Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49496.t1 | PNX73002.1 | 42.5 | 843 | 182 | 8 | 109 | 737 | 1 | 754 | 4.20E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49496.t1 | Q9SZL8 | 28.9 | 194 | 130 | 3 | 265 | 453 | 448 | 638 | 2.2e-15 | 85.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49496.t1 | A0A2K3L384 | 42.5 | 843 | 182 | 8 | 109 | 737 | 1 | 754 | 3.0e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49496.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49496.t1 | MTR_3g080590 | 87.097 | 155 | 20 | 0 | 1 | 155 | 1 | 155 | 5.78e-78 | 248 |
| MS.gene49496.t1 | MTR_7g446520 | 46.114 | 193 | 89 | 2 | 98 | 290 | 81 | 258 | 1.57e-44 | 164 |
| MS.gene49496.t1 | MTR_0645s0010 | 66.667 | 108 | 30 | 3 | 288 | 395 | 24 | 125 | 9.14e-35 | 129 |
| MS.gene49496.t1 | MTR_7g446480 | 53.571 | 112 | 52 | 0 | 179 | 290 | 140 | 251 | 1.96e-32 | 128 |
| MS.gene49496.t1 | MTR_7g028855 | 45.395 | 152 | 78 | 2 | 98 | 245 | 113 | 263 | 5.71e-30 | 124 |
| MS.gene49496.t1 | MTR_7g446510 | 52.679 | 112 | 53 | 0 | 179 | 290 | 155 | 266 | 8.76e-30 | 121 |
| MS.gene49496.t1 | MTR_1g070355 | 31.250 | 176 | 118 | 2 | 105 | 277 | 74 | 249 | 6.11e-20 | 94.7 |
| MS.gene49496.t1 | MTR_5g076070 | 27.869 | 183 | 117 | 3 | 85 | 264 | 45 | 215 | 1.28e-19 | 90.5 |
| MS.gene49496.t1 | MTR_6g022080 | 26.829 | 164 | 117 | 1 | 104 | 264 | 84 | 247 | 4.78e-17 | 82.0 |
| MS.gene49496.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 1.48e-16 | 75.5 |
| MS.gene49496.t1 | MTR_8g468460 | 40.000 | 100 | 57 | 2 | 309 | 408 | 9 | 105 | 2.52e-13 | 67.0 |
| MS.gene49496.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 111 | 270 | 53 | 224 | 7.87e-13 | 71.2 |
| MS.gene49496.t1 | MTR_0402s0040 | 31.250 | 176 | 112 | 7 | 108 | 278 | 29 | 200 | 1.10e-12 | 71.6 |
| MS.gene49496.t1 | MTR_6g051425 | 27.473 | 182 | 125 | 4 | 112 | 287 | 24 | 204 | 8.19e-12 | 67.8 |
| MS.gene49496.t1 | MTR_4g035820 | 28.571 | 182 | 121 | 4 | 111 | 285 | 81 | 260 | 1.81e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49496.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 1.30e-18 | 90.9 |
| MS.gene49496.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 1.39e-18 | 90.9 |
| MS.gene49496.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 1.51e-18 | 90.9 |
| MS.gene49496.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 1.60e-18 | 90.9 |
| MS.gene49496.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 1.60e-18 | 90.9 |
| MS.gene49496.t1 | AT4G38180 | 29.469 | 207 | 132 | 5 | 252 | 453 | 441 | 638 | 3.51e-18 | 90.1 |
| MS.gene49496.t1 | AT4G38180 | 30.075 | 266 | 172 | 8 | 33 | 290 | 3 | 262 | 2.85e-15 | 80.5 |
| MS.gene49496.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 288 | 499 | 452 | 656 | 2.70e-17 | 87.0 |
| MS.gene49496.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 288 | 499 | 452 | 656 | 2.70e-17 | 87.0 |
| MS.gene49496.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 288 | 499 | 452 | 656 | 2.70e-17 | 87.0 |
| MS.gene49496.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 288 | 499 | 452 | 656 | 2.70e-17 | 87.0 |
| MS.gene49496.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 288 | 499 | 452 | 656 | 2.70e-17 | 87.0 |
| MS.gene49496.t1 | AT3G22170 | 28.125 | 224 | 150 | 5 | 288 | 508 | 461 | 676 | 9.10e-17 | 85.5 |
| MS.gene49496.t1 | AT3G22170 | 28.125 | 224 | 150 | 5 | 288 | 508 | 461 | 676 | 9.10e-17 | 85.5 |
| MS.gene49496.t1 | AT2G27110 | 27.236 | 246 | 157 | 8 | 250 | 491 | 386 | 613 | 4.39e-16 | 83.2 |
| MS.gene49496.t1 | AT2G27110 | 27.236 | 246 | 157 | 8 | 250 | 491 | 386 | 613 | 4.39e-16 | 83.2 |
| MS.gene49496.t1 | AT2G27110 | 27.236 | 246 | 157 | 8 | 250 | 491 | 241 | 468 | 5.34e-16 | 82.8 |
| MS.gene49496.t1 | AT4G38170 | 26.943 | 193 | 135 | 3 | 260 | 449 | 210 | 399 | 6.90e-16 | 82.0 |
| MS.gene49496.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 8.26e-12 | 69.3 |
| MS.gene49496.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 8.26e-12 | 69.3 |
| MS.gene49496.t1 | AT1G76320 | 26.667 | 180 | 122 | 5 | 277 | 452 | 374 | 547 | 9.51e-12 | 69.3 |
| MS.gene49496.t1 | AT1G76320 | 26.667 | 180 | 122 | 5 | 277 | 452 | 374 | 547 | 9.94e-12 | 68.9 |
| MS.gene49496.t1 | AT1G76320 | 26.667 | 180 | 122 | 5 | 277 | 452 | 374 | 547 | 9.94e-12 | 68.9 |
| MS.gene49496.t1 | AT1G76320 | 26.667 | 180 | 122 | 5 | 277 | 452 | 374 | 547 | 2.52e-11 | 67.8 |
| MS.gene49496.t1 | AT4G19990 | 25.301 | 166 | 122 | 2 | 288 | 453 | 400 | 563 | 5.24e-11 | 67.0 |
| MS.gene49496.t1 | AT4G19990 | 25.301 | 166 | 122 | 2 | 288 | 453 | 400 | 563 | 5.24e-11 | 67.0 |
| MS.gene49496.t1 | AT4G19990 | 25.301 | 166 | 122 | 2 | 288 | 453 | 343 | 506 | 7.25e-11 | 66.2 |
| MS.gene49496.t1 | AT4G19990 | 25.301 | 166 | 122 | 2 | 288 | 453 | 400 | 563 | 7.33e-11 | 66.2 |
| MS.gene49496.t1 | AT4G19990 | 25.301 | 166 | 122 | 2 | 288 | 453 | 400 | 563 | 7.33e-11 | 66.2 |
