AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49826

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49826.t1 MTR_6g027700 89.048 210 21 2 1 209 1 209 4.29e-126 354
MS.gene49826.t1 MTR_6g027710 61.165 206 61 3 6 209 39 227 6.95e-80 238
MS.gene49826.t1 MTR_7g096610 54.206 107 49 0 1 107 2 108 7.15e-39 133
MS.gene49826.t1 MTR_1g070205 55.238 105 47 0 7 111 12 116 1.39e-38 133
MS.gene49826.t1 MTR_8g036085 58.416 101 42 0 7 107 23 123 1.50e-37 130
MS.gene49826.t1 MTR_7g096530 57.547 106 45 0 6 111 13 118 2.35e-37 129
MS.gene49826.t1 MTR_7g074990 53.774 106 49 0 7 112 20 125 4.94e-37 129
MS.gene49826.t1 MTR_1g070220 57.282 103 44 0 7 109 15 117 1.55e-36 127
MS.gene49826.t1 MTR_8g036105 56.000 100 44 0 7 106 18 117 6.25e-36 125
MS.gene49826.t1 MTR_5g080470 46.154 117 63 0 1 117 1 117 3.44e-34 120
MS.gene49826.t1 MTR_7g075230 52.336 107 49 2 3 107 8 114 1.79e-33 119
MS.gene49826.t1 MTR_3g077240 48.182 110 54 2 6 115 9 115 1.07e-31 114
MS.gene49826.t1 MTR_4g105170 50.000 96 47 1 6 101 10 104 4.52e-31 112
MS.gene49826.t1 MTR_5g017950 42.466 146 77 4 6 148 7 148 1.16e-29 112
MS.gene49826.t1 MTR_3g031660 42.991 107 60 1 1 107 1 106 1.55e-29 108
MS.gene49826.t1 MTR_7g033800 48.039 102 52 1 6 107 10 110 1.81e-29 108
MS.gene49826.t1 MTR_4g083680 35.897 156 89 3 5 160 13 157 1.83e-29 108
MS.gene49826.t1 MTR_3g071590 45.631 103 55 1 5 107 6 107 2.97e-29 107
MS.gene49826.t1 MTR_2g093310 35.862 145 88 2 6 146 32 175 1.20e-28 106
MS.gene49826.t1 MTR_5g083230 38.168 131 69 2 6 136 5 123 1.20e-28 105
MS.gene49826.t1 MTR_3g094690 45.098 102 55 1 6 107 46 146 1.55e-28 107
MS.gene49826.t1 MTR_2g068760 44.248 113 55 2 6 111 12 123 2.29e-28 104
MS.gene49826.t1 MTR_3g073690 46.602 103 54 1 5 107 7 108 3.40e-28 105
MS.gene49826.t1 MTR_5g083960 39.496 119 71 1 5 123 37 154 3.78e-28 105
MS.gene49826.t1 MTR_5g083010 44.660 103 56 1 5 107 9 110 3.81e-28 104
MS.gene49826.t1 MTR_6g005070 46.154 104 55 1 6 109 8 110 4.78e-28 103
MS.gene49826.t1 MTR_3g452660 43.925 107 59 1 1 107 1 106 1.07e-27 106
MS.gene49826.t1 MTR_3g094690 45.098 102 54 2 6 107 46 145 9.91e-27 102
MS.gene49826.t1 MTR_3g071420 43.564 101 56 1 5 105 12 111 1.16e-26 101
MS.gene49826.t1 MTR_4g060950 41.509 106 60 2 6 110 23 127 3.73e-26 100
MS.gene49826.t1 MTR_6g005080 45.098 102 55 1 6 107 9 109 4.05e-26 98.6
MS.gene49826.t1 MTR_1g095850 34.286 140 83 2 8 139 73 211 1.26e-25 99.8
MS.gene49826.t1 MTR_5g093010 37.692 130 69 2 8 137 6 123 1.04e-24 95.1
MS.gene49826.t1 MTR_7g028905 38.000 100 61 1 8 107 6 104 1.28e-22 88.6
