AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49591

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49591.t1 MTR_5g038280 95.195 333 7 1 1 333 1 324 0.0 644
MS.gene49591.t1 MTR_8g469430 53.030 330 94 8 10 333 12 286 2.90e-97 289
MS.gene49591.t1 MTR_4g107650 47.578 351 150 10 1 333 1 335 1.89e-79 246
MS.gene49591.t1 MTR_6g007647 47.208 197 90 3 87 280 33 218 1.20e-42 148
MS.gene49591.t1 MTR_6g007647 47.208 197 90 3 87 280 67 252 2.13e-42 149
MS.gene49591.t1 MTR_6g011610 43.388 242 95 10 39 261 41 259 1.23e-39 141
MS.gene49591.t1 MTR_6g011610 47.980 198 76 7 74 261 60 240 1.46e-39 140
MS.gene49591.t1 MTR_8g089895 64.815 108 37 1 77 183 43 150 7.39e-39 140
MS.gene49591.t1 MTR_3g086790 60.526 114 41 1 70 183 47 156 7.02e-38 137
MS.gene49591.t1 MTR_3g080100 66.327 98 33 0 87 184 20 117 2.35e-37 133
MS.gene49591.t1 MTR_3g080100 66.327 98 33 0 87 184 59 156 3.74e-37 134
MS.gene49591.t1 MTR_8g468210 66.667 96 32 0 87 182 77 172 8.05e-37 134
MS.gene49591.t1 MTR_5g039000 60.169 118 46 1 66 182 55 172 1.44e-36 133
MS.gene49591.t1 MTR_7g010020 58.559 111 44 1 74 182 65 175 3.90e-32 121
MS.gene49591.t1 MTR_1g061660 53.571 112 41 2 82 193 54 154 1.05e-26 105
MS.gene49591.t1 MTR_7g103340 55.670 97 36 1 87 183 63 152 1.21e-26 105
MS.gene49591.t1 MTR_3g092150 54.945 91 41 0 89 179 40 130 1.04e-25 103
MS.gene49591.t1 MTR_8g026960 47.573 103 53 1 91 193 38 139 1.75e-24 100
MS.gene49591.t1 MTR_5g019680 60.563 71 28 0 87 157 53 123 1.06e-19 86.3
MS.gene49591.t1 MTR_4g100550 45.902 122 53 4 67 186 103 213 3.23e-19 86.7
MS.gene49591.t1 MTR_5g019650 60.563 71 28 0 87 157 53 123 3.94e-19 85.1
MS.gene49591.t1 MTR_5g013010 40.645 155 71 5 37 185 89 228 1.42e-18 85.1
MS.gene49591.t1 MTR_5g014890 45.794 107 49 2 75 181 113 210 1.47e-17 81.6
MS.gene49591.t1 MTR_4g126900 46.154 91 42 1 90 180 91 174 1.95e-17 80.1
MS.gene49591.t1 MTR_8g006705 48.515 101 44 2 87 186 146 239 3.08e-17 81.3
MS.gene49591.t1 MTR_2g061030 44.340 106 52 1 75 180 188 286 4.33e-17 81.3
MS.gene49591.t1 MTR_7g093430 47.872 94 42 1 87 180 160 246 5.15e-17 80.5
MS.gene49591.t1 MTR_1g054285 46.809 94 43 1 87 180 154 240 3.19e-16 78.2
MS.gene49591.t1 MTR_4g097600 43.925 107 52 2 74 180 115 213 1.00e-15 76.3
MS.gene49591.t1 MTR_1g017090 46.316 95 44 1 87 181 130 217 1.82e-15 75.9
MS.gene49591.t1 MTR_4g084750 37.879 132 61 3 87 217 65 176 2.65e-15 73.9
MS.gene49591.t1 MTR_5g013010 41.667 108 50 3 37 139 89 188 6.84e-14 70.1
MS.gene49591.t1 MTR_3g103590 48.611 72 37 0 87 158 145 216 4.33e-13 69.3
