Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49587.t1 | XP_024629942.1 | 93.3 | 194 | 13 | 0 | 57 | 250 | 1 | 194 | 1.70E-98 | 369 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49587.t1 | Q9SZL8 | 34.0 | 191 | 121 | 4 | 63 | 249 | 70 | 259 | 1.2e-23 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49587.t1 | G7KZB3 | 80.9 | 178 | 16 | 1 | 57 | 234 | 1 | 160 | 5.3e-73 | 283.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49587.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49587.t1 | MTR_7g074790 | 80.899 | 178 | 16 | 1 | 57 | 234 | 1 | 160 | 2.82e-101 | 294 |
| MS.gene49587.t1 | MTR_5g039760 | 56.410 | 195 | 60 | 2 | 57 | 250 | 1 | 171 | 4.63e-69 | 211 |
| MS.gene49587.t1 | MTR_7g061980 | 60.504 | 119 | 47 | 0 | 57 | 175 | 1 | 119 | 4.27e-45 | 147 |
| MS.gene49587.t1 | MTR_0402s0040 | 39.227 | 181 | 105 | 4 | 66 | 243 | 26 | 204 | 1.36e-31 | 121 |
| MS.gene49587.t1 | MTR_4g102720 | 32.353 | 170 | 81 | 2 | 62 | 231 | 3 | 138 | 2.23e-24 | 97.4 |
| MS.gene49587.t1 | MTR_6g051425 | 26.804 | 194 | 130 | 5 | 65 | 248 | 13 | 204 | 6.11e-18 | 82.0 |
| MS.gene49587.t1 | MTR_0558s0020 | 28.169 | 213 | 130 | 5 | 58 | 250 | 31 | 240 | 6.69e-18 | 81.3 |
| MS.gene49587.t1 | MTR_4g069880 | 54.545 | 66 | 30 | 0 | 57 | 122 | 1 | 66 | 2.21e-17 | 74.3 |
| MS.gene49587.t1 | MTR_5g015480 | 35.294 | 153 | 88 | 4 | 66 | 215 | 56 | 200 | 1.65e-16 | 77.0 |
| MS.gene49587.t1 | MTR_1g083640 | 26.291 | 213 | 134 | 5 | 58 | 250 | 46 | 255 | 2.52e-16 | 77.0 |
| MS.gene49587.t1 | MTR_2g014100 | 26.667 | 210 | 131 | 5 | 58 | 247 | 39 | 245 | 3.96e-16 | 75.9 |
| MS.gene49587.t1 | MTR_1g019850 | 33.333 | 141 | 85 | 3 | 59 | 197 | 63 | 196 | 3.68e-15 | 72.8 |
| MS.gene49587.t1 | MTR_2g099430 | 41.837 | 98 | 53 | 3 | 81 | 175 | 16 | 112 | 1.46e-13 | 65.9 |
| MS.gene49587.t1 | MTR_2g098880 | 36.585 | 123 | 67 | 4 | 53 | 168 | 48 | 166 | 1.42e-12 | 65.9 |
| MS.gene49587.t1 | MTR_2g098880 | 36.585 | 123 | 67 | 4 | 53 | 168 | 60 | 178 | 1.67e-12 | 65.9 |
| MS.gene49587.t1 | MTR_6g022080 | 28.947 | 152 | 103 | 4 | 72 | 219 | 91 | 241 | 4.38e-12 | 64.3 |
| MS.gene49587.t1 | MTR_7g113010 | 36.923 | 130 | 60 | 4 | 66 | 190 | 457 | 569 | 4.41e-12 | 65.9 |
| MS.gene49587.t1 | MTR_8g446020 | 26.904 | 197 | 114 | 5 | 58 | 250 | 30 | 200 | 1.73e-11 | 62.8 |
| MS.gene49587.t1 | MTR_5g076070 | 26.708 | 161 | 115 | 2 | 68 | 225 | 55 | 215 | 1.76e-11 | 63.2 |
| MS.gene49587.t1 | MTR_1g070355 | 26.667 | 165 | 116 | 3 | 71 | 231 | 79 | 242 | 2.53e-11 | 63.5 |