MS.gene49826.t1 MTR_5g075020 43.243 111 62 1 6 116 42 151 1.66e-22 91.3
MS.gene49826.t1 MTR_8g040900 46.591 88 46 1 1 88 1 87 1.88e-22 91.3
MS.gene49826.t1 MTR_5g075020 43.243 111 62 1 6 116 46 155 2.46e-22 91.3
MS.gene49826.t1 MTR_8g079620 41.414 99 57 1 7 105 8 105 3.67e-22 90.9
MS.gene49826.t1 MTR_8g079660 39.394 99 59 1 7 105 8 105 1.13e-21 90.1
MS.gene49826.t1 MTR_2g100020 34.000 100 65 1 8 107 20 118 2.23e-18 81.3
MS.gene49826.t1 MTR_8g017090 35.000 100 64 1 8 107 13 111 7.17e-18 80.5
MS.gene49826.t1 MTR_8g079580 39.000 100 59 2 7 105 8 106 5.12e-17 76.6
MS.gene49826.t1 MTR_4g107450 36.000 100 63 1 8 107 11 109 1.06e-16 77.0
MS.gene49826.t1 MTR_6g011230 31.731 104 70 1 2 105 6 108 1.91e-15 72.0
MS.gene49826.t1 MTR_6g011200 31.707 123 75 3 8 129 10 124 2.87e-15 72.4
MS.gene49826.t1 MTR_6g011250 27.128 188 103 5 8 190 10 168 5.00e-15 70.5
MS.gene49826.t1 MTR_4g088035 35.955 89 56 1 6 94 5 92 1.16e-14 70.9
MS.gene49826.t1 MTR_4g099230 37.500 96 54 3 8 98 3 97 7.14e-14 66.6
MS.gene49826.t1 MTR_5g085390 29.299 157 96 5 8 155 10 160 1.44e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49826.t1 AT3G03760 59.821 112 45 0 6 117 50 161 2.50e-45 152
MS.gene49826.t1 AT2G42430 47.917 144 74 1 2 144 10 153 1.46e-38 133
MS.gene49826.t1 AT3G58190 58.416 101 42 0 7 107 11 111 3.73e-38 131
MS.gene49826.t1 AT2G31310 48.598 107 55 0 1 107 1 107 2.98e-37 128
MS.gene49826.t1 AT2G42440 51.402 107 52 0 1 107 1 107 8.62e-37 129
MS.gene49826.t1 AT2G45420 62.245 98 37 0 10 107 40 137 2.09e-36 128
MS.gene49826.t1 AT4G00220 56.122 98 43 0 10 107 20 117 3.22e-34 122
MS.gene49826.t1 AT5G06080 48.718 117 58 1 1 117 1 115 3.88e-34 120
MS.gene49826.t1 AT4G00210 52.475 101 48 0 7 107 11 111 4.41e-33 119
MS.gene49826.t1 AT2G45410 43.165 139 71 1 10 148 19 149 7.28e-33 117
MS.gene49826.t1 AT5G63090 45.133 113 61 1 6 118 10 121 6.20e-31 112
MS.gene49826.t1 AT5G63090 45.133 113 61 1 6 118 10 121 6.20e-31 112
MS.gene49826.t1 AT5G63090 45.133 113 61 1 6 118 10 121 6.20e-31 112
MS.gene49826.t1 AT5G63090 45.133 113 61 1 6 118 10 121 6.20e-31 112
MS.gene49826.t1 AT1G07900 35.484 155 92 3 6 159 32 179 3.48e-30 110
MS.gene49826.t1 AT1G16530 46.226 106 55 2 6 110 13 117 5.77e-30 108
MS.gene49826.t1 AT3G27650 44.737 114 58 2 6 119 38 146 9.43e-29 105
MS.gene49826.t1 AT2G30130 45.045 111 56 2 5 111 6 115 1.81e-28 106
MS.gene49826.t1 AT3G11090 40.952 105 61 1 5 109 9 112 3.46e-28 104
MS.gene49826.t1 AT2G30340 41.667 120 67 2 6 125 51 167 2.25e-27 105
MS.gene49826.t1 AT2G23660 46.602 103 54 1 5 107 3 104 2.25e-27 106
