AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49374

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49374.t1 MTR_1g071360 91.228 342 27 3 1 341 4 343 0.0 624
MS.gene49374.t1 MTR_1g071360 90.504 337 29 3 1 336 1 335 0.0 610
MS.gene49374.t1 MTR_7g095680 53.736 348 113 9 1 315 4 336 1.14e-105 314
MS.gene49374.t1 MTR_1g102860 48.089 314 115 9 17 311 27 311 1.10e-80 249
MS.gene49374.t1 MTR_3g104550 44.667 300 146 5 17 300 33 328 9.52e-76 238
MS.gene49374.t1 MTR_4g077970 50.455 220 90 3 22 224 4 221 5.60e-68 221
MS.gene49374.t1 MTR_5g029680 51.376 218 83 4 28 225 30 244 4.12e-67 219
MS.gene49374.t1 MTR_1g061170 48.848 217 99 3 17 224 36 249 1.04e-60 201
MS.gene49374.t1 MTR_2g100680 42.786 201 105 2 28 221 29 226 4.10e-53 181
MS.gene49374.t1 MTR_6g043060 44.221 199 100 3 30 221 22 216 2.84e-50 171
MS.gene49374.t1 MTR_8g083100 45.226 199 96 4 31 221 23 216 1.09e-49 173
MS.gene49374.t1 MTR_8g105780 45.366 205 93 4 30 215 22 226 5.34e-47 163
MS.gene49374.t1 MTR_2g100670 42.308 182 98 1 28 202 31 212 8.09e-46 158
MS.gene49374.t1 MTR_8g087540 42.512 207 92 5 30 221 12 206 1.09e-45 160
MS.gene49374.t1 MTR_6g086805 40.000 225 119 4 30 239 11 234 5.78e-45 157
MS.gene49374.t1 MTR_2g100670 42.105 190 99 2 20 202 135 320 9.90e-45 158
MS.gene49374.t1 MTR_5g010680 65.957 94 32 0 28 121 22 115 5.33e-42 149
MS.gene49374.t1 MTR_5g017470 41.530 183 63 2 28 166 7 189 5.86e-41 145
MS.gene49374.t1 MTR_0020s0020 63.830 94 34 0 28 121 31 124 1.29e-40 145
MS.gene49374.t1 MTR_1g100777 63.830 94 34 0 28 121 16 109 8.85e-40 142
MS.gene49374.t1 MTR_3g101870 64.078 103 36 1 28 130 22 123 2.05e-39 143
MS.gene49374.t1 MTR_5g089170 43.275 171 66 3 28 168 23 192 2.40e-38 137
MS.gene49374.t1 MTR_7g091370 45.062 162 65 3 21 158 9 170 1.22e-37 135
MS.gene49374.t1 MTR_2g017890 38.071 197 96 5 30 209 15 202 1.54e-37 138
MS.gene49374.t1 MTR_4g088900 38.764 178 90 4 28 193 31 201 6.40e-33 122
MS.gene49374.t1 MTR_1g061170 40.136 147 76 3 87 224 11 154 8.82e-27 108
MS.gene49374.t1 MTR_5g047190 42.857 91 45 2 38 121 1 91 1.50e-16 74.7
MS.gene49374.t1 MTR_4g045757 55.172 58 26 0 30 87 14 71 1.91e-16 73.6
MS.gene49374.t1 MTR_6g044340 34.532 139 80 4 90 221 22 156 2.25e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49374.t1 AT3G22830 49.254 335 125 8 10 300 41 374 1.28e-94 287
MS.gene49374.t1 AT3G51910 52.281 285 90 8 21 300 20 263 3.31e-85 258
MS.gene49374.t1 AT3G63350 44.343 327 115 9 15 331 13 282 4.65e-78 241
MS.gene49374.t1 AT2G26150 49.309 217 99 1 17 222 31 247 1.21e-70 224
MS.gene49374.t1 AT2G26150 49.309 217 99 1 17 222 31 247 1.21e-70 224
