Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49463.t1 | XP_024632961.1 | 85.3 | 536 | 55 | 2 | 1 | 512 | 1 | 536 | 1.40E-267 | 931.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49463.t1 | Q9SZL8 | 28.5 | 470 | 313 | 6 | 32 | 499 | 70 | 518 | 2.3e-56 | 221.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49463.t1 | D3YBB9 | 79.5 | 512 | 105 | 0 | 1 | 512 | 49 | 560 | 1.7e-243 | 851.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49463.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49463.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 548 |
| MS.gene49463.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 6.62e-176 | 496 |
| MS.gene49463.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 1.32e-155 | 444 |
| MS.gene49463.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 4.07e-146 | 424 |
| MS.gene49463.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 9.09e-35 | 134 |
| MS.gene49463.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 1.59e-145 | 418 |
| MS.gene49463.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 1.84e-127 | 371 |
| MS.gene49463.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 5.55e-121 | 353 |
| MS.gene49463.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 8.65e-121 | 353 |
| MS.gene49463.t1 | MTR_5g071590 | 74.444 | 180 | 33 | 2 | 1 | 167 | 1 | 180 | 5.58e-93 | 281 |
| MS.gene49463.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 2.08e-89 | 271 |
| MS.gene49463.t1 | MTR_0019s0290 | 82.353 | 153 | 24 | 1 | 84 | 233 | 8 | 160 | 1.69e-88 | 269 |
| MS.gene49463.t1 | MTR_1281s0010 | 82.569 | 109 | 19 | 0 | 19 | 127 | 1 | 109 | 4.90e-59 | 191 |
| MS.gene49463.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.43e-39 | 147 |
| MS.gene49463.t1 | MTR_0337s0060 | 93.939 | 66 | 4 | 0 | 447 | 512 | 21 | 86 | 1.27e-35 | 133 |
| MS.gene49463.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 3.61e-32 | 131 |
| MS.gene49463.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 1.46e-31 | 121 |
| MS.gene49463.t1 | MTR_1g070355 | 26.994 | 326 | 213 | 8 | 41 | 362 | 80 | 384 | 1.16e-19 | 92.8 |
| MS.gene49463.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 5.98e-15 | 77.8 |
| MS.gene49463.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.34e-13 | 66.6 |
| MS.gene49463.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 2.02e-13 | 73.2 |
| MS.gene49463.t1 | MTR_1g013060 | 30.093 | 216 | 132 | 8 | 40 | 253 | 29 | 227 | 4.38e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49463.t1 | AT4G38180 | 28.842 | 475 | 305 | 7 | 32 | 499 | 70 | 518 | 7.61e-62 | 217 |
| MS.gene49463.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 1.81e-42 | 162 |
| MS.gene49463.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 1.81e-42 | 162 |
| MS.gene49463.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 1.81e-42 | 162 |
| MS.gene49463.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene49463.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene49463.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene49463.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene49463.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene49463.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 5.69e-41 | 157 |
| MS.gene49463.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 9.86e-41 | 157 |
| MS.gene49463.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 1.04e-40 | 156 |
| MS.gene49463.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 1.04e-40 | 156 |
| MS.gene49463.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 9.69e-39 | 151 |
| MS.gene49463.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 9.69e-39 | 151 |
| MS.gene49463.t1 | AT4G38170 | 28.623 | 276 | 186 | 4 | 235 | 507 | 24 | 291 | 2.48e-38 | 148 |
| MS.gene49463.t1 | AT2G27110 | 29.758 | 289 | 195 | 3 | 213 | 499 | 36 | 318 | 7.81e-38 | 148 |
| MS.gene49463.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 1.07e-37 | 148 |
| MS.gene49463.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 1.07e-37 | 148 |
| MS.gene49463.t1 | AT1G10240 | 26.292 | 445 | 290 | 13 | 49 | 482 | 62 | 479 | 6.81e-37 | 145 |
| MS.gene49463.t1 | AT1G10240 | 26.292 | 445 | 290 | 13 | 49 | 482 | 62 | 479 | 6.81e-37 | 145 |
| MS.gene49463.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.24e-36 | 144 |
| MS.gene49463.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.24e-36 | 144 |
| MS.gene49463.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.25e-36 | 144 |
| MS.gene49463.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 1.30e-34 | 139 |
| MS.gene49463.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 1.30e-34 | 139 |
| MS.gene49463.t1 | AT1G80010 | 25.641 | 468 | 299 | 15 | 41 | 493 | 101 | 534 | 2.68e-32 | 132 |
| MS.gene49463.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 4.72e-32 | 131 |
| MS.gene49463.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 6.83e-32 | 130 |
| MS.gene49463.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 6.83e-32 | 130 |
| MS.gene49463.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 7.57e-32 | 130 |
| MS.gene49463.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 7.57e-32 | 130 |
| MS.gene49463.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 7.57e-32 | 130 |
| MS.gene49463.t1 | AT2G32250 | 24.169 | 451 | 268 | 10 | 50 | 495 | 12 | 393 | 4.69e-31 | 128 |
| MS.gene49463.t1 | AT2G32250 | 24.169 | 451 | 268 | 10 | 50 | 495 | 12 | 393 | 4.72e-31 | 128 |
| MS.gene49463.t1 | AT1G52520 | 23.371 | 445 | 304 | 9 | 41 | 484 | 91 | 499 | 1.68e-28 | 120 |
| MS.gene49463.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.70e-28 | 119 |
| MS.gene49463.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 4.71e-28 | 119 |
| MS.gene49463.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 5.04e-28 | 119 |
| MS.gene49463.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.65e-28 | 119 |
| MS.gene49463.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.65e-28 | 119 |
| MS.gene49463.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 7.52e-28 | 118 |
| MS.gene49463.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 7.52e-28 | 118 |
| MS.gene49463.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 4.66e-17 | 84.7 |
| MS.gene49463.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 5.06e-17 | 84.7 |
Find 71 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5.1:+1332132 | MS.gene49463:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.1:+1331823 | MS.gene49463:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.1:+1332090 | MS.gene49463:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.1:+1331039 | MS.gene49463:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5.1:+1331542 | MS.gene49463:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.1:+1331575 | MS.gene49463:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.1:-1331669 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.1:+1331864 | MS.gene49463:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.1:-1331687 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.1:-1331089 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.1:+1331964 | MS.gene49463:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.1:+1331096 | MS.gene49463:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.1:+1331088 | MS.gene49463:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.1:+1331963 | MS.gene49463:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.1:-1330559 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5.1:+1330330 | MS.gene49463:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5.1:+1330401 | MS.gene49463:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 5.1:+1330484 | MS.gene49463:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.1:+1330736 | MS.gene49463:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.1:+1330618 | MS.gene49463:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5.1:-1331680 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.1:+1330601 | MS.gene49463:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.1:+1330766 | MS.gene49463:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5.1:+1330255 | MS.gene49463:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.1:+1331754 | MS.gene49463:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.1:+1331918 | MS.gene49463:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.1:+1330450 | MS.gene49463:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.1:+1330811 | MS.gene49463:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.1:-1330595 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5.1:+1330388 | MS.gene49463:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.1:+1330879 | MS.gene49463:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5.1:-1330706 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.1:+1330444 | MS.gene49463:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.1:-1331555 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.1:+1331865 | MS.gene49463:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.1:+1330892 | MS.gene49463:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.1:+1332104 | MS.gene49463:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.1:-1332184 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.1:+1330798 | MS.gene49463:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.1:-1330984 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5.1:-1330694 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.1:+1331951 | MS.gene49463:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.1:-1330850 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5.1:+1332123 | MS.gene49463:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.1:+1331969 | MS.gene49463:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 5.1:+1330654 | MS.gene49463:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.1:-1332072 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5.1:+1330495 | MS.gene49463:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.1:-1332067 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.1:+1330496 | MS.gene49463:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 5.1:+1330320 | MS.gene49463:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.1:-1331700 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.1:+1330946 | MS.gene49463:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5.1:+1330279 | MS.gene49463:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.1:+1330814 | MS.gene49463:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 5.1:+1330653 | MS.gene49463:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.1:-1332185 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 5.1:+1330244 | MS.gene49463:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.1:+1330805 | MS.gene49463:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.1:+1331686 | MS.gene49463:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.1:+1330885 | MS.gene49463:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.1:+1330799 | MS.gene49463:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.1:+1330888 | MS.gene49463:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.1:+1332182 | MS.gene49463:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.1:-1330544 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.1:-1331920 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.1:+1330819 | MS.gene49463:CDS |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.1:+1331755 | MS.gene49463:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.1:+1332105 | MS.gene49463:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.1:-1332655 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 5.1:+1331682 | MS.gene49463:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | + | chr5.1:1330653-1330672 | MS.gene49463:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.1:1330444-1330463 | MS.gene49463:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | + | chr5.1:1330654-1330673 | MS.gene49463:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr5.1:1330388-1330407 | MS.gene49463:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5.1:1331271-1331290 | MS.gene49463:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr5.1:1331893-1331912 | MS.gene49463:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr5.1:1331243-1331262 | MS.gene49463:intron | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr5.1:1331731-1331750 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.1:1330450-1330469 | MS.gene49463:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr5.1:1331088-1331107 | MS.gene49463:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr5.1:1331114-1331133 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr5.1:1332264-1332283 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | + | chr5.1:1330320-1330339 | MS.gene49463:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr5.1:1332090-1332109 | MS.gene49463:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr5.1:1330279-1330298 | MS.gene49463:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.1:1331161-1331180 | MS.gene49463:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5.1:1332229-1332248 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr5.1:1332264-1332283 | MS.gene49463:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr5.1:1331823-1331842 | MS.gene49463:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.1:1331263-1331282 | MS.gene49463:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.1:1331519-1331538 | MS.gene49463:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr5.1:1332365-1332384 | MS.gene49463:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.1:1330440-1330459 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5.1:1331270-1331289 | MS.gene49463:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5.1:1330766-1330785 | MS.gene49463:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr5.1:1331897-1331916 | MS.gene49463:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr5.1:1332366-1332385 | MS.gene49463:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr5.1:1331334-1331353 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.1:1330496-1330515 | MS.gene49463:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr5.1:1331096-1331115 | MS.gene49463:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr5.1:1331864-1331883 | MS.gene49463:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr5.1:1330799-1330818 | MS.gene49463:CDS | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | + | chr5.1:1330244-1330263 | MS.gene49463:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr5.1:1331865-1331884 | MS.gene49463:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr5.1:1331558-1331577 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr5.1:1332437-1332456 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr5.1:1331039-1331058 | MS.gene49463:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr5.1:1330484-1330503 | MS.gene49463:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr5.1:1332269-1332288 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr5.1:1331200-1331219 | MS.gene49463:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr5.1:1332267-1332286 | MS.gene49463:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr5.1:1331779-1331798 | MS.gene49463:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr5.1:1332438-1332457 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr5.1:1331092-1331111 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.1:1330585-1330604 | MS.gene49463:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr5.1:1330330-1330349 | MS.gene49463:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr5.1:1332075-1332094 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.1:1330495-1330514 | MS.gene49463:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr5.1:1330967-1330986 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr5.1:1332209-1332228 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.1:1330853-1330872 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr5.1:1331478-1331497 | MS.gene49463:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5.1:1330697-1330716 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.1:1330618-1330637 | MS.gene49463:CDS | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr5.1:1332324-1332343 | MS.gene49463:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.1:1330843-1330862 | MS.gene49463:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5.1:1331672-1331691 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5.1:1331722-1331741 | MS.gene49463:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr5.1:1332549-1332568 | MS.gene49463:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr5.1:1332449-1332468 | MS.gene49463:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.1:1331175-1331194 | MS.gene49463:intron | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr5.1:1332450-1332469 | MS.gene49463:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr5.1:1332546-1332565 | MS.gene49463:intron | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | + | chr5.1:1331001-1331020 | MS.gene49463:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | + | chr5.1:1331002-1331021 | MS.gene49463:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr5.1:1332614-1332633 | MS.gene49463:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5.1:1331734-1331753 | MS.gene49463:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr5.1:1332104-1332123 | MS.gene49463:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr5.1:1330401-1330420 | MS.gene49463:CDS | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | - | chr5.1:1331301-1331320 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr5.1:1332105-1332124 | MS.gene49463:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.1:1330736-1330755 | MS.gene49463:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr5.1:1332439-1332458 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.1:1330584-1330603 | MS.gene49463:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | + | chr5.1:1331951-1331970 | MS.gene49463:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.1:1330579-1330598 | MS.gene49463:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr5.1:1330798-1330817 | MS.gene49463:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.1:1330521-1330540 | MS.gene49463:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr5.1:1330879-1330898 | MS.gene49463:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | - | chr5.1:1331310-1331329 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr5.1:1330562-1330581 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.1:1331575-1331594 | MS.gene49463:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr5.1:1332387-1332406 | MS.gene49463:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5.1:1332034-1332053 | MS.gene49463:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5.1:1331181-1331200 | MS.gene49463:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr5.1:1331907-1331926 | MS.gene49463:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5.1:1331747-1331766 | MS.gene49463:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr5.1:1332616-1332635 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr5.1:1331964-1331983 | MS.gene49463:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr5.1:1332556-1332575 | MS.gene49463:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.1:1331618-1331637 | MS.gene49463:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr5.1:1332617-1332636 | MS.gene49463:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr5.1:1332070-1332089 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr5.1:1331428-1331447 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr5.1:1330255-1330274 | MS.gene49463:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr5.1:1332281-1332300 | MS.gene49463:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr5.1:1332513-1332532 | MS.gene49463:intron | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | + | chr5.1:1331314-1331333 | MS.gene49463:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr5.1:1332512-1332531 | MS.gene49463:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr5.1:1332280-1332299 | MS.gene49463:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr5.1:1331682-1331701 | MS.gene49463:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr5.1:1331424-1331443 | MS.gene49463:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | - | chr5.1:1331013-1331032 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr5.1:1331683-1331702 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | + | chr5.1:1331542-1331561 | MS.gene49463:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr5.1:1332419-1332438 | MS.gene49463:intron | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5.1:1332132-1332151 | MS.gene49463:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr5.1:1332559-1332578 | MS.gene49463:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr5.1:1331963-1331982 | MS.gene49463:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.1:1330535-1330554 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5.1:1330805-1330824 | MS.gene49463:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr5.1:1330888-1330907 | MS.gene49463:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr5.1:1330946-1330965 | MS.gene49463:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr5.1:1330547-1330566 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | - | chr5.1:1331923-1331942 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr5.1:1332182-1332201 | MS.gene49463:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr5.1:1332534-1332553 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | - | chr5.1:1330709-1330728 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.1:1330589-1330608 | MS.gene49463:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr5.1:1330885-1330904 | MS.gene49463:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr5.1:1332123-1332142 | MS.gene49463:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr5.1:1332432-1332451 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr5.1:1332514-1332533 | MS.gene49463:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr5.1:1330987-1331006 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr5.1:1330598-1330617 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr5.1:1331986-1332005 | MS.gene49463:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr5.1:1331969-1331988 | MS.gene49463:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.1:1330601-1330620 | MS.gene49463:CDS | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr5.1:1331009-1331028 | MS.gene49463:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr5.1:1331690-1331709 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr5.1:1331686-1331705 | MS.gene49463:CDS | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | + | chr5.1:1332469-1332488 | MS.gene49463:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr5.1:1332187-1332206 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | + | chr5.1:1331918-1331937 | MS.gene49463:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | + | chr5.1:1332470-1332489 | MS.gene49463:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr5.1:1331755-1331774 | MS.gene49463:CDS | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | + | chr5.1:1331290-1331309 | MS.gene49463:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr5.1:1331754-1331773 | MS.gene49463:CDS | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5.1:1330811-1330830 | MS.gene49463:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr5.1:1331703-1331722 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr5.1:1332188-1332207 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.1:1330892-1330911 | MS.gene49463:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5.1:1330814-1330833 | MS.gene49463:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5.1:1330819-1330838 | MS.gene49463:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1330235 | 1332673 | 1330235 | ID=MS.gene49463 |
| chr5.1 | mRNA | 1330235 | 1332673 | 1330235 | ID=MS.gene49463.t1;Parent=MS.gene49463 |
| chr5.1 | exon | 1330235 | 1331117 | 1330235 | ID=MS.gene49463.t1.exon1;Parent=MS.gene49463.t1 |
| chr5.1 | CDS | 1330235 | 1331117 | 1330235 | ID=cds.MS.gene49463.t1;Parent=MS.gene49463.t1 |
| chr5.1 | exon | 1331552 | 1332203 | 1331552 | ID=MS.gene49463.t1.exon2;Parent=MS.gene49463.t1 |
| chr5.1 | CDS | 1331552 | 1332203 | 1331552 | ID=cds.MS.gene49463.t1;Parent=MS.gene49463.t1 |
| chr5.1 | exon | 1332634 | 1332673 | 1332634 | ID=MS.gene49463.t1.exon3;Parent=MS.gene49463.t1 |
| chr5.1 | CDS | 1332634 | 1332673 | 1332634 | ID=cds.MS.gene49463.t1;Parent=MS.gene49463.t1 |
| Gene Sequence |
| Protein sequence |
