AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49980.t1 MTR_1g008290 70.714 140 38 1 94 233 8 144 1.74e-74 224
MS.gene49980.t1 MTR_5g032260 56.075 107 47 0 68 174 299 405 2.64e-34 128
MS.gene49980.t1 MTR_0402s0040 28.643 199 134 3 20 210 2 200 8.35e-21 92.0
MS.gene49980.t1 MTR_2g098880 29.940 167 89 4 1 139 11 177 1.09e-20 89.4
MS.gene49980.t1 MTR_2g098880 31.884 138 79 3 17 139 28 165 2.41e-20 87.8
MS.gene49980.t1 MTR_6g051425 24.107 224 153 5 39 249 15 234 6.69e-20 88.2
MS.gene49980.t1 MTR_1g070355 27.626 257 163 9 1 248 44 286 2.00e-19 88.2
MS.gene49980.t1 MTR_5g076070 29.688 192 123 6 14 196 27 215 2.38e-18 83.2
MS.gene49980.t1 MTR_7g446520 29.126 206 131 5 45 248 92 284 2.69e-17 80.9
MS.gene49980.t1 MTR_3g006370 28.777 139 93 2 6 139 16 153 2.08e-15 73.9
MS.gene49980.t1 MTR_4g035820 29.915 234 143 8 20 239 56 282 4.06e-15 75.5
MS.gene49980.t1 MTR_7g446480 31.884 138 92 2 113 248 140 277 7.19e-15 73.6
MS.gene49980.t1 MTR_1g013060 27.143 210 140 6 40 238 23 230 1.10e-14 72.0
MS.gene49980.t1 MTR_4g067290 33.645 107 66 2 38 140 73 178 2.57e-13 68.6
MS.gene49980.t1 MTR_4g067290 33.645 107 66 2 38 140 71 176 2.58e-13 68.6
MS.gene49980.t1 MTR_4g067290 33.645 107 66 2 38 140 73 178 2.70e-13 68.6
MS.gene49980.t1 MTR_4g067290 33.645 107 66 2 38 140 53 158 2.73e-13 68.2
MS.gene49980.t1 MTR_4g067290 33.645 107 66 2 38 140 53 158 2.89e-13 68.2
MS.gene49980.t1 MTR_2g098920 30.409 171 97 5 12 161 42 211 4.19e-13 68.2
MS.gene49980.t1 MTR_4g067290 33.645 107 66 2 38 140 113 218 4.62e-13 68.2
MS.gene49980.t1 MTR_7g446510 30.709 127 87 1 123 248 166 292 9.07e-13 67.8
MS.gene49980.t1 MTR_1g019850 28.472 144 90 4 41 178 70 206 4.22e-11 62.0
MS.gene49980.t1 MTR_0856s0010 30.645 124 83 2 40 161 33 155 5.37e-11 60.1
MS.gene49980.t1 MTR_7g446060 31.818 88 60 0 119 206 3 90 7.38e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49980.t1 AT4G15090 44.444 225 119 3 30 249 41 264 8.93e-57 195
MS.gene49980.t1 AT4G15090 44.444 225 119 3 30 249 41 264 8.93e-57 195
MS.gene49980.t1 AT4G15090 44.444 225 119 3 30 249 41 264 8.93e-57 195
MS.gene49980.t1 AT4G15090 44.444 225 119 3 30 249 41 264 8.93e-57 195
MS.gene49980.t1 AT4G15090 44.444 225 119 3 30 249 41 264 8.93e-57 195
MS.gene49980.t1 AT1G76320 45.455 209 106 4 45 250 1 204 7.05e-50 175
MS.gene49980.t1 AT1G76320 45.455 209 106 4 45 250 1 204 7.46e-50 175
MS.gene49980.t1 AT1G76320 45.455 209 106 4 45 250 1 204 7.46e-50 175
MS.gene49980.t1 AT1G76320 45.455 209 106 4 45 250 1 204 7.58e-50 174
MS.gene49980.t1 AT3G22170 38.938 226 97 3 40 246 69 272 2.85e-45 163
MS.gene49980.t1 AT3G22170 38.938 226 97 3 40 246 69 272 2.85e-45 163
MS.gene49980.t1 AT4G38180 35.714 210 125 4 40 241 72 279 5.63e-34 130
MS.gene49980.t1 AT2G32250 57.143 98 41 1 44 140 41 138 2.29e-29 117