MS.gene49374.t1 AT4G17750 44.922 256 112 3 12 239 31 285 6.33e-65 213
MS.gene49374.t1 AT1G32330 50.971 206 81 1 15 200 22 227 6.74e-65 213
MS.gene49374.t1 AT1G32330 50.971 206 81 1 15 200 22 227 7.62e-65 213
MS.gene49374.t1 AT5G16820 48.246 228 92 4 11 221 16 234 4.51e-64 211
MS.gene49374.t1 AT5G16820 48.246 228 92 4 11 221 16 234 4.51e-64 211
MS.gene49374.t1 AT5G43840 42.254 284 142 7 17 289 6 278 5.74e-64 204
MS.gene49374.t1 AT3G02990 48.325 209 88 3 30 221 23 228 8.59e-61 202
MS.gene49374.t1 AT5G03720 47.317 205 88 3 30 220 55 253 9.79e-56 187
MS.gene49374.t1 AT5G03720 47.317 205 88 3 30 220 55 253 9.79e-56 187
MS.gene49374.t1 AT1G67970 45.755 212 100 3 30 229 19 227 1.17e-53 181
MS.gene49374.t1 AT5G54070 41.709 199 110 3 30 223 71 268 4.56e-51 172
MS.gene49374.t1 AT4G13980 42.500 200 105 2 31 223 24 220 4.39e-50 174
MS.gene49374.t1 AT3G24520 41.451 193 101 2 30 222 17 197 7.27e-45 156
MS.gene49374.t1 AT4G36990 60.000 105 42 0 28 132 12 116 8.75e-41 144
MS.gene49374.t1 AT1G46264 64.356 101 36 0 21 121 25 125 1.66e-39 143
MS.gene49374.t1 AT4G18880 44.385 187 92 2 20 194 5 191 8.28e-39 142
MS.gene49374.t1 AT5G62020 62.766 94 35 0 28 121 21 114 1.76e-38 139
MS.gene49374.t1 AT4G11660 62.626 99 36 1 28 126 57 154 8.74e-38 139
MS.gene49374.t1 AT5G45710 36.449 214 117 3 30 228 13 222 1.76e-37 137
MS.gene49374.t1 AT5G45710 36.449 214 117 3 30 228 13 222 1.76e-37 137
MS.gene49374.t1 AT2G41690 62.766 94 35 0 28 121 38 131 6.75e-36 130
MS.gene49374.t1 AT2G26150 42.657 143 71 1 90 221 49 191 2.98e-31 119
MS.gene49374.t1 AT2G26150 42.657 143 71 1 90 221 49 191 2.98e-31 119
MS.gene49374.t1 AT4G18870 52.809 89 37 2 31 117 14 99 1.86e-23 98.6
MS.gene49374.t1 AT4G18870 46.591 88 47 0 30 117 146 233 2.32e-21 92.8
MS.gene49374.t1 AT1G77570 35.227 88 54 2 31 115 27 114 1.18e-11 62.4

Find 68 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAGAAATTGATCGTTTA+AGG 0.140595 1.1:-53677056 MS.gene49374:CDS
ATTATTGTGTTTGAAGTATC+TGG 0.159629 1.1:+53677407 None:intergenic
GAGTTATGTGATTATGAATT+TGG 0.193060 1.1:-53676736 MS.gene49374:CDS
TTCTGTTCCATGAAATTATA+TGG 0.235121 1.1:+53677484 None:intergenic
AACAAGTCCTTCATTTGGTT+GGG 0.266336 1.1:+53677569 None:intergenic
AACCACTGAGTCAAGAATTT+AGG 0.293001 1.1:-53676483 MS.gene49374:CDS
AGTTATGTGATTATGAATTT+GGG 0.293011 1.1:-53676735 MS.gene49374:CDS
TTTGCAAATTCCCATCTATC+TGG 0.293795 1.1:+53677174 None:intergenic
CCTTCATTTGGTTGGGGTGG+TGG 0.306285 1.1:+53677576 None:intergenic
ACAACAGAAAGAGAAGAAAA+AGG 0.330208 1.1:-53676860 MS.gene49374:CDS
