AlfalfaGEDB | MS.gene49591

M. sativa cultivar XinJiangDaYe / MS.gene49591

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49591.t1	AES96536.1	94.9	333	8	1	1	333	1	324	1.90E-153	552

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49591.t1	Q940J1	70.1	77	20	1	76	149	45	121	2.3e-22	107.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49591.t1	G7K9R5	94.9	333	8	1	1	333	1	324	1.4e-153	552.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene49591.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49591.t1	MTR_5g038280	95.195	333	7	1	1	333	1	324	0.0	644
MS.gene49591.t1	MTR_8g469430	53.030	330	94	8	10	333	12	286	2.90e-97	289
MS.gene49591.t1	MTR_4g107650	47.578	351	150	10	1	333	1	335	1.89e-79	246
MS.gene49591.t1	MTR_6g007647	47.208	197	90	3	87	280	33	218	1.20e-42	148
MS.gene49591.t1	MTR_6g007647	47.208	197	90	3	87	280	67	252	2.13e-42	149
MS.gene49591.t1	MTR_6g011610	43.388	242	95	10	39	261	41	259	1.23e-39	141
MS.gene49591.t1	MTR_6g011610	47.980	198	76	7	74	261	60	240	1.46e-39	140
MS.gene49591.t1	MTR_8g089895	64.815	108	37	1	77	183	43	150	7.39e-39	140
MS.gene49591.t1	MTR_3g086790	60.526	114	41	1	70	183	47	156	7.02e-38	137
MS.gene49591.t1	MTR_3g080100	66.327	98	33	0	87	184	20	117	2.35e-37	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49591.t1	AT3G01470	42.735	234	97	9	51	273	30	237	3.25e-42	147
MS.gene49591.t1	AT4G40060	54.615	130	53	2	76	202	45	171	6.00e-41	145
MS.gene49591.t1	AT2G22430	68.041	97	31	0	87	183	62	158	5.89e-39	140
MS.gene49591.t1	AT5G65310	68.041	97	31	0	87	183	54	150	2.47e-38	138
MS.gene49591.t1	AT5G65310	68.041	97	31	0	87	183	72	168	2.71e-38	138
MS.gene49591.t1	AT1G69780	64.545	110	38	1	74	182	71	180	2.74e-38	138
MS.gene49591.t1	AT3G01220	41.071	224	113	6	50	261	46	262	3.88e-37	135
MS.gene49591.t1	AT5G15150	60.000	115	44	1	66	180	96	208	2.28e-36	133
MS.gene49591.t1	AT1G26960	59.091	110	44	1	74	182	57	166	1.19e-33	125
MS.gene49591.t1	AT1G27045	46.939	147	60	3	37	183	36	164	1.11e-32	121

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Find 51 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGCTTGAACCTGAT+AGG	0.509669	5.1:-28895202	MS.gene49591:CDS
AAAAGGTTTGATCTTCAACA+GGG	0.685076	5.1:+28894046	None:intergenic
AAAGCATGTGAAGAATCTGT+AGG	0.619583	5.1:+28894210	None:intergenic
AACCAAGGCAAGTTGCTATA+TGG	0.341312	5.1:-28895148	MS.gene49591:CDS
AACCATATAGCAACTTGCCT+TGG	0.481745	5.1:+28895146	None:intergenic
AAGAGCTTGGTTTGCAACCA+AGG	0.513381	5.1:-28895163	MS.gene49591:CDS
AAGGCTGTTCTTATGGCAGG+TGG	0.647915	5.1:-28895931	None:intergenic
ACCATCAACAAGGAAAGAAA+AGG	0.538035	5.1:-28895274	MS.gene49591:CDS
AGATTTCTCACAAGATGAAG+AGG	0.546898	5.1:-28894172	MS.gene49591:CDS
ATAGCCCACATTGCAATGAT+GGG	0.583931	5.1:-28894257	MS.gene49591:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAGTGAGAAGAATTG+AGG	+	chr5.1:28894166-28894185	None:intergenic	30.0%
AAAAGGTTTGATCTTCAACA+GGG	+	chr5.1:28895905-28895924	None:intergenic	30.0%
CGTCAATACAAACTTTCTAT+TGG	-	chr5.1:28894304-28894323	MS.gene49591:CDS	30.0%
GAATGACAAGTTAAAAGAAG+AGG	-	chr5.1:28894933-28894952	MS.gene49591:intron	30.0%
GTCAACACATCAATAAATGT+TGG	-	chr5.1:28895031-28895050	MS.gene49591:CDS	30.0%
GTTTCTTAAGATCATGAAAG+TGG	-	chr5.1:28894385-28894404	MS.gene49591:CDS	30.0%
TATATGGTTCCAAAACAGAA+GGG	-	chr5.1:28894816-28894835	MS.gene49591:intron	30.0%
TCATAACAACAAAGATCCAA+TGG	-	chr5.1:28895554-28895573	MS.gene49591:intron	30.0%
TCTCTTTCTCTTTATCTCTT+GGG	+	chr5.1:28895494-28895513	None:intergenic	30.0%
TTCTCTTTCTCTTTATCTCT+TGG	+	chr5.1:28895495-28895514	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	28894029	28895941	28894029	ID=MS.gene49591
chr5.1	mRNA	28894029	28895941	28894029	ID=MS.gene49591.t1;Parent=MS.gene49591
chr5.1	exon	28895821	28895941	28895821	ID=MS.gene49591.t1.exon1;Parent=MS.gene49591.t1
chr5.1	CDS	28895821	28895941	28895821	ID=cds.MS.gene49591.t1;Parent=MS.gene49591.t1
chr5.1	exon	28895016	28895419	28895016	ID=MS.gene49591.t1.exon2;Parent=MS.gene49591.t1
chr5.1	CDS	28895016	28895419	28895016	ID=cds.MS.gene49591.t1;Parent=MS.gene49591.t1
chr5.1	exon	28894029	28894505	28894029	ID=MS.gene49591.t1.exon3;Parent=MS.gene49591.t1
chr5.1	CDS	28894029	28894505	28894029	ID=cds.MS.gene49591.t1;Parent=MS.gene49591.t1