MS.gene49591.t1 MTR_2g038625 41.489 94 48 1 87 180 82 168 2.77e-12 65.5
MS.gene49591.t1 MTR_2g038580 41.489 94 48 1 87 180 82 168 2.77e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49591.t1 AT3G01470 42.735 234 97 9 51 273 30 237 3.25e-42 147
MS.gene49591.t1 AT4G40060 54.615 130 53 2 76 202 45 171 6.00e-41 145
MS.gene49591.t1 AT2G22430 68.041 97 31 0 87 183 62 158 5.89e-39 140
MS.gene49591.t1 AT5G65310 68.041 97 31 0 87 183 54 150 2.47e-38 138
MS.gene49591.t1 AT5G65310 68.041 97 31 0 87 183 72 168 2.71e-38 138
MS.gene49591.t1 AT1G69780 64.545 110 38 1 74 182 71 180 2.74e-38 138
MS.gene49591.t1 AT3G01220 41.071 224 113 6 50 261 46 262 3.88e-37 135
MS.gene49591.t1 AT5G15150 60.000 115 44 1 66 180 96 208 2.28e-36 133
MS.gene49591.t1 AT1G26960 59.091 110 44 1 74 182 57 166 1.19e-33 125
MS.gene49591.t1 AT1G27045 46.939 147 60 3 37 183 36 164 1.11e-32 121
MS.gene49591.t1 AT1G27045 60.825 97 38 0 87 183 25 121 1.11e-31 117
MS.gene49591.t1 AT1G27045 60.825 97 38 0 87 183 25 121 1.11e-31 117
MS.gene49591.t1 AT1G27045 60.825 97 38 0 87 183 17 113 1.49e-31 117
MS.gene49591.t1 AT1G27045 46.259 147 60 4 37 183 36 163 1.97e-30 116
MS.gene49591.t1 AT2G46680 49.541 109 55 0 83 191 28 136 1.42e-28 111
MS.gene49591.t1 AT3G61890 51.429 105 50 1 90 194 33 136 1.79e-27 108
MS.gene49591.t1 AT2G46680 53.763 93 43 0 83 175 28 120 8.50e-27 106
MS.gene49591.t1 AT5G03790 53.608 97 38 1 87 183 77 166 2.08e-25 102
MS.gene49591.t1 AT5G03790 54.839 93 35 1 87 179 77 162 2.27e-24 98.6
MS.gene49591.t1 AT2G36610 47.222 108 42 2 84 183 68 168 7.92e-24 97.1
MS.gene49591.t1 AT4G36740 48.182 110 50 1 87 196 55 157 1.54e-22 94.4
MS.gene49591.t1 AT4G36740 48.182 110 50 1 87 196 56 158 1.66e-22 94.4
MS.gene49591.t1 AT2G18550 45.378 119 58 1 87 205 61 172 2.04e-22 94.0
MS.gene49591.t1 AT5G53980 46.392 97 52 0 87 183 11 107 6.85e-21 88.2
MS.gene49591.t1 AT5G66700 58.333 72 30 0 87 158 71 142 4.59e-20 87.8
MS.gene49591.t1 AT5G06710 48.421 95 42 1 87 181 190 277 3.71e-17 81.6
MS.gene49591.t1 AT4G17460 45.217 115 49 4 75 186 125 228 9.86e-17 79.7
MS.gene49591.t1 AT2G01430 39.706 136 64 4 50 180 103 225 1.98e-16 78.6
MS.gene49591.t1 AT5G47370 39.695 131 64 3 57 186 107 223 2.67e-16 78.2
MS.gene49591.t1 AT2G44910 47.000 100 45 2 87 185 163 255 4.06e-16 78.2
MS.gene49591.t1 AT3G60390 47.000 100 45 2 87 185 162 254 7.07e-16 77.4
MS.gene49591.t1 AT2G22800 45.263 95 45 1 87 181 113 200 9.17e-16 76.6