TCTTCTCTTTCTGTTGTAGT+TGG 0.332869 1.1:+53676866 None:intergenic
GAGATGGAACATAGGTTAGA+AGG 0.365971 1.1:-53676958 MS.gene49374:CDS
TGCTTGATGATGAAGGGTTC+TGG 0.373815 1.1:-53676594 MS.gene49374:CDS
TCATTTGGTTGGGGTGGTGG+TGG 0.381814 1.1:+53677579 None:intergenic
ATTTCAACAAGTCCTTCATT+TGG 0.388996 1.1:+53677564 None:intergenic
GTACCAACCATATAATTTCA+TGG 0.396015 1.1:-53677491 MS.gene49374:CDS
TCTTGTGATTCTAGTGCCTC+AGG 0.405629 1.1:+53676631 None:intergenic
TGTATCCCAAACCACAAAAC+TGG 0.420129 1.1:+53677455 None:intergenic
CAACAAGTCCTTCATTTGGT+TGG 0.420416 1.1:+53677568 None:intergenic
CCAACACAACCAACTTCAAT+AGG 0.420869 1.1:+53677084 None:intergenic
CTCGGTGAAAGAAGAATACT+TGG 0.431235 1.1:-53677613 MS.gene49374:CDS
GACATCTATTGAGGAACATA+AGG 0.431334 1.1:-53677128 MS.gene49374:CDS
TCATTGTTATCTTCAGAAGT+TGG 0.432296 1.1:+53676526 None:intergenic
CCTATTGAAGTTGGTTGTGT+TGG 0.439872 1.1:-53677084 MS.gene49374:CDS
TGAATTTGGGGCGTCGGAGT+TGG 0.444553 1.1:-53676722 MS.gene49374:CDS
ATAGATGTCTTTGCCCTCTC+AGG 0.446863 1.1:+53677142 None:intergenic
CCTTCTCAGCCTATTGAAGT+TGG 0.448492 1.1:-53677093 MS.gene49374:CDS
TGGGGTGGTGGTGGAATCGT+TGG 0.458015 1.1:+53677588 None:intergenic
GTATCTGGGAAGGAGATGAT+TGG 0.458621 1.1:+53677422 None:intergenic
ACAAGTCCTTCATTTGGTTG+GGG 0.464149 1.1:+53677570 None:intergenic
GGGGAAAATAATGGATAAAG+AGG 0.470921 1.1:-53676665 MS.gene49374:CDS
AGTCCTTCATTTGGTTGGGG+TGG 0.486652 1.1:+53677573 None:intergenic
GGAACATAGGTTAGAAGGGA+TGG 0.491916 1.1:-53676953 MS.gene49374:CDS
GTTCCATGAAATTATATGGT+TGG 0.492988 1.1:+53677488 None:intergenic
ATGTTTAGTATGAAATTTGA+GGG 0.495224 1.1:-53676562 MS.gene49374:CDS
GCTTGATGATGAAGGGTTCT+GGG 0.499647 1.1:-53676593 MS.gene49374:CDS
AATGTTAGCTATGGAAATGC+AGG 0.499978 1.1:-53676698 MS.gene49374:CDS
TGATTATGAATTTGGGGCGT+CGG 0.500642 1.1:-53676728 MS.gene49374:CDS
TTATTGTGTTTGAAGTATCT+GGG 0.502771 1.1:+53677408 None:intergenic
CAAGGAACTAGACTAGGTAT+TGG 0.504481 1.1:-53676790 MS.gene49374:CDS
AATGTTTAGTATGAAATTTG+AGG 0.507525 1.1:-53676563 MS.gene49374:CDS
GAGGAACATAAGGAGAAAGA+AGG 0.510760 1.1:-53677118 MS.gene49374:CDS
ACTAGAATCACAAGAGAAGA+TGG 0.536908 1.1:-53676623 MS.gene49374:CDS
CCACCACCCCAACCAAATGA+AGG 0.544676 1.1:-53677576 MS.gene49374:CDS
TGTGTTTGAAGTATCTGGGA+AGG 0.547658 1.1:+53677412 None:intergenic
GGAGTTGGAAATGTTAGCTA+TGG 0.549635 1.1:-53676707 MS.gene49374:CDS
CAAATGAAAGATTCCTGAGA+GGG 0.550958 1.1:-53677155 MS.gene49374:CDS
AGGAACATAAGGAGAAAGAA+GGG 0.559452 1.1:-53677117 MS.gene49374:CDS
GAAAGAGTGCTTGATGATGA+AGG 0.560834 1.1:-53676601 MS.gene49374:CDS
TGTAGTTGGTGAATGAAGAC+AGG 0.561937 1.1:+53676880 None:intergenic
AGATGGAACATAGGTTAGAA+GGG 0.564470 1.1:-53676957 MS.gene49374:CDS
CACACTGTATCTGCTAGAGA+TGG 0.569897 1.1:-53676974 MS.gene49374:CDS
CCAACTTCAATAGGCTGAGA+AGG 0.573783 1.1:+53677093 None:intergenic
TCATAATCACATAACTCTAA+CGG 0.576133 1.1:+53676742 None:intergenic
ATCCTAAATTCTTGACTCAG+TGG 0.576729 1.1:+53676481 None:intergenic
AAGAGAAAGCTTGTTGAACA+AGG 0.580615 1.1:-53676808 MS.gene49374:CDS
GTTATGTGATTATGAATTTG+GGG 0.588830 1.1:-53676734 MS.gene49374:CDS
GGGAAGGAGATGATTGGAGA+AGG 0.595385 1.1:+53677428 None:intergenic
GAGGGCAAAGACATCTATTG+AGG 0.598712 1.1:-53677137 MS.gene49374:CDS
ATAATTTCATGGAACAGAAG+TGG 0.614186 1.1:-53677480 MS.gene49374:CDS
GCAAATGAAAGATTCCTGAG+AGG 0.614961 1.1:-53677156 MS.gene49374:CDS
GTTGAACAAGGAACTAGACT+AGG 0.638387 1.1:-53676796 MS.gene49374:CDS
AATTCTTAGACATATGTACT+CGG 0.641403 1.1:-53677631 None:intergenic
ATCTGCTAGAGATGGAACAT+AGG 0.648151 1.1:-53676966 MS.gene49374:CDS
AGAGGAAGTACATGAACCTG+AGG 0.670115 1.1:-53676647 MS.gene49374:CDS
AAAGAGTGCTTGATGATGAA+GGG 0.670867 1.1:-53676600 MS.gene49374:CDS
GTAGTTGGTGAATGAAGACA+GGG 0.704135 1.1:+53676881 None:intergenic
CATCTCTAGCAGATACAGTG+TGG 0.710812 1.1:+53676975 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTTAGTATGAAATTTG+AGG - chr1.1:53677511-53677530 MS.gene49374:CDS 20.0%
!! AGTTATGTGATTATGAATTT+GGG - chr1.1:53677339-53677358 MS.gene49374:intron 20.0%
!! ATGTTTAGTATGAAATTTGA+GGG - chr1.1:53677512-53677531 MS.gene49374:CDS 20.0%
!! TTACAGTTCAAATTTATTCT+CGG - chr1.1:53676809-53676828 MS.gene49374:CDS 20.0%
! AAAAATTGATCCAGATAGAT+GGG - chr1.1:53676890-53676909 MS.gene49374:CDS 25.0%
! GAGTTATGTGATTATGAATT+TGG - chr1.1:53677338-53677357 MS.gene49374:intron 25.0%
! GTTATGTGATTATGAATTTG+GGG - chr1.1:53677340-53677359 MS.gene49374:intron 25.0%
! TCATAATCACATAACTCTAA+CGG + chr1.1:53677335-53677354 None:intergenic 25.0%
! TTCTGTTCCATGAAATTATA+TGG + chr1.1:53676593-53676612 None:intergenic 25.0%
!! ATTATTGTGTTTGAAGTATC+TGG + chr1.1:53676670-53676689 None:intergenic 25.0%
!! GTGTTATACAATATTTTGCA+GGG - chr1.1:53676861-53676880 MS.gene49374:CDS 25.0%
!! TGTGTTATACAATATTTTGC+AGG - chr1.1:53676860-53676879 MS.gene49374:CDS 25.0%
!! TTATTGTGTTTGAAGTATCT+GGG + chr1.1:53676669-53676688 None:intergenic 25.0%
ACAACAGAAAGAGAAGAAAA+AGG - chr1.1:53677214-53677233 MS.gene49374:intron 30.0%
ATAATTTCATGGAACAGAAG+TGG - chr1.1:53676594-53676613 MS.gene49374:CDS 30.0%
ATGCAGAAATTGATCGTTTA+AGG - chr1.1:53677018-53677037 MS.gene49374:CDS 30.0%
ATTTCAACAAGTCCTTCATT+TGG + chr1.1:53676513-53676532 None:intergenic 30.0%