Gene Sequence

>MS.gene49591

ATGGCAGGTGGCAAGCTTTTTGGTGGTTCTAATATGTCACTTTTGCTTCAAAATGAAAGACTCCCTTGTACTTCTGAAGCCCTTGAATCTCTTTGGGTTCACACCTCTGCTTCTTTTCAAGGTGATCTTCACCTCCTCAATTCTTCTCACTTCTTTTGTTACATAATTGTCATCAGTTTTTGTAGTTGTTTCTTCACCATCATGTGTATATTTGAATTGACAGTGAGTTAGACAGAATCACTGATACACATAATCACTGATTCTGTCTAACTTACCGTCAATACAAACTTTCTATTGGTCTTAAAATCTCACAATTTTAAGTTTTATGAATATCATAGAGCATAACACACACATATGTTTCTTAAGATCATGAAAGTGGGTTTCTTTTTTCATTGTGAAGAAACCATAAAAAAATAGTCTTTTTTATTTTTGAAGAAACCATATAAAATTAGTCTTTTTCATTATTTTTCTATGCATATAGTTGAATTATAACATGGTTTGTGTTTGATGACATGGATTCAGGTTCAAATTCAGTGGTTAATTTTGAGAATGGTGGTGGAAGCAACAGAGTGGTAACAGATAGACCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGAAGATTATGAAGCATGCTACCATCAACAAGGAAAGAAAAGGAGGCTTTCAAGTGAACAAGTTCAATTTCTTGAAAAGAGTTTTGAGGTAGAAAACAAGCTTGAACCTGATAGGAAAGTTCAACTTGCAAAAGAGCTTGGTTTGCAACCAAGGCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTTCAAAACTAAACAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGCTTTGATAGTCTCAAAGATGATTATGATAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTAAAAAAAGTAAAAAGTTGACACACACAAACGAAATTGGACACTATGTTGTCATTGATCGCACGCATTTCACACAGTCAACACATCAATAAATGTTGGATCGAGATCAGACAATCCAAATTCTAATGTAAATTTTCATCTTAAATCTAAAGTATCAAACTTTAAATTTGAATTGTCTGATCTCAATCCAAGGATCATCGATTTACTAACAGCGTGCATTCCGAGAGTCCGAACACCGGTCACCTATCAAAACACACATACACATAAAAACATACTAATTCAGCTTTTCTACTTTATGCTGCTATGACCTCTTTACTTTAATAAAGTTTGGGGAAATGTTAACTTGTGCCCTTGGGGCATAAGTTAAGAAATTAAATGTAGAAGATTTTTCTTAGAACTTGTGCATTGAATGTCTTAAAAGTTGCAAAAGTTTGATATTTCTCCCACTAATGAGTTAATGATTGAATATGGGGTTAATTTTATTTTTTATTTTTTATTTTGTTACAATAGGTTAATTCTCTCAAGAACAAATTGATCCCAAGAGATAAAGAGAAAGAGAATTCAGATGAAAAATCATCACCAGAAGCAATCAATTCACCTCATAACAACAAAGATCCAATGGATATAATCTCAATTACAAATTCAGAAAATGGGTCCAAAGTGTCACTCCCTAATATGGTACTAAAATGTAAGCAAGAAGATGCCAACTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGGGAACAATCTTTCTTCTTTCATAGAGCCTACAGATTCTTCACATGCTTTTGAACCTGATCATTCAGATTTCTCACAAGATGAAGAGGATAATGATAACTTGAGTCATAATCTTTTGACTCTTCCTTGCTTACCAAAAGTTGAAGATGTTTGCTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCTGTTGAAGATCAAACCTTTTGTTTCTGGCCTTATTGA

Protein sequence

>MS.gene49591.t1

MAGGKLFGGSNMSLLLQNERLPCTSEALESLWVHTSASFQGSNSVVNFENGGGSNRVVTDRPFFQQLEKEENCGDEDYEACYHQQGKKRRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDSLKDDYDNLLQENDKLKEEVNSLKNKLIPRDKEKENSDEKSSPEAINSPHNNKDPMDIISITNSENGSKVSLPNMVLKCKQEDANSAKSDVLDSDSPHCNDGNNLSSFIEPTDSSHAFEPDHSDFSQDEEDNDNLSHNLLTLPCLPKVEDVCYDDPHENSCNFGFPVEDQTFCFWPY