MS.gene49591.t1 AT4G37790 44.681 94 45 1 87 180 126 212 1.88e-15 75.9
MS.gene49591.t1 AT4G16780 46.000 100 46 2 87 185 129 221 2.57e-15 75.5
MS.gene49591.t1 AT5G06710 58.491 53 22 0 87 139 190 242 1.49e-12 67.4
MS.gene49591.t1 AT1G70920 43.299 97 48 1 84 180 66 155 1.80e-12 65.9
MS.gene49591.t1 AT1G70920 43.299 97 48 1 84 180 36 125 2.37e-12 65.1
MS.gene49591.t1 AT2G01430 41.053 95 45 3 50 139 103 191 3.76e-12 65.1

Find 51 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAAATTCTTGTAATTT+TGG 0.015177 5.1:-28894072 MS.gene49591:CDS
TCAATTACAAATTCAGAAAA+TGG 0.161025 5.1:-28894363 MS.gene49591:CDS
CTGAAGCCCTTGAATCTCTT+TGG 0.177337 5.1:-28895846 MS.gene49591:CDS
TGAACCTTGCCCTTCTGTTT+TGG 0.204900 5.1:+28895123 None:intergenic
TTCTCTTTCTCTTTATCTCT+TGG 0.249115 5.1:+28894456 None:intergenic
GCAAGTTGAACTTTCCTATC+AGG 0.270065 5.1:+28895188 None:intergenic
TAGCAAACATCTTCAACTTT+TGG 0.273698 5.1:+28894105 None:intergenic
TGAAGCCCTTGAATCTCTTT+GGG 0.300479 5.1:-28895845 MS.gene49591:CDS
TGAGGTGAATTGATTGCTTC+TGG 0.314138 5.1:+28894414 None:intergenic
CAAAGTGTCACTCCCTAATA+TGG 0.317058 5.1:-28894337 MS.gene49591:CDS
AACCAAGGCAAGTTGCTATA+TGG 0.341312 5.1:-28895148 MS.gene49591:CDS
GTGGAAATTTAAATTCAATA+AGG 0.341810 5.1:+28894015 None:intergenic
TCTCTTTCTCTTTATCTCTT+GGG 0.342274 5.1:+28894457 None:intergenic
CAAAAGGTTTGATCTTCAAC+AGG 0.362492 5.1:+28894045 None:intergenic
TTTCTCAAGTTGTTGAAAGA+AGG 0.381022 5.1:+28895334 None:intergenic
GATAGCCCACATTGCAATGA+TGG 0.423802 5.1:-28894258 MS.gene49591:CDS
ATTGGATCTTTGTTGTTATG+AGG 0.430991 5.1:+28894396 None:intergenic
TTCTCAAGTTGTTGAAAGAA+GGG 0.453337 5.1:+28895335 None:intergenic
GTAATTGAGATTATATCCAT+TGG 0.466626 5.1:+28894378 None:intergenic
CATATTAGGGAGTGACACTT+TGG 0.480614 5.1:+28894338 None:intergenic
GTTCAACTTGCAAAAGAGCT+TGG 0.481261 5.1:-28895176 MS.gene49591:CDS
AACCATATAGCAACTTGCCT+TGG 0.481745 5.1:+28895146 None:intergenic
TGTGAGAAATCTGAATGATC+AGG 0.485138 5.1:+28894183 None:intergenic
CAATTACAAATTCAGAAAAT+GGG 0.485544 5.1:-28894362 MS.gene49591:CDS
GAATGACAAGTTAAAAGAAG+AGG 0.495747 5.1:-28895015 MS.gene49591:intron
TATAAGGCTGTTCTTATGGC+AGG 0.496797 5.1:-28895934 None:intergenic
TCAATAAGGCCAGAAACAAA+AGG 0.504416 5.1:+28894029 None:intergenic
AAAACAAGCTTGAACCTGAT+AGG 0.509669 5.1:-28895202 MS.gene49591:CDS
AAGAGCTTGGTTTGCAACCA+AGG 0.513381 5.1:-28895163 MS.gene49591:CDS
TGTGAACCCAAAGAGATTCA+AGG 0.525903 5.1:+28895839 None:intergenic
ACCATCAACAAGGAAAGAAA+AGG 0.538035 5.1:-28895274 MS.gene49591:CDS