GAAAAATTGATCCAGATAGA+TGG - chr1.1:53676889-53676908 MS.gene49374:CDS 30.0%
GTACCAACCATATAATTTCA+TGG - chr1.1:53676583-53676602 MS.gene49374:CDS 30.0%
GTTCCATGAAATTATATGGT+TGG + chr1.1:53676589-53676608 None:intergenic 30.0%
TCATTGTTATCTTCAGAAGT+TGG + chr1.1:53677551-53677570 None:intergenic 30.0%
TGATCCTAATGTCTCTATTT+AGG - chr1.1:53676752-53676771 MS.gene49374:CDS 30.0%
!! CTACATCAAATGTTTTTGTG+AGG + chr1.1:53676551-53676570 None:intergenic 30.0%
!! TCAAATGTTTTTGTGAGGAA+TGG + chr1.1:53676546-53676565 None:intergenic 30.0%
!!! AAGCTTTCTCTTTTTTGTCA+TGG + chr1.1:53677258-53677277 None:intergenic 30.0%
!!! ATGTTTTCTCGTACTGATTT+TGG - chr1.1:53676834-53676853 MS.gene49374:CDS 30.0%
AACAAGTCCTTCATTTGGTT+GGG + chr1.1:53676508-53676527 None:intergenic 35.0%
AACCACTGAGTCAAGAATTT+AGG - chr1.1:53677591-53677610 MS.gene49374:CDS 35.0%
AATGTTAGCTATGGAAATGC+AGG - chr1.1:53677376-53677395 MS.gene49374:CDS 35.0%
ACTAGAATCACAAGAGAAGA+TGG - chr1.1:53677451-53677470 MS.gene49374:CDS 35.0%
AGATGGAACATAGGTTAGAA+GGG - chr1.1:53677117-53677136 MS.gene49374:CDS 35.0%
AGGAACATAAGGAGAAAGAA+GGG - chr1.1:53676957-53676976 MS.gene49374:CDS 35.0%
ATCCTAAATTCTTGACTCAG+TGG + chr1.1:53677596-53677615 None:intergenic 35.0%
CAAATGAAAGATTCCTGAGA+GGG - chr1.1:53676919-53676938 MS.gene49374:CDS 35.0%
CTGACCTAAATAGAGACATT+AGG + chr1.1:53676759-53676778 None:intergenic 35.0%
GACATCTATTGAGGAACATA+AGG - chr1.1:53676946-53676965 MS.gene49374:CDS 35.0%
TCTTCTCTTTCTGTTGTAGT+TGG + chr1.1:53677211-53677230 None:intergenic 35.0%
TTTGCAAATTCCCATCTATC+TGG + chr1.1:53676903-53676922 None:intergenic 35.0%
!! AAAGAGTGCTTGATGATGAA+GGG - chr1.1:53677474-53677493 MS.gene49374:CDS 35.0%
!! AAGAGAAAGCTTGTTGAACA+AGG - chr1.1:53677266-53677285 MS.gene49374:intron 35.0%
!! GGGGAAAATAATGGATAAAG+AGG - chr1.1:53677409-53677428 MS.gene49374:CDS 35.0%
!! TTTTGGAAGGGGGAAAATAA+TGG - chr1.1:53677400-53677419 MS.gene49374:CDS 35.0%
ACAAGTCCTTCATTTGGTTG+GGG + chr1.1:53676507-53676526 None:intergenic 40.0%
ATCTGCTAGAGATGGAACAT+AGG - chr1.1:53677108-53677127 MS.gene49374:CDS 40.0%
CAACAAGTCCTTCATTTGGT+TGG + chr1.1:53676509-53676528 None:intergenic 40.0%
CAAGGAACTAGACTAGGTAT+TGG - chr1.1:53677284-53677303 MS.gene49374:intron 40.0%
CCAACACAACCAACTTCAAT+AGG + chr1.1:53676993-53677012 None:intergenic 40.0%
CTCGGTGAAAGAAGAATACT+TGG - chr1.1:53676461-53676480 MS.gene49374:CDS 40.0%
GAGATGGAACATAGGTTAGA+AGG - chr1.1:53677116-53677135 MS.gene49374:CDS 40.0%
GAGGAACATAAGGAGAAAGA+AGG - chr1.1:53676956-53676975 MS.gene49374:CDS 40.0%
GCAAATGAAAGATTCCTGAG+AGG - chr1.1:53676918-53676937 MS.gene49374:CDS 40.0%
GGAGTTGGAAATGTTAGCTA+TGG - chr1.1:53677367-53677386 MS.gene49374:intron 40.0%
GTTGAACAAGGAACTAGACT+AGG - chr1.1:53677278-53677297 MS.gene49374:intron 40.0%
TGTATCCCAAACCACAAAAC+TGG + chr1.1:53676622-53676641 None:intergenic 40.0%
! CCTATTGAAGTTGGTTGTGT+TGG - chr1.1:53676990-53677009 MS.gene49374:CDS 40.0%
! GCTATGGAAATGCAGGTTTT+TGG - chr1.1:53677383-53677402 MS.gene49374:CDS 40.0%
! GTTTTTGTGAGGAATGGTTG+TGG + chr1.1:53676540-53676559 None:intergenic 40.0%
! TGATTATGAATTTGGGGCGT+CGG - chr1.1:53677346-53677365 MS.gene49374:intron 40.0%
! TGTGTTTGAAGTATCTGGGA+AGG + chr1.1:53676665-53676684 None:intergenic 40.0%
!! AAATGCAGGTTTTTGGAAGG+GGG - chr1.1:53677390-53677409 MS.gene49374:CDS 40.0%
!! GAAAGAGTGCTTGATGATGA+AGG - chr1.1:53677473-53677492 MS.gene49374:CDS 40.0%
!! GAAATGCAGGTTTTTGGAAG+GGG - chr1.1:53677389-53677408 MS.gene49374:CDS 40.0%
!! GGAAATGCAGGTTTTTGGAA+GGG - chr1.1:53677388-53677407 MS.gene49374:CDS 40.0%
!! GTAGTTGGTGAATGAAGACA+GGG + chr1.1:53677196-53677215 None:intergenic 40.0%
!! TGGAAATGCAGGTTTTTGGA+AGG - chr1.1:53677387-53677406 MS.gene49374:CDS 40.0%
!! TGTAGTTGGTGAATGAAGAC+AGG + chr1.1:53677197-53677216 None:intergenic 40.0%
!!! TCTCTTTTTTGTCATGGTCG+CGG + chr1.1:53677252-53677271 None:intergenic 40.0%
ATAGATGTCTTTGCCCTCTC+AGG + chr1.1:53676935-53676954 None:intergenic 45.0%
CACACTGTATCTGCTAGAGA+TGG - chr1.1:53677100-53677119 MS.gene49374:CDS 45.0%
CATCTCTAGCAGATACAGTG+TGG + chr1.1:53677102-53677121 None:intergenic 45.0%
CCAACTTCAATAGGCTGAGA+AGG + chr1.1:53676984-53677003 None:intergenic 45.0%
CCTTCTCAGCCTATTGAAGT+TGG - chr1.1:53676981-53677000 MS.gene49374:CDS 45.0%
GAGGGCAAAGACATCTATTG+AGG - chr1.1:53676937-53676956 MS.gene49374:CDS 45.0%
GGAACATAGGTTAGAAGGGA+TGG - chr1.1:53677121-53677140 MS.gene49374:CDS 45.0%
GTATCTGGGAAGGAGATGAT+TGG + chr1.1:53676655-53676674 None:intergenic 45.0%
TCTTGTGATTCTAGTGCCTC+AGG + chr1.1:53677446-53677465 None:intergenic 45.0%
! AGAGGAAGTACATGAACCTG+AGG - chr1.1:53677427-53677446 MS.gene49374:CDS 45.0%
!! GCTTGATGATGAAGGGTTCT+GGG - chr1.1:53677481-53677500 MS.gene49374:CDS 45.0%
!! TGCTTGATGATGAAGGGTTC+TGG - chr1.1:53677480-53677499 MS.gene49374:CDS 45.0%
!! TGGCACCAGTTTTGTGGTTT+GGG - chr1.1:53676614-53676633 MS.gene49374:CDS 45.0%
AGTCCTTCATTTGGTTGGGG+TGG + chr1.1:53676504-53676523 None:intergenic 50.0%
GGGAAGGAGATGATTGGAGA+AGG + chr1.1:53676649-53676668 None:intergenic 50.0%
! CAGAAGTGGCACCAGTTTTG+TGG - chr1.1:53676608-53676627 MS.gene49374:CDS 50.0%
!! GTGGCACCAGTTTTGTGGTT+TGG - chr1.1:53676613-53676632 MS.gene49374:CDS 50.0%
CCACCACCCCAACCAAATGA+AGG - chr1.1:53676498-53676517 MS.gene49374:CDS 55.0%
CCTTCATTTGGTTGGGGTGG+TGG + chr1.1:53676501-53676520 None:intergenic 55.0%
! TCATTTGGTTGGGGTGGTGG+TGG + chr1.1:53676498-53676517 None:intergenic 55.0%
!! TGAATTTGGGGCGTCGGAGT+TGG - chr1.1:53677352-53677371 MS.gene49374:intron 55.0%
!! TGGGGTGGTGGTGGAATCGT+TGG + chr1.1:53676489-53676508 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 53676456 53677640 53676456 ID=MS.gene49374
chr1.1 mRNA 53676456 53677640 53676456 ID=MS.gene49374.t1;Parent=MS.gene49374
chr1.1 exon 53677374 53677640 53677374 ID=MS.gene49374.t1.exon1;Parent=MS.gene49374.t1
chr1.1 CDS 53677374 53677640 53677374 ID=cds.MS.gene49374.t1;Parent=MS.gene49374.t1
chr1.1 exon 53676456 53677214 53676456 ID=MS.gene49374.t1.exon2;Parent=MS.gene49374.t1
chr1.1 CDS 53676456 53677214 53676456 ID=cds.MS.gene49374.t1;Parent=MS.gene49374.t1
Gene Sequence

>MS.gene49374

ATGTACTCGGTGAAAGAAGAATACTTGGAACCAACGATTCCACCACCACCCCAACCAAATGAAGGACTTGTTGAAATTAGACCACAACCATTCCTCACAAAAACATTTGATGTAGTTGATGATCAAAGTACCAACCATATAATTTCATGGAACAGAAGTGGCACCAGTTTTGTGGTTTGGGATACACATGCCTTCTCCAATCATCTCCTTCCCAGATACTTCAAACACAATAATTTCTCAAGTTTTGTCAGACAATTAAACACTTATGTAAGTACTACGTACTCTCTAGATACACATGATCCTAATGTCTCTATTTAGGTCAGATTTTAAAACATTGCTTATATAGTAAGTAATTACAGTTCAAATTTATTCTCGGCTATGTTTTCTCGTACTGATTTTGGACTTGTGTTATACAATATTTTGCAGGGATTTAGAAAAATTGATCCAGATAGATGGGAATTTGCAAATGAAAGATTCCTGAGAGGGCAAAGACATCTATTGAGGAACATAAGGAGAAAGAAGGGACCTTCTCAGCCTATTGAAGTTGGTTGTGTTGGACTAGATGCAGAAATTGATCGTTTAAGGCAAGAGAAACACGTGTTGATGACAGAGCTTATGAGTCTTAGAAAGCAGCAATATGATACCACACTGTATCTGCTAGAGATGGAACATAGGTTAGAAGGGATGGAAATCAATCAGAAGAAAATGATGTCTTTCTTAGCTAGAGCTATGAAAAACCCTGTCTTCATTCACCAACTACAACAGAAAGAGAAGAAAAAGGAGCTTGAAGAATCCGCGACCATGACAAAAAAGAGAAAGCTTGTTGAACAAGGAACTAGACTAGGTATTGGACAATCAAGCAGTGTTAAAGTTGAGCCGTTAGAGTTATGTGATTATGAATTTGGGGCGTCGGAGTTGGAAATGTTAGCTATGGAAATGCAGGTTTTTGGAAGGGGGAAAATAATGGATAAAGAGGAAGTACATGAACCTGAGGCACTAGAATCACAAGAGAAGATGGAAAGAGTGCTTGATGATGAAGGGTTCTGGGAAGATCTAATGTTTAGTATGAAATTTGAGGGTAGATTTGACATTCCAACTTCTGAAGATAACAATGAGAATGAAGATGATTCAAGTGAACCACTGAGTCAAGAATTTAGGATTAACTCTTTTCATTCAGTTCACTAG
Protein sequence

>MS.gene49374.t1

MYSVKEEYLEPTIPPPPQPNEGLVEIRPQPFLTKTFDVVDDQSTNHIISWNRSGTSFVVWDTHAFSNHLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANERFLRGQRHLLRNIRRKKGPSQPIEVGCVGLDAEIDRLRQEKHVLMTELMSLRKQQYDTTLYLLEMEHRLEGMEINQKKMMSFLARAMKNPVFIHQLQQKEKKKELEESATMTKKRKLVEQGTRLGIGQSSSVKVEPLELCDYEFGASELEMLAMEMQVFGRGKIMDKEEVHEPEALESQEKMERVLDDEGFWEDLMFSMKFEGRFDIPTSEDNNENEDDSSEPLSQEFRINSFHSVH