AlfalfaGEDB | MS.gene49848

M. sativa cultivar XinJiangDaYe / MS.gene49848

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49848.t1	RHN82753.1	86.5	111	13	2	9	118	125	234	1.80E-45	191.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49848.t1	Q9SV30	75.7	74	18	0	36	109	228	301	1.3e-28	127.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49848.t1	G7IF16	86.5	111	13	2	9	118	137	246	1.3e-45	191.8

TFs/TRs:

Gene ID	Type	Classification
MS.gene49848.t1	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49848.t1	MTR_1g116010	86.486	111	13	2	9	118	137	246	4.98e-64	194
MS.gene49848.t1	MTR_1g094930	63.115	122	35	2	6	117	113	234	6.66e-42	138
MS.gene49848.t1	MTR_1g094930	63.115	122	35	2	6	117	208	329	5.57e-41	138
MS.gene49848.t1	MTR_2g094600	70.270	74	22	0	34	107	213	286	1.58e-33	118
MS.gene49848.t1	MTR_4g071590	55.340	103	40	2	16	118	194	290	3.74e-33	117
MS.gene49848.t1	MTR_4g471590	55.340	103	40	2	16	118	194	290	3.74e-33	117
MS.gene49848.t1	MTR_5g021340	56.075	107	41	2	10	112	269	373	1.43e-32	117
MS.gene49848.t1	MTR_4g058910	75.385	65	16	0	37	101	314	378	1.97e-32	117
MS.gene49848.t1	MTR_3g117380	71.642	67	19	0	35	101	227	293	1.01e-31	114
MS.gene49848.t1	MTR_1g046680	68.571	70	22	0	32	101	167	236	1.81e-31	111
MS.gene49848.t1	MTR_8g076340	55.446	101	42	2	12	112	194	291	2.82e-31	112
MS.gene49848.t1	MTR_6g032830	65.333	75	26	0	29	103	184	258	3.97e-31	111
MS.gene49848.t1	MTR_1g006650	72.308	65	18	0	37	101	234	298	1.16e-30	112
MS.gene49848.t1	MTR_5g007600	63.514	74	27	0	32	105	254	327	2.05e-30	110
MS.gene49848.t1	MTR_5g007600	62.319	69	26	0	32	100	152	220	4.39e-27	102
MS.gene49848.t1	MTR_7g085410	68.116	69	22	0	34	102	185	253	2.13e-30	109
MS.gene49848.t1	MTR_8g013950	62.500	80	30	0	22	101	211	290	3.29e-30	110
MS.gene49848.t1	MTR_3g109760	72.308	65	18	0	37	101	207	271	1.96e-29	108
MS.gene49848.t1	MTR_7g446110	61.290	62	24	0	37	98	187	248	1.08e-21	86.7
MS.gene49848.t1	MTR_7g445980	62.712	59	21	1	41	98	37	95	2.44e-20	79.3
MS.gene49848.t1	MTR_7g445950	51.515	66	32	0	33	98	116	181	7.25e-19	77.8
MS.gene49848.t1	MTR_7g446070	51.515	66	32	0	33	98	128	193	2.98e-18	76.3
MS.gene49848.t1	MTR_5g020230	44.444	54	30	0	16	69	101	154	1.02e-12	62.4
MS.gene49848.t1	MTR_7g112330	60.976	41	16	0	34	74	19	59	1.31e-11	57.8
MS.gene49848.t1	MTR_8g077510	58.333	36	15	0	34	69	122	157	9.99e-11	57.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49848.t1	AT3G54810	77.778	72	16	0	36	107	228	299	2.09e-35	124
MS.gene49848.t1	AT3G54810	77.778	72	16	0	36	107	228	299	2.09e-35	124
MS.gene49848.t1	AT1G08010	69.231	78	21	1	31	108	214	288	3.09e-35	122
MS.gene49848.t1	AT1G08010	69.231	78	21	1	31	108	214	288	3.09e-35	122
MS.gene49848.t1	AT1G08010	69.231	78	21	1	31	108	214	288	3.09e-35	122
MS.gene49848.t1	AT3G24050	59.794	97	33	1	15	111	178	268	7.32e-35	121
MS.gene49848.t1	AT5G66320	55.340	103	44	1	15	115	227	329	6.04e-33	117
MS.gene49848.t1	AT5G66320	55.340	103	44	1	15	115	227	329	6.04e-33	117
MS.gene49848.t1	AT4G36240	50.926	108	52	1	1	107	127	234	1.09e-32	114
MS.gene49848.t1	AT1G08000	67.568	74	21	1	35	108	216	286	3.13e-32	115
MS.gene49848.t1	AT1G08000	67.568	74	21	1	35	108	216	286	3.13e-32	115
MS.gene49848.t1	AT4G34680	60.759	79	31	0	33	111	176	254	1.13e-31	112
MS.gene49848.t1	AT4G34680	60.759	79	31	0	33	111	176	254	1.13e-31	112
MS.gene49848.t1	AT3G51080	66.667	75	23	1	37	111	221	293	2.10e-31	113
MS.gene49848.t1	AT2G28340	67.606	71	20	1	39	109	193	260	4.76e-30	109
MS.gene49848.t1	AT5G25830	70.769	65	19	0	37	101	219	283	5.25e-30	110
MS.gene49848.t1	AT4G32890	69.231	65	20	0	37	101	197	261	5.62e-30	109
MS.gene49848.t1	AT3G60530	60.811	74	29	0	36	109	157	230	1.48e-29	106
MS.gene49848.t1	AT2G45050	63.514	74	23	1	36	105	178	251	2.90e-29	106
MS.gene49848.t1	AT3G45170	56.944	72	31	0	34	105	112	183	3.61e-28	102

