AlfalfaGEDB | MS.gene49455

M. sativa cultivar XinJiangDaYe / MS.gene49455

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49455.t1	XP_013470391.1	92.1	354	19	2	1	352	1	347	1.00E-182	649.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49455.t1	Q9FIM0	27.0	215	137	6	6	217	6	203	1.1e-12	76.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49455.t1	A0A072VR19	92.1	354	19	2	1	352	1	347	7.5e-183	649.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene49455.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49455.t1	MTR_1g114730	92.090	354	19	2	1	352	1	347	0.0	657
MS.gene49455.t1	MTR_6g018920	73.596	356	80	3	1	352	1	346	0.0	533
MS.gene49455.t1	MTR_6g005450	61.667	360	117	7	1	352	1	347	3.29e-142	413
MS.gene49455.t1	MTR_6g005440	56.742	356	109	6	1	352	1	315	1.88e-129	379
MS.gene49455.t1	MTR_4g107170	41.935	155	87	1	1	155	1	152	5.57e-35	132
MS.gene49455.t1	MTR_2g049610	43.590	156	82	2	1	156	1	150	9.49e-33	125
MS.gene49455.t1	MTR_4g045977	37.126	167	102	1	1	167	1	164	5.12e-30	121
MS.gene49455.t1	MTR_2g049630	37.017	181	109	2	2	181	4	180	3.14e-28	115
MS.gene49455.t1	MTR_2g049530	38.365	159	93	2	3	160	5	159	3.34e-28	111
MS.gene49455.t1	MTR_0061s0010	42.553	141	20	3	29	169	1	80	1.27e-21	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49455.t1	AT5G55690	39.310	145	80	2	1	144	1	138	1.68e-24	103
MS.gene49455.t1	AT5G55690	39.310	145	80	2	1	144	1	138	1.68e-24	103
MS.gene49455.t1	AT5G58890	30.380	158	105	3	6	160	6	161	2.15e-17	83.2
MS.gene49455.t1	AT3G18650	29.240	171	107	5	16	180	31	193	1.35e-14	75.9
MS.gene49455.t1	AT1G22590	29.677	155	98	3	1	150	1	149	1.25e-13	69.3
MS.gene49455.t1	AT1G65330	33.333	111	67	4	3	112	2	106	1.53e-12	68.6
MS.gene49455.t1	AT2G28700	26.842	190	117	7	1	182	1	176	2.18e-12	68.6
MS.gene49455.t1	AT1G65300	33.036	112	66	4	3	112	2	106	2.32e-12	68.2
MS.gene49455.t1	AT3G05860	37.662	77	42	2	1	77	1	71	2.83e-12	66.2
MS.gene49455.t1	AT3G05860	37.662	77	42	2	1	77	1	71	4.42e-12	66.6

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Find 123 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCACGACCTACAAAAT+TGG	0.234450	1.4:+87232114	None:intergenic
AAATCGTTGGTTGCAAGAGA+CGG	0.520320	1.4:-87229495	MS.gene49455:CDS
AACAAGAGGATATGTCTATC+TGG	0.312544	1.4:-87230096	MS.gene49455:CDS
AACATCAACATCACAAAGAA+TGG	0.436469	1.4:+87232156	None:intergenic
AAGGAAGGATGGAGCTGAAA+AGG	0.426747	1.4:-87231405	MS.gene49455:CDS
AATAGCTCATGAATCACACA+AGG	0.705760	1.4:-87231777	MS.gene49455:CDS
AATCCACGACCTACAAAATT+GGG	0.470390	1.4:+87232115	None:intergenic
AATCGTTGGTTGCAAGAGAC+GGG	0.487795	1.4:-87229494	MS.gene49455:CDS
AATCTCTCAAATCTACCACA+TGG	0.661283	1.4:-87231296	MS.gene49455:CDS
AATGAATCTTTCAATTCTCT+TGG	0.359377	1.4:-87231899	MS.gene49455:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCAACATCACAAAGAA+TGG	+	chr1.4:87229509-87229528	None:intergenic	30.0%
AATTTCGTCGGAAATAGAAA+AGG	-	chr1.4:87231031-87231050	MS.gene49455:intron	30.0%
ACAAAATGGATCAACATTAG+TGG	+	chr1.4:87231863-87231882	None:intergenic	30.0%
ACATTTCAAAAGAGAAAGGA+AGG	-	chr1.4:87229457-87229476	MS.gene49455:CDS	30.0%
AGAAATTAATGATAGGGAGA+TGG	-	chr1.4:87230867-87230886	MS.gene49455:intron	30.0%
AGATAAGGACTACCAATATA+TGG	+	chr1.4:87231155-87231174	None:intergenic	30.0%
ATAAACTTCCTCAATTTCGT+CGG	-	chr1.4:87231019-87231038	MS.gene49455:intron	30.0%
ATCAGATAAAAATATAGCGC+TGG	+	chr1.4:87232199-87232218	None:intergenic	30.0%
ATGAGATTGAAGTAGTAACT+AGG	+	chr1.4:87229943-87229962	None:intergenic	30.0%
ATTAGTGATAAAAACCCCTT+AGG	-	chr1.4:87230009-87230028	MS.gene49455:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	87229400	87232284	87229400	ID=MS.gene49455
chr1.4	mRNA	87229400	87232284	87229400	ID=MS.gene49455.t1;Parent=MS.gene49455
chr1.4	exon	87231230	87232284	87231230	ID=MS.gene49455.t1.exon1;Parent=MS.gene49455.t1
chr1.4	CDS	87231230	87232284	87231230	ID=cds.MS.gene49455.t1;Parent=MS.gene49455.t1
chr1.4	exon	87230076	87230264	87230076	ID=MS.gene49455.t1.exon2;Parent=MS.gene49455.t1
chr1.4	CDS	87230076	87230264	87230076	ID=cds.MS.gene49455.t1;Parent=MS.gene49455.t1
chr1.4	exon	87229400	87229685	87229400	ID=MS.gene49455.t1.exon3;Parent=MS.gene49455.t1
chr1.4	CDS	87229400	87229685	87229400	ID=cds.MS.gene49455.t1;Parent=MS.gene49455.t1

Gene Sequence

>MS.gene49455

ATGGGTCGTGGAAGAATATCTATGGAACTCATCCAAAAGGAGAAATCACGGAAGTCAACATTTCAAAAGAGAAAGGAAGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAGTTCTCTATGCTCCCAATTTTGTAGGTCGTGGATTTGCTGAACCTGAAACATGGCCTAAAGACAAAAGAGAGGTACACAGAATCCTTCAAAAGTACTATAACACAACAAATGATAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGGATGAGAAAACTTGAATTTGAGATTTCCAAAGTGCGTAAAGAGAAACTAAAGATGATGTATCCAACTTGGAATGAATCTTTCAATTCTCTTGGAGCGGAACAACTGATATTATTTGCTAGCAAACTGGAAGCTAAGCTTGATGCTTGTAATCAAAAGAAGCATATGCTAAAAGAAGATCATAAGGGAAAAACAATAGCTCATGAATCACACAAGGTAGATAAACTTATCAGTACTCCTTCCTTGAATCCTAGTTACTACTTCAATCTCATGCAAAATTCCATGTCTCAAGCACAAACATATCCTCCAATGATGAATATTAGTGATAAAAACCCCTTAGGGTTTTGGCCACTTCAACCGGGACAAAGCTCTCAACCTTCTTCTTTGATTTCCAATATACAAAGCTCGCACCATGTGGAGTCTGAGGAGGGTAGATTTGTGCAGTCTTACCCCTACAAGAATATTGATGTTAATGGGGCTAATTGGGCCAATCAGGTTAATGTTAATGATACCTATAATGGGGGTTATCAGGACCGATGCTTCGGGCTTCCCAAAATCAATATGGAAAGGAAGGATGGAGCTGAAAAGGATGAAAACTCGTCACCATACTATTACAATGGAAATGCAATGGCAATGCAATCAAGCCCTATTGCCTTGCACACTTTCCCTTTTCAGAATCTCTCAAATCTACCACATGGATTTCAACTTAATGGATTCAATGCTAAGGATATTCTGCAAGCTCATATGTTCATGAATGGAAGGAAGTAATGCATAACACTTTGAACTTTCAGGCTAGATTCTTAGTATAAGATTGTTGAACTTTGTTATCTTTTTTCTAGTCTTTATTTTCAGTCGTTTTATAGATTTTTGAATTAACAAAAATTTCTTTTCTTGGTTTTTAAGTCGAACAAATAGCTTGGTGCTTATTATATATTTCTGGGTTAAAAATTGAATGTTATGTTATTATTACTTGCAAAATCTTCTTGTTGCTATTTGTTTTATGATCATTGCTCTAAATTTGACATCTCATTGTCACATTACATGTATGTATGTAAGTTACTAATACTAATATATAGATGAGGGTTCAAAATTATCCTTTTTTATGTTATGAAACAAACATTCACTGATGTAATTTTTATATTGGTTAATTTTACAAATACATAAGCTACATTTTGAAGAAATTAATGATAGGGAGATGGTGGCAATAGCTAGCTTTGTCAACGTGCTTGATTTTTTTAATATGAAATGAATCTAATTTCACTTATTTGCAGCGACCAACATTTTAGTTTGTCATATTTTTCTTTTGAAATAAAATTACTAATTTTCTTATAAACTTCCTCAATTTCGTCGGAAATAGAAAAGGTGAGTATTTCTCTCTCAACTAATTTTTCTTTTACGCGAGAGTTGGAGATCGAGCTCATGACCAATAGCGGTGAACTAATTCCTTACCATTCGAACCAACCATATATTGGTAGTCCTTATCTCCTTAAATCCTAGAATAATAACTTAGTTATGATAAACTTGAAAATACAAATAGGTTTATGTATTATTTTTCTTAATTACAAGTAATTTGGACCTTTACCCTACCTAATAAGAAATATCCATAGTTATTTTGAAGTGACAATATTAATATTCATGGCATATTTGTAAAGTAGTGAACATGATAATTCAAAGTCATATTTTTCACTGAGTATTACTAGGTAGGTTAAGAATGTGAGGGACTTTTTAGGTGTGATCCTTGGGTGTCTGCTACCCCTCTTAAGGTGAGATTCCCAAGACTTTTCCAAGTGTCCACTCAAAAGGAAGCAAAAATCCAGAACTTGTTGCGTAGCAGTACAGTTCAACACATTCTATCCATTCCATTACTGTTGGAGGAACAAGAGGATATGTCTATCTGGGATGAGGAGATGCATGGAAAGTAGACTATTCGTTCGGGATATAAACTGGCTATGAGGATGTTGTTGAATGCTGAGAGACAATTTGTTCAAGGGATGGTACAGTATTTGGCGAGCAAGAGTGCCTCCGAAAGTACAATAATTTAATTTGGTGAATATGTCGAAGTTGCTCACCGTCAAGGGTAAGGTTGTAGGAAAGGCAGGTGCCCTGTCCTGCTCACTGAGATGTGTGTTGATCATCAAGAAAATGATTGGCATATATTTTTTCAATGCTCCACTAATGTTGATCCATTTTGTAGTCCCGGGTTCAGCGGTTTAATTCTGTGGGAGCAGTGTATTGATGGATGTTTGTGCGTGCGAAACAGAAGACGTGTCAGTCGTATCTGTGGTGCCAGATTTTTGATTTAGTACAGACAAGTGGGAAGAGTGGAGGTAGTTCAGAACTATGCAGAGAATGGAATCGACCAGAGCTATATCCTTAATTGGGAAGGAACTTTCGTGAAGGCTTTGTCAGGATGGAATCATGGAAATCGAGCGGAGATTCTAGTTTACGAAGGCGAGCCTTTGGCACTCTTAAATTCAAATCGTTGGTTGCAAGAGACGGGATTGTCCAGCGCTATATTTTTATCTGATTCACAAAATCTGGTGGAAGTATACATAGTGGAAGCTGACCTTTCTTCAGTGGATCCTCTATGTTAA

Protein sequence

>MS.gene49455.t1

MGRGRISMELIQKEKSRKSTFQKRKEGLMKKVNEFSILCDVDVCVVLYAPNFVGRGFAEPETWPKDKREVHRILQKYYNTTNDRRPKIYDVQEYFKERMRKLEFEISKVRKEKLKMMYPTWNESFNSLGAEQLILFASKLEAKLDACNQKKHMLKEDHKGKTIAHESHKVDKLISTPSLNPSYYFNLMQNSMSQAQTYPPMMNISDKNPLGFWPLQPGQSSQPSSLISNIQSSHHVESEEGRFVQSYPYKNIDVNGANWANQVNVNDTYNGGYQDRCFGLPKINMERKDGAEKDENSSPYYYNGNAMAMQSSPIALHTFPFQNLSNLPHGFQLNGFNAKDILQAHMFMNGRKCDPWVSATPLKVRFPRLFQVSTQKEAKIQNLLRSSTVQHILSIPLLLEEQEDMSIWDEEMHGKQVGRVEVVQNYAENGIDQSYILNWEGTFVKALSGWNHGNRAEILVYEGEPLALLNSNRWLQETGLSSAIFLSDSQNLVEVYIVEADLSSVDPLC