MS.gene49980.t1 AT2G32250 57.143 98 41 1 44 140 41 138 2.29e-29 117
MS.gene49980.t1 AT2G32250 57.143 98 41 1 44 140 41 138 2.29e-29 117
MS.gene49980.t1 AT2G32250 57.143 98 41 1 44 140 41 138 2.31e-29 117
MS.gene49980.t1 AT2G32250 57.143 98 41 1 44 140 41 138 2.31e-29 117
MS.gene49980.t1 AT2G32250 57.143 98 41 1 44 140 41 138 2.46e-29 117
MS.gene49980.t1 AT4G19990 35.714 224 90 7 44 248 24 212 3.01e-29 117
MS.gene49980.t1 AT4G19990 35.714 224 90 7 44 248 24 212 3.01e-29 117
MS.gene49980.t1 AT4G19990 35.714 224 90 7 44 248 24 212 3.02e-29 117
MS.gene49980.t1 AT4G19990 35.714 224 90 7 44 248 24 212 3.02e-29 117
MS.gene49980.t1 AT4G19990 35.714 224 90 7 44 248 38 226 3.71e-29 117
MS.gene49980.t1 AT4G19990 35.714 224 90 7 44 248 24 212 3.74e-29 116
MS.gene49980.t1 AT2G32250 56.701 97 41 1 45 140 1 97 1.51e-28 115
MS.gene49980.t1 AT2G32250 56.701 97 41 1 45 140 1 97 1.51e-28 115
MS.gene49980.t1 AT1G80010 30.453 243 158 4 22 254 76 317 2.50e-21 94.0
MS.gene49980.t1 AT3G06250 29.675 246 122 7 18 247 152 362 2.17e-19 88.2
MS.gene49980.t1 AT3G06250 29.675 246 122 7 18 247 152 362 2.17e-19 88.2
MS.gene49980.t1 AT3G06250 29.675 246 122 7 18 247 152 362 2.17e-19 88.2
MS.gene49980.t1 AT1G52520 30.000 210 136 4 41 248 85 285 3.13e-19 87.8
MS.gene49980.t1 AT3G59470 32.192 146 91 3 1 140 29 172 7.15e-18 81.3
MS.gene49980.t1 AT3G59470 32.192 146 91 3 1 140 29 172 7.15e-18 81.3
MS.gene49980.t1 AT3G59470 32.192 146 91 3 1 140 41 184 1.03e-17 80.9
MS.gene49980.t1 AT5G18960 30.808 198 101 5 40 235 210 373 2.50e-16 79.3
MS.gene49980.t1 AT5G18960 30.808 198 101 5 40 235 210 373 2.50e-16 79.3
MS.gene49980.t1 AT2G27110 26.991 226 139 7 25 248 33 234 9.44e-15 74.7
MS.gene49980.t1 AT2G27110 26.991 226 139 7 25 248 33 234 9.44e-15 74.7
MS.gene49980.t1 AT3G07500 36.364 110 66 1 35 140 27 136 5.73e-14 69.7
MS.gene49980.t1 AT1G10240 26.887 212 139 8 41 239 48 256 1.45e-13 70.9
MS.gene49980.t1 AT1G10240 26.887 212 139 8 41 239 48 256 1.45e-13 70.9
MS.gene49980.t1 AT4G12850 33.654 104 60 2 40 138 10 109 2.26e-13 66.2
MS.gene49980.t1 AT2G43280 29.808 104 68 1 40 138 21 124 3.27e-13 67.4
MS.gene49980.t1 AT4G12850 33.654 104 60 2 40 138 10 109 3.92e-13 66.6
MS.gene49980.t1 AT4G12850 33.654 104 60 2 40 138 10 109 1.31e-12 64.3
MS.gene49980.t1 AT5G28530 25.306 245 141 9 41 257 55 285 3.33e-11 63.9
MS.gene49980.t1 AT5G28530 25.306 245 141 9 41 257 55 285 3.33e-11 63.9
MS.gene49980.t1 AT5G28530 25.306 245 141 9 41 257 55 285 3.47e-11 63.9

Find 51 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTCCATTCCAATATA+AGG 0.248593 1.1:-75531637 None:intergenic
AAATAAATTGTGATGGAAAA+TGG 0.250980 1.1:+75531869 MS.gene49980:CDS
GAGACTTATTGATTCTTCTA+TGG 0.270224 1.1:-75531960 None:intergenic
ACCAACACATGAATCATTAT+TGG 0.289874 1.1:-75531587 None:intergenic
GATTCATGTGTTGGTGATTC+AGG 0.295561 1.1:+75531595 MS.gene49980:CDS
TTCATACCCTCCATGTTGTT+TGG 0.327554 1.1:-75532049 None:intergenic
CTCTTTATGCTAAATCTGTT+GGG 0.330055 1.1:+75531689 MS.gene49980:CDS
TCTCTTTATGCTAAATCTGT+TGG 0.349983 1.1:+75531688 MS.gene49980:CDS
GATAGTCAAGAACCTTATAT+TGG 0.357708 1.1:+75531625 MS.gene49980:CDS
TATGCTAAATCTGTTGGGTT+TGG 0.363737 1.1:+75531694 MS.gene49980:CDS
ACTTATGCTTGCACAAGATA+TGG 0.372382 1.1:+75531772 MS.gene49980:CDS
TTGAAACTTTACAACATGTT+GGG 0.410991 1.1:+75531995 MS.gene49980:CDS
CTTGTTTGAAGGTGGATTGT+GGG 0.420941 1.1:+75531830 MS.gene49980:CDS
CCTTGTTTGAAGGTGGATTG+TGG 0.421077 1.1:+75531829 MS.gene49980:CDS
GGAATTTGAGTCACAAGAAA+AGG 0.443890 1.1:+75531651 MS.gene49980:CDS
GTATGAAAACATTGGCTGCT+TGG 0.444885 1.1:+75532065 MS.gene49980:CDS
GGAAAATAATGTGCATATGT+TGG 0.461584 1.1:-75531934 None:intergenic
ATTGAAACTTTACAACATGT+TGG 0.465010 1.1:+75531994 MS.gene49980:CDS
ATGGAAGCAGCCGATGGTAA+TGG 0.467673 1.1:+75531517 MS.gene49980:CDS
TAAGCGTTCAAAGGTTTCTA+CGG 0.505629 1.1:+75531735 MS.gene49980:CDS
TCCATGTTGTTTGGCCATTG+TGG 0.507748 1.1:-75532040 None:intergenic
TAACCCACGTCCTTGTTTGA+AGG 0.509579 1.1:+75531819 MS.gene49980:CDS
CGCGTCAAAATAAATTGTGA+TGG 0.510056 1.1:+75531862 MS.gene49980:CDS
GGGAGATGCAACAGCAATGT+TGG 0.517903 1.1:+75532140 MS.gene49980:CDS
CAAAACTAGTAAGCGTTCAA+AGG 0.522885 1.1:+75531726 MS.gene49980:CDS
ACCAATAATGATTCATGTGT+TGG 0.526162 1.1:+75531586 MS.gene49980:CDS
CCCACGTCCTTGTTTGAAGG+TGG 0.529501 1.1:+75531822 MS.gene49980:CDS
TCAAGAACCTTATATTGGAA+TGG 0.539492 1.1:+75531630 MS.gene49980:CDS
TGAAACTTTACAACATGTTG+GGG 0.549441 1.1:+75531996 MS.gene49980:CDS
TTATTGATTCTTCTATGGCA+AGG 0.552372 1.1:-75531955 None:intergenic
CGTCGTTTGACATTAGAGTC+GGG 0.556413 1.1:+75532120 MS.gene49980:CDS
CCACAATCCACCTTCAAACA+AGG 0.559602 1.1:-75531829 None:intergenic
TCGTCGTTTGACATTAGAGT+CGG 0.559689 1.1:+75532119 MS.gene49980:CDS
TTGTTTGAAGGTGGATTGTG+GGG 0.573057 1.1:+75531831 MS.gene49980:CDS
TCCACCTTCAAACAAGGACG+TGG 0.577393 1.1:-75531823 None:intergenic
GCCACAATGGCCAAACAACA+TGG 0.588315 1.1:+75532039 MS.gene49980:CDS
AACTTGATCTCCATTACCAT+CGG 0.599452 1.1:-75531527 None:intergenic
GAAGCTGACGGCGAAGAGAG+CGG 0.606466 1.1:+75532703 MS.gene49980:CDS
CATTAAAGATCACAATCATG+AGG 0.619087 1.1:+75531906 MS.gene49980:CDS
GAAGAGAGCGGCAAACGTCG+TGG 0.625238 1.1:+75532760 MS.gene49980:CDS
CATGGAGGGTATGAAAACAT+TGG 0.636187 1.1:+75532057 MS.gene49980:CDS
ACATTAATGGAAGCAGCCGA+TGG 0.639840 1.1:+75531511 None:intergenic
AGGACGTGGGTTATGTGCGG+TGG 0.651141 1.1:-75531809 None:intergenic
GAGAGCGGCGAACACCGTCG+TGG 0.675899 1.1:+75532718 MS.gene49980:CDS
GTCGTCGTGATTGAAGCTGA+CGG 0.677752 1.1:+75532691 MS.gene49980:CDS
CAATGGCCAAACAACATGGA+GGG 0.684081 1.1:+75532043 MS.gene49980:CDS