| MS.gene49587.t1 | MTR_2g070590 | 36.538 | 104 | 62 | 3 | 66 | 166 | 17 | 119 | 4.05e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49587.t1 | AT4G38180 | 34.031 | 191 | 121 | 4 | 63 | 249 | 70 | 259 | 1.39e-25 | 105 |
| MS.gene49587.t1 | AT4G15090 | 28.634 | 227 | 151 | 7 | 32 | 249 | 11 | 235 | 8.14e-16 | 77.0 |
| MS.gene49587.t1 | AT4G15090 | 28.634 | 227 | 151 | 7 | 32 | 249 | 11 | 235 | 8.14e-16 | 77.0 |
| MS.gene49587.t1 | AT4G15090 | 28.634 | 227 | 151 | 7 | 32 | 249 | 11 | 235 | 8.14e-16 | 77.0 |
| MS.gene49587.t1 | AT4G15090 | 28.634 | 227 | 151 | 7 | 32 | 249 | 11 | 235 | 8.14e-16 | 77.0 |
| MS.gene49587.t1 | AT4G15090 | 28.634 | 227 | 151 | 7 | 32 | 249 | 11 | 235 | 8.14e-16 | 77.0 |
| MS.gene49587.t1 | AT5G28530 | 26.347 | 167 | 118 | 2 | 66 | 227 | 55 | 221 | 1.02e-13 | 70.9 |
| MS.gene49587.t1 | AT5G28530 | 26.347 | 167 | 118 | 2 | 66 | 227 | 55 | 221 | 1.02e-13 | 70.9 |
| MS.gene49587.t1 | AT5G28530 | 26.347 | 167 | 118 | 2 | 66 | 227 | 55 | 221 | 1.10e-13 | 70.9 |
| MS.gene49587.t1 | AT5G28530 | 26.347 | 167 | 118 | 2 | 66 | 227 | 55 | 221 | 1.29e-13 | 70.5 |
| MS.gene49587.t1 | AT5G28530 | 26.347 | 167 | 118 | 2 | 66 | 227 | 55 | 221 | 1.39e-13 | 70.5 |
Find 46 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACACTTTCAAGTGAAAA+TGG | 0.237644 | 5.1:+29011839 | MS.gene49587:CDS |
| ACCTGTCAGGTACCTTCATT+TGG | 0.311547 | 5.1:+29011546 | MS.gene49587:intron |
| TGGTCGATGACTCTGGATTA+AGG | 0.372417 | 5.1:+29011981 | MS.gene49587:CDS |
| CCTGTCAGGTACCTTCATTT+GGG | 0.381495 | 5.1:+29011547 | MS.gene49587:intron |
| TGACTTCTTCAAATGATGAT+TGG | 0.385489 | 5.1:+29011579 | MS.gene49587:CDS |
| TCGTCCGTCGCTTGATAGTC+TGG | 0.388661 | 5.1:+29011031 | MS.gene49587:CDS |
| GGAAGGAATACGGAAGAAAA+AGG | 0.394338 | 5.1:+29011754 | MS.gene49587:CDS |
| TCAAATTTCATTCCATGTCT+TGG | 0.397028 | 5.1:-29011605 | None:intergenic |
| CCTCCGATGACCACCTCTGC+CGG | 0.401152 | 5.1:+29011007 | MS.gene49587:CDS |
| TTCAAGTGAAAATGGAAAGT+TGG | 0.416461 | 5.1:+29011847 | MS.gene49587:CDS |
| ATGTAGGTTTGTTTGTTGTA+AGG | 0.436082 | 5.1:+29011733 | MS.gene49587:CDS |
| TATGCTTTACGTGAGGGCTT+CGG | 0.441084 | 5.1:+29011662 | MS.gene49587:CDS |
| TTAGAGTACGCTTTACAAAC+AGG | 0.450669 | 5.1:+29011687 | MS.gene49587:CDS |
| TCTCTCGATTTAGTAGATCA+TGG | 0.467068 | 5.1:-29011898 | None:intergenic |
| CTCCGATGACCACCTCTGCC+GGG | 0.481857 | 5.1:+29011008 | MS.gene49587:CDS |
| ATTGATATGGTCGATGACTC+TGG | 0.485306 | 5.1:+29011974 | MS.gene49587:CDS |
| AGGTTTGTTTGTTGTAAGGA+AGG | 0.486878 | 5.1:+29011737 | MS.gene49587:CDS |
| TTTGTTGTAAGGAAGGAATA+CGG | 0.490669 | 5.1:+29011744 | MS.gene49587:CDS |