AGATTTCTCACAAGATGAAG+AGG 0.546898 5.1:-28894172 MS.gene49591:CDS
TGTTCCCATCATTGCAATGT+GGG 0.548653 5.1:+28894253 None:intergenic
TCATAACAACAAAGATCCAA+TGG 0.563990 5.1:-28894394 MS.gene49591:CDS
GGATTCAGGTTCAAATTCAG+TGG 0.566281 5.1:-28895405 MS.gene49591:intron
TCAAGGGCTTCAGAAGTACA+AGG 0.569376 5.1:+28895856 None:intergenic
GTGAACCCAAAGAGATTCAA+GGG 0.581702 5.1:+28895840 None:intergenic
CTATATGGTTCCAAAACAGA+AGG 0.583686 5.1:-28895133 MS.gene49591:CDS
ATAGCCCACATTGCAATGAT+GGG 0.583931 5.1:-28894257 MS.gene49591:CDS
CTTGAGAAAGAAGAGAATTG+TGG 0.599550 5.1:-28895320 MS.gene49591:CDS
AAAGCATGTGAAGAATCTGT+AGG 0.619583 5.1:+28894210 None:intergenic
ATCAACAAGGAAAGAAAAGG+AGG 0.621166 5.1:-28895271 MS.gene49591:CDS
ATCACCTTGAAAAGAAGCAG+AGG 0.635119 5.1:+28895816 None:intergenic
TTGTTCCCATCATTGCAATG+TGG 0.645404 5.1:+28894252 None:intergenic
AAGGCTGTTCTTATGGCAGG+TGG 0.647915 5.1:-28895931 None:intergenic
GGTTCCAAAACAGAAGGGCA+AGG 0.651221 5.1:-28895127 MS.gene49591:CDS
TATATGGTTCCAAAACAGAA+GGG 0.680215 5.1:-28895132 MS.gene49591:CDS
AAAAGGTTTGATCTTCAACA+GGG 0.685076 5.1:+28894046 None:intergenic
GAAGCATGCTACCATCAACA+AGG 0.695864 5.1:-28895284 MS.gene49591:CDS
CAAGGGCTTCAGAAGTACAA+GGG 0.720149 5.1:+28895857 None:intergenic
TGGTGGTGGAAGCAACAGAG+TGG 0.722441 5.1:-28895369 MS.gene49591:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTATTTTGTTACAAT+AGG - chr5.1:28895443-28895462 MS.gene49591:intron 10.0%
!!! TAAAAAAGACTATTTTTTTA+TGG + chr5.1:28894435-28894454 None:intergenic 10.0%
!! TCTTTACTTTAATAAAGTTT+GGG - chr5.1:28895264-28895283 MS.gene49591:CDS 15.0%
!! TGAAAATTTACATTAGAATT+TGG + chr5.1:28895073-28895092 None:intergenic 15.0%
!!! ATGAAAATTCTTGTAATTTT+GGG - chr5.1:28895877-28895896 MS.gene49591:CDS 15.0%
!!! TGAAAAAGACTAATTTTATA+TGG + chr5.1:28894470-28894489 None:intergenic 15.0%
!! AATGAGTTAATGATTGAATA+TGG - chr5.1:28895403-28895422 MS.gene49591:intron 20.0%
!! ATGAGTTAATGATTGAATAT+GGG - chr5.1:28895404-28895423 MS.gene49591:intron 20.0%
!! CAAACTTTATTAAAGTAAAG+AGG + chr5.1:28895265-28895284 None:intergenic 20.0%
!! CAATTACAAATTCAGAAAAT+GGG - chr5.1:28895586-28895605 MS.gene49591:intron 20.0%
!! CATATAGTTGAATTATAACA+TGG - chr5.1:28894503-28894522 MS.gene49591:intron 20.0%
!! CTCTTTACTTTAATAAAGTT+TGG - chr5.1:28895263-28895282 MS.gene49591:CDS 20.0%
!! CTTTACTTTAATAAAGTTTG+GGG - chr5.1:28895265-28895284 MS.gene49591:CDS 20.0%
!! TCAATTACAAATTCAGAAAA+TGG - chr5.1:28895585-28895604 MS.gene49591:intron 20.0%
!!! AAATTACAAGAATTTTCATG+TGG + chr5.1:28895876-28895895 None:intergenic 20.0%
!!! AATTACAAGAATTTTCATGT+GGG + chr5.1:28895875-28895894 None:intergenic 20.0%
!!! CATGAAAATTCTTGTAATTT+TGG - chr5.1:28895876-28895895 MS.gene49591:CDS 20.0%
!!! TACATTTTAGTACCATATTA+GGG + chr5.1:28895626-28895645 None:intergenic 20.0%
!!! TTACATTTTAGTACCATATT+AGG + chr5.1:28895627-28895646 None:intergenic 20.0%
! AAACAGCTTGAAAAAGATTA+TGG - chr5.1:28894853-28894872 MS.gene49591:intron 25.0%
! CAATAGAAAGTTTGTATTGA+CGG + chr5.1:28894306-28894325 None:intergenic 25.0%
! CAATTCAAATATACACATGA+TGG + chr5.1:28894228-28894247 None:intergenic 25.0%
! GTAATTGAGATTATATCCAT+TGG + chr5.1:28895573-28895592 None:intergenic 25.0%
! TCAATCATTAACTCATTAGT+GGG + chr5.1:28895400-28895419 None:intergenic 25.0%
! TGAGTTAATGATTGAATATG+GGG - chr5.1:28895405-28895424 MS.gene49591:intron 25.0%
! TTCAATCATTAACTCATTAG+TGG + chr5.1:28895401-28895420 None:intergenic 25.0%
! TTTCTTAAGATCATGAAAGT+GGG - chr5.1:28894386-28894405 MS.gene49591:CDS 25.0%
!! ATTTCTTGAAAAGAGTTTTG+AGG - chr5.1:28894720-28894739 MS.gene49591:intron 25.0%
AAAAGAAGTGAGAAGAATTG+AGG + chr5.1:28894166-28894185 None:intergenic 30.0%
AAAAGGTTTGATCTTCAACA+GGG + chr5.1:28895905-28895924 None:intergenic 30.0%
CGTCAATACAAACTTTCTAT+TGG - chr5.1:28894304-28894323 MS.gene49591:CDS 30.0%
GAATGACAAGTTAAAAGAAG+AGG - chr5.1:28894933-28894952 MS.gene49591:intron 30.0%
GTCAACACATCAATAAATGT+TGG - chr5.1:28895031-28895050 MS.gene49591:CDS 30.0%
GTTTCTTAAGATCATGAAAG+TGG - chr5.1:28894385-28894404 MS.gene49591:CDS 30.0%
TATATGGTTCCAAAACAGAA+GGG - chr5.1:28894816-28894835 MS.gene49591:intron 30.0%
TCATAACAACAAAGATCCAA+TGG - chr5.1:28895554-28895573 MS.gene49591:intron 30.0%
TCTCTTTCTCTTTATCTCTT+GGG + chr5.1:28895494-28895513 None:intergenic 30.0%
TTCTCTTTCTCTTTATCTCT+TGG + chr5.1:28895495-28895514 None:intergenic 30.0%
! TAGCAAACATCTTCAACTTT+TGG + chr5.1:28895846-28895865 None:intergenic 30.0%
! TTCTCAAGTTGTTGAAAGAA+GGG + chr5.1:28894616-28894635 None:intergenic 30.0%
! TTTCTCAAGTTGTTGAAAGA+AGG + chr5.1:28894617-28894636 None:intergenic 30.0%
!! AAGATCAAACCTTTTGTTTC+TGG - chr5.1:28895910-28895929 MS.gene49591:CDS 30.0%
!! ATTGGATCTTTGTTGTTATG+AGG + chr5.1:28895555-28895574 None:intergenic 30.0%
!! TCAGTGGTTAATTTTGAGAA+TGG - chr5.1:28894559-28894578 MS.gene49591:intron 30.0%
!!! ATGTGTATGTGTGTTTTGAT+AGG + chr5.1:28895200-28895219 None:intergenic 30.0%
AAAACAAGCTTGAACCTGAT+AGG - chr5.1:28894746-28894765 MS.gene49591:intron 35.0%
