Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49869.t1 | XP_003597027.2 | 96 | 425 | 17 | 0 | 1 | 425 | 28 | 452 | 1.10E-241 | 845.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49869.t1 | Q5PP37 | 62.1 | 425 | 145 | 2 | 1 | 425 | 27 | 435 | 6.3e-150 | 531.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49869.t1 | G7IKK8 | 96.0 | 425 | 17 | 0 | 1 | 425 | 28 | 452 | 7.7e-242 | 845.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49869.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49869.t1 | MTR_2g088820 | 96.000 | 425 | 17 | 0 | 1 | 425 | 28 | 452 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49869.t1 | AT3G21820 | 64.471 | 425 | 135 | 5 | 1 | 425 | 27 | 435 | 0.0 | 552 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15130 | gene | 209379 | 216534 | 209379 | ID=MS.gene49869 |
| 15130 | mRNA | 209379 | 216534 | 209379 | ID=MS.gene49869.t1;Parent=MS.gene49869 |
| 15130 | exon | 209379 | 209460 | 209379 | ID=MS.gene49869.t1.exon1;Parent=MS.gene49869.t1 |
| 15130 | CDS | 209379 | 209460 | 209379 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 209631 | 209716 | 209631 | ID=MS.gene49869.t1.exon2;Parent=MS.gene49869.t1 |
| 15130 | CDS | 209631 | 209716 | 209631 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 209788 | 210131 | 209788 | ID=MS.gene49869.t1.exon3;Parent=MS.gene49869.t1 |
| 15130 | CDS | 209788 | 210131 | 209788 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 210826 | 210938 | 210826 | ID=MS.gene49869.t1.exon4;Parent=MS.gene49869.t1 |
| 15130 | CDS | 210826 | 210938 | 210826 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 211048 | 211079 | 211048 | ID=MS.gene49869.t1.exon5;Parent=MS.gene49869.t1 |
| 15130 | CDS | 211048 | 211079 | 211048 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 211661 | 211812 | 211661 | ID=MS.gene49869.t1.exon6;Parent=MS.gene49869.t1 |
| 15130 | CDS | 211661 | 211812 | 211661 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 212025 | 212112 | 212025 | ID=MS.gene49869.t1.exon7;Parent=MS.gene49869.t1 |
| 15130 | CDS | 212025 | 212112 | 212025 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 212189 | 212237 | 212189 | ID=MS.gene49869.t1.exon8;Parent=MS.gene49869.t1 |
| 15130 | CDS | 212189 | 212237 | 212189 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 212334 | 212388 | 212334 | ID=MS.gene49869.t1.exon9;Parent=MS.gene49869.t1 |
| 15130 | CDS | 212334 | 212388 | 212334 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 212579 | 212648 | 212579 | ID=MS.gene49869.t1.exon10;Parent=MS.gene49869.t1 |
| 15130 | CDS | 212579 | 212648 | 212579 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 212729 | 212798 | 212729 | ID=MS.gene49869.t1.exon11;Parent=MS.gene49869.t1 |
| 15130 | CDS | 212729 | 212798 | 212729 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 216112 | 216188 | 216112 | ID=MS.gene49869.t1.exon12;Parent=MS.gene49869.t1 |
| 15130 | CDS | 216112 | 216188 | 216112 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| 15130 | exon | 216478 | 216534 | 216478 | ID=MS.gene49869.t1.exon13;Parent=MS.gene49869.t1 |
| 15130 | CDS | 216478 | 216534 | 216478 | ID=cds.MS.gene49869.t1;Parent=MS.gene49869.t1 |
| Gene Sequence |
| Protein sequence |