Find 0 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	CAAGAAGAAAAAGAAAACAA+AGG	+	11061:8310-8329	MS.gene49848:CDS	25.0%
!!!	CTTTGTTTTCTTTTTCTTCT+TGG	-	11061:8312-8331	MS.gene49848:intergenic	25.0%
	AGACGCAAGGATAATAATTC+TGG	+	11061:8581-8600	MS.gene49848:CDS	35.0%
	TCCAGGAGATCATAATACTT+TGG	+	11061:8349-8368	MS.gene49848:CDS	35.0%
!	ACCAAAGTATTATGATCTCC+TGG	-	11061:8353-8372	MS.gene49848:intergenic	35.0%
	AAAACACTCTGCAATGCTTG+CGG	+	11061:8443-8462	MS.gene49848:CDS	40.0%
	GAAGAAATGCATGCATTGTG+AGG	+	11061:8379-8398	MS.gene49848:CDS	40.0%
	GAAGATCCGGAGAAAATGTT+GGG	-	11061:8520-8539	MS.gene49848:intergenic	40.0%
	GTCTCATCACTCTCATTTCA+AGG	-	11061:8565-8584	MS.gene49848:intergenic	40.0%
	TAATTCTGGTATTCTCGCCT+TGG	+	11061:8595-8614	MS.gene49848:CDS	40.0%
	TGAAGATCCGGAGAAAATGT+TGG	-	11061:8521-8540	MS.gene49848:intergenic	40.0%
	TGTGAGTTAGAGTGAAGATC+CGG	-	11061:8533-8552	MS.gene49848:intergenic	40.0%
	AATGAGAGTGATGAGACGCA+AGG	+	11061:8568-8587	MS.gene49848:CDS	45.0%
!	CTTCTTGGACTCTAGAGAAG+AGG	-	11061:8297-8316	MS.gene49848:intergenic	45.0%
!	GACTCTAGAGAAGAGGAAGT+GGG	-	11061:8290-8309	MS.gene49848:intergenic	45.0%
!	TGCTAGCCCAACATTTTCTC+CGG	+	11061:8511-8530	MS.gene49848:CDS	45.0%
!!	GAAAATGTTGGGCTAGCAAC+AGG	-	11061:8509-8528	MS.gene49848:intergenic	45.0%
	AAGACACCACAATGGAGGTC+AGG	+	11061:8407-8426	MS.gene49848:CDS	50.0%
	AGACACCACAATGGAGGTCA+GGG	+	11061:8408-8427	MS.gene49848:CDS	50.0%
	TAGCAACAGGCCGGTATTCA+GGG	-	11061:8496-8515	MS.gene49848:intergenic	50.0%
	TGACCTCCATTGTGGTGTCT+TGG	-	11061:8408-8427	MS.gene49848:intergenic	50.0%
!	GGACTCTAGAGAAGAGGAAG+TGG	-	11061:8291-8310	MS.gene49848:intergenic	50.0%
	AGGCGACCAAGACACCACAA+TGG	+	11061:8399-8418	MS.gene49848:CDS	55.0%
	CGACCAAGACACCACAATGG+AGG	+	11061:8402-8421	MS.gene49848:CDS	55.0%