AAAGCATGTGAAGAATCTGT+AGG + chr5.1:28895741-28895760 None:intergenic 35.0%
AATTGTCTGATCTCAATCCA+AGG - chr5.1:28895125-28895144 MS.gene49591:CDS 35.0%
ACCATCAACAAGGAAAGAAA+AGG - chr5.1:28894674-28894693 MS.gene49591:intron 35.0%
AGATTTCTCACAAGATGAAG+AGG - chr5.1:28895776-28895795 MS.gene49591:intron 35.0%
ATCAACAAGGAAAGAAAAGG+AGG - chr5.1:28894677-28894696 MS.gene49591:intron 35.0%
ATTTCTTAACTTATGCCCCA+AGG + chr5.1:28895307-28895326 None:intergenic 35.0%
CAAAAGGTTTGATCTTCAAC+AGG + chr5.1:28895906-28895925 None:intergenic 35.0%
CTATATGGTTCCAAAACAGA+AGG - chr5.1:28894815-28894834 MS.gene49591:intron 35.0%
CTTGAGAAAGAAGAGAATTG+TGG - chr5.1:28894628-28894647 MS.gene49591:intron 35.0%
GTTAGTAAATCGATGATCCT+TGG + chr5.1:28895145-28895164 None:intergenic 35.0%
TCAATAAGGCCAGAAACAAA+AGG + chr5.1:28895922-28895941 None:intergenic 35.0%
TGTGAGAAATCTGAATGATC+AGG + chr5.1:28895768-28895787 None:intergenic 35.0%
TTGACACACACAAACGAAAT+TGG - chr5.1:28894972-28894991 MS.gene49591:intron 35.0%
TTTCTTAACTTATGCCCCAA+GGG + chr5.1:28895306-28895325 None:intergenic 35.0%
! ATGGTTTGTGTTTGATGACA+TGG - chr5.1:28894522-28894541 MS.gene49591:intron 35.0%
! TCCTTTTCTTTCCTTGTTGA+TGG + chr5.1:28894678-28894697 None:intergenic 35.0%
! TCTTCAACTTTTGGTAAGCA+AGG + chr5.1:28895837-28895856 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+GGG - chr5.1:28895288-28895307 MS.gene49591:CDS 35.0%
!! GTGGTTAATTTTGAGAATGG+TGG - chr5.1:28894562-28894581 MS.gene49591:intron 35.0%
!! GTTAATTTTGAGAATGGTGG+TGG - chr5.1:28894565-28894584 MS.gene49591:intron 35.0%
AACCAAGGCAAGTTGCTATA+TGG - chr5.1:28894800-28894819 MS.gene49591:intron 40.0%
AACCATATAGCAACTTGCCT+TGG + chr5.1:28894805-28894824 None:intergenic 40.0%
AGAAGTGAGAAGAATTGAGG+AGG + chr5.1:28894163-28894182 None:intergenic 40.0%
ATAGCCCACATTGCAATGAT+GGG - chr5.1:28895691-28895710 MS.gene49591:intron 40.0%
ATCACCTTGAAAAGAAGCAG+AGG + chr5.1:28894135-28894154 None:intergenic 40.0%
CATATTAGGGAGTGACACTT+TGG + chr5.1:28895613-28895632 None:intergenic 40.0%
GTGAACCCAAAGAGATTCAA+GGG + chr5.1:28894111-28894130 None:intergenic 40.0%
GTTCAACTTGCAAAAGAGCT+TGG - chr5.1:28894772-28894791 MS.gene49591:intron 40.0%
TGAAGCCCTTGAATCTCTTT+GGG - chr5.1:28894103-28894122 MS.gene49591:CDS 40.0%
TGAGGTGAATTGATTGCTTC+TGG + chr5.1:28895537-28895556 None:intergenic 40.0%
TGTGAACCCAAAGAGATTCA+AGG + chr5.1:28894112-28894131 None:intergenic 40.0%
TGTTCCCATCATTGCAATGT+GGG + chr5.1:28895698-28895717 None:intergenic 40.0%
