGACCGAAAAAGGAATAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAACCCTACTTCTCATGGTTCATGCCACGGTAGTCCCCCAATTGAAATTCCAACCATAAAAGATCCGTTCATTCCATCCAACAATGAACAACATGTTGTGTTGAGGGGATCGCCAGAGTCGGGAATGCAGCCGACTAATGCTTTAAACTCTCCAACTTCTCACCGTATGCCCGACAATGTGATAGCAGAACTTCAAGAGCCGTTTGGAGGATTGCTAATAGAGGACGCTGGAAGTTCGAAAGACTTGAGAAATTTGTGCCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTGGCTCCAGAAGCTTGTGGTAACAACTTTCCAGGTTCATCACATCTGGCTCCTCCTAAACAATGCATTGATATCATTAATAATTCAGTGACGCCTTTTGCAGCTAGAAAAGAAATGAAGACTGTAACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAGTTTCCAAAAGATTGAAACTTGAGGTTGGCACATTTGATATCAAGTACATGGACGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGACCTTCAGGAGTGCATGTATGTTTCAAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTGGTGCATGACATAACATCAAATCTTGGAAGCTCCTGTGAGAGTTCAGGGGAGTGA

Protein sequence

>MS.gene49108.t1

MSEPEEENQDFPPKTKTSLEEHGDSNSITEKPVEKDDNKTLLPPLLPPIENLDGYCVIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSNKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEFLDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEAAAYIVDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMCFCTNITKFCKTDYPLVHYALMFGLTSCFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKTLLGSILSTMKQHFQSLNIAAGVELEENGSIEIIEATDEGIRLRTESIPIAQSIKSPPRPDASPNMEEEEEGVPQDPSEVHGENVGRSVDPMSTLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTPNKSSQQGSLSNRPSEPQMKENEFDASKVSETNIQIVMENQLLGGRKHSLEKEVINGKGVTIQEIGKDRKRNRTRSGSSEDSTNPTSHGSCHGSPPIEIPTIKDPFIPSNNEQHVVLRGSPESGMQPTNALNSPTSHRMPDNVIAELQEPFGGLLIEDAGSSKDLRNLCPSVAEAILEDLAPEACGNNFPGSSHLAPPKQCIDIINNSVTPFAARKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSKRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVHDITSNLGSSCESSGE