AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49372

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49372.t1 MTR_2g099990 53.665 382 133 11 6 363 1 362 7.97e-116 347
MS.gene49372.t1 MTR_8g017210 55.000 360 98 8 6 327 18 351 6.29e-115 347
MS.gene49372.t1 MTR_1g016010 56.856 299 94 6 35 333 37 300 2.71e-112 338
MS.gene49372.t1 MTR_4g059870 55.769 312 118 7 36 327 34 345 1.63e-108 330
MS.gene49372.t1 MTR_2g093960 75.956 183 44 0 40 222 32 214 2.84e-106 321
MS.gene49372.t1 MTR_1g094115 63.774 265 66 8 40 295 47 290 2.19e-104 320
MS.gene49372.t1 MTR_1g112270 59.533 257 87 5 43 283 47 302 3.52e-102 315
MS.gene49372.t1 MTR_2g090745 46.798 406 140 15 50 385 17 416 1.28e-98 302
MS.gene49372.t1 MTR_1g112270 57.090 268 87 6 43 283 47 313 2.08e-98 306
MS.gene49372.t1 MTR_2g099990 55.591 313 106 10 64 363 1 293 2.54e-98 300
MS.gene49372.t1 MTR_1g094115 57.358 265 66 9 40 295 47 273 7.79e-87 275
MS.gene49372.t1 MTR_2g017720 73.387 124 27 2 42 165 315 432 5.02e-54 186
MS.gene49372.t1 MTR_3g102000 66.000 100 26 3 67 162 36 131 1.04e-36 134
MS.gene49372.t1 MTR_5g030560 78.000 50 11 0 45 94 11 60 1.63e-21 88.6
MS.gene49372.t1 MTR_1g093095 35.172 145 80 5 61 193 107 249 3.60e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49372.t1 AT4G02670 51.378 399 116 11 23 404 38 375 6.55e-122 360
MS.gene49372.t1 AT4G02670 51.378 399 116 11 23 404 36 373 7.38e-122 360
MS.gene49372.t1 AT3G50700 50.119 421 167 10 2 386 1 414 1.54e-113 341
MS.gene49372.t1 AT1G55110 72.603 219 52 4 6 216 21 239 4.24e-110 332
MS.gene49372.t1 AT1G55110 72.603 219 52 4 6 216 21 239 4.24e-110 332
MS.gene49372.t1 AT1G55110 72.603 219 52 4 6 216 21 239 4.24e-110 332
MS.gene49372.t1 AT5G66730 49.246 398 126 8 2 332 1 389 2.37e-107 327
MS.gene49372.t1 AT5G03150 75.758 198 41 2 39 235 52 243 2.38e-107 327
MS.gene49372.t1 AT3G45260 82.249 169 30 0 39 207 38 206 1.78e-106 323
MS.gene49372.t1 AT3G45260 82.249 169 30 0 39 207 38 206 1.78e-106 323
MS.gene49372.t1 AT3G13810 85.629 167 24 0 37 203 48 214 4.95e-106 323
MS.gene49372.t1 AT1G03840 82.759 174 29 1 33 206 34 206 5.10e-106 323
MS.gene49372.t1 AT3G13810 85.629 167 24 0 37 203 67 233 5.49e-106 323
MS.gene49372.t1 AT3G13810 85.629 167 24 0 37 203 67 233 5.49e-106 323
MS.gene49372.t1 AT3G13810 85.629 167 24 0 37 203 62 228 7.08e-106 323
MS.gene49372.t1 AT5G44160 76.720 189 39 2 19 207 20 203 2.02e-103 315
MS.gene49372.t1 AT1G14580 79.429 175 30 2 34 203 42 215 2.32e-103 315
MS.gene49372.t1 AT1G14580 79.429 175 30 2 34 203 42 215 2.32e-103 315
MS.gene49372.t1 AT1G14580 79.429 175 30 2 34 203 56 229 4.55e-103 315
MS.gene49372.t1 AT5G60470 72.396 192 44 1 40 222 44 235 1.40e-102 313
MS.gene49372.t1 AT5G60470 72.396 192 44 1 40 222 40 231 1.82e-102 313
MS.gene49372.t1 AT2G02080 78.161 174 33 2 34 203 44 216 2.32e-102 314
MS.gene49372.t1 AT2G02080 78.161 174 33 2 34 203 44 216 2.32e-102 314
MS.gene49372.t1 AT2G02080 78.161 174 33 2 34 203 44 216 2.32e-102 314
MS.gene49372.t1 AT2G02080 78.161 174 33 2 34 203 44 216 2.32e-102 314
MS.gene49372.t1 AT1G03840 81.609 174 29 2 33 206 34 204 3.54e-102 313
MS.gene49372.t1 AT2G02070 84.146 164 25 1 40 203 52 214 2.87e-101 314
MS.gene49372.t1 AT2G02070 84.146 164 25 1 40 203 52 214 2.87e-101 314
MS.gene49372.t1 AT3G13810 87.582 153 19 0 51 203 68 220 1.35e-98 304
MS.gene49372.t1 AT3G13810 87.582 153 19 0 51 203 82 234 1.59e-98 305
MS.gene49372.t1 AT5G60470 71.271 181 43 1 51 222 46 226 1.43e-94 292
MS.gene49372.t1 AT5G44160 54.369 309 102 11 50 325 8 310 1.75e-94 291
MS.gene49372.t1 AT2G02080 80.714 140 26 1 64 203 1 139 2.49e-86 271
MS.gene49372.t1 AT2G02080 80.714 140 26 1 64 203 1 139 2.49e-86 271
MS.gene49372.t1 AT2G01940 62.573 171 59 2 27 196 35 201 3.29e-75 242
MS.gene49372.t1 AT1G68130 64.103 156 55 1 40 194 41 196 5.78e-73 235
MS.gene49372.t1 AT1G25250 63.694 157 55 2 40 194 33 189 4.65e-72 232
MS.gene49372.t1 AT2G01940 61.628 172 60 3 27 196 35 202 1.48e-71 233
MS.gene49372.t1 AT1G25250 64.626 147 50 2 50 194 20 166 1.24e-68 222
MS.gene49372.t1 AT2G01940 62.500 112 41 1 86 196 1 112 7.09e-46 162
MS.gene49372.t1 AT1G68130 61.818 110 41 1 86 194 1 110 2.67e-45 160
MS.gene49372.t1 AT1G25250 60.360 111 42 2 86 194 1 111 1.24e-43 155
MS.gene49372.t1 AT5G22890 35.542 166 92 4 38 190 188 351 5.98e-24 103
MS.gene49372.t1 AT1G34370 35.443 158 89 4 49 193 14 171 1.52e-23 100
MS.gene49372.t1 AT1G34370 35.443 158 89 4 49 193 224 381 3.95e-23 102
MS.gene49372.t1 AT1G34370 35.443 158 89 4 49 193 224 381 3.95e-23 102
MS.gene49372.t1 AT1G13290 33.987 153 88 6 61 202 93 243 1.23e-19 89.4
MS.gene49372.t1 AT1G34790 36.000 150 85 5 53 193 129 276 4.77e-19 87.8
MS.gene49372.t1 AT1G08290 35.260 173 91 8 40 193 142 312 6.63e-19 87.8
MS.gene49372.t1 AT3G20880 35.211 142 81 5 61 193 248 387 9.74e-19 88.2
MS.gene49372.t1 AT3G57670 34.694 147 85 5 56 193 204 348 1.58e-18 87.4
MS.gene49372.t1 AT1G51220 33.333 147 87 5 56 193 165 309 3.86e-18 85.5

Find 121 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGACGGTTGCTGCTTTC+TGG 0.054131 1.1:+53637761 None:intergenic
GAGAGGTTGGTGTGAAAATT+TGG 0.168178 1.1:+53637916 None:intergenic
GATGATGTCATTATGCTCTT+AGG 0.239488 1.1:+53637859 None:intergenic
TGATGTGGCTTTGTTGGTTT+TGG 0.242334 1.1:+53638016 None:intergenic
AGGCTGTTGTGAGGAATTTA+TGG 0.247540 1.1:+53641091 None:intergenic
GTGTGAAAATTTGGAGATTC+AGG 0.253132 1.1:+53637925 None:intergenic
TTGTGGTGGTGATGGCTAAT+TGG 0.260156 1.1:+53638094 None:intergenic
TGGAAACTTTGTTGTTGATT+TGG 0.272173 1.1:+53638036 None:intergenic
AGGAAGAGAGATTGGACTAA+TGG 0.292623 1.1:+53638063 None:intergenic
GGAAACTTTGTTGTTGATTT+GGG 0.314994 1.1:+53638037 None:intergenic
TTTGTTGCTAATAGTGTCTT+TGG 0.317163 1.1:+53640681 None:intergenic
TTCTGAGAAAGAAGTGGAAT+TGG 0.320642 1.1:+53641157 None:intergenic
CCCAGGTGATGTGGCTTTGT+TGG 0.325238 1.1:+53638010 None:intergenic
TTGGGAAGAGGAAGAGAGAT+TGG 0.331874 1.1:+53638055 None:intergenic
CAGCTCAGCATTGACCAGTT+TGG 0.334289 1.1:-53637703 MS.gene49372:CDS
GAGACCGTCTTCGTTCTTTC+CGG 0.338812 1.1:+53637621 None:intergenic
TGTGGTGGTGATGGCTAATT+GGG 0.345186 1.1:+53638095 None:intergenic
GACTAATGGGTTTGTGTTTG+TGG 0.349306 1.1:+53638077 None:intergenic
CAGTCACAACAAGCAGGTTT+TGG 0.351112 1.1:-53637460 MS.gene49372:CDS
TGTGGTGGAGAGTATTATTA+AGG 0.363128 1.1:+53637956 None:intergenic
AGGGCTCTTGGAGATCTTAC+AGG 0.369272 1.1:-53640486 MS.gene49372:CDS
CTAGGGTTAGGGTTTGGTTG+AGG 0.381467 1.1:+53637982 None:intergenic
GGAAGAGAGATTGGACTAAT+GGG 0.383729 1.1:+53638064 None:intergenic
ATGATGTCATTATGCTCTTA+GGG 0.385655 1.1:+53637860 None:intergenic
TTATTAAGGTTGCTAGGGTT+AGG 0.389295 1.1:+53637970 None:intergenic
CTTACCAACGGCGGAGGAAA+TGG 0.400342 1.1:-53637580 MS.gene49372:CDS
TCTATGCTGTTCATTCTGAT+TGG 0.408547 1.1:-53640398 MS.gene49372:CDS
TATTAGTTACCTGGGTTACC+AGG 0.411020 1.1:+53641041 None:intergenic
TTTGATGAGGTTGGTGTTGG+TGG 0.413230 1.1:+53637503 None:intergenic
ACCAACAAAGCCACATCACC+TGG 0.418644 1.1:-53638011 MS.gene49372:CDS
GGGTTAGGGTTTGGTTGAGG+TGG 0.424046 1.1:+53637985 None:intergenic
TATTAAGGTTGCTAGGGTTA+GGG 0.426783 1.1:+53637971 None:intergenic
CATAACCCTTCAAGGGCTCT+TGG 0.427551 1.1:-53640498 MS.gene49372:CDS
CATTTCCTCCGCCGTTGGTA+AGG 0.428942 1.1:+53637581 None:intergenic
GGTTAGGGTTTGGTTGAGGT+GGG 0.430124 1.1:+53637986 None:intergenic
AAAGCTATCACTTCAGCATC+AGG 0.433390 1.1:+53640708 None:intergenic
GGTCTCACGAGGGACTTTCT+TGG 0.435384 1.1:-53637604 MS.gene49372:CDS
TAGAGGAGGAGAAGAGAGGT+TGG 0.446268 1.1:+53637903 None:intergenic
TTCCTTTGCTTCAACTTCCA+TGG 0.449693 1.1:+53640579 None:intergenic
AGAGTATTATTAAGGTTGCT+AGG 0.450934 1.1:+53637964 None:intergenic
TTTGTTGTTGATTTGGGAAG+AGG 0.451023 1.1:+53638043 None:intergenic
GTTTGGTTGAGGTGGGTCCC+AGG 0.454878 1.1:+53637993 None:intergenic
GTTTGTGTTTGTGGTGGTGA+TGG 0.463157 1.1:+53638086 None:intergenic
AGGTTGCTAGGGTTAGGGTT+TGG 0.463790 1.1:+53637976 None:intergenic
GGGTTTGTGTGACGAAGAAA+TGG 0.465238 1.1:+53637880 None:intergenic
GTGTTCATCATAACCCTTCA+AGG 0.465914 1.1:-53640506 MS.gene49372:CDS
TTTGCTTCAACTTCCATGGT+AGG 0.474534 1.1:+53640583 None:intergenic
GCTGAGTCACTGATCCAAAC+TGG 0.482248 1.1:+53637689 None:intergenic
AAGGATATGCTAACATTCAC+AGG 0.488242 1.1:-53637538 MS.gene49372:CDS
GAGATTCAGGCTTGATGTTG+TGG 0.492741 1.1:+53637938 None:intergenic
AGGAAATGGTGGTGAGTCCT+TGG 0.504475 1.1:-53637566 MS.gene49372:CDS
TTTATATTCTCTAGTACCAC+AGG 0.507908 1.1:+53640359 None:intergenic
GAGTATTATTAAGGTTGCTA+GGG 0.512977 1.1:+53637965 None:intergenic
TGTTTCTTCTGAGAAAGAAG+TGG 0.516927 1.1:+53641151 None:intergenic
GTGGAATTGGACATTAGTGC+AGG 0.522525 1.1:+53641170 None:intergenic
GTGATGTTGGCTGCCTGTGA+TGG 0.522742 1.1:+53637732 None:intergenic
AACATGAGAGGCTGCCTCAC+CGG 0.528047 1.1:-53637640 MS.gene49372:CDS
GTGTGTGAGATCTGCAACAA+GGG 0.528425 1.1:-53640651 MS.gene49372:CDS
GAGGTGGGTCCCAGGTGATG+TGG 0.529471 1.1:+53638001 None:intergenic
GTCGGTGCCACCGCCATCAC+AGG 0.531410 1.1:-53637745 MS.gene49372:CDS
CTTGGCCTTACCAACGGCGG+AGG 0.533245 1.1:-53637586 MS.gene49372:CDS
AACAACTGTTCCTGAGTCGT+GGG 0.538679 1.1:-53637425 MS.gene49372:CDS
AATTTATGGTTGAAACTAAG+TGG 0.539157 1.1:+53641105 None:intergenic
ACCACCATTTCCTCCGCCGT+TGG 0.540479 1.1:+53637576 None:intergenic
GTCCTCTCCTATGTAGCTGT+AGG 0.540553 1.1:+53640610 None:intergenic
ATGGTAGAGGAGGAGAAGAG+AGG 0.543866 1.1:+53637899 None:intergenic
TGACGAAGAAATGGTAGAGG+AGG 0.549887 1.1:+53637889 None:intergenic
GACTTTCTTGGCCTTACCAA+CGG 0.550956 1.1:-53637592 MS.gene49372:CDS
CAACAACTGTTCCTGAGTCG+TGG 0.554359 1.1:-53637426 MS.gene49372:CDS
ATCAAAACCTACAGCTACAT+AGG 0.556033 1.1:-53640617 MS.gene49372:CDS
AGATCTCCAAGAGCCCTTGA+AGG 0.557730 1.1:+53640492 None:intergenic
TGAGCTGAGAGGTGTGATGT+TGG 0.562319 1.1:+53637719 None:intergenic
TGCTGTGTGCTGACGTGGAA+GGG 0.562720 1.1:+53637835 None:intergenic
TTGGCTGCCTGTGATGGCGG+TGG 0.566128 1.1:+53637738 None:intergenic
TAATGGGTTTGTGTTTGTGG+TGG 0.568535 1.1:+53638080 None:intergenic
TAGCATATCCTTTACATCCA+AGG 0.571843 1.1:+53637549 None:intergenic
AGAAGCCTCCCTGGTAACCC+AGG 0.574987 1.1:-53641050 MS.gene49372:intron
TGATGAACACATGAAGGCTC+AGG 0.575160 1.1:+53640519 None:intergenic
AAGGTTGCTGTGTGCTGACG+TGG 0.575946 1.1:+53637830 None:intergenic
TGTGATGGCGGTGGCACCGA+CGG 0.576064 1.1:+53637747 None:intergenic
AGAGAATATAAATGTGATTG+TGG 0.579986 1.1:-53640348 MS.gene49372:CDS
TACCATGGAAGTTGAAGCAA+AGG 0.582854 1.1:-53640581 MS.gene49372:CDS
TGCTGAAAGGTGTGGTGACA+TGG 0.583375 1.1:+53637795 None:intergenic
AGAACGAAGACGGTCTCACG+AGG 0.584329 1.1:-53637615 MS.gene49372:CDS
GTGTGGTGACATGGCAGCAG+TGG 0.584847 1.1:+53637804 None:intergenic
TTGCTGTGTGCTGACGTGGA+AGG 0.586433 1.1:+53637834 None:intergenic
TGGTGAGTCCTTGGATGTAA+AGG 0.590221 1.1:-53637557 MS.gene49372:CDS
GTTGTTAATGTAGTGATCAA+CGG 0.595265 1.1:+53637660 None:intergenic
GGGTTATGATGAACACATGA+AGG 0.597360 1.1:+53640513 None:intergenic
GATCTCCAAGAGCCCTTGAA+GGG 0.598968 1.1:+53640493 None:intergenic
GTGTGACGAAGAAATGGTAG+AGG 0.601234 1.1:+53637886 None:intergenic
GACATGGCAGCAGTGGAAGA+AGG 0.611386 1.1:+53637811 None:intergenic
AAGTCACAGTCACAACAAGC+AGG 0.612011 1.1:-53637466 MS.gene49372:CDS
ATTAGTTACCTGGGTTACCA+GGG 0.616252 1.1:+53641042 None:intergenic
GGAGAGGACATAACCTACCA+TGG 0.621627 1.1:-53640596 MS.gene49372:CDS
CGTCTTCGTTCTTTCCGGTG+AGG 0.625760 1.1:+53637626 None:intergenic
TGTTCATCATAACCCTTCAA+GGG 0.626799 1.1:-53640505 MS.gene49372:CDS
ATGTTGGCTGCCTGTGATGG+CGG 0.628490 1.1:+53637735 None:intergenic
CTCCAGAAAGCAGCAACCGT+CGG 0.630036 1.1:-53637763 MS.gene49372:CDS
ATTCAGGCTTGATGTTGTGG+TGG 0.630169 1.1:+53637941 None:intergenic
CACTACATTAACAACATGAG+AGG 0.631695 1.1:-53637652 MS.gene49372:CDS
ACCAACGGCGGAGGAAATGG+TGG 0.634537 1.1:-53637577 MS.gene49372:CDS
GGAGAAGTGCAGTTGCTGAA+AGG 0.641527 1.1:+53637782 None:intergenic
AAACATTATAGTAGAAAACA+TGG 0.647572 1.1:-53640456 MS.gene49372:CDS
AGTTACCTGGGTTACCAGGG+AGG 0.652361 1.1:+53641045 None:intergenic
ACAACTGTTCCTGAGTCGTG+GGG 0.654552 1.1:-53637424 MS.gene49372:CDS
AGGATATGCTAACATTCACA+GGG 0.658162 1.1:-53637537 MS.gene49372:CDS
CCAACAAAGCCACATCACCT+GGG 0.660119 1.1:-53638010 MS.gene49372:CDS
TGGAATTGGACATTAGTGCA+GGG 0.664460 1.1:+53641171 None:intergenic
AACCTACAGCTACATAGGAG+AGG 0.665795 1.1:-53640612 MS.gene49372:CDS
CTGGTCAATGCTGAGCTGAG+AGG 0.669761 1.1:+53637708 None:intergenic
TGTGTGTGAGATCTGCAACA+AGG 0.672147 1.1:-53640652 MS.gene49372:CDS
GAACGAAGACGGTCTCACGA+GGG 0.672722 1.1:-53637614 MS.gene49372:CDS
CTCACCGGAAAGAACGAAGA+CGG 0.675316 1.1:-53637625 MS.gene49372:CDS
CAACTGTTCCTGAGTCGTGG+GGG 0.675581 1.1:-53637423 MS.gene49372:CDS
GAAGCAAAGGAACAACAAAG+AGG 0.688495 1.1:-53640568 MS.gene49372:CDS
TTTCTTGGCCTTACCAACGG+CGG 0.703626 1.1:-53637589 MS.gene49372:CDS
AAAGCTCACTCTAAAACCTG+TGG 0.713942 1.1:-53640375 MS.gene49372:CDS
AGTGCAGTTGCTGAAAGGTG+TGG 0.715797 1.1:+53637787 None:intergenic
GATATGCTAACATTCACAGG+GGG 0.759370 1.1:-53637535 MS.gene49372:CDS
GGATATGCTAACATTCACAG+GGG 0.776190 1.1:-53637536 MS.gene49372:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAATATTATGTTGA+AGG + chr1.1:53639543-53639562 None:intergenic 10.0%
!! TAAAAATTCATAAATGAATT+GGG - chr1.1:53639889-53639908 MS.gene49372:intron 10.0%
!! TTAAAAATTCATAAATGAAT+TGG - chr1.1:53639888-53639907 MS.gene49372:intron 10.0%
!! AAAAGAATAATTATGAAAAC+AGG + chr1.1:53638713-53638732 None:intergenic 15.0%
!! ATAGAAACATAAGAAAAAAA+TGG + chr1.1:53638376-53638395 None:intergenic 15.0%
!! ATTTATAACATGTTAAATTG+TGG - chr1.1:53637591-53637610 MS.gene49372:CDS 15.0%
!! TATTCTAAATGTAATTACTA+GGG + chr1.1:53640071-53640090 None:intergenic 15.0%
!! TGGATTAATTTAATAAAACA+TGG + chr1.1:53638356-53638375 None:intergenic 15.0%
!! TTATTCTAAATGTAATTACT+AGG + chr1.1:53640072-53640091 None:intergenic 15.0%
!!! AACAATAAATAAACCTTTTT+AGG - chr1.1:53640098-53640117 MS.gene49372:intron 15.0%
!!! ACAATAAATAAACCTTTTTA+GGG - chr1.1:53640099-53640118 MS.gene49372:intron 15.0%