| ACGTTAGTGTATCGTCATGT+AGG | 0.496645 | 5.1:+29011717 | MS.gene49587:CDS |
| CTTGCTTATGCTTTACGTGA+GGG | 0.500228 | 5.1:+29011656 | MS.gene49587:CDS |
| AGACAAAGAAGTATGGTGTA+TGG | 0.509015 | 5.1:+29012100 | MS.gene49587:CDS |
| ACAAGCATATGAGATTGATA+TGG | 0.513242 | 5.1:+29011961 | MS.gene49587:CDS |
| AAGGATAAATGTGCATATGA+AGG | 0.516778 | 5.1:+29011773 | MS.gene49587:CDS |
| CTCTCGATTTAGTAGATCAT+GGG | 0.519266 | 5.1:-29011897 | None:intergenic |
| CATGTCAAATACCCAAATGA+AGG | 0.538422 | 5.1:-29011558 | None:intergenic |
| AGCGACGGACGACCCGGCAG+AGG | 0.541245 | 5.1:-29011020 | None:intergenic |
| CTATCAAGCGACGGACGACC+CGG | 0.546857 | 5.1:-29011026 | None:intergenic |
| CAACTTATGAGCACACATGC+AGG | 0.548940 | 5.1:+29012019 | MS.gene49587:CDS |
| TCTTGCTTATGCTTTACGTG+AGG | 0.552494 | 5.1:+29011655 | MS.gene49587:CDS |
| GATTTAGTAGATCATGGGTA+TGG | 0.554426 | 5.1:-29011892 | None:intergenic |
| GAAATTTGACACTAGAGAAG+AGG | 0.556802 | 5.1:+29011619 | MS.gene49587:CDS |
| GACGGACGACCCGGCAGAGG+TGG | 0.564168 | 5.1:-29011017 | None:intergenic |
| GCAGGGCATAGCGCTAATGT+TGG | 0.568818 | 5.1:+29012037 | MS.gene49587:CDS |
| GACCCGGCAGAGGTGGTCAT+CGG | 0.580561 | 5.1:-29011010 | None:intergenic |
| GATGATTGGAAGCCAAGACA+TGG | 0.587035 | 5.1:+29011593 | MS.gene49587:CDS |
| TCACCGCTGTTGCTTTGAAG+TGG | 0.594928 | 5.1:-29010954 | None:intergenic |
| AACTTATGAGCACACATGCA+GGG | 0.596381 | 5.1:+29012020 | MS.gene49587:CDS |
| GAACGCATGAAAACTAGTTG+AGG | 0.616042 | 5.1:-29010983 | None:intergenic |
| CGCTAATGTTGGATTTACAG+AGG | 0.620951 | 5.1:+29012048 | MS.gene49587:CDS |
| CCGGCAGAGGTGGTCATCGG+AGG | 0.621382 | 5.1:-29011007 | None:intergenic |
| TGACTCTGGATTAAGGCAGA+AGG | 0.626414 | 5.1:+29011988 | MS.gene49587:CDS |
| AGTATGGTGTATGGTGACGC+TGG | 0.653676 | 5.1:+29012109 | MS.gene49587:CDS |
| TAATGTTGGATTTACAGAGG+TGG | 0.672534 | 5.1:+29012051 | MS.gene49587:CDS |
| TTGCCACTTCAAAGCAACAG+CGG | 0.681368 | 5.1:+29010951 | MS.gene49587:CDS |
| GATGCCAGACTATCAAGCGA+CGG | 0.699838 | 5.1:-29011035 | None:intergenic |
| GAAGTGGCAAGAAGAAAGAG+CGG | 0.703587 | 5.1:-29010938 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAGATTTTAAGAAATTTA+GGG | + | chr5.1:29011220-29011239 | MS.gene49587:intron | 10.0% |
| !! | ACCAAAATCAAAATTAAAAT+AGG | + | chr5.1:29011136-29011155 | MS.gene49587:intron | 15.0% |
| !!! | GATTAGATTTTAAGAAATTT+AGG | + | chr5.1:29011219-29011238 | MS.gene49587:intron | 15.0% |
| !!! | TCCTATTTTAATTTTGATTT+TGG | - | chr5.1:29011140-29011159 | None:intergenic | 15.0% |
| !!! | ATGATGGAAAAAAAAAGATA+AGG | - | chr5.1:29011081-29011100 | None:intergenic | 20.0% |
