AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49825

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49825.t1 MTR_6g027710 98.678 227 3 0 1 227 1 227 5.50e-168 462
MS.gene49825.t1 MTR_6g027700 57.692 208 69 3 37 227 4 209 2.09e-77 232
MS.gene49825.t1 MTR_1g070205 46.277 188 88 4 40 220 12 193 9.09e-49 160
MS.gene49825.t1 MTR_7g096530 67.961 103 33 0 39 141 13 115 4.95e-47 155
MS.gene49825.t1 MTR_7g096610 64.815 108 38 0 39 146 7 114 5.69e-47 155
MS.gene49825.t1 MTR_8g036085 66.667 102 34 0 40 141 23 124 4.16e-46 153
MS.gene49825.t1 MTR_5g080470 54.701 117 53 0 41 157 8 124 4.86e-45 149
MS.gene49825.t1 MTR_1g070220 64.356 101 36 0 40 140 15 115 1.37e-44 148
MS.gene49825.t1 MTR_8g036105 60.504 119 46 1 40 157 18 136 3.61e-44 147
MS.gene49825.t1 MTR_7g074990 62.745 102 38 0 40 141 20 121 3.91e-44 148
MS.gene49825.t1 MTR_7g075230 62.385 109 37 3 40 144 12 120 4.68e-40 136
MS.gene49825.t1 MTR_4g105170 52.294 109 51 1 39 147 10 117 5.16e-35 123
MS.gene49825.t1 MTR_4g083680 49.074 108 54 1 39 146 14 120 9.01e-35 122
MS.gene49825.t1 MTR_3g071590 43.382 136 72 2 39 170 7 141 1.09e-34 121
MS.gene49825.t1 MTR_3g094690 51.376 109 52 1 38 146 45 152 2.83e-34 122
MS.gene49825.t1 MTR_3g031660 50.000 104 51 1 39 142 6 108 6.72e-34 120
MS.gene49825.t1 MTR_6g005070 48.276 116 57 2 39 154 8 120 7.07e-34 119
MS.gene49825.t1 MTR_3g077240 51.818 110 50 2 39 148 9 115 9.50e-34 120
MS.gene49825.t1 MTR_7g033800 51.923 104 49 1 39 142 10 112 1.10e-33 119
MS.gene49825.t1 MTR_2g068760 46.789 109 57 1 38 146 11 118 1.63e-33 118
MS.gene49825.t1 MTR_5g083960 49.107 112 56 1 39 150 38 148 1.68e-33 119
MS.gene49825.t1 MTR_5g083010 50.495 101 49 1 41 141 12 111 2.12e-33 119
MS.gene49825.t1 MTR_2g093310 40.397 151 79 3 37 181 30 175 2.47e-33 119
MS.gene49825.t1 MTR_3g094690 51.376 109 51 2 38 146 45 151 1.51e-32 118
MS.gene49825.t1 MTR_5g083230 49.038 104 52 1 39 142 5 107 2.15e-32 115
MS.gene49825.t1 MTR_5g017950 52.427 103 48 1 39 141 7 108 4.36e-32 119
MS.gene49825.t1 MTR_6g005080 45.690 116 60 2 39 154 9 121 1.04e-31 113
MS.gene49825.t1 MTR_3g073690 50.485 103 50 1 39 141 8 109 1.10e-31 115
MS.gene49825.t1 MTR_4g060950 42.963 135 68 4 37 164 21 153 2.70e-31 114
MS.gene49825.t1 MTR_3g071420 47.917 96 49 1 41 136 15 109 1.18e-30 112
MS.gene49825.t1 MTR_3g452660 45.299 117 60 2 39 155 6 118 1.04e-29 112
MS.gene49825.t1 MTR_5g075020 52.778 108 50 1 38 145 41 147 1.37e-29 110
MS.gene49825.t1 MTR_5g075020 52.778 108 50 1 38 145 45 151 2.27e-29 110
MS.gene49825.t1 MTR_1g095850 44.348 115 61 2 41 154 73 185 1.78e-28 107
MS.gene49825.t1 MTR_5g093010 45.283 106 57 1 41 146 6 110 3.34e-28 104
MS.gene49825.t1 MTR_8g040900 56.098 82 35 1 39 120 6 86 7.24e-27 103
MS.gene49825.t1 MTR_8g079660 44.762 105 57 1 37 141 5 108 3.56e-26 102
MS.gene49825.t1 MTR_7g028905 40.000 110 65 1 37 146 2 110 4.79e-26 98.2
MS.gene49825.t1 MTR_8g079620 39.815 108 64 1 34 141 2 108 3.08e-23 94.0
MS.gene49825.t1 MTR_8g079580 40.367 109 63 2 35 142 3 110 1.43e-20 86.7
MS.gene49825.t1 MTR_4g107450 41.584 101 58 1 41 141 11 110 4.37e-20 86.7
MS.gene49825.t1 MTR_2g100020 36.634 101 63 1 41 141 20 119 1.59e-19 85.1
MS.gene49825.t1 MTR_8g017090 37.624 101 62 1 41 141 13 112 2.48e-18 82.0
MS.gene49825.t1 MTR_6g011230 34.653 101 65 1 41 141 12 111 5.32e-17 76.6
MS.gene49825.t1 MTR_6g011250 38.235 102 61 2 41 141 10 110 7.10e-17 75.9
MS.gene49825.t1 MTR_6g011200 33.028 109 68 3 37 141 3 110 9.01e-16 74.3
MS.gene49825.t1 MTR_4g099230 41.975 81 45 2 41 120 3 82 1.22e-14 69.3
MS.gene49825.t1 MTR_5g085390 30.488 164 98 6 37 190 3 160 1.95e-13 67.4
MS.gene49825.t1 MTR_4g088035 27.072 181 99 5 39 191 5 180 1.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49825.t1 AT3G03760 67.785 149 43 1 39 187 50 193 3.17e-62 196
MS.gene49825.t1 AT2G42430 48.889 180 84 2 39 218 14 185 3.37e-49 161
MS.gene49825.t1 AT3G58190 61.864 118 44 1 40 157 11 127 3.65e-48 158
MS.gene49825.t1 AT2G42440 48.571 140 60 1 39 178 6 133 5.96e-44 148
MS.gene49825.t1 AT2G45420 65.385 104 36 0 43 146 40 143 1.16e-43 147
MS.gene49825.t1 AT5G06080 53.226 124 56 1 39 162 6 127 1.23e-43 145
MS.gene49825.t1 AT4G00220 62.500 104 39 0 43 146 20 123 3.32e-43 145
MS.gene49825.t1 AT4G00210 63.725 102 37 0 40 141 11 112 1.06e-42 144
MS.gene49825.t1 AT2G31310 56.604 106 46 0 39 144 6 111 1.11e-42 143
MS.gene49825.t1 AT2G45410 50.000 148 58 4 43 189 19 151 3.59e-40 136
MS.gene49825.t1 AT3G27650 52.885 104 48 1 39 142 38 140 1.05e-34 121
MS.gene49825.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene49825.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene49825.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene49825.t1 AT5G63090 42.675 157 80 4 39 190 10 161 4.68e-34 120
MS.gene49825.t1 AT2G30340 47.863 117 58 2 38 154 50 163 1.99e-33 121
MS.gene49825.t1 AT2G30340 47.863 117 58 2 38 154 51 164 1.99e-33 121
MS.gene49825.t1 AT2G30130 46.774 124 63 2 36 159 4 124 3.02e-33 119
MS.gene49825.t1 AT1G07900 45.378 119 62 2 37 154 30 146 3.35e-33 119
MS.gene49825.t1 AT3G11090 48.039 102 52 1 41 142 12 112 2.69e-32 115
MS.gene49825.t1 AT2G28500 47.748 111 55 2 37 146 52 160 5.69e-32 117
MS.gene49825.t1 AT1G16530 46.789 109 56 2 38 145 12 119 8.60e-32 114