MS.gene49826.t1 AT2G23660 46.602 103 54 1 5 107 3 104 2.25e-27 106
MS.gene49826.t1 AT2G23660 46.602 103 54 1 5 107 3 104 2.25e-27 106
MS.gene49826.t1 AT2G30340 41.667 120 67 2 6 125 52 168 2.86e-27 104
MS.gene49826.t1 AT5G66870 43.925 107 59 1 1 107 1 106 4.05e-27 105
MS.gene49826.t1 AT3G50510 41.905 105 60 1 1 105 6 109 1.45e-26 101
MS.gene49826.t1 AT3G50510 41.905 105 60 1 1 105 6 109 1.45e-26 101
MS.gene49826.t1 AT1G31320 41.228 114 59 2 5 111 11 123 6.43e-26 99.0
MS.gene49826.t1 AT2G28500 42.268 97 55 1 6 102 54 149 1.05e-25 100
MS.gene49826.t1 AT3G26660 38.000 100 61 1 8 107 6 104 4.84e-24 92.4
MS.gene49826.t1 AT3G26620 38.000 100 61 1 8 107 6 104 6.60e-24 92.0
MS.gene49826.t1 AT1G65620 46.789 109 55 2 1 107 1 108 2.34e-23 92.8
MS.gene49826.t1 AT1G65620 46.789 109 55 2 1 107 1 108 2.34e-23 92.8
MS.gene49826.t1 AT1G65620 46.789 109 55 2 1 107 1 108 2.34e-23 92.8
MS.gene49826.t1 AT1G65620 46.789 109 55 2 1 107 1 108 2.34e-23 92.8
MS.gene49826.t1 AT1G65620 46.789 109 55 2 1 107 1 108 2.34e-23 92.8
MS.gene49826.t1 AT2G40470 46.154 104 55 1 6 109 19 121 2.03e-22 90.5
MS.gene49826.t1 AT2G40470 47.059 102 53 1 6 107 44 144 3.41e-22 90.5
MS.gene49826.t1 AT1G72980 38.835 103 62 1 5 107 11 112 2.65e-20 85.5
MS.gene49826.t1 AT5G35900 40.594 101 59 1 5 105 3 102 3.93e-19 82.0
MS.gene49826.t1 AT3G13850 31.818 132 88 2 8 138 37 167 8.79e-19 82.4
MS.gene49826.t1 AT3G47870 31.068 103 70 1 5 107 34 135 9.84e-16 74.7
MS.gene49826.t1 AT1G06280 44.000 75 41 1 8 82 25 98 2.26e-15 72.0

Find 44 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGACACACAACCATTAAT+TGG 0.284098 6.3:+19475582 None:intergenic
TTGAAGAAGAAGTGTATTAA+TGG 0.285388 6.3:-19475777 MS.gene49826:CDS
GCAGCTGTGCACAAGGTCTT+TGG 0.289287 6.3:-19475705 MS.gene49826:CDS
TTGTTGGTGGCAGCAAGAAC+AGG 0.345361 6.3:+19474972 None:intergenic
GCGGTGAATAGTTGGAATTT+TGG 0.347398 6.3:+19475656 None:intergenic
CATTAGTGCTTTGGAGAAAC+AGG 0.350270 6.3:-19475559 MS.gene49826:intron
CTGTTTCTCCAAAGCACTAA+TGG 0.365272 6.3:+19475560 None:intergenic
AGGATCGCTGATCCAATTAA+TGG 0.374552 6.3:-19475594 MS.gene49826:CDS
CTCCAGGTTCTCTTATCATC+AGG 0.387227 6.3:-19474859 MS.gene49826:CDS
TGTGTCCACCATTAGTGCTT+TGG 0.395836 6.3:-19475568 MS.gene49826:CDS
TGAAGTTGTTCATGTTCATA+AGG 0.399289 6.3:+19474949 None:intergenic
TGCATCTTTGCACCCTACTT+TGG 0.409327 6.3:-19475753 MS.gene49826:CDS
TGCACAGATACATTGAAGTT+TGG 0.428474 6.3:+19475059 None:intergenic
GATCCTGGCCTGAGCCTCAT+AGG 0.432336 6.3:+19475611 None:intergenic
GTAGCATTTGCTGATGCTGC+AGG 0.445401 6.3:+19475087 None:intergenic