| !!! | GAAATTTAGGGTTTTATTTT+AGG | + | chr5.1:29011232-29011251 | MS.gene49587:intron | 20.0% |
| ! | AAATAAAAGAGGTAAGAACA+AGG | - | chr5.1:29011526-29011545 | None:intergenic | 25.0% |
| ! | AGCTAAACATTAGATGAATT+AGG | + | chr5.1:29011326-29011345 | MS.gene49587:intron | 25.0% |
| ! | CATAACTATTCAAAAGATGA+TGG | - | chr5.1:29011097-29011116 | None:intergenic | 25.0% |
| ! | TAATCCTACAGAATTGAAAT+TGG | - | chr5.1:29011204-29011223 | None:intergenic | 25.0% |
| ! | TACAAAAAGACAAAGAAGTA+TGG | + | chr5.1:29012093-29012112 | MS.gene49587:CDS | 25.0% |
| ! | TTAACAATACATGCAAATGA+AGG | - | chr5.1:29011487-29011506 | None:intergenic | 25.0% |
| !! | AGAATTGAAATTGGTTCAAA+AGG | - | chr5.1:29011195-29011214 | None:intergenic | 25.0% |
| !! | ATTACACTTTCAAGTGAAAA+TGG | + | chr5.1:29011839-29011858 | MS.gene49587:CDS | 25.0% |
| !! | CATCATCTTTTGAATAGTTA+TGG | + | chr5.1:29011095-29011114 | MS.gene49587:intron | 25.0% |
| !!! | GTAAATATGCTCTGTTTTTT+AGG | + | chr5.1:29011279-29011298 | MS.gene49587:intron | 25.0% |
| AAGGATAAATGTGCATATGA+AGG | + | chr5.1:29011773-29011792 | MS.gene49587:CDS | 30.0% | |
| ACAAGCATATGAGATTGATA+TGG | + | chr5.1:29011961-29011980 | MS.gene49587:CDS | 30.0% | |
| GGAATAACTACACTTGATTA+AGG | + | chr5.1:29011157-29011176 | MS.gene49587:intron | 30.0% | |
| GTGCATATGAAGGAAAAATT+CGG | + | chr5.1:29011783-29011802 | MS.gene49587:CDS | 30.0% | |
| TCAAATTTCATTCCATGTCT+TGG | - | chr5.1:29011608-29011627 | None:intergenic | 30.0% | |
| TGAACCAATTTCAATTCTGT+AGG | + | chr5.1:29011197-29011216 | MS.gene49587:intron | 30.0% | |
| TGACTTCTTCAAATGATGAT+TGG | + | chr5.1:29011579-29011598 | MS.gene49587:CDS | 30.0% | |
| TTCAAGTGAAAATGGAAAGT+TGG | + | chr5.1:29011847-29011866 | MS.gene49587:CDS | 30.0% | |
| ! | TTTGTTGTAAGGAAGGAATA+CGG | + | chr5.1:29011744-29011763 | MS.gene49587:CDS | 30.0% |
| !! | ATGTAGGTTTGTTTGTTGTA+AGG | + | chr5.1:29011733-29011752 | MS.gene49587:CDS | 30.0% |
| ACCTGACAGGTAAATAAAAG+AGG | - | chr5.1:29011537-29011556 | None:intergenic | 35.0% | |
| ATTGAAGTAAACCCATTGCA+AGG | + | chr5.1:29011255-29011274 | MS.gene49587:intron | 35.0% | |
| CATGTCAAATACCCAAATGA+AGG | - | chr5.1:29011561-29011580 | None:intergenic | 35.0% | |
| CTCTCGATTTAGTAGATCAT+GGG | - | chr5.1:29011900-29011919 | None:intergenic | 35.0% | |
| GAAATTTGACACTAGAGAAG+AGG | + | chr5.1:29011619-29011638 | MS.gene49587:CDS | 35.0% | |
| GATTTAGTAGATCATGGGTA+TGG | - | chr5.1:29011895-29011914 | None:intergenic | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | + | chr5.1:29012051-29012070 | MS.gene49587:CDS | 35.0% | |
| TATGAAGGAAAAATTCGGAG+AGG | + | chr5.1:29011788-29011807 | MS.gene49587:CDS | 35.0% | |
| TCTCTCGATTTAGTAGATCA+TGG | - | chr5.1:29011901-29011920 | None:intergenic | 35.0% | |
| TTAGAGTACGCTTTACAAAC+AGG | + | chr5.1:29011687-29011706 | MS.gene49587:CDS | 35.0% | |
| TTGAAGTAAACCCATTGCAA+GGG | + | chr5.1:29011256-29011275 | MS.gene49587:intron | 35.0% | |
| ! | AGACAAAGAAGTATGGTGTA+TGG | + | chr5.1:29012100-29012119 | MS.gene49587:CDS | 35.0% |
| !! | ACCTCTTTTATTTACCTGTC+AGG | + | chr5.1:29011533-29011552 | MS.gene49587:intron | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+AGG | + | chr5.1:29011737-29011756 | MS.gene49587:CDS | 35.0% |
| AACTTATGAGCACACATGCA+GGG | + | chr5.1:29012020-29012039 | MS.gene49587:CDS | 40.0% | |
| ACGTTAGTGTATCGTCATGT+AGG | + | chr5.1:29011717-29011736 | MS.gene49587:CDS | 40.0% | |
| AGCATATTTACCCCTTGCAA+TGG | - | chr5.1:29011270-29011289 | None:intergenic | 40.0% | |
| ATTGATATGGTCGATGACTC+TGG | + | chr5.1:29011974-29011993 | MS.gene49587:CDS | 40.0% | |
| ATTTGGTCTGATGTCTGAGT+AGG | + | chr5.1:29011459-29011478 | MS.gene49587:intron | 40.0% | |
| CGCTAATGTTGGATTTACAG+AGG | + | chr5.1:29012048-29012067 | MS.gene49587:CDS | 40.0% | |
| CTGTTTGTCTGTCATATCAG+TGG | + | chr5.1:29011425-29011444 | MS.gene49587:intron | 40.0% | |
| CTTGCTTATGCTTTACGTGA+GGG | + | chr5.1:29011656-29011675 | MS.gene49587:CDS | 40.0% | |
| GAACGCATGAAAACTAGTTG+AGG | - | chr5.1:29010986-29011005 | None:intergenic | 40.0% | |
| GCATATTTACCCCTTGCAAT+GGG | - | chr5.1:29011269-29011288 | None:intergenic | 40.0% | |
| GGAAGGAATACGGAAGAAAA+AGG | + | chr5.1:29011754-29011773 | MS.gene49587:CDS | 40.0% | |
| TCTTGCTTATGCTTTACGTG+AGG | + | chr5.1:29011655-29011674 | MS.gene49587:CDS | 40.0% | |
| TGAAGTAAACCCATTGCAAG+GGG | + | chr5.1:29011257-29011276 | MS.gene49587:intron | 40.0% | |
| TTTGTCTGTCATATCAGTGG+TGG | + | chr5.1:29011428-29011447 | MS.gene49587:intron | 40.0% | |
| ! | GCAGGTTAGAACTTCACTTT+TGG | + | chr5.1:29011382-29011401 | MS.gene49587:intron | 40.0% |
| !! | AACAAGGAGTGTCACTAAAC+AGG | - | chr5.1:29011510-29011529 | None:intergenic | 40.0% |
| ACCTGTCAGGTACCTTCATT+TGG | + | chr5.1:29011546-29011565 | MS.gene49587:intron | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr5.1:29012019-29012038 | MS.gene49587:CDS | 45.0% | |
| CCTGTCAGGTACCTTCATTT+GGG | + | chr5.1:29011547-29011566 | MS.gene49587:intron | 45.0% | |
| GAAGTGGCAAGAAGAAAGAG+CGG | - | chr5.1:29010941-29010960 | None:intergenic | 45.0% | |