!!! CAAATCATAATTTTAAATTG+CGG - chr1.1:53638423-53638442 MS.gene49372:intron 15.0%
!!! TCATTTATGAATTTTTAACA+TGG + chr1.1:53639886-53639905 None:intergenic 15.0%
!!! TCTTTAAAACATTTATATTG+CGG + chr1.1:53638467-53638486 None:intergenic 15.0%
!! AAACATTATAGTAGAAAACA+TGG - chr1.1:53638134-53638153 MS.gene49372:CDS 20.0%
!! ATTTAATCTCTACCAAATTA+TGG + chr1.1:53638617-53638636 None:intergenic 20.0%
!! TAACTAAATAAATAACACCA+TGG - chr1.1:53640306-53640325 MS.gene49372:intron 20.0%
!! TAACTAATTATTAGTTACCT+GGG + chr1.1:53637560-53637579 None:intergenic 20.0%
!! TATACTAAACAATTGAACTA+AGG + chr1.1:53637815-53637834 None:intergenic 20.0%
!! TCTTATAGTAATTATGATGA+TGG + chr1.1:53639504-53639523 None:intergenic 20.0%
!! TTAACTAATTATTAGTTACC+TGG + chr1.1:53637561-53637580 None:intergenic 20.0%
!! TTAGTTCAATTGTTTAGTAT+AGG - chr1.1:53637814-53637833 MS.gene49372:CDS 20.0%
!!! AATGAATTTGATTTTGAGAA+TGG + chr1.1:53639815-53639834 None:intergenic 20.0%
!!! TGTTTTAAAGATTTGTGTAA+CGG - chr1.1:53638476-53638495 MS.gene49372:intron 20.0%
! AACATAATATATGTCCCAAT+TGG - chr1.1:53639637-53639656 MS.gene49372:intron 25.0%
! AAGTTCAGAGAAAAATACTA+TGG + chr1.1:53639323-53639342 None:intergenic 25.0%
! AATTATGATTGGATAAATGC+AGG - chr1.1:53640003-53640022 MS.gene49372:intron 25.0%
! AATTTATGGTTGAAACTAAG+TGG + chr1.1:53637488-53637507 None:intergenic 25.0%
! AGAGAATATAAATGTGATTG+TGG - chr1.1:53638242-53638261 MS.gene49372:intron 25.0%
! ATAAAAAAGAGCCTCTAATA+TGG + chr1.1:53640287-53640306 None:intergenic 25.0%
! ATATTATGTTGAAGGATTGT+TGG + chr1.1:53639535-53639554 None:intergenic 25.0%
! ATGCAGGATAATTTCAATTT+AGG - chr1.1:53640019-53640038 MS.gene49372:intron 25.0%
! CAGTAGTAGATAAAAACAAA+AGG + chr1.1:53638946-53638965 None:intergenic 25.0%
! CCTCAAAATCCTTTATATTA+TGG - chr1.1:53637651-53637670 MS.gene49372:CDS 25.0%
! CTTTCATGAAACAATTTCAA+GGG + chr1.1:53638780-53638799 None:intergenic 25.0%
! TAGATGACTCAAATTATGAT+TGG - chr1.1:53639992-53640011 MS.gene49372:intron 25.0%
! TATACACTCTTATGTTGATA+TGG - chr1.1:53639162-53639181 MS.gene49372:intron 25.0%
!! CCATAATATAAAGGATTTTG+AGG + chr1.1:53637654-53637673 None:intergenic 25.0%
!! TGTTTTCTGAATCCTAAAAA+AGG - chr1.1:53638871-53638890 MS.gene49372:intron 25.0%
!! TTACATGTGATTTTAAACTG+CGG + chr1.1:53637700-53637719 None:intergenic 25.0%
!! TTCCAATTTTAAATGTGTCA+GGG - chr1.1:53639098-53639117 MS.gene49372:intron 25.0%
!! TTTAGGTTAATTTGGTTTAG+AGG - chr1.1:53640166-53640185 MS.gene49372:intron 25.0%
!! TTTCCAATTTTAAATGTGTC+AGG - chr1.1:53639097-53639116 MS.gene49372:intron 25.0%
!!! CTAGACTTTTTAGGTTAATT+TGG - chr1.1:53640158-53640177 MS.gene49372:intron 25.0%
!!! TACTAGTACATTTTAGAGAA+GGG - chr1.1:53640128-53640147 MS.gene49372:intron 25.0%
!!! TATAGTAATTATGATGATGG+TGG + chr1.1:53639501-53639520 None:intergenic 25.0%
AACAATAAGGCAAATGCAAT+CGG + chr1.1:53638511-53638530 None:intergenic 30.0%
AATTATGGTAAATACACCGT+AGG + chr1.1:53638602-53638621 None:intergenic 30.0%
ACGGTGTATTTACCATAATT+TGG - chr1.1:53638602-53638621 MS.gene49372:intron 30.0%
AGTACTATACCTGGAAAAAA+GGG + chr1.1:53638270-53638289 None:intergenic 30.0%
ATAACTTCATTACAGTGGAT+TGG - chr1.1:53639406-53639425 MS.gene49372:intron 30.0%
ATGATGTCATTATGCTCTTA+GGG + chr1.1:53640733-53640752 None:intergenic 30.0%
ATTCTAGTCTCTTTAGCAAT+TGG + chr1.1:53638841-53638860 None:intergenic 30.0%
CCTTGAAATTGTTTCATGAA+AGG - chr1.1:53638778-53638797 MS.gene49372:intron 30.0%
CCTTTCATGAAACAATTTCA+AGG + chr1.1:53638781-53638800 None:intergenic 30.0%
CTTCTATAACTTCATTACAG+TGG - chr1.1:53639401-53639420 MS.gene49372:intron 30.0%
GAAAACATGGTGAGAAAAAA+TGG - chr1.1:53638147-53638166 MS.gene49372:CDS 30.0%
GAGTATTATTAAGGTTGCTA+GGG + chr1.1:53640628-53640647 None:intergenic 30.0%
GGGACATATATTATGTTACA+GGG + chr1.1:53639634-53639653 None:intergenic 30.0%
GTTGTTAATGTAGTGATCAA+CGG + chr1.1:53640933-53640952 None:intergenic 30.0%
TAAAAACACAAGTGACATGT+TGG - chr1.1:53640234-53640253 MS.gene49372:intron 30.0%
TAGTACTATACCTGGAAAAA+AGG + chr1.1:53638271-53638290 None:intergenic 30.0%
TGGGACATATATTATGTTAC+AGG + chr1.1:53639635-53639654 None:intergenic 30.0%
TTGAATCAAGACCATATTAG+AGG - chr1.1:53640273-53640292 MS.gene49372:intron 30.0%
TTGCAGCACAATAAACAATA+AGG + chr1.1:53638524-53638543 None:intergenic 30.0%
TTGCATCATACTTATAACCA+TGG + chr1.1:53640326-53640345 None:intergenic 30.0%
TTTATATTCTCTAGTACCAC+AGG + chr1.1:53638234-53638253 None:intergenic 30.0%
TTTGTTGCTAATAGTGTCTT+TGG + chr1.1:53637912-53637931 None:intergenic 30.0%
! AGAGTATTATTAAGGTTGCT+AGG + chr1.1:53640629-53640648 None:intergenic 30.0%