MS.gene49825.t1 AT5G66870 41.290 155 79 3 39 193 6 148 1.68e-31 117
MS.gene49825.t1 AT1G31320 48.148 108 55 1 39 146 12 118 1.91e-30 111
MS.gene49825.t1 AT2G23660 46.154 104 55 1 39 142 4 106 4.50e-29 111
MS.gene49825.t1 AT2G23660 46.154 104 55 1 39 142 4 106 4.50e-29 111
MS.gene49825.t1 AT2G23660 46.154 104 55 1 39 142 4 106 4.50e-29 111
MS.gene49825.t1 AT2G40470 51.282 117 56 1 38 154 18 133 5.85e-29 108
MS.gene49825.t1 AT2G40470 51.282 117 56 1 38 154 43 158 5.93e-29 108
MS.gene49825.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene49825.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene49825.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene49825.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene49825.t1 AT1G65620 53.398 103 47 1 39 141 8 109 7.01e-29 107
MS.gene49825.t1 AT3G26660 44.444 108 52 2 41 141 6 112 2.10e-28 104
MS.gene49825.t1 AT3G26620 44.444 108 52 2 41 141 6 112 2.86e-28 103
MS.gene49825.t1 AT3G50510 38.532 109 66 1 33 141 5 112 5.63e-24 95.1
MS.gene49825.t1 AT3G50510 38.532 109 66 1 33 141 5 112 5.63e-24 95.1
MS.gene49825.t1 AT1G72980 41.818 110 62 2 39 147 12 120 6.59e-21 87.4
MS.gene49825.t1 AT3G13850 30.409 171 102 4 41 210 37 191 2.22e-19 84.3
MS.gene49825.t1 AT5G35900 33.981 103 67 1 39 141 4 105 9.85e-17 76.3
MS.gene49825.t1 AT3G47870 32.673 101 67 1 41 141 37 136 7.36e-15 72.8
MS.gene49825.t1 AT1G06280 41.333 75 43 1 41 115 25 98 2.99e-14 69.3
MS.gene49825.t1 AT4G22700 31.579 95 62 2 41 134 6 98 2.24e-12 63.9

Find 62 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGAAACGGCGGCTGATA+TGG 0.243600 6.3:+19479307 None:intergenic
AACAACTTCAACCCTGGTTT+TGG 0.268597 6.3:-19479199 MS.gene49825:CDS
AGGCTAGCTGATCCAGTTTA+TGG 0.286193 6.3:-19479729 MS.gene49825:CDS
CCTTCTTGCTTTGCAGCAAC+AGG 0.312094 6.3:-19479694 MS.gene49825:intron
AAATTGTTGCAGCAGCTTCC+TGG 0.332792 6.3:+19479769 None:intergenic
GACTGTGATGGCTGAGTCAC+AGG 0.379048 6.3:-19480057 None:intergenic
GGTGGTGATGGTAGTAGTTC+GGG 0.392136 6.3:-19480035 MS.gene49825:CDS
GTGGACACACAGCCATAAAC+TGG 0.395590 6.3:+19479717 None:intergenic
GAAGCACTTGTCCAACATTC+CGG 0.397219 6.3:-19479802 MS.gene49825:CDS
TGCATCTTTGCACCCTACTT+TGG 0.399115 6.3:-19479888 MS.gene49825:CDS
TGAAGTTGTTCATGTTCATA+AGG 0.399289 6.3:+19479212 None:intergenic
TAGCCTAGCTTGAGCCTCAT+AGG 0.409914 6.3:+19479746 None:intergenic
ATGGTAGTAGTTCGGGAAAC+AGG 0.414773 6.3:-19480028 MS.gene49825:CDS
TGCACAGGTACATTGAAGTT+TGG 0.417807 6.3:+19479274 None:intergenic
GTTGAAACGGCGGCTGATAT+GGG 0.423151 6.3:+19479308 None:intergenic
TGCAAACTCAATTGATGAAT+AGG 0.424003 6.3:-19479366 MS.gene49825:CDS
GCGGCTGTGCACAAGGTGTT+TGG 0.424834 6.3:-19479840 MS.gene49825:CDS
GGGTGGTGATGGTAGTAGTT+CGG 0.433902 6.3:-19480036 MS.gene49825:CDS
GCACCACACGGCGTTATAAC+CGG 0.444947 6.3:+19479945 None:intergenic
ATATCAGCCGCCGTTTCAAC+TGG 0.453062 6.3:-19479305 MS.gene49825:CDS
TTGGAATATGCTGGCTGCAC+AGG 0.466534 6.3:+19479259 None:intergenic
TTGCAGCAGCTTCCTGGCGA+TGG 0.481070 6.3:+19479775 None:intergenic
GGCTCTAAGCTCTGTGATGA+AGG 0.484149 6.3:+19479157 None:intergenic
TTTCTCAAAACGAGACATCC+TGG 0.484547 6.3:+19479123 None:intergenic
GTTGTTCATGTTCATAAGGT+TGG 0.485083 6.3:+19479216 None:intergenic
GCTTCCTGGCGATGGCTAGC+CGG 0.485119 6.3:+19479783 None:intergenic
TTGAGGAGGAAGTGTAGTAG+TGG 0.488789 6.3:-19479912 MS.gene49825:CDS
CCAAGGTGCGGCTAAGTTTG+CGG 0.493536 6.3:-19479859 MS.gene49825:CDS
AAGAGCAACACAAGACGAAC+CGG 0.499358 6.3:-19479964 MS.gene49825:CDS
GGTTGCTGTACCAGTTGAAA+CGG 0.507203 6.3:+19479295 None:intergenic
GGTGGAAGCAGATGAGTTGT+TGG 0.513070 6.3:+19479240 None:intergenic
TCCATTGTGAGGCCAAAACC+AGG 0.515508 6.3:+19479187 None:intergenic
CCTGTTGCTGCAAAGCAAGA+AGG 0.518305 6.3:+19479694 None:intergenic
GCGATGGCTAGCCGGAATGT+TGG 0.521327 6.3:+19479791 None:intergenic
AACATGAACAACTTCAACCC+TGG 0.523993 6.3:-19479205 MS.gene49825:CDS
TGCTGCAACAATTTCCTATG+AGG 0.529239 6.3:-19479760 MS.gene49825:CDS
GTTCATGTTCATAAGGTTGG+TGG 0.542354 6.3:+19479219 None:intergenic
CTGTTGCTGCAAAGCAAGAA+GGG 0.544374 6.3:+19479695 None:intergenic
ACCTTGGTCAGTACCAAAGT+AGG 0.553693 6.3:+19479875 None:intergenic
GCTGAGTCACAGGGTGGTGA+TGG 0.557362 6.3:-19480047 MS.gene49825:CDS
CATTCCGGCTAGCCATCGCC+AGG 0.568999 6.3:-19479787 MS.gene49825:CDS
AAACTCAATTGATGAATAGG+AGG 0.570071 6.3:-19479363 MS.gene49825:CDS
TAAGTTTGCGGCTGTGCACA+AGG 0.570935 6.3:-19479847 MS.gene49825:CDS
CCGCAAACTTAGCCGCACCT+TGG 0.577994 6.3:+19479859 None:intergenic
CATGTTCATAAGGTTGGTGG+TGG 0.580499 6.3:+19479222 None:intergenic
TTTCCTATGAGGCTCAAGCT+AGG 0.591556 6.3:-19479749 MS.gene49825:CDS
CCTTGGTCAGTACCAAAGTA+GGG 0.599955 6.3:+19479876 None:intergenic
GATGAGTTGTTGGAATATGC+TGG 0.605347 6.3:+19479250 None:intergenic
TTGAAACGGCGGCTGATATG+GGG 0.606891 6.3:+19479309 None:intergenic
CCCTACTTTGGTACTGACCA+AGG 0.613176 6.3:-19479876 MS.gene49825:CDS
GGTGGCAGCTATGCAAGCAG+AGG 0.634590 6.3:-19479398 MS.gene49825:CDS
GTGGTGCTTGCAAGTTCTTG+AGG 0.646814 6.3:-19479929 MS.gene49825:CDS
CTTTGGTACTGACCAAGGTG+CGG 0.655594 6.3:-19479871 MS.gene49825:CDS
TTGCTGCAAAGCAAGAAGGG+TGG 0.671870 6.3:+19479698 None:intergenic
AAGGTGCCGTCTCCATTGTG+AGG 0.672207 6.3:+19479176 None:intergenic
ACTGTGATGGCTGAGTCACA+GGG 0.673977 6.3:-19480056 None:intergenic
GTGCTTGCAAGTTCTTGAGG+AGG 0.680170 6.3:-19479926 MS.gene49825:CDS
TGCTGTACCAGTTGAAACGG+CGG 0.689555 6.3:+19479298 None:intergenic
AAGAACTTGCAAGCACCACA+CGG 0.689772 6.3:+19479933 None:intergenic
CCATTGTGAGGCCAAAACCA+GGG 0.697828 6.3:+19479188 None:intergenic
GAACCGGTTATAACGCCGTG+TGG 0.738703 6.3:-19479948 MS.gene49825:CDS
GTGATGGCTGAGTCACAGGG+TGG 0.776633 6.3:-19480053 MS.gene49825:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGATGAGAAAATTATT+AGG + chr6.3:19479613-19479632 None:intergenic 15.0%
!!! CATTCTTTCTTTTAAATTAA+AGG + chr6.3:19479543-19479562 None:intergenic 15.0%
!! AGAATATTTATCTATCTCTA+TGG - chr6.3:19479499-19479518 MS.gene49825:intron 20.0%
!! ATGATGAATAACTTACATTA+TGG - chr6.3:19479735-19479754 MS.gene49825:CDS 20.0%
AAACTCAATTGATGAATAGG+AGG - chr6.3:19479801-19479820 MS.gene49825:CDS 30.0%
ACTTGAGGTTACATTAATCT+TGG + chr6.3:19479706-19479725 None:intergenic 30.0%
TGAAGTTGTTCATGTTCATA+AGG + chr6.3:19479955-19479974 None:intergenic 30.0%
TGCAAACTCAATTGATGAAT+AGG - chr6.3:19479798-19479817 MS.gene49825:CDS 30.0%
GTTGTTCATGTTCATAAGGT+TGG + chr6.3:19479951-19479970 None:intergenic 35.0%
AACATGAACAACTTCAACCC+TGG - chr6.3:19479959-19479978 MS.gene49825:CDS 40.0%
CATCATTCATTCACGACTTG+AGG + chr6.3:19479721-19479740 None:intergenic 40.0%
GATGAGTTGTTGGAATATGC+TGG + chr6.3:19479917-19479936 None:intergenic 40.0%
GTTCATGTTCATAAGGTTGG+TGG + chr6.3:19479948-19479967 None:intergenic 40.0%
TGCACAGGTACATTGAAGTT+TGG + chr6.3:19479893-19479912 None:intergenic 40.0%
TGCTGCAACAATTTCCTATG+AGG - chr6.3:19479404-19479423 MS.gene49825:intron 40.0%
TTTCTCAAAACGAGACATCC+TGG + chr6.3:19480044-19480063 None:intergenic 40.0%
! AACAACTTCAACCCTGGTTT+TGG - chr6.3:19479965-19479984 MS.gene49825:CDS 40.0%
! TAGAGCCTTTTCAAAACTCC+AGG - chr6.3:19480023-19480042 MS.gene49825:CDS 40.0%
!!! GACATCCTGGAGTTTTGAAA+AGG + chr6.3:19480031-19480050 None:intergenic 40.0%
AAATTGTTGCAGCAGCTTCC+TGG + chr6.3:19479398-19479417 None:intergenic 45.0%
AAGAACTTGCAAGCACCACA+CGG + chr6.3:19479234-19479253 None:intergenic 45.0%
AAGAGCAACACAAGACGAAC+CGG - chr6.3:19479200-19479219 MS.gene49825:CDS 45.0%
ACCTTGGTCAGTACCAAAGT+AGG + chr6.3:19479292-19479311 None:intergenic 45.0%
ACTTACATTATGGCCGATGC+AGG - chr6.3:19479745-19479764 MS.gene49825:CDS 45.0%
ATGGTAGTAGTTCGGGAAAC+AGG - chr6.3:19479136-19479155 MS.gene49825:CDS 45.0%
CCTTGGTCAGTACCAAAGTA+GGG + chr6.3:19479291-19479310 None:intergenic 45.0%
CTGTTGCTGCAAAGCAAGAA+GGG + chr6.3:19479472-19479491 None:intergenic 45.0%
GGTTGCTGTACCAGTTGAAA+CGG + chr6.3:19479872-19479891 None:intergenic 45.0%