| MS.gene49496.t1 | AT4G19990 | 25.301 | 166 | 122 | 2 | 288 | 453 | 400 | 563 | 7.39e-11 | 66.2 |
| MS.gene49496.t1 | AT4G19990 | 25.301 | 166 | 122 | 2 | 288 | 453 | 414 | 577 | 8.56e-11 | 66.2 |
Find 144 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGATCCACCATTATT+TGG | 0.155571 | 8.1:-33990471 | None:intergenic |
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 8.1:-33990234 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 8.1:-33989445 | None:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | 8.1:-33988146 | None:intergenic |
| CCCATAGTTTCTCAATGTTT+TGG | 0.242135 | 8.1:-33990746 | None:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | 8.1:-33988154 | None:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | 8.1:-33989698 | None:intergenic |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 8.1:-33990422 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 8.1:+33988262 | MS.gene49496:CDS |
| CAGTGTTAGAATGTGATGAT+AGG | 0.338987 | 8.1:-33990518 | None:intergenic |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 8.1:-33988256 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 8.1:+33987809 | MS.gene49496:CDS |
| ACGGCTTTGTTCGTACGATT+TGG | 0.360283 | 8.1:+33988057 | MS.gene49496:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 8.1:-33989853 | None:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 8.1:+33987802 | MS.gene49496:CDS |
| CTCGGAACATTGTGTGTTCC+AGG | 0.370631 | 8.1:-33990567 | None:intergenic |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 8.1:+33989597 | MS.gene49496:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 8.1:+33988208 | MS.gene49496:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | 8.1:+33989811 | MS.gene49496:CDS |
| CACTATGGGGTGCCAAATAA+TGG | 0.393131 | 8.1:+33990459 | MS.gene49496:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 8.1:-33989416 | None:intergenic |
| ACTGGAACACACAATGTTCC+TGG | 0.398163 | 8.1:+33990549 | MS.gene49496:CDS |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 8.1:-33989725 | None:intergenic |
| TCTAACACTGCTCTGCATAC+TGG | 0.407068 | 8.1:+33990531 | MS.gene49496:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 8.1:+33988289 | MS.gene49496:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 8.1:+33989610 | MS.gene49496:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 8.1:-33989907 | None:intergenic |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 8.1:+33990194 | MS.gene49496:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 8.1:+33989850 | MS.gene49496:CDS |
| GCAATGGTATTACACGTAAG+AGG | 0.423638 | 8.1:+33990115 | MS.gene49496:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 8.1:+33989195 | MS.gene49496:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | 8.1:-33988136 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 8.1:-33988018 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 8.1:+33988248 | MS.gene49496:CDS |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 8.1:+33989702 | MS.gene49496:CDS |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | 8.1:+33989675 | MS.gene49496:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 8.1:+33988209 | MS.gene49496:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 8.1:+33987944 | MS.gene49496:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 8.1:-33988109 | None:intergenic |
| AGTGTTAGAATGTGATGATA+GGG | 0.470693 | 8.1:-33990517 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 8.1:-33988004 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 8.1:+33989658 | MS.gene49496:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 8.1:+33987762 | MS.gene49496:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 8.1:+33989844 | MS.gene49496:CDS |
| AGTGACACTGATAGTGATAC+TGG | 0.484101 | 8.1:+33987648 | MS.gene49496:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 8.1:+33988280 | MS.gene49496:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | 8.1:+33989824 | MS.gene49496:CDS |
| TGACGAGATGTGATCACTCT+TGG | 0.498654 | 8.1:-33989482 | None:intergenic |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 8.1:+33990072 | MS.gene49496:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | 8.1:+33987910 | MS.gene49496:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 8.1:+33990351 | MS.gene49496:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 8.1:+33988311 | MS.gene49496:CDS |
| GTATCACTATGTACATCAAA+AGG | 0.509968 | 8.1:-33987531 | None:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 8.1:+33988242 | MS.gene49496:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 8.1:+33987884 | MS.gene49496:CDS |
| TTAGAACAACATCTTGTCCT+TGG | 0.513299 | 8.1:-33989796 | None:intergenic |