! AGATAAAAACAAAAGGTGTG+TGG + chr1.1:53638939-53638958 None:intergenic 30.0%
! CTAATATGGTCTTGATTCAA+TGG + chr1.1:53640273-53640292 None:intergenic 30.0%
! TTTTATTGTGTGAAAACTGC+AGG - chr1.1:53640402-53640421 MS.gene49372:CDS 30.0%
! TTTTGCATGCATAAAGCAAA+AGG - chr1.1:53639570-53639589 MS.gene49372:intron 30.0%
!! ATTGCTGTGTTTTGAACAAT+CGG - chr1.1:53639915-53639934 MS.gene49372:intron 30.0%
!! CAGATTTGTTGCAGATTTAT+CGG + chr1.1:53639364-53639383 None:intergenic 30.0%
!! CTACTAGTACATTTTAGAGA+AGG - chr1.1:53640127-53640146 MS.gene49372:intron 30.0%
!! GGAAACTTTGTTGTTGATTT+GGG + chr1.1:53640556-53640575 None:intergenic 30.0%
!! GTCACTTGTGTTTTTATTGA+GGG + chr1.1:53640230-53640249 None:intergenic 30.0%
!! TCACTTGTGTTTTTATTGAG+GGG + chr1.1:53640229-53640248 None:intergenic 30.0%
!! TGGAAACTTTGTTGTTGATT+TGG + chr1.1:53640557-53640576 None:intergenic 30.0%
!! TGTCACTTGTGTTTTTATTG+AGG + chr1.1:53640231-53640250 None:intergenic 30.0%
!!! ACATTCATTTGGCCTTTTTT+AGG + chr1.1:53638886-53638905 None:intergenic 30.0%
!!! ATAGTTTTAGGTTACGATTG+CGG + chr1.1:53638579-53638598 None:intergenic 30.0%
!!! CTTTTTTTCTTGGACTTTTG+AGG + chr1.1:53637522-53637541 None:intergenic 30.0%
AAAAAGGCCAAATGAATGTG+CGG - chr1.1:53638887-53638906 MS.gene49372:intron 35.0%
AAATCATGCATGGGATAAAG+GGG + chr1.1:53639706-53639725 None:intergenic 35.0%
AAGGATATGCTAACATTCAC+AGG - chr1.1:53641052-53641071 MS.gene49372:CDS 35.0%
ACTCTTATGTTGATATGGAG+TGG - chr1.1:53639167-53639186 MS.gene49372:intron 35.0%
AGAACTTCACAAGTCTTCTT+TGG - chr1.1:53639760-53639779 MS.gene49372:intron 35.0%
AGCAGTAATAGTACTATACC+TGG + chr1.1:53638279-53638298 None:intergenic 35.0%
AGGATATGCTAACATTCACA+GGG - chr1.1:53641053-53641072 MS.gene49372:CDS 35.0%
ATCAAAACCTACAGCTACAT+AGG - chr1.1:53637973-53637992 MS.gene49372:CDS 35.0%
CACTACATTAACAACATGAG+AGG - chr1.1:53640938-53640957 MS.gene49372:intron 35.0%
CGTAACCTAAAACTATCCTA+CGG - chr1.1:53638583-53638602 MS.gene49372:intron 35.0%
CTCTTATGTTGATATGGAGT+GGG - chr1.1:53639168-53639187 MS.gene49372:intron 35.0%
GAAATCATGCATGGGATAAA+GGG + chr1.1:53639707-53639726 None:intergenic 35.0%
GATGATGTCATTATGCTCTT+AGG + chr1.1:53640734-53640753 None:intergenic 35.0%
GTGTGAAAATTTGGAGATTC+AGG + chr1.1:53640668-53640687 None:intergenic 35.0%
TAGCATATCCTTTACATCCA+AGG + chr1.1:53641044-53641063 None:intergenic 35.0%
TAGTTGCGGCCATAATATAA+AGG + chr1.1:53637663-53637682 None:intergenic 35.0%
TATGCATGATGCAATTGATG+TGG + chr1.1:53639600-53639619 None:intergenic 35.0%
TATTAAGGTTGCTAGGGTTA+GGG + chr1.1:53640622-53640641 None:intergenic 35.0%
TCTATGCTGTTCATTCTGAT+TGG - chr1.1:53638192-53638211 MS.gene49372:intron 35.0%
TGAAAGGTTGCATGAAATTG+TGG - chr1.1:53638794-53638813 MS.gene49372:intron 35.0%
TGTTCATCATAACCCTTCAA+GGG - chr1.1:53638085-53638104 MS.gene49372:CDS 35.0%
TTATTAAGGTTGCTAGGGTT+AGG + chr1.1:53640623-53640642 None:intergenic 35.0%
TTTGCAACACAACAACAACT+AGG - chr1.1:53638552-53638571 MS.gene49372:intron 35.0%
! ATACACCGTAGGATAGTTTT+AGG + chr1.1:53638591-53638610 None:intergenic 35.0%
! CACCCTGACACATTTAAAAT+TGG + chr1.1:53639103-53639122 None:intergenic 35.0%
! GGTTGAAAGCTAGACTTTTT+AGG - chr1.1:53640149-53640168 MS.gene49372:intron 35.0%
! TGCAGTCTCTAAGAAAATGA+TGG - chr1.1:53639191-53639210 MS.gene49372:intron 35.0%
! TGTTTCTTCTGAGAAAGAAG+TGG + chr1.1:53637442-53637461 None:intergenic 35.0%
! TTCTGAGAAAGAAGTGGAAT+TGG + chr1.1:53637436-53637455 None:intergenic 35.0%
! TTTTGAACAATCGGTCACAT+TGG - chr1.1:53639924-53639943 MS.gene49372:intron 35.0%
!! TGTGGTGGAGAGTATTATTA+AGG + chr1.1:53640637-53640656 None:intergenic 35.0%
!! TTACAGTGGATTGGATTACA+TGG - chr1.1:53639415-53639434 MS.gene49372:intron 35.0%
!! TTTGTTGTTGATTTGGGAAG+AGG + chr1.1:53640550-53640569 None:intergenic 35.0%
!!! AAGCAGGTTTTGGTTTTCTT+GGG - chr1.1:53641140-53641159 MS.gene49372:CDS 35.0%
!!! AGCATCATCATGTTTTGATG+AGG + chr1.1:53641103-53641122 None:intergenic 35.0%
!!! TCATCATGTTTTGATGAGGT+TGG + chr1.1:53641099-53641118 None:intergenic 35.0%
AAAGCTATCACTTCAGCATC+AGG + chr1.1:53637885-53637904 None:intergenic 40.0%
AAGAAAAAAAGAAGCCTCCC+TGG - chr1.1:53637531-53637550 MS.gene49372:CDS 40.0%
AAGGTAAGGGAAATCATGCA+TGG + chr1.1:53639716-53639735 None:intergenic 40.0%
AATCATGCATGGGATAAAGG+GGG + chr1.1:53639705-53639724 None:intergenic 40.0%
AGGAAGAGAGATTGGACTAA+TGG + chr1.1:53640530-53640549 None:intergenic 40.0%
AGGCTGTTGTGAGGAATTTA+TGG + chr1.1:53637502-53637521 None:intergenic 40.0%
AGGTAAGGGAAATCATGCAT+GGG + chr1.1:53639715-53639734 None:intergenic 40.0%
ATTAGTTACCTGGGTTACCA+GGG + chr1.1:53637551-53637570 None:intergenic 40.0%