TGCATCTTTGCACCCTACTT+TGG - chr6.3:19479276-19479295 MS.gene49825:CDS 45.0%
TTTCCTATGAGGCTCAAGCT+AGG - chr6.3:19479415-19479434 MS.gene49825:intron 45.0%
! AGGCTAGCTGATCCAGTTTA+TGG - chr6.3:19479435-19479454 MS.gene49825:intron 45.0%
! GAAGCACTTGTCCAACATTC+CGG - chr6.3:19479362-19479381 MS.gene49825:CDS 45.0%
! TTGAGGAGGAAGTGTAGTAG+TGG - chr6.3:19479252-19479271 MS.gene49825:CDS 45.0%
! TTTTGGCCTCACAATGGAGA+CGG - chr6.3:19479982-19480001 MS.gene49825:CDS 45.0%
!! CATGTTCATAAGGTTGGTGG+TGG + chr6.3:19479945-19479964 None:intergenic 45.0%
AGTTGAAACGGCGGCTGATA+TGG + chr6.3:19479860-19479879 None:intergenic 50.0%
ATATCAGCCGCCGTTTCAAC+TGG - chr6.3:19479859-19479878 MS.gene49825:CDS 50.0%
CCATTGTGAGGCCAAAACCA+GGG + chr6.3:19479979-19479998 None:intergenic 50.0%
CCTGTTGCTGCAAAGCAAGA+AGG + chr6.3:19479473-19479492 None:intergenic 50.0%
CCTTCTTGCTTTGCAGCAAC+AGG - chr6.3:19479470-19479489 MS.gene49825:intron 50.0%
GGTGGAAGCAGATGAGTTGT+TGG + chr6.3:19479927-19479946 None:intergenic 50.0%
GTGCTTGCAAGTTCTTGAGG+AGG - chr6.3:19479238-19479257 MS.gene49825:CDS 50.0%
GTGGACACACAGCCATAAAC+TGG + chr6.3:19479450-19479469 None:intergenic 50.0%
GTGGTGCTTGCAAGTTCTTG+AGG - chr6.3:19479235-19479254 MS.gene49825:CDS 50.0%
GTTGAAACGGCGGCTGATAT+GGG + chr6.3:19479859-19479878 None:intergenic 50.0%
TAAGTTTGCGGCTGTGCACA+AGG - chr6.3:19479317-19479336 MS.gene49825:CDS 50.0%
TACATTATGGCCGATGCAGG+TGG - chr6.3:19479748-19479767 MS.gene49825:CDS 50.0%
TAGCCTAGCTTGAGCCTCAT+AGG + chr6.3:19479421-19479440 None:intergenic 50.0%
TCCATTGTGAGGCCAAAACC+AGG + chr6.3:19479980-19479999 None:intergenic 50.0%
TGCTGTACCAGTTGAAACGG+CGG + chr6.3:19479869-19479888 None:intergenic 50.0%
TTGAAACGGCGGCTGATATG+GGG + chr6.3:19479858-19479877 None:intergenic 50.0%
TTGCTGCAAAGCAAGAAGGG+TGG + chr6.3:19479469-19479488 None:intergenic 50.0%
! TTGGAATATGCTGGCTGCAC+AGG + chr6.3:19479908-19479927 None:intergenic 50.0%
!! CCCTACTTTGGTACTGACCA+AGG - chr6.3:19479288-19479307 MS.gene49825:CDS 50.0%
!! CTTTGGTACTGACCAAGGTG+CGG - chr6.3:19479293-19479312 MS.gene49825:CDS 50.0%
!! GGCTCTAAGCTCTGTGATGA+AGG + chr6.3:19480010-19480029 None:intergenic 50.0%
!! GGGTGGTGATGGTAGTAGTT+CGG - chr6.3:19479128-19479147 MS.gene49825:CDS 50.0%
!! GGTGGTGATGGTAGTAGTTC+GGG - chr6.3:19479129-19479148 MS.gene49825:CDS 50.0%
CCAAGGTGCGGCTAAGTTTG+CGG - chr6.3:19479305-19479324 MS.gene49825:CDS 55.0%
GAACCGGTTATAACGCCGTG+TGG - chr6.3:19479216-19479235 MS.gene49825:CDS 55.0%
GCACCACACGGCGTTATAAC+CGG + chr6.3:19479222-19479241 None:intergenic 55.0%
TGCATAGCTGCCACCTGCAT+CGG + chr6.3:19479761-19479780 None:intergenic 55.0%