GTTCATGTTCATAAGGTTGT+TGG 0.448098 6.3:+19474956 None:intergenic
GACTATAACCTATGAGGCTC+AGG 0.457119 6.3:-19475619 MS.gene49826:CDS
ATTAATTGGATCAGCGATCC+TGG 0.479430 6.3:+19475596 None:intergenic
GATGGAAGGAGATGGATTGT+TGG 0.492226 6.3:+19475025 None:intergenic
GATGGATTGTTGGAGTATGC+TGG 0.496824 6.3:+19475035 None:intergenic
TTGCTGATGCTGCAGGTCTG+TGG 0.518208 6.3:+19475094 None:intergenic
AACATGAACAACTTCAACCC+TGG 0.523993 6.3:-19474942 MS.gene49826:CDS
CATGTTCATGAGATCTTCGA+TGG 0.526356 6.3:+19475007 None:intergenic
CATGTTCATAAGGTTGTTGG+TGG 0.547943 6.3:+19474959 None:intergenic
AATGAAGACTATAACCTATG+AGG 0.550364 6.3:-19475625 MS.gene49826:CDS
CAGATAAATCGACACCGTGT+GGG 0.552619 6.3:-19475812 MS.gene49826:CDS
TCCATTGTAGTATCAAAACC+AGG 0.562905 6.3:+19474924 None:intergenic
TAACCTATGAGGCTCAGGCC+AGG 0.563627 6.3:-19475614 MS.gene49826:CDS
TTCATGAGATCTTCGATGGA+AGG 0.566318 6.3:+19475011 None:intergenic
TAGCTTTGCAGCTGTGCACA+AGG 0.566837 6.3:-19475712 MS.gene49826:CDS
AGATCTTCGATGGAAGGAGA+TGG 0.567577 6.3:+19475017 None:intergenic
CTCAAAGCTCTGTGATGATG+AGG 0.569176 6.3:+19474893 None:intergenic
TCCCTGATGATAAGAGAACC+TGG 0.572844 6.3:+19474857 None:intergenic
TCCAGGTTCTCTTATCATCA+GGG 0.596198 6.3:-19474858 MS.gene49826:CDS
GCAGATAAATCGACACCGTG+TGG 0.608982 6.3:-19475813 MS.gene49826:CDS
GGTGGAGGCACTGCAAGCAG+AGG 0.616998 6.3:-19475177 MS.gene49826:CDS
GGACAAGATCTTCAACACAT+TGG 0.623216 6.3:+19475677 None:intergenic
TGTTGGTGGCAGCAAGAACA+GGG 0.624562 6.3:+19474973 None:intergenic
TTTCTCCAAAGCACTAATGG+TGG 0.632553 6.3:+19475563 None:intergenic
AGATAAATCGACACCGTGTG+GGG 0.638818 6.3:-19475811 MS.gene49826:CDS
AAGTGCTTGCAAGCCCCACA+CGG 0.644781 6.3:+19475798 None:intergenic
TCAAAGCTCTGTGATGATGA+GGG 0.650661 6.3:+19474894 None:intergenic
AAAGCTCAGCAGATGAACAA+CGG 0.670494 6.3:-19475143 MS.gene49826:CDS
CCATTGTAGTATCAAAACCA+GGG 0.697403 6.3:+19474925 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTGAAAAGAAATTAAA+TGG + chr6.3:19475367-19475386 None:intergenic 15.0%
!! ATAATGAATAACTTACCTTA+TGG - chr6.3:19475456-19475475 MS.gene49826:intron 20.0%
!! CAACAAAAATCAGAATATAT+GGG - chr6.3:19475380-19475399 MS.gene49826:intron 20.0%
!! TCAACAAAAATCAGAATATA+TGG - chr6.3:19475379-19475398 MS.gene49826:intron 20.0%
!!! ATTTTGTTTTTTACCAAAGT+AGG + chr6.3:19474927-19474946 None:intergenic 20.0%
!!! TTTTGTTTTTTACCAAAGTA+GGG + chr6.3:19474926-19474945 None:intergenic 20.0%
! AAATGAAGTCTTTCTGTAAA+CGG + chr6.3:19475182-19475201 None:intergenic 25.0%
! AATGGAGGATTATTTAATCT+AGG + chr6.3:19475349-19475368 None:intergenic 25.0%