ATTGTGTGAAAACTGCAGGA+AGG - chr1.1:53640406-53640425 MS.gene49372:CDS 40.0%
GAAGCAAAGGAACAACAAAG+AGG - chr1.1:53638022-53638041 MS.gene49372:CDS 40.0%
GATATGCTAACATTCACAGG+GGG - chr1.1:53641055-53641074 MS.gene49372:CDS 40.0%
GGAAATCATGCATGGGATAA+AGG + chr1.1:53639708-53639727 None:intergenic 40.0%
GGAAGAGAGATTGGACTAAT+GGG + chr1.1:53640529-53640548 None:intergenic 40.0%
GGATATGCTAACATTCACAG+GGG - chr1.1:53641054-53641073 MS.gene49372:CDS 40.0%
GGGTTATGATGAACACATGA+AGG + chr1.1:53638080-53638099 None:intergenic 40.0%
GTGTTCATCATAACCCTTCA+AGG - chr1.1:53638084-53638103 MS.gene49372:CDS 40.0%
TACCATGGAAGTTGAAGCAA+AGG - chr1.1:53638009-53638028 MS.gene49372:CDS 40.0%
TATTAGTTACCTGGGTTACC+AGG + chr1.1:53637552-53637571 None:intergenic 40.0%
TCTGCGACTGTAATTAGTTG+CGG + chr1.1:53637677-53637696 None:intergenic 40.0%
TGGAATTGGACATTAGTGCA+GGG + chr1.1:53637422-53637441 None:intergenic 40.0%
TTAAATTGTGGTCGCAGTTG+CGG - chr1.1:53637603-53637622 MS.gene49372:CDS 40.0%
TTAACTGCCGCACATTCATT+TGG + chr1.1:53638897-53638916 None:intergenic 40.0%
TTCCTTTGCTTCAACTTCCA+TGG + chr1.1:53638014-53638033 None:intergenic 40.0%
TTTGCTTCAACTTCCATGGT+AGG + chr1.1:53638010-53638029 None:intergenic 40.0%
! ACACGGATTAACGTGTCAAT+GGG + chr1.1:53639669-53639688 None:intergenic 40.0%
! CTAGGGATGAACGAGTTTTA+AGG + chr1.1:53640054-53640073 None:intergenic 40.0%
! GATTAACGTGTCAATGGGTT+TGG + chr1.1:53639664-53639683 None:intergenic 40.0%
! TACACGGATTAACGTGTCAA+TGG + chr1.1:53639670-53639689 None:intergenic 40.0%
! TCAATGGGTTTGGACCAATT+GGG + chr1.1:53639654-53639673 None:intergenic 40.0%
! TCCCTTACCTTTTTGCCAAT+GGG - chr1.1:53639725-53639744 MS.gene49372:intron 40.0%
! TTCCCTTACCTTTTTGCCAA+TGG - chr1.1:53639724-53639743 MS.gene49372:intron 40.0%
!! AAAGCTCACTCTAAAACCTG+TGG - chr1.1:53638215-53638234 MS.gene49372:intron 40.0%
!! ATGATGATGGTGGAAGTCTT+GGG + chr1.1:53639491-53639510 None:intergenic 40.0%
!! CTAGTAGAAGCACCCTAAAA+AGG + chr1.1:53640114-53640133 None:intergenic 40.0%
!! GACTAATGGGTTTGTGTTTG+TGG + chr1.1:53640516-53640535 None:intergenic 40.0%
!! GAGAGGTTGGTGTGAAAATT+TGG + chr1.1:53640677-53640696 None:intergenic 40.0%
!! TAATGGGTTTGTGTTTGTGG+TGG + chr1.1:53640513-53640532 None:intergenic 40.0%
!! TATGATGATGGTGGAAGTCT+TGG + chr1.1:53639492-53639511 None:intergenic 40.0%
!!! AGGGAGGCTTCTTTTTTTCT+TGG + chr1.1:53637532-53637551 None:intergenic 40.0%
!!! ATTGTGGTACCCTTTTTTCC+AGG - chr1.1:53638258-53638277 MS.gene49372:intron 40.0%
!!! CAAGCAGGTTTTGGTTTTCT+TGG - chr1.1:53641139-53641158 MS.gene49372:CDS 40.0%
!!! TGATGTGGCTTTGTTGGTTT+TGG + chr1.1:53640577-53640596 None:intergenic 40.0%
!!! TGTTTTGATGAGGTTGGTGT+TGG + chr1.1:53641093-53641112 None:intergenic 40.0%
AACAACTGTTCCTGAGTCGT+GGG - chr1.1:53641165-53641184 MS.gene49372:CDS 45.0%
AACCTACAGCTACATAGGAG+AGG - chr1.1:53637978-53637997 MS.gene49372:CDS 45.0%
AAGTCACAGTCACAACAAGC+AGG - chr1.1:53641124-53641143 MS.gene49372:CDS 45.0%
AATGTGCCCCATTGGCAAAA+AGG + chr1.1:53639735-53639754 None:intergenic 45.0%
ATTCAGGCTTGATGTTGTGG+TGG + chr1.1:53640652-53640671 None:intergenic 45.0%
CCCCATTGGCAAAAAGGTAA+GGG + chr1.1:53639729-53639748 None:intergenic 45.0%
GAGATTCAGGCTTGATGTTG+TGG + chr1.1:53640655-53640674 None:intergenic 45.0%
GGGTTTGTGTGACGAAGAAA+TGG + chr1.1:53640713-53640732 None:intergenic 45.0%
GTGGAATTGGACATTAGTGC+AGG + chr1.1:53637423-53637442 None:intergenic 45.0%
GTGTGACGAAGAAATGGTAG+AGG + chr1.1:53640707-53640726 None:intergenic 45.0%
GTGTGTGAGATCTGCAACAA+GGG - chr1.1:53637939-53637958 MS.gene49372:CDS 45.0%
TGACGAAGAAATGGTAGAGG+AGG + chr1.1:53640704-53640723 None:intergenic 45.0%
TGATGAACACATGAAGGCTC+AGG + chr1.1:53638074-53638093 None:intergenic 45.0%
TGGTGAGTCCTTGGATGTAA+AGG - chr1.1:53641033-53641052 MS.gene49372:intron 45.0%
TGTGTGTGAGATCTGCAACA+AGG - chr1.1:53637938-53637957 MS.gene49372:CDS 45.0%
TTGGGAAGAGGAAGAGAGAT+TGG + chr1.1:53640538-53640557 None:intergenic 45.0%
! CAGTCACAACAAGCAGGTTT+TGG - chr1.1:53641130-53641149 MS.gene49372:CDS 45.0%
! CCCTTACCTTTTTGCCAATG+GGG - chr1.1:53639726-53639745 MS.gene49372:intron 45.0%
! GTCAATGGGTTTGGACCAAT+TGG + chr1.1:53639655-53639674 None:intergenic 45.0%
! GTTTGTGTTTGTGGTGGTGA+TGG + chr1.1:53640507-53640526 None:intergenic 45.0%
!! GACTTTCTTGGCCTTACCAA+CGG - chr1.1:53640998-53641017 MS.gene49372:intron 45.0%
!! TGTGGTGGTGATGGCTAATT+GGG + chr1.1:53640498-53640517 None:intergenic 45.0%
!! TTGTGGTGGTGATGGCTAAT+TGG + chr1.1:53640499-53640518 None:intergenic 45.0%
!! TTTGATGAGGTTGGTGTTGG+TGG + chr1.1:53641090-53641109 None:intergenic 45.0%
ACAACTGTTCCTGAGTCGTG+GGG - chr1.1:53641166-53641185 MS.gene49372:CDS 50.0%