| GATGATTGGAAGCCAAGACA+TGG | + | chr5.1:29011593-29011612 | MS.gene49587:CDS | 45.0% | |
| TATGCTTTACGTGAGGGCTT+CGG | + | chr5.1:29011662-29011681 | MS.gene49587:CDS | 45.0% | |
| TGACTCTGGATTAAGGCAGA+AGG | + | chr5.1:29011988-29012007 | MS.gene49587:CDS | 45.0% | |
| TGGTCGATGACTCTGGATTA+AGG | + | chr5.1:29011981-29012000 | MS.gene49587:CDS | 45.0% | |
| TTGCGTGTTATCGAGTATGC+AGG | + | chr5.1:29011364-29011383 | MS.gene49587:intron | 45.0% | |
| ! | CTTGATAGTCTGGCATCGTA+AGG | + | chr5.1:29011041-29011060 | MS.gene49587:intron | 45.0% |
| ! | TTGCCACTTCAAAGCAACAG+CGG | + | chr5.1:29010951-29010970 | MS.gene49587:CDS | 45.0% |
| !! | CAGTGGTGGTGGCTTAAATT+TGG | + | chr5.1:29011442-29011461 | MS.gene49587:intron | 45.0% |
| GATGCCAGACTATCAAGCGA+CGG | - | chr5.1:29011038-29011057 | None:intergenic | 50.0% | |
| GTCTGTCATATCAGTGGTGG+TGG | + | chr5.1:29011431-29011450 | MS.gene49587:intron | 50.0% | |
| ! | AGTATGGTGTATGGTGACGC+TGG | + | chr5.1:29012109-29012128 | MS.gene49587:CDS | 50.0% |
| !! | CCCAAATGAAGGTACCTGAC+AGG | - | chr5.1:29011550-29011569 | None:intergenic | 50.0% |
| !! | TCACCGCTGTTGCTTTGAAG+TGG | - | chr5.1:29010957-29010976 | None:intergenic | 50.0% |
| GCAGGGCATAGCGCTAATGT+TGG | + | chr5.1:29012037-29012056 | MS.gene49587:CDS | 55.0% | |
| ! | TCGTCCGTCGCTTGATAGTC+TGG | + | chr5.1:29011031-29011050 | MS.gene49587:CDS | 55.0% |
| CTATCAAGCGACGGACGACC+CGG | - | chr5.1:29011029-29011048 | None:intergenic | 60.0% | |
| CCTCCGATGACCACCTCTGC+CGG | + | chr5.1:29011007-29011026 | MS.gene49587:CDS | 65.0% | |
| CTCCGATGACCACCTCTGCC+GGG | + | chr5.1:29011008-29011027 | MS.gene49587:CDS | 65.0% | |
| GACCCGGCAGAGGTGGTCAT+CGG | - | chr5.1:29011013-29011032 | None:intergenic | 65.0% | |
| CCGGCAGAGGTGGTCATCGG+AGG | - | chr5.1:29011010-29011029 | None:intergenic | 70.0% | |
| AGCGACGGACGACCCGGCAG+AGG | - | chr5.1:29011023-29011042 | None:intergenic | 75.0% | |
| GACGGACGACCCGGCAGAGG+TGG | - | chr5.1:29011020-29011039 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 29010913 | 29012162 | 29010913 | ID=MS.gene49587 |
| chr5.1 | mRNA | 29010913 | 29012162 | 29010913 | ID=MS.gene49587.t1;Parent=MS.gene49587 |
| chr5.1 | exon | 29010913 | 29011057 | 29010913 | ID=MS.gene49587.t1.exon1;Parent=MS.gene49587.t1 |
| chr5.1 | CDS | 29010913 | 29011057 | 29010913 | ID=cds.MS.gene49587.t1;Parent=MS.gene49587.t1 |
| chr5.1 | exon | 29011555 | 29012162 | 29011555 | ID=MS.gene49587.t1.exon2;Parent=MS.gene49587.t1 |
| chr5.1 | CDS | 29011555 | 29012162 | 29011555 | ID=cds.MS.gene49587.t1;Parent=MS.gene49587.t1 |
| Gene Sequence |
| Protein sequence |