! ATATATGGGACAAAAGTAAA+AGG - chr6.3:19475394-19475413 MS.gene49826:intron 25.0%
! GTTGAAAAGAAATTAAATGG+AGG + chr6.3:19475364-19475383 None:intergenic 25.0%
! TCAAGGTCTCAAATAAATTA+TGG + chr6.3:19475227-19475246 None:intergenic 25.0%
! TTCTGTAAACGGTTTATTAA+AGG + chr6.3:19475171-19475190 None:intergenic 25.0%
!! TTACAGAAAGACTTCATTTT+CGG - chr6.3:19475183-19475202 MS.gene49826:intron 25.0%
!! TTGAAGAAGAAGTGTATTAA+TGG - chr6.3:19474887-19474906 MS.gene49826:CDS 25.0%
AATGAAGACTATAACCTATG+AGG - chr6.3:19475039-19475058 MS.gene49826:CDS 30.0%
TGAAGTTGTTCATGTTCATA+AGG + chr6.3:19475718-19475737 None:intergenic 30.0%
! AATTTATTTGAGACCTTGAG+AGG - chr6.3:19475228-19475247 MS.gene49826:intron 30.0%
!!! TAGTCTTCATTGCTTTTTTG+CGG + chr6.3:19475030-19475049 None:intergenic 30.0%
AACATTTGCTTAACCCACTT+GGG + chr6.3:19475293-19475312 None:intergenic 35.0%
CCATTGTAGTATCAAAACCA+GGG + chr6.3:19475742-19475761 None:intergenic 35.0%
GTTCATGTTCATAAGGTTGT+TGG + chr6.3:19475711-19475730 None:intergenic 35.0%
TCCATTGTAGTATCAAAACC+AGG + chr6.3:19475743-19475762 None:intergenic 35.0%
TGCACAGATACATTGAAGTT+TGG + chr6.3:19475608-19475627 None:intergenic 35.0%
! GAAAGACTTCATTTTCGGTA+AGG - chr6.3:19475188-19475207 MS.gene49826:intron 35.0%
AAAGCTCAGCAGATGAACAA+CGG - chr6.3:19475521-19475540 MS.gene49826:intron 40.0%
AACATGAACAACTTCAACCC+TGG - chr6.3:19475674-19475693 MS.gene49826:CDS 40.0%
AGGATCGCTGATCCAATTAA+TGG - chr6.3:19475070-19475089 MS.gene49826:CDS 40.0%
ATTAATTGGATCAGCGATCC+TGG + chr6.3:19475071-19475090 None:intergenic 40.0%
CATGTTCATAAGGTTGTTGG+TGG + chr6.3:19475708-19475727 None:intergenic 40.0%
CATGTTCATGAGATCTTCGA+TGG + chr6.3:19475660-19475679 None:intergenic 40.0%
GAACATTTGCTTAACCCACT+TGG + chr6.3:19475294-19475313 None:intergenic 40.0%
GGACAAGATCTTCAACACAT+TGG + chr6.3:19474990-19475009 None:intergenic 40.0%
GTGGACACACAACCATTAAT+TGG + chr6.3:19475085-19475104 None:intergenic 40.0%
TCCAGGTTCTCTTATCATCA+GGG - chr6.3:19475806-19475825 MS.gene49826:CDS 40.0%
TTCATGAGATCTTCGATGGA+AGG + chr6.3:19475656-19475675 None:intergenic 40.0%
! CTGTTTCTCCAAAGCACTAA+TGG + chr6.3:19475107-19475126 None:intergenic 40.0%
! GCGGTGAATAGTTGGAATTT+TGG + chr6.3:19475011-19475030 None:intergenic 40.0%
! TCAAAGCTCTGTGATGATGA+GGG + chr6.3:19475773-19475792 None:intergenic 40.0%
! TTGAGCCTTTTCAAAACTCC+AGG - chr6.3:19475789-19475808 MS.gene49826:CDS 40.0%
! TTTCTCCAAAGCACTAATGG+TGG + chr6.3:19475104-19475123 None:intergenic 40.0%
!! CATTAGTGCTTTGGAGAAAC+AGG - chr6.3:19475105-19475124 MS.gene49826:CDS 40.0%