TTGTTCCCATCATTGCAATG+TGG + chr5.1:28895699-28895718 None:intergenic 40.0%
! CAAAGTGTCACTCCCTAATA+TGG - chr5.1:28895611-28895630 MS.gene49591:intron 40.0%
! GCAAGTTGAACTTTCCTATC+AGG + chr5.1:28894763-28894782 None:intergenic 40.0%
! GGATTCAGGTTCAAATTCAG+TGG - chr5.1:28894543-28894562 MS.gene49591:intron 40.0%
! GTGTTTGATGACATGGATTC+AGG - chr5.1:28894529-28894548 MS.gene49591:intron 40.0%
!! AATGTTAACTTGTGCCCTTG+GGG - chr5.1:28895289-28895308 MS.gene49591:CDS 40.0%
!! CACATCACTTTTAGCTGAGT+TGG + chr5.1:28895661-28895680 None:intergenic 40.0%
!! GAAATGTTAACTTGTGCCCT+TGG - chr5.1:28895287-28895306 MS.gene49591:CDS 40.0%
!!! TGTGTGTTTTGATAGGTGAC+CGG + chr5.1:28895193-28895212 None:intergenic 40.0%
CTGAAGCCCTTGAATCTCTT+TGG - chr5.1:28894102-28894121 MS.gene49591:CDS 45.0%
GAAGCATGCTACCATCAACA+AGG - chr5.1:28894664-28894683 MS.gene49591:intron 45.0%
GATAGCCCACATTGCAATGA+TGG - chr5.1:28895690-28895709 MS.gene49591:intron 45.0%
TTTGATAGGTGACCGGTGTT+CGG + chr5.1:28895186-28895205 None:intergenic 45.0%
! CAAGGGCTTCAGAAGTACAA+GGG + chr5.1:28894094-28894113 None:intergenic 45.0%
! CACACCTCTGCTTCTTTTCA+AGG - chr5.1:28894128-28894147 MS.gene49591:CDS 45.0%
! TCAAGGGCTTCAGAAGTACA+AGG + chr5.1:28894095-28894114 None:intergenic 45.0%
! TGAACCTTGCCCTTCTGTTT+TGG + chr5.1:28894828-28894847 None:intergenic 45.0%
!! AAGAGCTTGGTTTGCAACCA+AGG - chr5.1:28894785-28894804 MS.gene49591:intron 45.0%
GGTTCCAAAACAGAAGGGCA+AGG - chr5.1:28894821-28894840 MS.gene49591:intron 50.0%
! ATGGCAGGTGGCAAGCTTTT+TGG - chr5.1:28894029-28894048 MS.gene49591:CDS 50.0%
CATTCCGAGAGTCCGAACAC+CGG - chr5.1:28895171-28895190 MS.gene49591:CDS 55.0%
! GCAGGTGGCAAGCTTTTTGG+TGG - chr5.1:28894032-28894051 MS.gene49591:CDS 55.0%
!! TGGTGGTGGAAGCAACAGAG+TGG - chr5.1:28894579-28894598 MS.gene49591:intron 55.0%
GTGACCGGTGTTCGGACTCT+CGG + chr5.1:28895178-28895197 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 28894029 28895941 28894029 ID=MS.gene49591
chr5.1 mRNA 28894029 28895941 28894029 ID=MS.gene49591.t1;Parent=MS.gene49591
chr5.1 exon 28895821 28895941 28895821 ID=MS.gene49591.t1.exon1;Parent=MS.gene49591.t1
chr5.1 CDS 28895821 28895941 28895821 ID=cds.MS.gene49591.t1;Parent=MS.gene49591.t1
chr5.1 exon 28895016 28895419 28895016 ID=MS.gene49591.t1.exon2;Parent=MS.gene49591.t1
chr5.1 CDS 28895016 28895419 28895016 ID=cds.MS.gene49591.t1;Parent=MS.gene49591.t1
chr5.1 exon 28894029 28894505 28894029 ID=MS.gene49591.t1.exon3;Parent=MS.gene49591.t1
chr5.1 CDS 28894029 28894505 28894029 ID=cds.MS.gene49591.t1;Parent=MS.gene49591.t1
Gene Sequence

>MS.gene49591

ATGGCAGGTGGCAAGCTTTTTGGTGGTTCTAATATGTCACTTTTGCTTCAAAATGAAAGACTCCCTTGTACTTCTGAAGCCCTTGAATCTCTTTGGGTTCACACCTCTGCTTCTTTTCAAGGTGATCTTCACCTCCTCAATTCTTCTCACTTCTTTTGTTACATAATTGTCATCAGTTTTTGTAGTTGTTTCTTCACCATCATGTGTATATTTGAATTGACAGTGAGTTAGACAGAATCACTGATACACATAATCACTGATTCTGTCTAACTTACCGTCAATACAAACTTTCTATTGGTCTTAAAATCTCACAATTTTAAGTTTTATGAATATCATAGAGCATAACACACACATATGTTTCTTAAGATCATGAAAGTGGGTTTCTTTTTTCATTGTGAAGAAACCATAAAAAAATAGTCTTTTTTATTTTTGAAGAAACCATATAAAATTAGTCTTTTTCATTATTTTTCTATGCATATAGTTGAATTATAACATGGTTTGTGTTTGATGACATGGATTCAGGTTCAAATTCAGTGGTTAATTTTGAGAATGGTGGTGGAAGCAACAGAGTGGTAACAGATAGACCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGAAGATTATGAAGCATGCTACCATCAACAAGGAAAGAAAAGGAGGCTTTCAAGTGAACAAGTTCAATTTCTTGAAAAGAGTTTTGAGGTAGAAAACAAGCTTGAACCTGATAGGAAAGTTCAACTTGCAAAAGAGCTTGGTTTGCAACCAAGGCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTTCAAAACTAAACAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGCTTTGATAGTCTCAAAGATGATTATGATAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTAAAAAAAGTAAAAAGTTGACACACACAAACGAAATTGGACACTATGTTGTCATTGATCGCACGCATTTCACACAGTCAACACATCAATAAATGTTGGATCGAGATCAGACAATCCAAATTCTAATGTAAATTTTCATCTTAAATCTAAAGTATCAAACTTTAAATTTGAATTGTCTGATCTCAATCCAAGGATCATCGATTTACTAACAGCGTGCATTCCGAGAGTCCGAACACCGGTCACCTATCAAAACACACATACACATAAAAACATACTAATTCAGCTTTTCTACTTTATGCTGCTATGACCTCTTTACTTTAATAAAGTTTGGGGAAATGTTAACTTGTGCCCTTGGGGCATAAGTTAAGAAATTAAATGTAGAAGATTTTTCTTAGAACTTGTGCATTGAATGTCTTAAAAGTTGCAAAAGTTTGATATTTCTCCCACTAATGAGTTAATGATTGAATATGGGGTTAATTTTATTTTTTATTTTTTATTTTGTTACAATAGGTTAATTCTCTCAAGAACAAATTGATCCCAAGAGATAAAGAGAAAGAGAATTCAGATGAAAAATCATCACCAGAAGCAATCAATTCACCTCATAACAACAAAGATCCAATGGATATAATCTCAATTACAAATTCAGAAAATGGGTCCAAAGTGTCACTCCCTAATATGGTACTAAAATGTAAGCAAGAAGATGCCAACTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGGGAACAATCTTTCTTCTTTCATAGAGCCTACAGATTCTTCACATGCTTTTGAACCTGATCATTCAGATTTCTCACAAGATGAAGAGGATAATGATAACTTGAGTCATAATCTTTTGACTCTTCCTTGCTTACCAAAAGTTGAAGATGTTTGCTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCTGTTGAAGATCAAACCTTTTGTTTCTGGCCTTATTGA
Protein sequence

>MS.gene49591.t1

MAGGKLFGGSNMSLLLQNERLPCTSEALESLWVHTSASFQGSNSVVNFENGGGSNRVVTDRPFFQQLEKEENCGDEDYEACYHQQGKKRRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDSLKDDYDNLLQENDKLKEEVNSLKNKLIPRDKEKENSDEKSSPEAINSPHNNKDPMDIISITNSENGSKVSLPNMVLKCKQEDANSAKSDVLDSDSPHCNDGNNLSSFIEPTDSSHAFEPDHSDFSQDEEDNDNLSHNLLTLPCLPKVEDVCYDDPHENSCNFGFPVEDQTFCFWPY