ACCAACAAAGCCACATCACC+TGG - chr1.1:53640579-53640598 MS.gene49372:CDS 50.0%
AGATCTCCAAGAGCCCTTGA+AGG + chr1.1:53638101-53638120 None:intergenic 50.0%
AGGGCTCTTGGAGATCTTAC+AGG - chr1.1:53638104-53638123 MS.gene49372:CDS 50.0%
AGGTTGCTAGGGTTAGGGTT+TGG + chr1.1:53640617-53640636 None:intergenic 50.0%
AGTGCAGTTGCTGAAAGGTG+TGG + chr1.1:53640806-53640825 None:intergenic 50.0%
ATGCATGGGATAAAGGGGGA+GGG + chr1.1:53639701-53639720 None:intergenic 50.0%
ATGGTAGAGGAGGAGAAGAG+AGG + chr1.1:53640694-53640713 None:intergenic 50.0%
CAACAACTGTTCCTGAGTCG+TGG - chr1.1:53641164-53641183 MS.gene49372:CDS 50.0%
CATAACCCTTCAAGGGCTCT+TGG - chr1.1:53638092-53638111 MS.gene49372:CDS 50.0%
CCAACAAAGCCACATCACCT+GGG - chr1.1:53640580-53640599 MS.gene49372:CDS 50.0%
CTCACCGGAAAGAACGAAGA+CGG - chr1.1:53640965-53640984 MS.gene49372:intron 50.0%
GAGACCGTCTTCGTTCTTTC+CGG + chr1.1:53640972-53640991 None:intergenic 50.0%
GATCTCCAAGAGCCCTTGAA+GGG + chr1.1:53638100-53638119 None:intergenic 50.0%
GCCCCATTGGCAAAAAGGTA+AGG + chr1.1:53639730-53639749 None:intergenic 50.0%
GCTGAGTCACTGATCCAAAC+TGG + chr1.1:53640904-53640923 None:intergenic 50.0%
GGAGAGGACATAACCTACCA+TGG - chr1.1:53637994-53638013 MS.gene49372:CDS 50.0%
GTCCTCTCCTATGTAGCTGT+AGG + chr1.1:53637983-53638002 None:intergenic 50.0%
TAGAGGAGGAGAAGAGAGGT+TGG + chr1.1:53640690-53640709 None:intergenic 50.0%
TCTCGTAGAATGTGCCCCAT+TGG + chr1.1:53639743-53639762 None:intergenic 50.0%
! AGGAAATGGTGGTGAGTCCT+TGG - chr1.1:53641024-53641043 MS.gene49372:intron 50.0%
! CTAGGGTTAGGGTTTGGTTG+AGG + chr1.1:53640611-53640630 None:intergenic 50.0%
! GGAGAAGTGCAGTTGCTGAA+AGG + chr1.1:53640811-53640830 None:intergenic 50.0%
! GGTTAGGGTTTGGTTGAGGT+GGG + chr1.1:53640607-53640626 None:intergenic 50.0%
! TGAGCTGAGAGGTGTGATGT+TGG + chr1.1:53640874-53640893 None:intergenic 50.0%
! TGCTGAAAGGTGTGGTGACA+TGG + chr1.1:53640798-53640817 None:intergenic 50.0%
!! CAGCTCAGCATTGACCAGTT+TGG - chr1.1:53640887-53640906 MS.gene49372:intron 50.0%
!! TTTCTTGGCCTTACCAACGG+CGG - chr1.1:53641001-53641020 MS.gene49372:intron 50.0%
!!! GGACTTTTGAGGCTGTTGTG+AGG + chr1.1:53637511-53637530 None:intergenic 50.0%
AACATGAGAGGCTGCCTCAC+CGG - chr1.1:53640950-53640969 MS.gene49372:intron 55.0%
AGAACGAAGACGGTCTCACG+AGG - chr1.1:53640975-53640994 MS.gene49372:intron 55.0%
AGTTACCTGGGTTACCAGGG+AGG + chr1.1:53637548-53637567 None:intergenic 55.0%
CAACTGTTCCTGAGTCGTGG+GGG - chr1.1:53641167-53641186 MS.gene49372:CDS 55.0%
CATGCATGGGATAAAGGGGG+AGG + chr1.1:53639702-53639721 None:intergenic 55.0%
CATTTCCTCCGCCGTTGGTA+AGG + chr1.1:53641012-53641031 None:intergenic 55.0%
CGTCTTCGTTCTTTCCGGTG+AGG + chr1.1:53640967-53640986 None:intergenic 55.0%
CTCCAGAAAGCAGCAACCGT+CGG - chr1.1:53640827-53640846 MS.gene49372:intron 55.0%
CTGGTCAATGCTGAGCTGAG+AGG + chr1.1:53640885-53640904 None:intergenic 55.0%
CTTACCAACGGCGGAGGAAA+TGG - chr1.1:53641010-53641029 MS.gene49372:intron 55.0%
GAACGAAGACGGTCTCACGA+GGG - chr1.1:53640976-53640995 MS.gene49372:intron 55.0%
GACATGGCAGCAGTGGAAGA+AGG + chr1.1:53640782-53640801 None:intergenic 55.0%
GGGGAGGGGACTAATGTACA+CGG + chr1.1:53639686-53639705 None:intergenic 55.0%
GGTCTCACGAGGGACTTTCT+TGG - chr1.1:53640986-53641005 MS.gene49372:intron 55.0%
TAACAGTTCCCCCACGACTC+AGG + chr1.1:53641178-53641197 None:intergenic 55.0%
TGCATGGGATAAAGGGGGAG+GGG + chr1.1:53639700-53639719 None:intergenic 55.0%
! AAGGTTGCTGTGTGCTGACG+TGG + chr1.1:53640763-53640782 None:intergenic 55.0%
! ATGTTGGCTGCCTGTGATGG+CGG + chr1.1:53640858-53640877 None:intergenic 55.0%
! GGGTTAGGGTTTGGTTGAGG+TGG + chr1.1:53640608-53640627 None:intergenic 55.0%
! GTGATGTTGGCTGCCTGTGA+TGG + chr1.1:53640861-53640880 None:intergenic 55.0%
! TGCTGTGTGCTGACGTGGAA+GGG + chr1.1:53640758-53640777 None:intergenic 55.0%
! TTGCTGTGTGCTGACGTGGA+AGG + chr1.1:53640759-53640778 None:intergenic 55.0%
!! CCCAGGTGATGTGGCTTTGT+TGG + chr1.1:53640583-53640602 None:intergenic 55.0%
ACCAACGGCGGAGGAAATGG+TGG - chr1.1:53641013-53641032 MS.gene49372:intron 60.0%
ACCACCATTTCCTCCGCCGT+TGG + chr1.1:53641017-53641036 None:intergenic 60.0%
AGAAGCCTCCCTGGTAACCC+AGG - chr1.1:53637540-53637559 MS.gene49372:CDS 60.0%
GTGTGGTGACATGGCAGCAG+TGG + chr1.1:53640789-53640808 None:intergenic 60.0%
GTTTGGTTGAGGTGGGTCCC+AGG + chr1.1:53640600-53640619 None:intergenic 60.0%
!! CACCGACGGTTGCTGCTTTC+TGG + chr1.1:53640832-53640851 None:intergenic 60.0%
GAGGTGGGTCCCAGGTGATG+TGG + chr1.1:53640592-53640611 None:intergenic 65.0%
!! CTTGGCCTTACCAACGGCGG+AGG - chr1.1:53641004-53641023 MS.gene49372:intron 65.0%
!! TGTGATGGCGGTGGCACCGA+CGG + chr1.1:53640846-53640865 None:intergenic 65.0%