!! AAGGTGCCGTCTCCATTGTG+AGG + chr6.3:19479991-19480010 None:intergenic 55.0%
!!! CCCTGGTTTTGGCCTCACAA+TGG - chr6.3:19479976-19479995 MS.gene49825:CDS 55.0%
CCGCAAACTTAGCCGCACCT+TGG + chr6.3:19479308-19479327 None:intergenic 60.0%
GCTGAGTCACAGGGTGGTGA+TGG - chr6.3:19479117-19479136 MS.gene49825:CDS 60.0%
GGTGGCAGCTATGCAAGCAG+AGG - chr6.3:19479766-19479785 MS.gene49825:CDS 60.0%
TTGCAGCAGCTTCCTGGCGA+TGG + chr6.3:19479392-19479411 None:intergenic 60.0%
! GCGATGGCTAGCCGGAATGT+TGG + chr6.3:19479376-19479395 None:intergenic 60.0%
! GCGGCTGTGCACAAGGTGTT+TGG - chr6.3:19479324-19479343 MS.gene49825:CDS 60.0%
GCTTCCTGGCGATGGCTAGC+CGG + chr6.3:19479384-19479403 None:intergenic 65.0%
! CATTCCGGCTAGCCATCGCC+AGG - chr6.3:19479377-19479396 MS.gene49825:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 19479114 19480072 19479114 ID=MS.gene49825
chr6.3 mRNA 19479114 19480072 19479114 ID=MS.gene49825.t1;Parent=MS.gene49825
chr6.3 exon 19479695 19480072 19479695 ID=MS.gene49825.t1.exon1;Parent=MS.gene49825.t1
chr6.3 CDS 19479695 19480072 19479695 ID=cds.MS.gene49825.t1;Parent=MS.gene49825.t1
chr6.3 exon 19479114 19479419 19479114 ID=MS.gene49825.t1.exon2;Parent=MS.gene49825.t1
chr6.3 CDS 19479114 19479419 19479114 ID=cds.MS.gene49825.t1;Parent=MS.gene49825.t1
Gene Sequence

>MS.gene49825

ATGGCTGAGTCACAGGGTGGTGATGGTAGTAGTTCGGGAAACAGGCGCAATAAAAGCGCAAATGCTGCTGCAAAGCGTGCAATAGCAAGAGCAACACAAGACGAACCGGTTATAACGCCGTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTAGTGGATGCATCTTTGCACCCTACTTTGGTACTGACCAAGGTGCGGCTAAGTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCGAAGCACTTGTCCAACATTCCGGCTAGCCATCGCCAGGAAGCTGCTGCAACAATTTCCTATGAGGCTCAAGCTAGGCTAGCTGATCCAGTTTATGGCTGTGTGTCCACCCTTCTTGCTTTGCAGCAACAGGTTGAGTAGAATATTTATCTATCTCTATGGTTTTGCAGCTTCTATTCACCTTTAATTTAAAAGAAAGAATGATATTACATGTACATTCATAGTAAGTCATAAATGTTATGAAATATCACCTAATAATTTTCTCATCAATAATTGAAATGTTGTATTTTACTCTTTAAAGAAAATGTTTTCTTTAGAAGAAACAAATCAAAAAGATTGCATGCCAAGATTAATGTAACCTCAAGTCGTGAATGAATGATGAATAACTTACATTATGGCCGATGCAGGTGGCAGCTATGCAAGCAGAGGTCTCGATGATGCAAACTCAATTGATGAATAGGAGGCTTGCATATGCAAATGCAAGTACTCTTCAAGCCCCATATCAGCCGCCGTTTCAACTGGTACAGCAACCAAACTTCAATGTACCTGTGCAGCCAGCATATTCCAACAACTCATCTGCTTCCACCACCAACCTTATGAACATGAACAACTTCAACCCTGGTTTTGGCCTCACAATGGAGACGGCACCTTCATCACAGAGCTTAGAGCCTTTTCAAAACTCCAGGATGTCTCGTTTTGAGAAAGATGATTAA
Protein sequence

>MS.gene49825.t1

MAESQGGDGSSSGNRRNKSANAAAKRAIARATQDEPVITPCGACKFLRRKCSSGCIFAPYFGTDQGAAKFAAVHKVFGASNVSKHLSNIPASHRQEAAATISYEAQARLADPVYGCVSTLLALQQQVAAMQAEVSMMQTQLMNRRLAYANASTLQAPYQPPFQLVQQPNFNVPVQPAYSNNSSASTTNLMNMNNFNPGFGLTMETAPSSQSLEPFQNSRMSRFEKDD