| TGTGATGATAGGGTAGTTGT+CGG | 0.517812 | 8.1:-33990507 | None:intergenic |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 8.1:-33989333 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 8.1:+33988312 | MS.gene49496:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 8.1:+33989449 | MS.gene49496:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | 8.1:+33987909 | MS.gene49496:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | 8.1:+33989812 | MS.gene49496:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 8.1:-33989539 | None:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | 8.1:-33989829 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 8.1:+33990195 | MS.gene49496:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 8.1:-33990495 | None:intergenic |
| AACAACGATGTTCGTACTGA+TGG | 0.541536 | 8.1:+33987690 | MS.gene49496:CDS |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 8.1:+33987960 | MS.gene49496:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 8.1:-33988099 | None:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 8.1:-33989402 | None:intergenic |
| AAGACAGTCATTGTGCAAGT+TGG | 0.550615 | 8.1:+33990397 | MS.gene49496:CDS |
| GCGAAACTTCGAGTAGTCTA+CGG | 0.551173 | 8.1:+33988038 | MS.gene49496:CDS |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 8.1:+33989499 | MS.gene49496:CDS |
| CAATGGTATTACACGTAAGA+GGG | 0.559395 | 8.1:+33990116 | MS.gene49496:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 8.1:+33989871 | MS.gene49496:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 8.1:-33989509 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 8.1:+33989879 | MS.gene49496:CDS |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | 8.1:+33987868 | MS.gene49496:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 8.1:-33989748 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 8.1:+33987726 | MS.gene49496:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 8.1:-33989394 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 8.1:+33987803 | MS.gene49496:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 8.1:+33989533 | MS.gene49496:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 8.1:+33989872 | MS.gene49496:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 8.1:-33988098 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 8.1:+33987947 | MS.gene49496:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 8.1:+33989534 | MS.gene49496:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 8.1:+33990411 | MS.gene49496:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | 8.1:+33989651 | MS.gene49496:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 8.1:+33988249 | MS.gene49496:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 8.1:+33989169 | MS.gene49496:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | 8.1:+33989652 | MS.gene49496:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.590593 | 8.1:+33989250 | MS.gene49496:CDS |
| ATGATAGGGTAGTTGTCGGA+GGG | 0.591320 | 8.1:-33990503 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 8.1:+33988294 | MS.gene49496:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 8.1:+33990417 | MS.gene49496:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 8.1:-33989401 | None:intergenic |
| TATGAGTGCGTTGAAGAATG+TGG | 0.597255 | 8.1:+33990688 | MS.gene49496:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | 8.1:+33987867 | MS.gene49496:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 8.1:+33990412 | MS.gene49496:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 8.1:-33989133 | None:intergenic |
| CGAGATGTTGAGAAAAGCAA+TGG | 0.609346 | 8.1:+33990099 | MS.gene49496:CDS |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 8.1:+33988313 | MS.gene49496:CDS |
| AAACATCGCAGTGACTATTG+TGG | 0.611836 | 8.1:+33990722 | MS.gene49496:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 8.1:+33989611 | MS.gene49496:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 8.1:+33987588 | MS.gene49496:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | 8.1:+33988344 | MS.gene49496:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 8.1:+33988170 | MS.gene49496:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 8.1:+33987593 | MS.gene49496:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | 8.1:-33989663 | None:intergenic |
| GATGATAGGGTAGTTGTCGG+AGG | 0.619255 | 8.1:-33990504 | None:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | 8.1:+33989246 | MS.gene49496:CDS |
| ACATAGTGATACAGATGAGG+TGG | 0.623452 | 8.1:+33987542 | MS.gene49496:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 8.1:+33989748 | MS.gene49496:CDS |
| ATACTCACCGATGTATAACT+CGG | 0.636787 | 8.1:-33990585 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 8.1:+33988295 | MS.gene49496:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 8.1:-33987884 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 8.1:-33987737 | None:intergenic |