!! TTGGCTGCCTGTGATGGCGG+TGG + chr1.1:53640855-53640874 None:intergenic 65.0%
!! GTCGGTGCCACCGCCATCAC+AGG - chr1.1:53640845-53640864 MS.gene49372:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 53637414 53641198 53637414 ID=MS.gene49372
chr1.1 mRNA 53637414 53641198 53637414 ID=MS.gene49372.t1;Parent=MS.gene49372
chr1.1 exon 53641051 53641198 53641051 ID=MS.gene49372.t1.exon1;Parent=MS.gene49372.t1
chr1.1 CDS 53641051 53641198 53641051 ID=cds.MS.gene49372.t1;Parent=MS.gene49372.t1
chr1.1 exon 53640333 53640732 53640333 ID=MS.gene49372.t1.exon2;Parent=MS.gene49372.t1
chr1.1 CDS 53640333 53640732 53640333 ID=cds.MS.gene49372.t1;Parent=MS.gene49372.t1
chr1.1 exon 53637414 53638188 53637414 ID=MS.gene49372.t1.exon3;Parent=MS.gene49372.t1
chr1.1 CDS 53637414 53638188 53637414 ID=cds.MS.gene49372.t1;Parent=MS.gene49372.t1
Gene Sequence

>MS.gene49372

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAACAGCCTCAAAAGTCCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGGTAACTAATAATTAGTTAAATAGATTTATATTTATAACATGTTAAATTGTGGTCGCAGTTGCGGTTACGCTTACATCTTGTTGCAGAGACCTCAAAATCCTTTATATTATGGCCGCAACTAATTACAGTCGCAGACCGCAGTTTAAAATCACATGTAACAACATATATTAGTATAATATTAATAGTATATAGTATATAGTTTTTTTTTTTTGAAGAAATCAAAATTAGTATATAGTATATAGTATATACACCTTAGTTCAATTGTTTAGTATAGGATTGACATGTTAATTAATTTTGTAATTGATTCTCTTAATTCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCTGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGTATAGTACTATTACTGCTCATAGATATAAATTTCAAGTACACACATAATATTTTCATGTTAATTTCATATATCCATGTTTTATTAAATTAATCCATTTTTTTCTTATGTTTCTATTTTAGATCAATAATAATGTTATAAGTGCAAATCATAATTTTAAATTGCGGTCTGCAGCTACAATTCAGCCGCAATATAAATGTTTTAAAGATTTGTGTAACGGTTTGCAATTCCGATTGCATTTGCCTTATTGTTTATTGTGCTGCAATATCAAAGTTTGCAACACAACAACAACTAGGACCGCAATCGTAACCTAAAACTATCCTACGGTGTATTTACCATAATTTGGTAGAGATTAAATAAATTACTTTTCGTATCAACAAGATTTTAAATTTAGTTTCTTAAACAATGTCTTTAGAACAGTTGTTAGCATGCCTGTTTTCATAATTATTCTTTTTATTAGTATCTTCTAATTACATAAGAATGTATGCTAGATTTTTACCCTTGAAATTGTTTCATGAAAGGTTGCATGAAATTGTGGATACAGCTAATAAATAAGTGTCCAATTGCTAAAGAGACTAGAATTAACTTTAGCTGTTTTCTGAATCCTAAAAAAGGCCAAATGAATGTGCGGCAGTTAACAACAAAAGAAAACACAATCCACACACCTTTTGTTTTTATCTACTACTGTATTATCTGTGACTCAATAGCAATTTTGTTTGTTTTTTTTTAACATCATGATGCATGCACATGCATGTCAGCATGAACAGCATGATGTATACTATTTTTACAACATTATGTGTAAAAAAATAAAATAAAAATTTCCAATTTTAAATGTGTCAGGGTGCTCAATTGTTTTCTAGACTTGATTGTACTCTCTCTACACTATACACTCTTATGTTGATATGGAGTGGGTGCAGTCTCTAAGAAAATGATGGACATCTATTTCTGTCTACTGAAAAAGTAAAAAGAATATAATCAATATAGTTAGAAAATTTGTGATGATTTCTTACTTTTTTCTCAATTTCATTTTTATTGAAAACTCCATAGTATTTTTCTCTGAACTTTTTTCATCATTGTGAAATCCGATAAATCTGCAACAAATCTGATATGCTAAGTTGCTTTCTTCTATAACTTCATTACAGTGGATTGGATTACATGGATTCATTGATCTCAATTGCTTATCTTTGTGTCGTGCATGAGTTCTAGTTTCCCAAGACTTCCACCATCATCATAATTACTATAAGACTATAGTACCAACAATCCTTCAACATAATATTATATAATTTTAATTTTTTGCATGCATAAAGCAAAAGGCTATCCACATCAATTGCATCATGCATATGATCATTTGACCCTGTAACATAATATATGTCCCAATTGGTCCAAACCCATTGACACGTTAATCCGTGTACATTAGTCCCCTCCCCCTTTATCCCATGCATGATTTCCCTTACCTTTTTGCCAATGGGGCACATTCTACGAGAACTTCACAAGTCTTCTTTGGTTATGTACATATGCATGCATGATTCATTTCCATTCTCAAAATCAAATTCATTGACTCGTTTTCTCTCAAAAAAAGTTACAAAAAAAATATATAGAATTTACCATGTTAAAAATTCATAAATGAATTGGGTGTATTGCTGTGTTTTGAACAATCGGTCACATTGGACTCATTTTCGTATGCAAGTTATAATACAGACGTTCGATTAAGATTAGATGACTCAAATTATGATTGGATAAATGCAGGATAATTTCAATTTAGGAAATCATATCCTTAAAACTCGTTCATCCCTAGTAATTACATTTAGAATAAAATACTAACAATAAATAAACCTTTTTAGGGTGCTTCTACTAGTACATTTTAGAGAAGGGTTGAAAGCTAGACTTTTTAGGTTAATTTGGTTTAGAGGTTAATTCAAATTTTTATTACTATTTAACAAATAACATCCCCTCAATAAAAACACAAGTGACATGTTGGTTCATGAAGTTCACCATTGAATCAAGACCATATTAGAGGCTCTTTTTTATAACTAAATAAATAACACCATGGTTATAAGTATGATGCAAGAAAATATATAGTATTTTCTTATACTCTTTTGTGAATTAATACAAAATTTCTTTTGTTTTATTGTGTGAAAACTGCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAACCCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCCTCCTCTACCATTTCTTCGTCACACAAACCCTAAGAGCATAATGACATCATCACCCTTCCACGTCAGCACACAGCAACCTTCTTCCACTGCTGCCATGTCACCACACCTTTCAGCAACTGCACTTCTCCAGAAAGCAGCAACCGTCGGTGCCACCGCCATCACAGGCAGCCAACATCACACCTCTCAGCTCAGCATTGACCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGAAGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACAGGGGGTGTAGAATACCACCAACACCAACCTCATCAAAACATGATGATGCTCAAGTCACAGTCACAACAAGCAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAGTCGTGGGGGAACTGTTAA
Protein sequence

>MS.gene49372.t1

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKSKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSATQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSPPLPFLRHTNPKSIMTSSPFHVSTQQPSSTAAMSPHLSATALLQKAATVGATAITGSQHHTSQLSIDQFGSVTQLNSVDHYINNMRGCLTGKNEDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQAGFGFLGTTTVPESWGNC