Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49706.t1 | XP_013446890.1 | 96.7 | 301 | 8 | 1 | 1 | 301 | 1 | 299 | 7.80E-130 | 473.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49706.t1 | Q8VWK4 | 56.8 | 250 | 97 | 6 | 1 | 245 | 1 | 244 | 7.6e-65 | 248.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49706.t1 | A0A072TU28 | 96.7 | 301 | 8 | 1 | 1 | 301 | 1 | 299 | 5.7e-130 | 473.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49706.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49706.t1 | MTR_8g494240 | 96.678 | 301 | 8 | 1 | 1 | 301 | 1 | 299 | 0.0 | 583 |
| MS.gene49706.t1 | MTR_8g494240 | 96.309 | 298 | 9 | 1 | 1 | 298 | 1 | 296 | 0.0 | 576 |
| MS.gene49706.t1 | MTR_8g494240 | 96.633 | 297 | 8 | 1 | 1 | 297 | 1 | 295 | 0.0 | 576 |
| MS.gene49706.t1 | MTR_8g494240 | 51.786 | 112 | 22 | 4 | 3 | 114 | 304 | 383 | 1.95e-19 | 88.2 |
| MS.gene49706.t1 | MTR_2g031870 | 76.689 | 296 | 65 | 2 | 1 | 294 | 1 | 294 | 2.46e-132 | 377 |
| MS.gene49706.t1 | MTR_8g092810 | 67.717 | 254 | 69 | 3 | 1 | 243 | 1 | 252 | 1.44e-111 | 331 |
| MS.gene49706.t1 | MTR_2g031870 | 69.257 | 296 | 61 | 3 | 1 | 294 | 1 | 268 | 2.46e-107 | 313 |
| MS.gene49706.t1 | MTR_0095s0040 | 94.268 | 157 | 3 | 2 | 1 | 153 | 1 | 155 | 7.06e-103 | 301 |
| MS.gene49706.t1 | MTR_5g015340 | 52.560 | 293 | 134 | 5 | 1 | 292 | 1 | 289 | 6.82e-65 | 206 |
| MS.gene49706.t1 | MTR_5g015340 | 52.560 | 293 | 134 | 5 | 1 | 292 | 1 | 289 | 6.82e-65 | 206 |
| MS.gene49706.t1 | MTR_4g097130 | 49.191 | 309 | 135 | 7 | 1 | 292 | 1 | 304 | 2.33e-64 | 205 |
| MS.gene49706.t1 | MTR_4g097130 | 49.191 | 309 | 135 | 7 | 1 | 292 | 1 | 304 | 2.67e-64 | 205 |
| MS.gene49706.t1 | MTR_5g015340 | 52.560 | 293 | 134 | 5 | 1 | 292 | 1 | 289 | 1.54e-63 | 205 |
| MS.gene49706.t1 | MTR_4g097130 | 47.452 | 314 | 138 | 5 | 1 | 292 | 1 | 309 | 4.84e-63 | 202 |
| MS.gene49706.t1 | MTR_1g088180 | 62.295 | 122 | 43 | 2 | 125 | 246 | 295 | 413 | 7.11e-41 | 147 |
| MS.gene49706.t1 | MTR_8g018410 | 40.314 | 191 | 103 | 4 | 1 | 187 | 1 | 184 | 4.20e-34 | 125 |
| MS.gene49706.t1 | MTR_1g041765 | 64.368 | 87 | 27 | 2 | 1 | 87 | 1 | 83 | 8.48e-30 | 112 |
| MS.gene49706.t1 | MTR_2g099610 | 34.545 | 220 | 103 | 5 | 1 | 190 | 1 | 209 | 1.23e-28 | 112 |
| MS.gene49706.t1 | MTR_2g031880 | 54.464 | 112 | 35 | 5 | 61 | 168 | 3 | 102 | 2.98e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49706.t1 | AT1G49950 | 60.328 | 305 | 108 | 7 | 1 | 299 | 1 | 298 | 1.39e-84 | 256 |
| MS.gene49706.t1 | AT1G49950 | 60.328 | 305 | 108 | 7 | 1 | 299 | 1 | 298 | 1.39e-84 | 256 |
| MS.gene49706.t1 | AT1G49950 | 60.328 | 305 | 108 | 7 | 1 | 299 | 1 | 298 | 1.39e-84 | 256 |
| MS.gene49706.t1 | AT5G67580 | 49.495 | 297 | 141 | 5 | 1 | 292 | 1 | 293 | 4.15e-57 | 186 |
| MS.gene49706.t1 | AT5G67580 | 49.495 | 297 | 141 | 5 | 1 | 292 | 1 | 293 | 4.15e-57 | 186 |
| MS.gene49706.t1 | AT3G49850 | 48.185 | 303 | 142 | 6 | 1 | 297 | 1 | 294 | 4.60e-56 | 183 |
| MS.gene49706.t1 | AT3G49850 | 48.185 | 303 | 142 | 6 | 1 | 297 | 1 | 294 | 4.60e-56 | 183 |
| MS.gene49706.t1 | AT1G72740 | 36.059 | 269 | 152 | 5 | 1 | 269 | 1 | 249 | 1.37e-35 | 129 |
| MS.gene49706.t1 | AT1G72740 | 35.636 | 275 | 151 | 6 | 1 | 269 | 1 | 255 | 3.06e-33 | 124 |
| MS.gene49706.t1 | AT1G17520 | 36.869 | 198 | 108 | 4 | 1 | 187 | 1 | 192 | 1.84e-26 | 105 |
| MS.gene49706.t1 | AT1G17520 | 37.186 | 199 | 107 | 5 | 1 | 187 | 1 | 193 | 1.03e-25 | 103 |
| MS.gene49706.t1 | AT1G17520 | 38.021 | 192 | 102 | 4 | 1 | 181 | 1 | 186 | 1.19e-25 | 103 |
| MS.gene49706.t1 | AT1G17520 | 38.342 | 193 | 101 | 5 | 1 | 181 | 1 | 187 | 6.74e-25 | 101 |
| MS.gene49706.t1 | AT1G54260 | 47.826 | 69 | 36 | 0 | 124 | 192 | 6 | 74 | 8.59e-13 | 66.2 |
Find 88 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACCCACCCATGTTATTAT+TGG | 0.233775 | 4.4:-8026483 | MS.gene49706:CDS |
| GAGCTCCAGGGAGAAGTCTA+AGG | 0.278068 | 4.4:-8030199 | MS.gene49706:CDS |
| ATGGCTATCACTGCCGTTAC+TGG | 0.296926 | 4.4:-8030126 | MS.gene49706:CDS |
| CAGATTAGATAACCTTATAT+TGG | 0.305916 | 4.4:-8029093 | MS.gene49706:CDS |
| GCAGAAAACCTCTATGAAAT+TGG | 0.307733 | 4.4:-8026453 | MS.gene49706:CDS |
| TGTGGTTTGGATAGGATAAA+TGG | 0.317432 | 4.4:-8030251 | MS.gene49706:intron |
| AGTCTGCCGGTGGCCGGTAT+TGG | 0.318430 | 4.4:+8027543 | None:intergenic |
| CCAAGCATGGGGTGGGAAAA+TGG | 0.324906 | 4.4:-8030455 | MS.gene49706:CDS |
| TAGATATAGCTTCCAATATA+AGG | 0.325779 | 4.4:+8029081 | None:intergenic |
| AGAGACATGCCGCACATTCC+TGG | 0.352882 | 4.4:-8030054 | MS.gene49706:CDS |
| AATTTGAGTGTGACGGGAAA+TGG | 0.361800 | 4.4:-8030225 | MS.gene49706:CDS |
| CGGGAAATGGATCGAGCTCC+AGG | 0.365659 | 4.4:-8030212 | MS.gene49706:CDS |
| AAATCTATCTCAGACTTTGT+AGG | 0.366127 | 4.4:+8026410 | None:intergenic |
| TCTGATGTCCATTTCTGCTT+AGG | 0.367914 | 4.4:+8030507 | None:intergenic |
| GAATCATCCGGTACCGAAAC+AGG | 0.369840 | 4.4:-8030160 | MS.gene49706:CDS |
| TTCCTGGTCCTGGTCCAAAA+AGG | 0.410764 | 4.4:-8030038 | MS.gene49706:intron |
| TTCAGGTGAAACGCAGGTAT+AGG | 0.416662 | 4.4:-8026541 | MS.gene49706:intron |
| AACAAGACACGATTAAATTC+AGG | 0.435715 | 4.4:+8030414 | None:intergenic |
| CTTCCTCTGTCTGAATATGC+AGG | 0.439039 | 4.4:+8026506 | None:intergenic |
| TGGGTGCTCCTAAGCAGAAA+TGG | 0.442291 | 4.4:-8030515 | MS.gene49706:CDS |
| GAAACAGGATGACAACTCTA+TGG | 0.446572 | 4.4:-8030145 | MS.gene49706:CDS |
| TTGTCATCCTGTTTCGGTAC+CGG | 0.459989 | 4.4:+8030153 | None:intergenic |
| ATAGAGTTGTCATCCTGTTT+CGG | 0.460910 | 4.4:+8030147 | None:intergenic |
| TGGAGAAATTTGAGTGTGAC+GGG | 0.461904 | 4.4:-8030231 | MS.gene49706:CDS |
| GAGGAAGCAGCTCTTAAAGC+TGG | 0.470003 | 4.4:-8030483 | MS.gene49706:CDS |
| CGCCATAGCAGAAGCTGAAG+AGG | 0.472911 | 4.4:-8026309 | MS.gene49706:CDS |
| CTCTTGAGACTTGAAGAGGC+TGG | 0.475264 | 4.4:+8030073 | None:intergenic |
| AACTATTGCTTCTTTCATAG+AGG | 0.478041 | 4.4:-8029027 | MS.gene49706:intron |
| TGCCTCTTCAGCTTCTGCTA+TGG | 0.491455 | 4.4:+8026307 | None:intergenic |
| CCTCCCTTCCAATAATAACA+TGG | 0.495257 | 4.4:+8026475 | None:intergenic |
| AGTCTAAGGGAGCAATCAAA+AGG | 0.496855 | 4.4:-8030185 | MS.gene49706:CDS |
| TTCCTCTGTCTGAATATGCA+GGG | 0.497922 | 4.4:+8026507 | None:intergenic |
| AATCTATCTCAGACTTTGTA+GGG | 0.500580 | 4.4:+8026411 | None:intergenic |
| AAACCTCTATGAAATTGGAC+AGG | 0.500951 | 4.4:-8026448 | MS.gene49706:CDS |
| AAGCTGGAGTTGCCAAGCAT+GGG | 0.503893 | 4.4:-8030467 | MS.gene49706:CDS |
| TGCTCCCTTAGACTTCTCCC+TGG | 0.506852 | 4.4:+8030194 | None:intergenic |
| ATGCCGCACATTCCTGGTCC+TGG | 0.511744 | 4.4:-8030048 | MS.gene49706:CDS |
| GATAGATTTAGAAATAGAAA+AGG | 0.512772 | 4.4:-8026396 | MS.gene49706:CDS |
| TCGCTCAAATGTCGATCTCA+AGG | 0.519219 | 4.4:-8030388 | MS.gene49706:intron |
| ATCCCTGTCCAATTTCATAG+AGG | 0.522008 | 4.4:+8026445 | None:intergenic |
| ATATCTAGCTTGAATGAGCT+TGG | 0.522209 | 4.4:-8029065 | MS.gene49706:CDS |
| AATCAAAAGGGTGAATCATC+CGG | 0.527127 | 4.4:-8030172 | MS.gene49706:CDS |
| ATCAACAATTTCATCATCAT+CGG | 0.527962 | 4.4:+8030098 | None:intergenic |
| AGCTGAAGAGGCAGCAAAGG+AGG | 0.528236 | 4.4:-8026297 | MS.gene49706:CDS |
| AAAATGGCGTACAATAATCA+AGG | 0.529843 | 4.4:-8030439 | MS.gene49706:CDS |
| ATGGAGAAATTTGAGTGTGA+CGG | 0.530825 | 4.4:-8030232 | MS.gene49706:CDS |
| ATCTAGCGGAAAACTGATCA+AGG | 0.531425 | 4.4:-8027483 | MS.gene49706:intron |
| AAAGCTGGAGTTGCCAAGCA+TGG | 0.532704 | 4.4:-8030468 | MS.gene49706:CDS |
| AGAAGCTGAAGAGGCAGCAA+AGG | 0.535223 | 4.4:-8026300 | MS.gene49706:CDS |
| CCACCCATGTTATTATTGGA+AGG | 0.535733 | 4.4:-8026479 | MS.gene49706:CDS |
| TCTTGAGACTTGAAGAGGCT+GGG | 0.541739 | 4.4:+8030074 | None:intergenic |
| CTTCACACTTCAATCAAGAC+GGG | 0.544296 | 4.4:+8025637 | None:intergenic |
| CTGTCTGAATATGCAGGGGT+AGG | 0.544633 | 4.4:+8026512 | None:intergenic |
| GGCAGCCTCTTGAGCAGACA+TGG | 0.544900 | 4.4:+8026367 | None:intergenic |
| AGAGGCAGCAAAGGAGGCAG+AGG | 0.547850 | 4.4:-8026291 | MS.gene49706:CDS |
| CTCTTCAGCTTCTGCTATGG+CGG | 0.551526 | 4.4:+8026310 | None:intergenic |
| GACTGCTCGAGCAGCATATG+CGG | 0.551764 | 4.4:+8026346 | None:intergenic |
| AAGGTCCATGTCTGCTCAAG+AGG | 0.553221 | 4.4:-8026372 | MS.gene49706:CDS |
| ATTTAGAAATAGAAAAGGTA+AGG | 0.556910 | 4.4:-8026391 | MS.gene49706:CDS |
| TGGAGTTGCCAAGCATGGGG+TGG | 0.557397 | 4.4:-8030463 | MS.gene49706:CDS |
| CACCCATGTTATTATTGGAA+GGG | 0.560560 | 4.4:-8026478 | MS.gene49706:CDS |
| GGAGTTGCCAAGCATGGGGT+GGG | 0.561098 | 4.4:-8030462 | MS.gene49706:CDS |
| CTAAAGTATCTTACATCTAG+CGG | 0.565433 | 4.4:-8027497 | MS.gene49706:CDS |
| TCTAGCTTGAATGAGCTTGG+TGG | 0.575119 | 4.4:-8029062 | MS.gene49706:CDS |
| CCTTCCAATAATAACATGGG+TGG | 0.576377 | 4.4:+8026479 | None:intergenic |
| GTAGGACCAATACCGGCCAC+CGG | 0.579738 | 4.4:-8027549 | MS.gene49706:intron |
| TCTTCACACTTCAATCAAGA+CGG | 0.581316 | 4.4:+8025636 | None:intergenic |
| AGCTGCTATGAAAACACTGA+AGG | 0.584250 | 4.4:-8026228 | MS.gene49706:CDS |
| GTCTAAGGGAGCAATCAAAA+GGG | 0.586208 | 4.4:-8030184 | MS.gene49706:CDS |
| TCCTCTGTCTGAATATGCAG+GGG | 0.589128 | 4.4:+8026508 | None:intergenic |
| AGCTCCAGGGAGAAGTCTAA+GGG | 0.592466 | 4.4:-8030198 | MS.gene49706:CDS |
| CCATGTTATTATTGGAAGGG+AGG | 0.596204 | 4.4:-8026475 | MS.gene49706:CDS |
| ATGTCTCTTGAGACTTGAAG+AGG | 0.598346 | 4.4:+8030069 | None:intergenic |
| CTCCCTTCCAATAATAACAT+GGG | 0.599995 | 4.4:+8026476 | None:intergenic |
| ATCATCGGATGGACCAGTAA+CGG | 0.608006 | 4.4:+8030113 | None:intergenic |
| GCTGCTATGAAAACACTGAA+GGG | 0.610961 | 4.4:-8026227 | MS.gene49706:CDS |
| TTATATTTCAGGTGAAACGC+AGG | 0.613161 | 4.4:-8026547 | MS.gene49706:intron |
| ACAATTTCATCATCATCGGA+TGG | 0.613826 | 4.4:+8030102 | None:intergenic |
| CTTCCAATAATAACATGGGT+GGG | 0.618304 | 4.4:+8026480 | None:intergenic |
| GCAGAAATGGACATCAGAAG+AGG | 0.618364 | 4.4:-8030502 | MS.gene49706:CDS |
| GGACCAGGACCAGGAATGTG+CGG | 0.620041 | 4.4:+8030045 | None:intergenic |
| CTGCTATGAAAACACTGAAG+GGG | 0.622542 | 4.4:-8026226 | MS.gene49706:CDS |
| AGCTGGAGTTGCCAAGCATG+GGG | 0.639684 | 4.4:-8030466 | MS.gene49706:CDS |
| GCCAAGACTTACCGTCTCTG+AGG | 0.642080 | 4.4:+8026196 | None:intergenic |
| GGGGAGAAACACCTCAGAGA+CGG | 0.644348 | 4.4:-8026207 | MS.gene49706:intron |
| AACCTCTATGAAATTGGACA+GGG | 0.650684 | 4.4:-8026447 | MS.gene49706:CDS |
| GGGAAATGGATCGAGCTCCA+GGG | 0.651429 | 4.4:-8030211 | MS.gene49706:CDS |
| ACCCCTGCATATTCAGACAG+AGG | 0.679893 | 4.4:-8026509 | MS.gene49706:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAACCAAAAAAAAATAT+GGG | + | chr4.4:8026171-8026190 | None:intergenic | 10.0% |
| !! | TATTTAACCAAAAAAAAATA+TGG | + | chr4.4:8026172-8026191 | None:intergenic | 10.0% |
| !! | TTAAAGAAAAAATAATACTT+TGG | + | chr4.4:8027981-8028000 | None:intergenic | 10.0% |
| !! | TTTACATATGATATTTATTT+AGG | - | chr4.4:8030277-8030296 | MS.gene49706:intron | 10.0% |
| !!! | TATTTTTTTTTGGTTAAATA+TGG | - | chr4.4:8026172-8026191 | MS.gene49706:intron | 10.0% |
| !! | AAATTTGTATAATGTAAACA+TGG | + | chr4.4:8026920-8026939 | None:intergenic | 15.0% |
| !! | AATGTATATTGAATTAATGT+TGG | - | chr4.4:8025861-8025880 | MS.gene49706:intron | 15.0% |
| !! | ACAAATATATATATTCTACA+AGG | + | chr4.4:8029328-8029347 | None:intergenic | 15.0% |
| !! | ATGTAGAAATTACATTATAT+TGG | - | chr4.4:8028448-8028467 | MS.gene49706:intron | 15.0% |
| !! | ATTACAATTTATATAACGAA+TGG | + | chr4.4:8026864-8026883 | None:intergenic | 15.0% |
| !! | CAAATATATATATTCTACAA+GGG | + | chr4.4:8029327-8029346 | None:intergenic | 15.0% |
| !! | TGTTATAGTATTACAATAAA+AGG | + | chr4.4:8030000-8030019 | None:intergenic | 15.0% |
| !!! | AAAGATTAATGTTTTTATGT+TGG | + | chr4.4:8029360-8029379 | None:intergenic | 15.0% |
| !!! | AATTACAATCAAATCATTTT+AGG | + | chr4.4:8030380-8030399 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr4.4:8027877-8027896 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTTAATTCTGATT+AGG | - | chr4.4:8027366-8027385 | MS.gene49706:intron | 15.0% |
| !! | AAATCAAGATAATGAAATCA+GGG | + | chr4.4:8026732-8026751 | None:intergenic | 20.0% |
| !! | AAATTATCCTAAACAACTAT+TGG | + | chr4.4:8028015-8028034 | None:intergenic | 20.0% |
| !! | AATTCATTTAATTCAGTAGT+TGG | - | chr4.4:8027206-8027225 | MS.gene49706:intron | 20.0% |
| !! | ATCTACATATGATACTTATT+TGG | - | chr4.4:8030097-8030116 | MS.gene49706:CDS | 20.0% |
| !! | ATTTAGAAATAGAAAAGGTA+AGG | - | chr4.4:8029775-8029794 | MS.gene49706:intron | 20.0% |
| !! | GAATTAAACAAAAAACATCA+TGG | + | chr4.4:8027361-8027380 | None:intergenic | 20.0% |
| !! | GATAGATTTAGAAATAGAAA+AGG | - | chr4.4:8029770-8029789 | MS.gene49706:intron | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | + | chr4.4:8027951-8027970 | None:intergenic | 20.0% |
| !! | TATTTAATTGCATCTAATAG+CGG | - | chr4.4:8026199-8026218 | MS.gene49706:intron | 20.0% |
| !! | TCTACATATGATACTTATTT+GGG | - | chr4.4:8030098-8030117 | MS.gene49706:CDS | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | + | chr4.4:8027952-8027971 | None:intergenic | 20.0% |
| !!! | AAATTCCATTCAATTTTCAA+TGG | - | chr4.4:8026324-8026343 | MS.gene49706:CDS | 20.0% |
| !!! | AATAGTTGTTTAGGATAATT+TGG | - | chr4.4:8028014-8028033 | MS.gene49706:intron | 20.0% |
| !!! | ATATATCACATTTTACCAAA+GGG | + | chr4.4:8028390-8028409 | None:intergenic | 20.0% |
| !!! | ATTTGATTGTAATTTTGTTG+TGG | - | chr4.4:8030386-8030405 | MS.gene49706:intron | 20.0% |
| !!! | ATTTTCTTCTATACAATTCT+AGG | + | chr4.4:8027812-8027831 | None:intergenic | 20.0% |
| !!! | TTATATTTTCATAAAGCACT+TGG | - | chr4.4:8030240-8030259 | MS.gene49706:CDS | 20.0% |
| !!! | TTCATCATTTTGTATTTTGT+AGG | - | chr4.4:8028599-8028618 | MS.gene49706:intron | 20.0% |
| !!! | TTTTAACAACTACAATCATT+AGG | + | chr4.4:8027252-8027271 | None:intergenic | 20.0% |
| ! | AAAAGGTCTATTGTTAAGTT+TGG | - | chr4.4:8026145-8026164 | MS.gene49706:intron | 25.0% |
| ! | AAACAAACCAATAGTTGTTT+AGG | - | chr4.4:8028005-8028024 | MS.gene49706:intron | 25.0% |
| ! | AAACATAACTTCTAATGTCT+AGG | - | chr4.4:8029235-8029254 | MS.gene49706:intron | 25.0% |
| ! | AAAGCAAAACAAATAAAAGC+TGG | + | chr4.4:8027185-8027204 | None:intergenic | 25.0% |
| ! | AAATCTGTACAATGTAAACA+TGG | + | chr4.4:8027007-8027026 | None:intergenic | 25.0% |
| ! | AACTAGGTACACAAATAATA+TGG | + | chr4.4:8029138-8029157 | None:intergenic | 25.0% |
| ! | AACTTAGAAGAAAAATCACA+TGG | - | chr4.4:8030060-8030079 | MS.gene49706:CDS | 25.0% |
| ! | AATCAAGATAATGAAATCAG+GGG | + | chr4.4:8026731-8026750 | None:intergenic | 25.0% |
| ! | ACAATTTATATAACGAATGG+AGG | + | chr4.4:8026861-8026880 | None:intergenic | 25.0% |
| ! | ACTTAGAAGAAAAATCACAT+GGG | - | chr4.4:8030061-8030080 | MS.gene49706:CDS | 25.0% |
| ! | AGACATTAGAAGTTATGTTT+AGG | + | chr4.4:8029235-8029254 | None:intergenic | 25.0% |
| ! | ATACCAAATAATCACTAAGA+TGG | + | chr4.4:8030442-8030461 | None:intergenic | 25.0% |
| ! | ATCAACAATTTCATCATCAT+CGG | + | chr4.4:8026071-8026090 | None:intergenic | 25.0% |
| ! | ATCTACTTTAATAGTGCTAT+CGG | - | chr4.4:8026636-8026655 | MS.gene49706:intron | 25.0% |
| ! | ATGAGAATAGCATCAAAATA+TGG | + | chr4.4:8029544-8029563 | None:intergenic | 25.0% |
| ! | ATTATAGCATTACATTTGGT+TGG | - | chr4.4:8028516-8028535 | MS.gene49706:intron | 25.0% |
| ! | CAAATCAAGATAATGAAATC+AGG | + | chr4.4:8026733-8026752 | None:intergenic | 25.0% |
| ! | CAATTCCATTGAAAATTGAA+TGG | + | chr4.4:8026332-8026351 | None:intergenic | 25.0% |
| ! | CAGATTAGATAACCTTATAT+TGG | - | chr4.4:8027073-8027092 | MS.gene49706:intron | 25.0% |
| ! | CTATAACATGATACATCAAT+AGG | - | chr4.4:8030012-8030031 | MS.gene49706:intron | 25.0% |
| ! | CTTTGGTAAAATGTGATATA+TGG | - | chr4.4:8028389-8028408 | MS.gene49706:intron | 25.0% |
| ! | GAAGATAATTGAGATATTTG+AGG | - | chr4.4:8026385-8026404 | MS.gene49706:CDS | 25.0% |
| ! | TAAAAATCTCATGTCCATAT+TGG | - | chr4.4:8027329-8027348 | MS.gene49706:intron | 25.0% |
| ! | TAATCTGTATAATGCAAACA+TGG | + | chr4.4:8027060-8027079 | None:intergenic | 25.0% |
| ! | TAGATATAGCTTCCAATATA+AGG | + | chr4.4:8027088-8027107 | None:intergenic | 25.0% |
| ! | TATTGTATGTATGCATTAGA+TGG | + | chr4.4:8028744-8028763 | None:intergenic | 25.0% |
| ! | TTGGATTATAGCATTACATT+TGG | - | chr4.4:8028512-8028531 | MS.gene49706:intron | 25.0% |
| !! | AACTTAACAATAGACCTTTT+TGG | + | chr4.4:8026145-8026164 | None:intergenic | 25.0% |
| !! | ATTTTGTATTAAACCGTGAA+TGG | + | chr4.4:8026259-8026278 | None:intergenic | 25.0% |
| !! | CATATATCACATTTTACCAA+AGG | + | chr4.4:8028391-8028410 | None:intergenic | 25.0% |
| !! | CATTCAATTTTCAATGGAAT+TGG | - | chr4.4:8026330-8026349 | MS.gene49706:CDS | 25.0% |
| !! | GTATTTCTATCAAATAGATG+TGG | - | chr4.4:8030458-8030477 | MS.gene49706:CDS | 25.0% |
| !! | TTTCAAATGTGATTTTGTTG+CGG | - | chr4.4:8030211-8030230 | MS.gene49706:CDS | 25.0% |
| !! | TTTGATGCTATTCTCATTTT+TGG | - | chr4.4:8029547-8029566 | MS.gene49706:intron | 25.0% |
| !! | TTTTACAACTCTACATTTTC+TGG | - | chr4.4:8029433-8029452 | MS.gene49706:intron | 25.0% |
| !! | TTTTTCCATGAACCATAAAA+CGG | + | chr4.4:8028918-8028937 | None:intergenic | 25.0% |
| !!! | AGATATTCTAAAACACTGTA+TGG | + | chr4.4:8027309-8027328 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAATGTCACTTT+CGG | - | chr4.4:8027888-8027907 | MS.gene49706:intron | 25.0% |
| AAAAAACTCAAGGCTCATAT+TGG | - | chr4.4:8029197-8029216 | MS.gene49706:intron | 30.0% | |
| AAAATGGCGTACAATAATCA+AGG | - | chr4.4:8025727-8025746 | MS.gene49706:intron | 30.0% | |
| AAATCTATCTCAGACTTTGT+AGG | + | chr4.4:8029759-8029778 | None:intergenic | 30.0% | |
| AACAAGACACGATTAAATTC+AGG | + | chr4.4:8025755-8025774 | None:intergenic | 30.0% | |
| AACTATTGCTTCTTTCATAG+AGG | - | chr4.4:8027139-8027158 | MS.gene49706:intron | 30.0% | |
| AATAGCGTGTGTTGAAATTT+GGG | - | chr4.4:8026956-8026975 | MS.gene49706:intron | 30.0% | |
| AATCTATCTCAGACTTTGTA+GGG | + | chr4.4:8029758-8029777 | None:intergenic | 30.0% | |
| ACCATTAGATCCACATTTAA+CGG | + | chr4.4:8025888-8025907 | None:intergenic | 30.0% | |
| ATCAAGATAATGAAATCAGG+GGG | + | chr4.4:8026730-8026749 | None:intergenic | 30.0% | |
| ATCTTTACTATGTACTGCTT+AGG | - | chr4.4:8029374-8029393 | MS.gene49706:intron | 30.0% | |
| ATGCCATCTTAGTGATTATT+TGG | - | chr4.4:8030436-8030455 | MS.gene49706:CDS | 30.0% | |
| CAATTAGAGATCTTACTCAT+GGG | - | chr4.4:8029589-8029608 | MS.gene49706:intron | 30.0% | |
| GAGTGTTATAGCATTACATT+TGG | - | chr4.4:8028489-8028508 | MS.gene49706:intron | 30.0% | |
| GGTGTAATAGAAAAAACTCA+AGG | - | chr4.4:8029187-8029206 | MS.gene49706:intron | 30.0% | |
| GTTATAGCATTACATTTGGT+TGG | - | chr4.4:8028493-8028512 | MS.gene49706:intron | 30.0% | |
| TAAATGTGGATCTAATGGTT+TGG | - | chr4.4:8025889-8025908 | MS.gene49706:intron | 30.0% | |
| TAGGTACACAAATAATATGG+TGG | + | chr4.4:8029135-8029154 | None:intergenic | 30.0% | |
| TCAATTAGAGATCTTACTCA+TGG | - | chr4.4:8029588-8029607 | MS.gene49706:intron | 30.0% | |
| TCAATTATCTTCCACTTTCA+GGG | + | chr4.4:8026377-8026396 | None:intergenic | 30.0% | |
| TGTCTACTTTGTAAGGTTTA+AGG | + | chr4.4:8029302-8029321 | None:intergenic | 30.0% | |
| ! | ACTGGTTAGTATTTTGTATG+AGG | - | chr4.4:8027581-8027600 | MS.gene49706:intron | 30.0% |
| ! | ATTTTCAATGGAATTGGATC+CGG | - | chr4.4:8026336-8026355 | MS.gene49706:CDS | 30.0% |
| ! | CTAAAGTATCTTACATCTAG+CGG | - | chr4.4:8028669-8028688 | MS.gene49706:intron | 30.0% |
| ! | CTGGTTAGTATTTTGTATGA+GGG | - | chr4.4:8027582-8027601 | MS.gene49706:intron | 30.0% |
| !! | CAATTCTAGGACTATAAACA+AGG | + | chr4.4:8027799-8027818 | None:intergenic | 30.0% |
| !! | GAGTTGATATTAGTACAAAG+AGG | - | chr4.4:8027388-8027407 | MS.gene49706:intron | 30.0% |
| !! | GATTGTAATTTTGTTGTGGT+GGG | - | chr4.4:8030390-8030409 | MS.gene49706:CDS | 30.0% |
| !! | TGATTGTAATTTTGTTGTGG+TGG | - | chr4.4:8030389-8030408 | MS.gene49706:CDS | 30.0% |
| !! | TGGGTTGAGTTTTATATTTC+AGG | - | chr4.4:8029608-8029627 | MS.gene49706:intron | 30.0% |
| !!! | AAGCGACACTTATTTTGAAA+CGG | - | chr4.4:8028105-8028124 | MS.gene49706:intron | 30.0% |
| !!! | CAGTTTTTTGCTAAAAGATG+AGG | - | chr4.4:8026475-8026494 | MS.gene49706:CDS | 30.0% |
| !!! | GTTTGGCCCATATTTTTTTT+TGG | - | chr4.4:8026162-8026181 | MS.gene49706:intron | 30.0% |
| !!! | TACTGTTGTTTTACCATTCA+CGG | - | chr4.4:8026243-8026262 | MS.gene49706:CDS | 30.0% |
| AAACCTCTATGAAATTGGAC+AGG | - | chr4.4:8029718-8029737 | MS.gene49706:intron | 35.0% | |
| AACATGGTTAAGCATACTGT+TGG | + | chr4.4:8026991-8027010 | None:intergenic | 35.0% | |
| AACCTCTATGAAATTGGACA+GGG | - | chr4.4:8029719-8029738 | MS.gene49706:intron | 35.0% | |
| AAGACCCATTTCCAAAATGT+GGG | - | chr4.4:8027486-8027505 | MS.gene49706:CDS | 35.0% | |
| AAGGGTTTGTCTACTTTGTA+AGG | + | chr4.4:8029309-8029328 | None:intergenic | 35.0% | |
| AATCAAAAGGGTGAATCATC+CGG | - | chr4.4:8025994-8026013 | MS.gene49706:intron | 35.0% | |
| AATCAGGACCAAAAAGACAA+AGG | - | chr4.4:8029077-8029096 | MS.gene49706:CDS | 35.0% | |
| ACAATTTCATCATCATCGGA+TGG | + | chr4.4:8026067-8026086 | None:intergenic | 35.0% | |
| ACCGTTAAATGTGGATCTAA+TGG | - | chr4.4:8025884-8025903 | MS.gene49706:intron | 35.0% | |
| AGCAAAAAACTGTTCCATGA+TGG | + | chr4.4:8026467-8026486 | None:intergenic | 35.0% | |
| AGTCTCTTCGGATAGAAATA+AGG | - | chr4.4:8028993-8029012 | MS.gene49706:intron | 35.0% | |
| ATAGAGTTGTCATCCTGTTT+CGG | + | chr4.4:8026022-8026041 | None:intergenic | 35.0% | |
| ATAGCGTGTGTTGAAATTTG+GGG | - | chr4.4:8026957-8026976 | MS.gene49706:intron | 35.0% | |
| ATCAGGACCAAAAAGACAAA+GGG | - | chr4.4:8029078-8029097 | MS.gene49706:CDS | 35.0% | |
| ATGGAGAAATTTGAGTGTGA+CGG | - | chr4.4:8025934-8025953 | MS.gene49706:intron | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | + | chr4.4:8028079-8028098 | None:intergenic | 35.0% | |
| CAAATTTCAACACACGCTAT+TGG | + | chr4.4:8026957-8026976 | None:intergenic | 35.0% | |
| CAATAGCGTGTGTTGAAATT+TGG | - | chr4.4:8026955-8026974 | MS.gene49706:intron | 35.0% | |
| CACCCATGTTATTATTGGAA+GGG | - | chr4.4:8029688-8029707 | MS.gene49706:intron | 35.0% | |
| CATCATGGAATATGCCAATA+TGG | + | chr4.4:8027346-8027365 | None:intergenic | 35.0% | |
| CGGCTATTGTCTTTCAATTA+GGG | - | chr4.4:8026656-8026675 | MS.gene49706:intron | 35.0% | |
| CTAACCAGTATTTGTACTAG+AGG | + | chr4.4:8027570-8027589 | None:intergenic | 35.0% | |
| CTCAATTATCTTCCACTTTC+AGG | + | chr4.4:8026378-8026397 | None:intergenic | 35.0% | |
| CTCCCTTCCAATAATAACAT+GGG | + | chr4.4:8029693-8029712 | None:intergenic | 35.0% | |
| CTTCATCAAACCAACTTCTA+CGG | + | chr4.4:8029054-8029073 | None:intergenic | 35.0% | |
| CTTCCAATAATAACATGGGT+GGG | + | chr4.4:8029689-8029708 | None:intergenic | 35.0% | |
| GAAATGGGTCTTACATAAAG+TGG | + | chr4.4:8027478-8027497 | None:intergenic | 35.0% | |
| GATGTTCTATTCTGCAAACA+AGG | + | chr4.4:8026619-8026638 | None:intergenic | 35.0% | |
| GCAGAAAACCTCTATGAAAT+TGG | - | chr4.4:8029713-8029732 | MS.gene49706:intron | 35.0% | |
| GGATATCCCATTTATAGTAG+AGG | - | chr4.4:8028839-8028858 | MS.gene49706:intron | 35.0% | |
| GGCTATTGTCTTTCAATTAG+GGG | - | chr4.4:8026657-8026676 | MS.gene49706:intron | 35.0% | |
| GGGAAAAATCAAAGTCTCTT+CGG | - | chr4.4:8028981-8029000 | MS.gene49706:intron | 35.0% | |
| TAAGACCCATTTCCAAAATG+TGG | - | chr4.4:8027485-8027504 | MS.gene49706:CDS | 35.0% | |
| TAATGTTGGACCGTTAAATG+TGG | - | chr4.4:8025875-8025894 | MS.gene49706:intron | 35.0% | |
| TCAAGATAATGAAATCAGGG+GGG | + | chr4.4:8026729-8026748 | None:intergenic | 35.0% | |
| TCATTCGATGAAATCCATGT+GGG | - | chr4.4:8027447-8027466 | MS.gene49706:intron | 35.0% | |
| TCGGCTATTGTCTTTCAATT+AGG | - | chr4.4:8026655-8026674 | MS.gene49706:intron | 35.0% | |
| TCTATCCTAGACACATGAAT+GGG | - | chr4.4:8029109-8029128 | MS.gene49706:intron | 35.0% | |
| TCTCTCTTATTAGGTGAAAC+CGG | + | chr4.4:8027519-8027538 | None:intergenic | 35.0% | |
| TGGTTTGATGAAGTTGAATC+AGG | - | chr4.4:8029061-8029080 | MS.gene49706:CDS | 35.0% | |
| TTCCAACACTCTCTCTTATT+AGG | + | chr4.4:8027528-8027547 | None:intergenic | 35.0% | |
| TTCCTTAATCTGTGTGCAAT+TGG | - | chr4.4:8028079-8028098 | MS.gene49706:intron | 35.0% | |
| TTGCAAATTATCCCTGAAAG+TGG | - | chr4.4:8026363-8026382 | MS.gene49706:CDS | 35.0% | |
| ! | AAATGTGATTTTGTTGCGGA+GGG | - | chr4.4:8030215-8030234 | MS.gene49706:CDS | 35.0% |
| ! | AAGACGTAGTGGAATAGTAT+TGG | - | chr4.4:8028960-8028979 | MS.gene49706:intron | 35.0% |
| ! | ACTAATGCCCTTTGTCTTTT+TGG | + | chr4.4:8029088-8029107 | None:intergenic | 35.0% |
| ! | AGACGTAGTGGAATAGTATT+GGG | - | chr4.4:8028961-8028980 | MS.gene49706:intron | 35.0% |
| ! | AGGGATAATTTGCAAAACTC+CGG | + | chr4.4:8026358-8026377 | None:intergenic | 35.0% |
| ! | ATATCTAGCTTGAATGAGCT+TGG | - | chr4.4:8027101-8027120 | MS.gene49706:intron | 35.0% |
| ! | CAAATAGCTCTGCTTCATAA+TGG | + | chr4.4:8028239-8028258 | None:intergenic | 35.0% |
| ! | CTTTACATCCCCTATCTTTT+GGG | - | chr4.4:8028871-8028890 | MS.gene49706:intron | 35.0% |
| ! | GATTTGCTTGCATTCTATAG+AGG | - | chr4.4:8026747-8026766 | MS.gene49706:intron | 35.0% |
| ! | GTATTTTGTAGGACCAATAC+CGG | - | chr4.4:8028610-8028629 | MS.gene49706:intron | 35.0% |
| ! | TCTAGGACTATAAACAAGGA+TGG | + | chr4.4:8027795-8027814 | None:intergenic | 35.0% |
| ! | TCTTTACATCCCCTATCTTT+TGG | - | chr4.4:8028870-8028889 | MS.gene49706:intron | 35.0% |
| ! | TGTGGTTTGGATAGGATAAA+TGG | - | chr4.4:8025915-8025934 | MS.gene49706:intron | 35.0% |
| ! | TTATATTTCAGGTGAAACGC+AGG | - | chr4.4:8029619-8029638 | MS.gene49706:intron | 35.0% |
| ! | TTTGGTTATGTGGTTTGGAT+AGG | - | chr4.4:8025907-8025926 | MS.gene49706:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4.4:8027851-8027870 | None:intergenic | 35.0% |
| !! | AATGGTTTGGTTATGTGGTT+TGG | - | chr4.4:8025902-8025921 | MS.gene49706:intron | 35.0% |
| !! | GATCTAATGGTTTGGTTATG+TGG | - | chr4.4:8025897-8025916 | MS.gene49706:intron | 35.0% |
| !! | GCTCATATTGGTGTTAGATA+AGG | - | chr4.4:8029209-8029228 | MS.gene49706:intron | 35.0% |
| !! | GCTTTGATTTTTCTAAGTCG+AGG | - | chr4.4:8028213-8028232 | MS.gene49706:intron | 35.0% |
| !! | TCATTTACTCTAAGACGTAG+TGG | - | chr4.4:8028949-8028968 | MS.gene49706:intron | 35.0% |
| !!! | AACAACTTTTTGAAGTCTGC+CGG | + | chr4.4:8028639-8028658 | None:intergenic | 35.0% |
| !!! | GACACTTATTTTGAAACGGA+GGG | - | chr4.4:8028109-8028128 | MS.gene49706:intron | 35.0% |
| AAGATAGGGGATGTAAAGAC+AGG | + | chr4.4:8028869-8028888 | None:intergenic | 40.0% | |
| ACACCCACCCATGTTATTAT+TGG | - | chr4.4:8029683-8029702 | MS.gene49706:intron | 40.0% | |
| AGCCAATTGCACACAGATTA+AGG | + | chr4.4:8028084-8028103 | None:intergenic | 40.0% | |
| AGCTGCTATGAAAACACTGA+AGG | - | chr4.4:8029938-8029957 | MS.gene49706:intron | 40.0% | |
| AGGTCAGCCTCTACTATAAA+TGG | + | chr4.4:8028849-8028868 | None:intergenic | 40.0% | |
| AGTCTAAGGGAGCAATCAAA+AGG | - | chr4.4:8025981-8026000 | MS.gene49706:intron | 40.0% | |
| ATCCCTGTCCAATTTCATAG+AGG | + | chr4.4:8029724-8029743 | None:intergenic | 40.0% | |
| ATCTAGCGGAAAACTGATCA+AGG | - | chr4.4:8028683-8028702 | MS.gene49706:intron | 40.0% | |
| ATGTCTCTTGAGACTTGAAG+AGG | + | chr4.4:8026100-8026119 | None:intergenic | 40.0% | |
| ATTGCATCTAATAGCGGTAG+AGG | - | chr4.4:8026205-8026224 | MS.gene49706:intron | 40.0% | |
| CAAATTTCGCTTTGCTACAG+TGG | + | chr4.4:8026536-8026555 | None:intergenic | 40.0% | |
| CACTCCTCTAGTACAAATAC+TGG | - | chr4.4:8027563-8027582 | MS.gene49706:intron | 40.0% | |
| CCACCCATGTTATTATTGGA+AGG | - | chr4.4:8029687-8029706 | MS.gene49706:intron | 40.0% | |
| CCATGTTATTATTGGAAGGG+AGG | - | chr4.4:8029691-8029710 | MS.gene49706:intron | 40.0% | |
| CCTCCCTTCCAATAATAACA+TGG | + | chr4.4:8029694-8029713 | None:intergenic | 40.0% | |
| CCTTCCAATAATAACATGGG+TGG | + | chr4.4:8029690-8029709 | None:intergenic | 40.0% | |
| CTCATTCGATGAAATCCATG+TGG | - | chr4.4:8027446-8027465 | MS.gene49706:intron | 40.0% | |
| CTGCTATGAAAACACTGAAG+GGG | - | chr4.4:8029940-8029959 | MS.gene49706:intron | 40.0% | |
| GAAACAGGATGACAACTCTA+TGG | - | chr4.4:8026021-8026040 | MS.gene49706:intron | 40.0% | |
| GCTGCTATGAAAACACTGAA+GGG | - | chr4.4:8029939-8029958 | MS.gene49706:intron | 40.0% | |
| GGACTTTCACTTTACCATCA+TGG | - | chr4.4:8026450-8026469 | MS.gene49706:CDS | 40.0% | |
| GGATAGAAATAAGGCCTAAG+TGG | - | chr4.4:8029002-8029021 | MS.gene49706:intron | 40.0% | |
| GGTCAGCCTCTACTATAAAT+GGG | + | chr4.4:8028848-8028867 | None:intergenic | 40.0% | |
| GTACCTAGTTCAGTAGTGTT+GGG | - | chr4.4:8029148-8029167 | MS.gene49706:intron | 40.0% | |
| GTCTAAGGGAGCAATCAAAA+GGG | - | chr4.4:8025982-8026001 | MS.gene49706:intron | 40.0% | |
| GTCTATCCTAGACACATGAA+TGG | - | chr4.4:8029108-8029127 | MS.gene49706:intron | 40.0% | |
| GTCTATGACCTCCATATCAT+TGG | + | chr4.4:8027637-8027656 | None:intergenic | 40.0% | |
| TAAGGTGGCTACCAATGATA+TGG | - | chr4.4:8027623-8027642 | MS.gene49706:intron | 40.0% | |
| TCCATATAACCTGCTTGTGA+GGG | - | chr4.4:8030147-8030166 | MS.gene49706:CDS | 40.0% | |
| TCTGATGTCCATTTCTGCTT+AGG | + | chr4.4:8025662-8025681 | None:intergenic | 40.0% | |
| TGGAGAAATTTGAGTGTGAC+GGG | - | chr4.4:8025935-8025954 | MS.gene49706:intron | 40.0% | |
| TGTACCTAGTTCAGTAGTGT+TGG | - | chr4.4:8029147-8029166 | MS.gene49706:intron | 40.0% | |
| TTCCATATAACCTGCTTGTG+AGG | - | chr4.4:8030146-8030165 | MS.gene49706:CDS | 40.0% | |
| TTCCTCTGTCTGAATATGCA+GGG | + | chr4.4:8029662-8029681 | None:intergenic | 40.0% | |
| TTGCATCTAATAGCGGTAGA+GGG | - | chr4.4:8026206-8026225 | MS.gene49706:intron | 40.0% | |
| ! | AATTTGAGTGTGACGGGAAA+TGG | - | chr4.4:8025941-8025960 | MS.gene49706:intron | 40.0% |
| ! | ACAATAGACCTTTTTGGACC+AGG | + | chr4.4:8026139-8026158 | None:intergenic | 40.0% |
| ! | CAAATGTGATTTTGTTGCGG+AGG | - | chr4.4:8030214-8030233 | MS.gene49706:CDS | 40.0% |
| ! | CACCTAATAAGAGAGAGTGT+TGG | - | chr4.4:8027523-8027542 | MS.gene49706:CDS | 40.0% |
| ! | TGTGGTGGGATTTATCATTC+AGG | - | chr4.4:8030404-8030423 | MS.gene49706:CDS | 40.0% |
| ! | TTTTGTCCAATCACCAGTGT+GGG | - | chr4.4:8028811-8028830 | MS.gene49706:intron | 40.0% |
| ! | TTTTTGTCCAATCACCAGTG+TGG | - | chr4.4:8028810-8028829 | MS.gene49706:intron | 40.0% |
| !! | ATTTGTACTAGAGGAGTGCT+AGG | + | chr4.4:8027561-8027580 | None:intergenic | 40.0% |
| !! | CAACTCTACATTTTCTGGTG+TGG | - | chr4.4:8029438-8029457 | MS.gene49706:intron | 40.0% |
| !! | GGATCCCACATTTTGGAAAT+GGG | + | chr4.4:8027493-8027512 | None:intergenic | 40.0% |
| !! | TGGATCCCACATTTTGGAAA+TGG | + | chr4.4:8027494-8027513 | None:intergenic | 40.0% |
| !!! | CGACACTTATTTTGAAACGG+AGG | - | chr4.4:8028108-8028127 | MS.gene49706:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4.4:8027847-8027866 | None:intergenic | 40.0% |
| !!! | TATTTTGAAACGGAGGGAGT+AGG | - | chr4.4:8028115-8028134 | MS.gene49706:intron | 40.0% |
| !!! | TTCTCTACAGTGCCGTTTTA+TGG | - | chr4.4:8028903-8028922 | MS.gene49706:intron | 40.0% |
| AAAGTGAAAGTCCCACCTTG+TGG | + | chr4.4:8026443-8026462 | None:intergenic | 45.0% | |
| AACCCACTCCCAAAAGATAG+GGG | + | chr4.4:8028882-8028901 | None:intergenic | 45.0% | |
| AAGTGGAGCTTGTAAAGCCT+GGG | - | chr4.4:8029019-8029038 | MS.gene49706:intron | 45.0% | |
| ACACCCAACACTACTGAACT+AGG | + | chr4.4:8029154-8029173 | None:intergenic | 45.0% | |
| AGAACCCACTCCCAAAAGAT+AGG | + | chr4.4:8028884-8028903 | None:intergenic | 45.0% | |
| AGGCTTTACAAGCTCCACTT+AGG | + | chr4.4:8029019-8029038 | None:intergenic | 45.0% | |
| AGGGACATTCGAAACAGCTA+AGG | + | chr4.4:8028371-8028390 | None:intergenic | 45.0% | |
| ATAAAGTGGTGAGACCCACA+TGG | + | chr4.4:8027464-8027483 | None:intergenic | 45.0% | |
| ATCATCGGATGGACCAGTAA+CGG | + | chr4.4:8026056-8026075 | None:intergenic | 45.0% | |
| ATTTATTACTCCAGCGCACG+AGG | + | chr4.4:8027737-8027756 | None:intergenic | 45.0% | |
| CAATGTGACTACCATCGCTT+CGG | - | chr4.4:8026411-8026430 | MS.gene49706:CDS | 45.0% | |
| CTTATTAGGTGAAACCGGTG+TGG | + | chr4.4:8027514-8027533 | None:intergenic | 45.0% | |
| CTTCCTCTGTCTGAATATGC+AGG | + | chr4.4:8029663-8029682 | None:intergenic | 45.0% | |
| GAACCCACTCCCAAAAGATA+GGG | + | chr4.4:8028883-8028902 | None:intergenic | 45.0% | |
| GCAGAAATGGACATCAGAAG+AGG | - | chr4.4:8025664-8025683 | MS.gene49706:intron | 45.0% | |
| GCAGAGCTATTTGCACAATG+AGG | - | chr4.4:8028246-8028265 | MS.gene49706:intron | 45.0% | |
| TAACCAGGTTTCAGAAGGCA+TGG | + | chr4.4:8028303-8028322 | None:intergenic | 45.0% | |
| TAAGTGGAGCTTGTAAAGCC+TGG | - | chr4.4:8029018-8029037 | MS.gene49706:intron | 45.0% | |
| TCAAACCAACTTCTACGGTG+AGG | + | chr4.4:8029049-8029068 | None:intergenic | 45.0% | |
| TCCTCTGTCTGAATATGCAG+GGG | + | chr4.4:8029661-8029680 | None:intergenic | 45.0% | |
| TCGCTCAAATGTCGATCTCA+AGG | - | chr4.4:8025778-8025797 | MS.gene49706:intron | 45.0% | |
| TCTTGAGACTTGAAGAGGCT+GGG | + | chr4.4:8026095-8026114 | None:intergenic | 45.0% | |
| TTCAGGTGAAACGCAGGTAT+AGG | - | chr4.4:8029625-8029644 | MS.gene49706:intron | 45.0% | |
| TTGTCATCCTGTTTCGGTAC+CGG | + | chr4.4:8026016-8026035 | None:intergenic | 45.0% | |
| ! | AGCTGTTTCGAATGTCCCTT+TGG | - | chr4.4:8028372-8028391 | MS.gene49706:intron | 45.0% |
| ! | TCTAGCTTGAATGAGCTTGG+TGG | - | chr4.4:8027104-8027123 | MS.gene49706:intron | 45.0% |
| !! | ATCCCCTATCTTTTGGGAGT+GGG | - | chr4.4:8028877-8028896 | MS.gene49706:intron | 45.0% |
| !!! | AACTTTTTGAAGTCTGCCGG+TGG | + | chr4.4:8028636-8028655 | None:intergenic | 45.0% |
| !!! | CAGTGCCGTTTTATGGTTCA+TGG | - | chr4.4:8028910-8028929 | MS.gene49706:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4.4:8027848-8027867 | None:intergenic | 45.0% |
| !! | AAAAACAAATAAAATAAAAA+TGG | + | chr4.4:8030307-8030326 | None:intergenic | 5.0% |
| !! | AAAAACAAATAAAATAAAAT+CGG | + | chr4.4:8030128-8030147 | None:intergenic | 5.0% |
| AAAGCTGGAGTTGCCAAGCA+TGG | - | chr4.4:8025698-8025717 | MS.gene49706:intron | 50.0% | |
| AAAGTCCCACCTTGTGGTGT+TGG | + | chr4.4:8026437-8026456 | None:intergenic | 50.0% | |
| AACCACAAGTCGCAGTAACC+AGG | + | chr4.4:8028318-8028337 | None:intergenic | 50.0% | |
| AACCTGGTTACTGCGACTTG+TGG | - | chr4.4:8028313-8028332 | MS.gene49706:intron | 50.0% | |
| AAGCTGGAGTTGCCAAGCAT+GGG | - | chr4.4:8025699-8025718 | MS.gene49706:intron | 50.0% | |
| AAGGTCCATGTCTGCTCAAG+AGG | - | chr4.4:8029794-8029813 | MS.gene49706:intron | 50.0% | |
| ACCCCTGCATATTCAGACAG+AGG | - | chr4.4:8029657-8029676 | MS.gene49706:intron | 50.0% | |
| ACCTCAGAGACGGTAAGTCT+TGG | - | chr4.4:8029969-8029988 | MS.gene49706:intron | 50.0% | |
| AGAAGCTGAAGAGGCAGCAA+AGG | - | chr4.4:8029866-8029885 | MS.gene49706:intron | 50.0% | |
| AGCTCCAGGGAGAAGTCTAA+GGG | - | chr4.4:8025968-8025987 | MS.gene49706:intron | 50.0% | |
| ATGGCTATCACTGCCGTTAC+TGG | - | chr4.4:8026040-8026059 | MS.gene49706:intron | 50.0% | |
| CAAGCAGAGAGGCTGTTACA+AGG | + | chr4.4:8027666-8027685 | None:intergenic | 50.0% | |
| CCAAAATGTGGGATCCACAC+CGG | - | chr4.4:8027497-8027516 | MS.gene49706:CDS | 50.0% | |
| CCAAACACAACCCGACAAAG+CGG | + | chr4.4:8029279-8029298 | None:intergenic | 50.0% | |
| CGACTTGTGGTTTCTGTGAG+TGG | - | chr4.4:8028326-8028345 | MS.gene49706:intron | 50.0% | |
| CGCAGTAACCAGGTTTCAGA+AGG | + | chr4.4:8028308-8028327 | None:intergenic | 50.0% | |
| CTCTTCAGCTTCTGCTATGG+CGG | + | chr4.4:8029859-8029878 | None:intergenic | 50.0% | |
| CTCTTGAGACTTGAAGAGGC+TGG | + | chr4.4:8026096-8026115 | None:intergenic | 50.0% | |
| CTGTCTGAATATGCAGGGGT+AGG | + | chr4.4:8029657-8029676 | None:intergenic | 50.0% | |
| GAGGAAGCAGCTCTTAAAGC+TGG | - | chr4.4:8025683-8025702 | MS.gene49706:intron | 50.0% | |
| GCAATCCTCACCGTAGAAGT+TGG | - | chr4.4:8029041-8029060 | MS.gene49706:CDS | 50.0% | |
| GCCCTCACAAGCAGGTTATA+TGG | + | chr4.4:8030151-8030170 | None:intergenic | 50.0% | |
| GCGTGTGTTGAAATTTGGGG+CGG | - | chr4.4:8026960-8026979 | MS.gene49706:intron | 50.0% | |
| GGTGGCTACCAATGATATGG+AGG | - | chr4.4:8027626-8027645 | MS.gene49706:intron | 50.0% | |
| TGCCTCTTCAGCTTCTGCTA+TGG | + | chr4.4:8029862-8029881 | None:intergenic | 50.0% | |
| TGCTTTATGCCCTCACAAGC+AGG | + | chr4.4:8030338-8030357 | None:intergenic | 50.0% | |
| TGGGTGCTCCTAAGCAGAAA+TGG | - | chr4.4:8025651-8025670 | MS.gene49706:intron | 50.0% | |
| TGTAACAGCCTCTCTGCTTG+CGG | - | chr4.4:8027666-8027685 | MS.gene49706:intron | 50.0% | |
| TTCCTGGTCCTGGTCCAAAA+AGG | - | chr4.4:8026128-8026147 | MS.gene49706:intron | 50.0% | |
| TTGCTACAGTGGCAAACTGC+TGG | + | chr4.4:8026525-8026544 | None:intergenic | 50.0% | |
| ! | AACCTGCTTGTGAGGGCATA+AGG | - | chr4.4:8030154-8030173 | MS.gene49706:CDS | 50.0% |
| ! | ACCTTTCAAGCCGCTTTGTC+GGG | - | chr4.4:8029266-8029285 | MS.gene49706:intron | 50.0% |
| ! | ATTTTGTATGAGGGCGAGCC+TGG | - | chr4.4:8027591-8027610 | MS.gene49706:intron | 50.0% |
| ! | CACCTTTCAAGCCGCTTTGT+CGG | - | chr4.4:8029265-8029284 | MS.gene49706:intron | 50.0% |
| ! | GAATCATCCGGTACCGAAAC+AGG | - | chr4.4:8026006-8026025 | MS.gene49706:intron | 50.0% |
| ! | GTTCAGTAGTGTTGGGTGTG+AGG | - | chr4.4:8029155-8029174 | MS.gene49706:intron | 50.0% |
| ! | TTTTGTATGAGGGCGAGCCT+GGG | - | chr4.4:8027592-8027611 | MS.gene49706:intron | 50.0% |
| !! | ACTCCATGCCTTCTGAAACC+TGG | - | chr4.4:8028297-8028316 | MS.gene49706:intron | 50.0% |
| !! | CATCCCCTATCTTTTGGGAG+TGG | - | chr4.4:8028876-8028895 | MS.gene49706:intron | 50.0% |
| ACCCGACAAAGCGGCTTGAA+AGG | + | chr4.4:8029270-8029289 | None:intergenic | 55.0% | |
| AGAGACATGCCGCACATTCC+TGG | - | chr4.4:8026112-8026131 | MS.gene49706:intron | 55.0% | |
| AGCTGAAGAGGCAGCAAAGG+AGG | - | chr4.4:8029869-8029888 | MS.gene49706:intron | 55.0% | |
| AGCTGGAGTTGCCAAGCATG+GGG | - | chr4.4:8025700-8025719 | MS.gene49706:intron | 55.0% | |
| AGGATCCCACGTGGGATCTA+GGG | + | chr4.4:8027717-8027736 | None:intergenic | 55.0% | |
| CAATCACCAGTGTGGGTGCA+TGG | - | chr4.4:8028818-8028837 | MS.gene49706:intron | 55.0% | |
| CATGCACCCACACTGGTGAT+TGG | + | chr4.4:8028820-8028839 | None:intergenic | 55.0% | |
| CCAAGCATGGGGTGGGAAAA+TGG | - | chr4.4:8025711-8025730 | MS.gene49706:intron | 55.0% | |
| CGCCATAGCAGAAGCTGAAG+AGG | - | chr4.4:8029857-8029876 | MS.gene49706:intron | 55.0% | |
| GACTGCTCGAGCAGCATATG+CGG | + | chr4.4:8029823-8029842 | None:intergenic | 55.0% | |
