Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49870.t1 | XP_003597027.2 | 94.7 | 431 | 17 | 1 | 1 | 431 | 28 | 452 | 1.70E-239 | 838.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49870.t1 | Q5PP37 | 61.3 | 431 | 145 | 3 | 1 | 431 | 27 | 435 | 1.0e-147 | 524.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49870.t1 | G7IKK8 | 94.7 | 431 | 17 | 1 | 1 | 431 | 28 | 452 | 1.3e-239 | 838.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49870.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49870.t1 | MTR_2g088820 | 94.664 | 431 | 17 | 1 | 1 | 431 | 28 | 452 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49870.t1 | AT3G21820 | 63.573 | 431 | 135 | 6 | 1 | 431 | 27 | 435 | 0.0 | 546 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15121 | gene | 1738 | 8887 | 1738 | ID=MS.gene49870 |
| 15121 | mRNA | 1738 | 8887 | 1738 | ID=MS.gene49870.t1;Parent=MS.gene49870 |
| 15121 | exon | 1738 | 1819 | 1738 | ID=MS.gene49870.t1.exon1;Parent=MS.gene49870.t1 |
| 15121 | CDS | 1738 | 1819 | 1738 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 1989 | 2074 | 1989 | ID=MS.gene49870.t1.exon2;Parent=MS.gene49870.t1 |
| 15121 | CDS | 1989 | 2074 | 1989 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 2146 | 2489 | 2146 | ID=MS.gene49870.t1.exon3;Parent=MS.gene49870.t1 |
| 15121 | CDS | 2146 | 2489 | 2146 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 3182 | 3294 | 3182 | ID=MS.gene49870.t1.exon4;Parent=MS.gene49870.t1 |
| 15121 | CDS | 3182 | 3294 | 3182 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 3404 | 3435 | 3404 | ID=MS.gene49870.t1.exon5;Parent=MS.gene49870.t1 |
| 15121 | CDS | 3404 | 3435 | 3404 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 4017 | 4167 | 4017 | ID=MS.gene49870.t1.exon6;Parent=MS.gene49870.t1 |
| 15121 | CDS | 4017 | 4167 | 4017 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 4359 | 4465 | 4359 | ID=MS.gene49870.t1.exon7;Parent=MS.gene49870.t1 |
| 15121 | CDS | 4359 | 4465 | 4359 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 4542 | 4590 | 4542 | ID=MS.gene49870.t1.exon8;Parent=MS.gene49870.t1 |
| 15121 | CDS | 4542 | 4590 | 4542 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 4687 | 4741 | 4687 | ID=MS.gene49870.t1.exon9;Parent=MS.gene49870.t1 |
| 15121 | CDS | 4687 | 4741 | 4687 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 4932 | 5001 | 4932 | ID=MS.gene49870.t1.exon10;Parent=MS.gene49870.t1 |
| 15121 | CDS | 4932 | 5001 | 4932 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 5082 | 5151 | 5082 | ID=MS.gene49870.t1.exon11;Parent=MS.gene49870.t1 |
| 15121 | CDS | 5082 | 5151 | 5082 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 8465 | 8541 | 8465 | ID=MS.gene49870.t1.exon12;Parent=MS.gene49870.t1 |
| 15121 | CDS | 8465 | 8541 | 8465 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| 15121 | exon | 8831 | 8887 | 8831 | ID=MS.gene49870.t1.exon13;Parent=MS.gene49870.t1 |
| 15121 | CDS | 8831 | 8887 | 8831 | ID=cds.MS.gene49870.t1;Parent=MS.gene49870.t1 |
| Gene Sequence |
| Protein sequence |