!!! CCCTGGTTTTGATACTACAA+TGG - chr6.3:19475739-19475758 MS.gene49826:CDS 40.0%
!!! GAGAACCTGGAGTTTTGAAA+AGG + chr6.3:19475797-19475816 None:intergenic 40.0%
!!! GCTTTTTTGCGGTGAATAGT+TGG + chr6.3:19475019-19475038 None:intergenic 40.0%
ACTTACCTTATGGCCAATCC+AGG - chr6.3:19475466-19475485 MS.gene49826:intron 45.0%
AGATAAATCGACACCGTGTG+GGG - chr6.3:19474853-19474872 MS.gene49826:CDS 45.0%
AGATCTTCGATGGAAGGAGA+TGG + chr6.3:19475650-19475669 None:intergenic 45.0%
CAGATAAATCGACACCGTGT+GGG - chr6.3:19474852-19474871 MS.gene49826:CDS 45.0%
CTCCAGGTTCTCTTATCATC+AGG - chr6.3:19475805-19475824 MS.gene49826:CDS 45.0%
GACTATAACCTATGAGGCTC+AGG - chr6.3:19475045-19475064 MS.gene49826:CDS 45.0%
TCCCTGATGATAAGAGAACC+TGG + chr6.3:19475810-19475829 None:intergenic 45.0%
TGCATCTTTGCACCCTACTT+TGG - chr6.3:19474911-19474930 MS.gene49826:CDS 45.0%
TGTGTCCACCATTAGTGCTT+TGG - chr6.3:19475096-19475115 MS.gene49826:CDS 45.0%
TTTGCTTAACCCACTTGGGT+TGG + chr6.3:19475289-19475308 None:intergenic 45.0%
! CTCAAAGCTCTGTGATGATG+AGG + chr6.3:19475774-19475793 None:intergenic 45.0%
!! CTTAGAGAGTACTCCTCTCA+AGG + chr6.3:19475244-19475263 None:intergenic 45.0%
!! CTTGAGAGGAGTACTCTCTA+AGG - chr6.3:19475242-19475261 MS.gene49826:intron 45.0%
!! GATGGAAGGAGATGGATTGT+TGG + chr6.3:19475642-19475661 None:intergenic 45.0%
!! GATGGATTGTTGGAGTATGC+TGG + chr6.3:19475632-19475651 None:intergenic 45.0%
GCAGATAAATCGACACCGTG+TGG - chr6.3:19474851-19474870 MS.gene49826:CDS 50.0%
TACCTTATGGCCAATCCAGG+TGG - chr6.3:19475469-19475488 MS.gene49826:intron 50.0%
! GTAGCATTTGCTGATGCTGC+AGG + chr6.3:19475580-19475599 None:intergenic 50.0%
! TAGCTTTGCAGCTGTGCACA+AGG - chr6.3:19474952-19474971 MS.gene49826:CDS 50.0%
!! TGTTGGTGGCAGCAAGAACA+GGG + chr6.3:19475694-19475713 None:intergenic 50.0%
!! TTGTTGGTGGCAGCAAGAAC+AGG + chr6.3:19475695-19475714 None:intergenic 50.0%
AAGTGCTTGCAAGCCCCACA+CGG + chr6.3:19474869-19474888 None:intergenic 55.0%
CTTATGGCCAATCCAGGTGG+AGG - chr6.3:19475472-19475491 MS.gene49826:intron 55.0%
GCAGCTGTGCACAAGGTCTT+TGG - chr6.3:19474959-19474978 MS.gene49826:CDS 55.0%
TAACCTATGAGGCTCAGGCC+AGG - chr6.3:19475050-19475069 MS.gene49826:CDS 55.0%
TTGCTGATGCTGCAGGTCTG+TGG + chr6.3:19475573-19475592 None:intergenic 55.0%
!! CTCCACCTGGATTGGCCATA+AGG + chr6.3:19475474-19475493 None:intergenic 55.0%
!! TGGCCTGGTGGTGTTGGTTT+GGG + chr6.3:19475269-19475288 None:intergenic 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG + chr6.3:19475284-19475303 None:intergenic 55.0%
!! TTGGCCTGGTGGTGTTGGTT+TGG + chr6.3:19475270-19475289 None:intergenic 55.0%
ACCACCAGGCCAACCCAAGT+GGG - chr6.3:19475277-19475296 MS.gene49826:intron 60.0%
GATCCTGGCCTGAGCCTCAT+AGG + chr6.3:19475056-19475075 None:intergenic 60.0%
GGTCCCAAACCAACACCACC+AGG - chr6.3:19475263-19475282 MS.gene49826:intron 60.0%
TGCAGTGCCTCCACCTGGAT+TGG + chr6.3:19475482-19475501 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + chr6.3:19475275-19475294 None:intergenic 60.0%
CACCACCAGGCCAACCCAAG+TGG - chr6.3:19475276-19475295 MS.gene49826:intron 65.0%
CTGCTTGCAGTGCCTCCACC+TGG + chr6.3:19475487-19475506 None:intergenic 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG + chr6.3:19475281-19475300 None:intergenic 65.0%
!! GGTGGAGGCACTGCAAGCAG+AGG - chr6.3:19475487-19475506 MS.gene49826:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 19474848 19475838 19474848 ID=MS.gene49826
chr6.3 mRNA 19474848 19475838 19474848 ID=MS.gene49826.t1;Parent=MS.gene49826
chr6.3 exon 19475560 19475838 19475560 ID=MS.gene49826.t1.exon1;Parent=MS.gene49826.t1
chr6.3 CDS 19475560 19475838 19475560 ID=cds.MS.gene49826.t1;Parent=MS.gene49826.t1
chr6.3 exon 19474848 19475198 19474848 ID=MS.gene49826.t1.exon2;Parent=MS.gene49826.t1
chr6.3 CDS 19474848 19475198 19474848 ID=cds.MS.gene49826.t1;Parent=MS.gene49826.t1
Gene Sequence

>MS.gene49826

ATGGCAGATAAATCGACACCGTGTGGGGCTTGCAAGCACTTGAAGAAGAAGTGTATTAATGGATGCATCTTTGCACCCTACTTTGGTAAAAAACAAAATGAAGCTAGCTTTGCAGCTGTGCACAAGGTCTTTGGTGCTGCCAATGTGTTGAAGATCTTGTCCAAAATTCCAACTATTCACCGCAAAAAAGCAATGAAGACTATAACCTATGAGGCTCAGGCCAGGATCGCTGATCCAATTAATGGTTGTGTGTCCACCATTAGTGCTTTGGAGAAACAGGTTAACTAGAATATTTATCTATCTTTTGCAGCTTCTATTCACCTTTAATAAACCGTTTACAGAAAGACTTCATTTTCGGTAAGGCAACAATTCTATTCCATAATTTATTTGAGACCTTGAGAGGAGTACTCTCTAAGGTCCCAAACCAACACCACCAGGCCAACCCAAGTGGGTTAAGCAAATGTTCACTTTAGATGAAACAGATAAAAAAATTGCATGCCTAGATTAAATAATCCTCCATTTAATTTCTTTTCAACAAAAATCAGAATATATGGGACAAAAGTAAAAGGTATATACAAAAAAGCATCAAGAATTTTATTCATGCATGAATAATGAATAACTTACCTTATGGCCAATCCAGGTGGAGGCACTGCAAGCAGAGGTCTCAATGATGAAAGCTCAGCAGATGAACAACGGATTTGCATATGCGAATGCTCTTCAAACCACAGACCTGCAGCATCAGCAAATGCTACAGCAACCAAACTTCAATGTATCTGTGCAACCAGCATACTCCAACAATCCATCTCCTTCCATCGAAGATCTCATGAACATGAACAACTTCAACCCTGTTCTTGCTGCCACCAACAACCTTATGAACATGAACAACTTCAACCCTGGTTTTGATACTACAATGGAGACAGCACCCTCATCATCACAGAGCTTTGAGCCTTTTCAAAACTCCAGGTTCTCTTATCATCAGGGAGACAATTAA
Protein sequence

>MS.gene49826.t1

MADKSTPCGACKHLKKKCINGCIFAPYFGKKQNEASFAAVHKVFGAANVLKILSKIPTIHRKKAMKTITYEAQARIADPINGCVSTISALEKQVEALQAEVSMMKAQQMNNGFAYANALQTTDLQHQQMLQQPNFNVSVQPAYSNNPSPSIEDLMNMNNFNPVLAATNNLMNMNNFNPGFDTTMETAPSSSQSFEPFQNSRFSYHQGDN