| TATGGGGTGCCAAATAATGG+TGG | 0.646881 | 8.1:+33990462 | MS.gene49496:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 8.1:+33987744 | MS.gene49496:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 8.1:+33988185 | MS.gene49496:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 8.1:-33988122 | None:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 8.1:+33989532 | MS.gene49496:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 8.1:+33987745 | MS.gene49496:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 8.1:+33990075 | MS.gene49496:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 8.1:+33987707 | MS.gene49496:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 8.1:+33987589 | MS.gene49496:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 8.1:+33989873 | MS.gene49496:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 8.1:+33989414 | MS.gene49496:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 8.1:+33989758 | MS.gene49496:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 8.1:+33987948 | MS.gene49496:CDS |
| CAATGTTCCGAGTTATACAT+CGG | 0.680199 | 8.1:+33990578 | MS.gene49496:CDS |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 8.1:-33990071 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 8.1:+33989600 | MS.gene49496:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 8.1:+33989735 | MS.gene49496:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 8.1:+33987720 | MS.gene49496:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | 8.1:+33989669 | MS.gene49496:CDS |
| TGTAGACGCTTTGAACGCAG+AGG | 0.705116 | 8.1:+33989367 | MS.gene49496:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 8.1:+33987702 | MS.gene49496:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | 8.1:-33989563 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 8.1:+33987590 | MS.gene49496:CDS |
| TGTACATAGTGATACAGATG+AGG | 0.739686 | 8.1:+33987539 | MS.gene49496:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 8.1:-33989042 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 8.1:+33987824 | MS.gene49496:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAATATGCACTA+TGG | + | chr8.1:33990444-33990463 | MS.gene49496:CDS | 15.0% |
| !!! | ATTATTTTAATATGCACTAT+GGG | + | chr8.1:33990445-33990464 | MS.gene49496:CDS | 15.0% |
| !!! | TCATAAACTGTTTTAAATAT+AGG | - | chr8.1:33990673-33990692 | None:intergenic | 15.0% |
| !!! | TGAAATTGTATATGATATTT+TGG | + | chr8.1:33990000-33990019 | MS.gene49496:intron | 15.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr8.1:33988280-33988299 | MS.gene49496:CDS | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | + | chr8.1:33989195-33989214 | MS.gene49496:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | + | chr8.1:33989283-33989302 | MS.gene49496:CDS | 20.0% |
| !!! | TTATTTTAATATGCACTATG+GGG | + | chr8.1:33990446-33990465 | MS.gene49496:CDS | 20.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | - | chr8.1:33988576-33988595 | None:intergenic | 25.0% |
| ! | ATATCCACAAAAAATGACAA+GGG | - | chr8.1:33988534-33988553 | None:intergenic | 25.0% |
| ! | CAGCAAATATACTATAACAA+AGG | - | chr8.1:33990270-33990289 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr8.1:33987978-33987997 | MS.gene49496:CDS | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | + | chr8.1:33988900-33988919 | MS.gene49496:intron | 25.0% |
| ! | TATATCCACAAAAAATGACA+AGG | - | chr8.1:33988535-33988554 | None:intergenic | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | - | chr8.1:33988157-33988176 | None:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | + | chr8.1:33989306-33989325 | MS.gene49496:CDS | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | - | chr8.1:33989191-33989210 | None:intergenic | 25.0% |
| !! | TCAATGTTGATTGTGATATT+TGG | - | chr8.1:33990237-33990256 | None:intergenic | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | - | chr8.1:33989515-33989534 | None:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | + | chr8.1:33988625-33988644 | MS.gene49496:intron | 25.0% |
| !!! | TTGTTTTGATTGTTGTAGAA+TGG | + | chr8.1:33990333-33990352 | MS.gene49496:intron | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | - | chr8.1:33989516-33989535 | None:intergenic | 25.0% |
| AAAACTGATCCACCATTATT+TGG | - | chr8.1:33990474-33990493 | None:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | + | chr8.1:33988603-33988622 | MS.gene49496:intron | 30.0% | |
| AACAAATACAAGCACTAGAA+AGG | + | chr8.1:33990194-33990213 | MS.gene49496:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | + | chr8.1:33988604-33988623 | MS.gene49496:intron | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | + | chr8.1:33988313-33988332 | MS.gene49496:CDS | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | - | chr8.1:33989045-33989064 | None:intergenic | 30.0% | |