| GAGCTCCAGGGAGAAGTCTA+AGG | - | chr4.4:8025967-8025986 | MS.gene49706:intron | 55.0% | |
| GCCAAGACTTACCGTCTCTG+AGG | + | chr4.4:8029973-8029992 | None:intergenic | 55.0% | |
| GGATATCCATGCACCCACAC+TGG | + | chr4.4:8028827-8028846 | None:intergenic | 55.0% | |
| GGGAAATGGATCGAGCTCCA+GGG | - | chr4.4:8025955-8025974 | MS.gene49706:intron | 55.0% | |
| GGGGAGAAACACCTCAGAGA+CGG | - | chr4.4:8029959-8029978 | MS.gene49706:intron | 55.0% | |
| GGTGGCCCATTCATGTGTCT+AGG | + | chr4.4:8029117-8029136 | None:intergenic | 55.0% | |
| GTAACAGCCTCTCTGCTTGC+GGG | - | chr4.4:8027667-8027686 | MS.gene49706:intron | 55.0% | |
| TACTGCTTAGGCACAGCTGC+TGG | - | chr4.4:8029386-8029405 | MS.gene49706:intron | 55.0% | |
| TGCCTTATGCCCTCACAAGC+AGG | + | chr4.4:8030159-8030178 | None:intergenic | 55.0% | |
| TGCTCCCTTAGACTTCTCCC+TGG | + | chr4.4:8025975-8025994 | None:intergenic | 55.0% | |
| TTCGGCCAACACCACAAGGT+GGG | - | chr4.4:8026429-8026448 | MS.gene49706:CDS | 55.0% | |
| TTCTACGGTGAGGATTGCCC+AGG | + | chr4.4:8029039-8029058 | None:intergenic | 55.0% | |
| ! | CAGCTGCTGGTTGTGGCTTT+CGG | - | chr4.4:8029399-8029418 | MS.gene49706:intron | 55.0% |
| ! | CCATTTTCCCACCCCATGCT+TGG | + | chr4.4:8025714-8025733 | None:intergenic | 55.0% |
| ! | CCGCTTTGTCGGGTTGTGTT+TGG | - | chr4.4:8029276-8029295 | MS.gene49706:intron | 55.0% |
| ! | CCGGTGTGGATCCCACATTT+TGG | + | chr4.4:8027500-8027519 | None:intergenic | 55.0% |
| ! | GACCTTTTTGGACCAGGACC+AGG | + | chr4.4:8026133-8026152 | None:intergenic | 55.0% |
| ! | TTAGGCACAGCTGCTGGTTG+TGG | - | chr4.4:8029392-8029411 | MS.gene49706:intron | 55.0% |
| !!! | TTTTGAAGTCTGCCGGTGGC+CGG | + | chr4.4:8028632-8028651 | None:intergenic | 55.0% |
| ACCCTCCCTAGATCCCACGT+GGG | - | chr4.4:8027709-8027728 | MS.gene49706:intron | 60.0% | |
| AGAGGCAGCAAAGGAGGCAG+AGG | - | chr4.4:8029875-8029894 | MS.gene49706:intron | 60.0% | |
| ATCCCACGTGGGATCTAGGG+AGG | + | chr4.4:8027714-8027733 | None:intergenic | 60.0% | |
| ATGCCGCACATTCCTGGTCC+TGG | - | chr4.4:8026118-8026137 | MS.gene49706:intron | 60.0% | |
| CCTCTCTGCTTGCGGGTGTA+AGG | - | chr4.4:8027674-8027693 | MS.gene49706:intron | 60.0% | |
| CCTTACACCCGCAAGCAGAG+AGG | + | chr4.4:8027677-8027696 | None:intergenic | 60.0% | |
| CGAGCCTGGGCACAACGTTA+AGG | - | chr4.4:8027605-8027624 | MS.gene49706:intron | 60.0% | |
| CGGGAAATGGATCGAGCTCC+AGG | - | chr4.4:8025954-8025973 | MS.gene49706:intron | 60.0% | |
| CTTCGGCCAACACCACAAGG+TGG | - | chr4.4:8026428-8026447 | MS.gene49706:CDS | 60.0% | |
| GAGGATCCCACGTGGGATCT+AGG | + | chr4.4:8027718-8027737 | None:intergenic | 60.0% | |
| GCCACCTTAACGTTGTGCCC+AGG | + | chr4.4:8027612-8027631 | None:intergenic | 60.0% | |
| GCCTGGGCACAACGTTAAGG+TGG | - | chr4.4:8027608-8027627 | MS.gene49706:intron | 60.0% | |
| GGACCAGGACCAGGAATGTG+CGG | + | chr4.4:8026124-8026143 | None:intergenic | 60.0% | |
| GGAGTTGCCAAGCATGGGGT+GGG | - | chr4.4:8025704-8025723 | MS.gene49706:intron | 60.0% | |
| GGCAGCCTCTTGAGCAGACA+TGG | + | chr4.4:8029802-8029821 | None:intergenic | 60.0% | |
| GTAGGACCAATACCGGCCAC+CGG | - | chr4.4:8028617-8028636 | MS.gene49706:intron | 60.0% | |
| TACCCTCCCTAGATCCCACG+TGG | - | chr4.4:8027708-8027727 | MS.gene49706:intron | 60.0% | |
| TCCCACGTGGGATCTAGGGA+GGG | + | chr4.4:8027713-8027732 | None:intergenic | 60.0% | |
| TCGCTTCGGCCAACACCACA+AGG | - | chr4.4:8026425-8026444 | MS.gene49706:CDS | 60.0% | |
| TGGAGTTGCCAAGCATGGGG+TGG | - | chr4.4:8025703-8025722 | MS.gene49706:intron | 60.0% | |
| TTGGGTGTGAGGCTGTGAGC+AGG | - | chr4.4:8029166-8029185 | MS.gene49706:intron | 60.0% | |
| !! | TGTGGTGTTGGCCGAAGCGA+TGG | + | chr4.4:8026425-8026444 | None:intergenic | 60.0% |
| AGCGCACGAGGATCCCACGT+GGG | + | chr4.4:8027725-8027744 | None:intergenic | 65.0% | |
| AGTCTGCCGGTGGCCGGTAT+TGG | + | chr4.4:8028626-8028645 | None:intergenic | 65.0% | |
| CACGTGGGATCCTCGTGCGC+TGG | - | chr4.4:8027724-8027743 | MS.gene49706:intron | 70.0% | |
| CAGCGCACGAGGATCCCACG+TGG | + | chr4.4:8027726-8027745 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8025650 | 8030538 | 8025650 | ID=MS.gene49706 |
| chr4.4 | mRNA | 8025650 | 8030538 | 8025650 | ID=MS.gene49706.t1;Parent=MS.gene49706 |
| chr4.4 | exon | 8030389 | 8030538 | 8030389 | ID=MS.gene49706.t1.exon1;Parent=MS.gene49706.t1 |
| chr4.4 | CDS | 8030389 | 8030538 | 8030389 | ID=cds.MS.gene49706.t1;Parent=MS.gene49706.t1 |
| chr4.4 | exon | 8030039 | 8030259 | 8030039 | ID=MS.gene49706.t1.exon2;Parent=MS.gene49706.t1 |
| chr4.4 | CDS | 8030039 | 8030259 | 8030039 | ID=cds.MS.gene49706.t1;Parent=MS.gene49706.t1 |
| chr4.4 | exon | 8029028 | 8029112 | 8029028 | ID=MS.gene49706.t1.exon3;Parent=MS.gene49706.t1 |
| chr4.4 | CDS | 8029028 | 8029112 | 8029028 | ID=cds.MS.gene49706.t1;Parent=MS.gene49706.t1 |
| chr4.4 | exon | 8027484 | 8027567 | 8027484 | ID=MS.gene49706.t1.exon4;Parent=MS.gene49706.t1 |
| chr4.4 | CDS | 8027484 | 8027567 | 8027484 | ID=cds.MS.gene49706.t1;Parent=MS.gene49706.t1 |
| chr4.4 | exon | 8026208 | 8026558 | 8026208 | ID=MS.gene49706.t1.exon5;Parent=MS.gene49706.t1 |
| chr4.4 | CDS | 8026208 | 8026558 | 8026208 | ID=cds.MS.gene49706.t1;Parent=MS.gene49706.t1 |
| chr4.4 | exon | 8025650 | 8025664 | 8025650 | ID=MS.gene49706.t1.exon6;Parent=MS.gene49706.t1 |
| chr4.4 | CDS | 8025650 | 8025664 | 8025650 | ID=cds.MS.gene49706.t1;Parent=MS.gene49706.t1 |
| Gene Sequence |
| Protein sequence |