	CTAGCAACAGGCCGGTATTC+AGG	-	11061:8497-8516	MS.gene49848:intergenic	55.0%
	GCCGGTATTCAGGGCAAAGT+CGG	-	11061:8487-8506	MS.gene49848:intergenic	55.0%
	TCTCCTGGAGCAGCAAGAAG+AGG	-	11061:8338-8357	MS.gene49848:intergenic	55.0%
	TCTGCAATGCTTGCGGCGTT+CGG	+	11061:8450-8469	MS.gene49848:CDS	55.0%
!	GCCGACTTTGCCCTGAATAC+CGG	+	11061:8483-8502	MS.gene49848:CDS	55.0%
!!	ATGTTGGGCTAGCAACAGGC+CGG	-	11061:8505-8524	MS.gene49848:intergenic	55.0%
!!	CAGAGTGTTTTCAGCCCCTC+TGG	-	11061:8434-8453	MS.gene49848:intergenic	55.0%
	AATGGAGGTCAGGGCCAGAG+GGG	+	11061:8417-8436	MS.gene49848:CDS	60.0%
	ACAATGGAGGTCAGGGCCAG+AGG	+	11061:8415-8434	MS.gene49848:CDS	60.0%
	CAATGGAGGTCAGGGCCAGA+GGG	+	11061:8416-8435	MS.gene49848:CDS	60.0%
	TCTGGCCCTGACCTCCATTG+TGG	-	11061:8416-8435	MS.gene49848:intergenic	60.0%
	TGCGGCGTTCGGTACAAGTC+AGG	+	11061:8461-8480	MS.gene49848:CDS	60.0%
	GCGCCTCTTCTTGCTGCTCC+AGG	+	11061:8332-8351	MS.gene49848:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
11061	gene	8272	8628	8272	ID=MS.gene49848
11061	mRNA	8272	8628	8272	ID=MS.gene49848.t1;Parent=MS.gene49848
11061	exon	8272	8628	8272	ID=MS.gene49848.t1.exon1;Parent=MS.gene49848.t1
11061	CDS	8272	8628	8272	ID=cds.MS.gene49848.t1;Parent=MS.gene49848.t1

Gene Sequence	>MS.gene49848 ATGCAACTCATTTCTCCCACTTCCTCTTCTCTAGAGTCCAAGAAGAAAAAGAAAACAAAGGCGCCTCTTCTTGCTGCTCCAGGAGATCATAATACTTTGGTACTTGTGAAGAAATGCATGCATTGTGAGGCGACCAAGACACCACAATGGAGGTCAGGGCCAGAGGGGCTGAAAACACTCTGCAATGCTTGCGGCGTTCGGTACAAGTCAGGCCGACTTTGCCCTGAATACCGGCCTGTTGCTAGCCCAACATTTTCTCCGGATCTTCACTCTAACTCACATAAGAAGATCCTTGAAATGAGAGTGATGAGACGCAAGGATAATAATTCTGGTATTCTCGCCTTGGAATACGTGTGA
Protein sequence	>MS.gene49848.t1 MQLISPTSSSLESKKKKKTKAPLLAAPGDHNTLVLVKKCMHCEATKTPQWRSGPEGLKTLCNACGVRYKSGRLCPEYRPVASPTFSPDLHSNSHKKILEMRVMRRKDNNSGILALEYV