| ACAAATACAAGCACTAGAAA+GGG | + | chr8.1:33990195-33990214 | MS.gene49496:CDS | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr8.1:33988503-33988522 | MS.gene49496:intron | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr8.1:33987809-33987828 | MS.gene49496:CDS | 30.0% | |
| AGTGTTAGAATGTGATGATA+GGG | - | chr8.1:33990520-33990539 | None:intergenic | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr8.1:33988504-33988523 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr8.1:33988289-33988308 | MS.gene49496:CDS | 30.0% | |
| ATCATTCGCAACAAATTTGT+TGG | - | chr8.1:33989728-33989747 | None:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr8.1:33987802-33987821 | MS.gene49496:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | + | chr8.1:33988312-33988331 | MS.gene49496:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr8.1:33987948-33987967 | MS.gene49496:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr8.1:33988398-33988417 | MS.gene49496:intron | 30.0% | |
| GATTCATTATCAGACTCAAT+AGG | - | chr8.1:33989910-33989929 | None:intergenic | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr8.1:33988209-33988228 | MS.gene49496:CDS | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | - | chr8.1:33987534-33987553 | None:intergenic | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | + | chr8.1:33987867-33987886 | MS.gene49496:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | + | chr8.1:33989812-33989831 | MS.gene49496:CDS | 30.0% | |
| TATCCACAAAAAATGACAAG+GGG | - | chr8.1:33988533-33988552 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | chr8.1:33987868-33987887 | MS.gene49496:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr8.1:33987947-33987966 | MS.gene49496:CDS | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | - | chr8.1:33988149-33988168 | None:intergenic | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr8.1:33988507-33988526 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr8.1:33988208-33988227 | MS.gene49496:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr8.1:33987803-33987822 | MS.gene49496:CDS | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | + | chr8.1:33989811-33989830 | MS.gene49496:CDS | 30.0% | |
| TTCTAACACCACACAAAAAA+TGG | - | chr8.1:33988961-33988980 | None:intergenic | 30.0% | |
| ! | ATTTTTCATGTCCAAAGTCA+CGG | - | chr8.1:33990365-33990384 | None:intergenic | 30.0% |
| ! | TTTTGGATGTTTGTCATACA+TGG | - | chr8.1:33988651-33988670 | None:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | + | chr8.1:33988879-33988898 | MS.gene49496:intron | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | + | chr8.1:33989702-33989721 | MS.gene49496:CDS | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr8.1:33988421-33988440 | MS.gene49496:intron | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | + | chr8.1:33988221-33988240 | MS.gene49496:CDS | 30.0% |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | + | chr8.1:33988220-33988239 | MS.gene49496:CDS | 30.0% |
| !!! | TGGAACAATTGTCATTTTCA+AGG | + | chr8.1:33989270-33989289 | MS.gene49496:CDS | 30.0% |
| AAGATAAATAGCCGTCATGA+GGG | + | chr8.1:33989652-33989671 | MS.gene49496:CDS | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | - | chr8.1:33989405-33989424 | None:intergenic | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr8.1:33988262-33988281 | MS.gene49496:CDS | 35.0% | |
| ATACTCACCGATGTATAACT+CGG | - | chr8.1:33990588-33990607 | None:intergenic | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr8.1:33988125-33988144 | None:intergenic | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | - | chr8.1:33989701-33989720 | None:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | - | chr8.1:33989419-33989438 | None:intergenic | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | + | chr8.1:33987910-33987929 | MS.gene49496:CDS | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | - | chr8.1:33989336-33989355 | None:intergenic | 35.0% | |
| CAATGGTATTACACGTAAGA+GGG | + | chr8.1:33990116-33990135 | MS.gene49496:CDS | 35.0% | |
| CAATGTTCCGAGTTATACAT+CGG | + | chr8.1:33990578-33990597 | MS.gene49496:CDS | 35.0% | |
| CAGTGTTAGAATGTGATGAT+AGG | - | chr8.1:33990521-33990540 | None:intergenic | 35.0% | |
| CTGAAAAGTTTGAATCTGAG+TGG | + | chr8.1:33988840-33988859 | MS.gene49496:intron | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | - | chr8.1:33989404-33989423 | None:intergenic | 35.0% | |
| GAAGCTTCAAAGATATTCAC+CGG | + | chr8.1:33989169-33989188 | MS.gene49496:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | + | chr8.1:33988714-33988733 | MS.gene49496:intron | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | + | chr8.1:33988311-33988330 | MS.gene49496:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr8.1:33987944-33987963 | MS.gene49496:CDS | 35.0% | |
| GTATGACAAACATCCAAAAG+CGG | + | chr8.1:33988652-33988671 | MS.gene49496:intron | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | + | chr8.1:33987726-33987745 | MS.gene49496:CDS | 35.0% | |
| TAACACCATACCCAACATTA+TGG | - | chr8.1:33990425-33990444 | None:intergenic | 35.0% | |
| TAAGATAAATAGCCGTCATG+AGG | + | chr8.1:33989651-33989670 | MS.gene49496:CDS | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | - | chr8.1:33988139-33988158 | None:intergenic | 35.0% | |
| TATCATTACTCATAGACAGC+TGG | - | chr8.1:33990038-33990057 | None:intergenic | 35.0% | |
| TGTACATAGTGATACAGATG+AGG | + | chr8.1:33987539-33987558 | MS.gene49496:CDS | 35.0% | |
| TTAGAACAACATCTTGTCCT+TGG | - | chr8.1:33989799-33989818 | None:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | + | chr8.1:33989449-33989468 | MS.gene49496:CDS | 35.0% |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr8.1:33987589-33987608 | MS.gene49496:CDS | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr8.1:33988458-33988477 | MS.gene49496:intron | 35.0% |
| ! | CAAGTTGGAACCATAATGTT+GGG | + | chr8.1:33990412-33990431 | MS.gene49496:CDS | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | - | chr8.1:33988842-33988861 | None:intergenic | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr8.1:33988427-33988446 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr8.1:33988170-33988189 | MS.gene49496:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | + | chr8.1:33989597-33989616 | MS.gene49496:CDS | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | + | chr8.1:33988916-33988935 | MS.gene49496:intron | 35.0% |
| ! | TTTATCGGTTGAAGAGAATG+TGG | + | chr8.1:33988915-33988934 | MS.gene49496:intron | 35.0% |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | + | chr8.1:33988349-33988368 | MS.gene49496:intron | 35.0% |
| ! | TTTTGTGGATATAACCACCA+TGG | + | chr8.1:33988542-33988561 | MS.gene49496:intron | 35.0% |
| ! | TTTTTCATGTCCAAAGTCAC+GGG | - | chr8.1:33990364-33990383 | None:intergenic | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | chr8.1:33987960-33987979 | MS.gene49496:CDS | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | + | chr8.1:33989611-33989630 | MS.gene49496:CDS | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | - | chr8.1:33988562-33988581 | None:intergenic | 35.0% |
| !! | TGCTGAAAATTGTGTTGCTT+TGG | + | chr8.1:33990285-33990304 | MS.gene49496:intron | 35.0% |
| !!! | AAACCCCTTGTCATTTTTTG+TGG | + | chr8.1:33988527-33988546 | MS.gene49496:intron | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr8.1:33988420-33988439 | MS.gene49496:intron | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | + | chr8.1:33988230-33988249 | MS.gene49496:CDS | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | - | chr8.1:33989777-33989796 | None:intergenic | 35.0% |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | - | chr8.1:33988833-33988852 | None:intergenic | 35.0% |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | - | chr8.1:33989776-33989795 | None:intergenic | 35.0% |
| AAAAGCGGTGATTACTGATG+GGG | + | chr8.1:33988667-33988686 | MS.gene49496:intron | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | + | chr8.1:33989532-33989551 | MS.gene49496:CDS | 40.0% | |
| AAACATCGCAGTGACTATTG+TGG | + | chr8.1:33990722-33990741 | MS.gene49496:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | + | chr8.1:33989533-33989552 | MS.gene49496:CDS | 40.0% | |
| AAATGGACATGACGAGGATA+AGG | + | chr8.1:33989675-33989694 | MS.gene49496:CDS | 40.0% | |
| AACAACGATGTTCGTACTGA+TGG | + | chr8.1:33987690-33987709 | MS.gene49496:CDS | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr8.1:33988112-33988131 | None:intergenic | 40.0% | |
| AAGACAGTCATTGTGCAAGT+TGG | + | chr8.1:33990397-33990416 | MS.gene49496:CDS | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr8.1:33987744-33987763 | MS.gene49496:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | - | chr8.1:33989566-33989585 | None:intergenic | 40.0% | |
| ACATAGTGATACAGATGAGG+TGG | + | chr8.1:33987542-33987561 | MS.gene49496:CDS | 40.0% | |
| AGAACGACATCAATCTGTGA+AGG | + | chr8.1:33988977-33988996 | MS.gene49496:intron | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | + | chr8.1:33989204-33989223 | MS.gene49496:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr8.1:33988102-33988121 | None:intergenic | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | + | chr8.1:33988846-33988865 | MS.gene49496:intron | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr8.1:33987745-33987764 | MS.gene49496:CDS | 40.0% | |
| CAAAAGCGGTGATTACTGAT+GGG | + | chr8.1:33988666-33988685 | MS.gene49496:intron | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr8.1:33987762-33987781 | MS.gene49496:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | + | chr8.1:33989246-33989265 | MS.gene49496:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr8.1:33987740-33987759 | None:intergenic | 40.0% | |
| CGAGATGTTGAGAAAAGCAA+TGG | + | chr8.1:33990099-33990118 | MS.gene49496:CDS | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr8.1:33988021-33988040 | None:intergenic | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | - | chr8.1:33989448-33989467 | None:intergenic | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | + | chr8.1:33987909-33987928 | MS.gene49496:CDS | 40.0% | |
| GCAATGGTATTACACGTAAG+AGG | + | chr8.1:33990115-33990134 | MS.gene49496:CDS | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | - | chr8.1:33989397-33989416 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr8.1:33988101-33988120 | None:intergenic | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | + | chr8.1:33989779-33989798 | MS.gene49496:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr8.1:33987824-33987843 | MS.gene49496:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | + | chr8.1:33988847-33988866 | MS.gene49496:intron | 40.0% | |
| TATCAGTATCAGCCTTACCT+TGG | - | chr8.1:33988364-33988383 | None:intergenic | 40.0% | |
| TATGAGTGCGTTGAAGAATG+TGG | + | chr8.1:33990688-33990707 | MS.gene49496:CDS | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | + | chr8.1:33988883-33988902 | MS.gene49496:intron | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr8.1:33988259-33988278 | None:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | + | chr8.1:33989414-33989433 | MS.gene49496:CDS | 40.0% | |
| TGGAACCATAATGTTGGGTA+TGG | + | chr8.1:33990417-33990436 | MS.gene49496:CDS | 40.0% | |
| TGTGATGATAGGGTAGTTGT+CGG | - | chr8.1:33990510-33990529 | None:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | - | chr8.1:33989512-33989531 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr8.1:33988007-33988026 | None:intergenic | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | + | chr8.1:33988882-33988901 | MS.gene49496:intron | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr8.1:33988438-33988457 | MS.gene49496:intron | 40.0% | |
| ! | AGTGACACTGATAGTGATAC+TGG | + | chr8.1:33987648-33987667 | MS.gene49496:CDS | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr8.1:33987590-33987609 | MS.gene49496:CDS | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr8.1:33987588-33987607 | MS.gene49496:CDS | 40.0% |
| ! | GCAAGTTGGAACCATAATGT+TGG | + | chr8.1:33990411-33990430 | MS.gene49496:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+AGG | + | chr8.1:33988344-33988363 | MS.gene49496:CDS | 40.0% |
| ! | TTACCCACCTGTTGTTTGAT+AGG | - | chr8.1:33988889-33988908 | None:intergenic | 40.0% |
| !! | AAATGGTTGTTTCTCCATGG+TGG | - | chr8.1:33988559-33988578 | None:intergenic | 40.0% |
| !! | GATTATAAGGAGGCTCTAGA+AGG | + | chr8.1:33989610-33989629 | MS.gene49496:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr8.1:33988233-33988252 | MS.gene49496:CDS | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | + | chr8.1:33988950-33988969 | MS.gene49496:intron | 40.0% |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | + | chr8.1:33988229-33988248 | MS.gene49496:CDS | 40.0% |
| AATAGCCGTCATGAGGGAAA+TGG | + | chr8.1:33989658-33989677 | MS.gene49496:CDS | 45.0% | |
| AATGACCATGTTTCGTCGAG+GGG | + | chr8.1:33989534-33989553 | MS.gene49496:CDS | 45.0% | |
| ACACCAATTCCAGCAAGTTC+TGG | - | chr8.1:33989856-33989875 | None:intergenic | 45.0% | |
| ACTGGAACACACAATGTTCC+TGG | + | chr8.1:33990549-33990568 | MS.gene49496:CDS | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | - | chr8.1:33988753-33988772 | None:intergenic | 45.0% | |
| ATGATAGGGTAGTTGTCGGA+GGG | - | chr8.1:33990506-33990525 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | + | chr8.1:33988294-33988313 | MS.gene49496:CDS | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | - | chr8.1:33988728-33988747 | None:intergenic | 45.0% | |
| CACTCTGTAGCAGTGTCAAA+TGG | + | chr8.1:33990072-33990091 | MS.gene49496:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | - | chr8.1:33989666-33989685 | None:intergenic | 45.0% | |
| CATTTGACACTGCTACAGAG+TGG | - | chr8.1:33990074-33990093 | None:intergenic | 45.0% | |
| CCAAAAGCGGTGATTACTGA+TGG | + | chr8.1:33988665-33988684 | MS.gene49496:intron | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | chr8.1:33987887-33987906 | None:intergenic | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | - | chr8.1:33989751-33989770 | None:intergenic | 45.0% | |
| GAAATCCTGGGCACACAATA+CGG | + | chr8.1:33989824-33989843 | MS.gene49496:CDS | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | + | chr8.1:33989250-33989269 | MS.gene49496:CDS | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | + | chr8.1:33987720-33987739 | MS.gene49496:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | + | chr8.1:33989600-33989619 | MS.gene49496:CDS | 45.0% | |
| GCGAAACTTCGAGTAGTCTA+CGG | + | chr8.1:33988038-33988057 | MS.gene49496:CDS | 45.0% | |
| GTCAATGCAGTTGTCAGCAT+AGG | - | chr8.1:33989136-33989155 | None:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | + | chr8.1:33989872-33989891 | MS.gene49496:CDS | 45.0% | |
| TCTAACACTGCTCTGCATAC+TGG | + | chr8.1:33990531-33990550 | MS.gene49496:CDS | 45.0% | |
| TCTGTAGCAGTGTCAAATGG+TGG | + | chr8.1:33990075-33990094 | MS.gene49496:CDS | 45.0% | |
| TGACGAGATGTGATCACTCT+TGG | - | chr8.1:33989485-33989504 | None:intergenic | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | + | chr8.1:33989873-33989892 | MS.gene49496:CDS | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | + | chr8.1:33989735-33989754 | MS.gene49496:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr8.1:33988295-33988314 | MS.gene49496:CDS | 45.0% | |
| ! | CACTATGGGGTGCCAAATAA+TGG | + | chr8.1:33990459-33990478 | MS.gene49496:CDS | 45.0% |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | chr8.1:33987884-33987903 | MS.gene49496:CDS | 45.0% |
| ! | CCACTGATGGTGAATGTCAA+AGG | + | chr8.1:33989748-33989767 | MS.gene49496:CDS | 45.0% |
| ! | CCATCAGTAATCACCGCTTT+TGG | - | chr8.1:33988668-33988687 | None:intergenic | 45.0% |
| ! | TATGGGGTGCCAAATAATGG+TGG | + | chr8.1:33990462-33990481 | MS.gene49496:CDS | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr8.1:33987593-33987612 | MS.gene49496:CDS | 45.0% |
| !! | ACGGCTTTGTTCGTACGATT+TGG | + | chr8.1:33988057-33988076 | MS.gene49496:CDS | 45.0% |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | + | chr8.1:33989850-33989869 | MS.gene49496:CDS | 45.0% |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | - | chr8.1:33989030-33989049 | None:intergenic | 45.0% |
| AATGGTGTGACCCGTGACTT+TGG | + | chr8.1:33990351-33990370 | MS.gene49496:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | + | chr8.1:33989027-33989046 | MS.gene49496:CDS | 50.0% | |
| CTCGGAACATTGTGTGTTCC+AGG | - | chr8.1:33990570-33990589 | None:intergenic | 50.0% | |
| GATGATAGGGTAGTTGTCGG+AGG | - | chr8.1:33990507-33990526 | None:intergenic | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr8.1:33988185-33988204 | MS.gene49496:CDS | 50.0% | |
| GTAGTTGTCGGAGGGAATTG+TGG | - | chr8.1:33990498-33990517 | None:intergenic | 50.0% | |
| GTCTGAAGATCAAGGGGAGA+AGG | + | chr8.1:33989879-33989898 | MS.gene49496:CDS | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | + | chr8.1:33989499-33989518 | MS.gene49496:CDS | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | + | chr8.1:33989669-33989688 | MS.gene49496:CDS | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | chr8.1:33987702-33987721 | MS.gene49496:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | + | chr8.1:33989871-33989890 | MS.gene49496:CDS | 50.0% |
| ! | TGTAGACGCTTTGAACGCAG+AGG | + | chr8.1:33989367-33989386 | MS.gene49496:CDS | 50.0% |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | + | chr8.1:33989758-33989777 | MS.gene49496:CDS | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr8.1:33988248-33988267 | MS.gene49496:CDS | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | - | chr8.1:33989542-33989561 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr8.1:33988249-33988268 | MS.gene49496:CDS | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | - | chr8.1:33988745-33988764 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr8.1:33988242-33988261 | MS.gene49496:CDS | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | chr8.1:33987707-33987726 | MS.gene49496:CDS | 55.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | - | chr8.1:33989832-33989851 | None:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | + | chr8.1:33989844-33989863 | MS.gene49496:CDS | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | + | chr8.1:33988732-33988751 | MS.gene49496:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 33987504 | 33990757 | 33987504 | ID=MS.gene49496 |
| chr8.1 | mRNA | 33987504 | 33990757 | 33987504 | ID=MS.gene49496.t1;Parent=MS.gene49496 |
| chr8.1 | exon | 33987504 | 33988365 | 33987504 | ID=MS.gene49496.t1.exon1;Parent=MS.gene49496.t1 |
| chr8.1 | CDS | 33987504 | 33988365 | 33987504 | ID=cds.MS.gene49496.t1;Parent=MS.gene49496.t1 |
| chr8.1 | exon | 33989002 | 33989942 | 33989002 | ID=MS.gene49496.t1.exon2;Parent=MS.gene49496.t1 |
| chr8.1 | CDS | 33989002 | 33989942 | 33989002 | ID=cds.MS.gene49496.t1;Parent=MS.gene49496.t1 |
| chr8.1 | exon | 33990039 | 33990260 | 33990039 | ID=MS.gene49496.t1.exon3;Parent=MS.gene49496.t1 |
| chr8.1 | CDS | 33990039 | 33990260 | 33990039 | ID=cds.MS.gene49496.t1;Parent=MS.gene49496.t1 |
| chr8.1 | exon | 33990351 | 33990599 | 33990351 | ID=MS.gene49496.t1.exon4;Parent=MS.gene49496.t1 |
| chr8.1 | CDS | 33990351 | 33990599 | 33990351 | ID=cds.MS.gene49496.t1;Parent=MS.gene49496.t1 |
| chr8.1 | exon | 33990686 | 33990757 | 33990686 | ID=MS.gene49496.t1.exon5;Parent=MS.gene49496.t1 |
| chr8.1 | CDS | 33990686 | 33990757 | 33990686 | ID=cds.MS.gene49496.t1;Parent=MS.gene49496.t1 |
| Gene Sequence |
| Protein sequence |