GACGTTCTTTCTCTCCACGA+CGG 0.684607 1.1:-75532732 None:intergenic
ACAAGGACGTGGGTTATGTG+CGG 0.689779 1.1:-75531812 None:intergenic
GAACGTCGTCGTGAAGAGAG+CGG 0.693610 1.1:+75532748 MS.gene49980:CDS
CCACCTTCAAACAAGGACGT+GGG 0.708064 1.1:-75531822 None:intergenic
ACAATGGCCAAACAACATGG+AGG 0.713875 1.1:+75532042 MS.gene49980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAAATTTTTTATTTTC+TGG + chr1.1:75532638-75532657 MS.gene49980:intron 10.0%
!!! ATTTTTTTATGCAATTGATT+TGG + chr1.1:75532197-75532216 MS.gene49980:CDS 15.0%
!! TCAATTGCATAAAAAAATCT+AGG - chr1.1:75532195-75532214 None:intergenic 20.0%
!!! AAATAAATTGTGATGGAAAA+TGG + chr1.1:75531869-75531888 MS.gene49980:CDS 20.0%
! AGAGATGATTATCAAGAATT+TGG + chr1.1:75532267-75532286 MS.gene49980:intron 25.0%
! ATTGAAACTTTACAACATGT+TGG + chr1.1:75531994-75532013 MS.gene49980:CDS 25.0%
! CTCAACATCAATTATATCAT+TGG + chr1.1:75532431-75532450 MS.gene49980:intron 25.0%
! TCAAATTCCATTCCAATATA+AGG - chr1.1:75531640-75531659 None:intergenic 25.0%
! TTGAAACTTTACAACATGTT+GGG + chr1.1:75531995-75532014 MS.gene49980:CDS 25.0%
!! AGGAATTGTTATTGTGTTTA+AGG - chr1.1:75532534-75532553 None:intergenic 25.0%
!! GGAATTGTTATTGTGTTTAA+GGG - chr1.1:75532533-75532552 None:intergenic 25.0%
ACCAACACATGAATCATTAT+TGG - chr1.1:75531590-75531609 None:intergenic 30.0%
ACCAATAATGATTCATGTGT+TGG + chr1.1:75531586-75531605 MS.gene49980:CDS 30.0%
CATTAAAGATCACAATCATG+AGG + chr1.1:75531906-75531925 MS.gene49980:CDS 30.0%
CTCACTATCATACATAATAC+TGG - chr1.1:75532333-75532352 None:intergenic 30.0%
CTCTTTATGCTAAATCTGTT+GGG + chr1.1:75531689-75531708 MS.gene49980:CDS 30.0%
GATAGTCAAGAACCTTATAT+TGG + chr1.1:75531625-75531644 MS.gene49980:CDS 30.0%
GGAAAATAATGTGCATATGT+TGG - chr1.1:75531937-75531956 None:intergenic 30.0%
TCAAGAACCTTATATTGGAA+TGG + chr1.1:75531630-75531649 MS.gene49980:CDS 30.0%
TCTCTTTATGCTAAATCTGT+TGG + chr1.1:75531688-75531707 MS.gene49980:CDS 30.0%
TGAAACTTTACAACATGTTG+GGG + chr1.1:75531996-75532015 MS.gene49980:CDS 30.0%
TTCGATACAACATATATCAC+AGG + chr1.1:75532303-75532322 MS.gene49980:intron 30.0%
! AACCAAAATTTTTGCCACAA+TGG + chr1.1:75532026-75532045 MS.gene49980:CDS 30.0%
! AATGGAGATCAAGTTTTTGA+TGG + chr1.1:75531535-75531554 MS.gene49980:CDS 30.0%
! ATCGTGTAAGAAACGTATTT+TGG + chr1.1:75532229-75532248 MS.gene49980:intron 30.0%
! ATGATAGTGAGTATCATGTA+TGG + chr1.1:75532342-75532361 MS.gene49980:intron 30.0%
! ATGCCATTTCTTCTTCATTT+CGG + chr1.1:75532555-75532574 MS.gene49980:intron 30.0%
! ATGGAGATCAAGTTTTTGAT+GGG + chr1.1:75531536-75531555 MS.gene49980:CDS 30.0%
! TCGTGTAAGAAACGTATTTT+GGG + chr1.1:75532230-75532249 MS.gene49980:intron 30.0%
!! AGAACGATTTTGTTTGTTGA+TGG - chr1.1:75532399-75532418 None:intergenic 30.0%
!! GAGACTTATTGATTCTTCTA+TGG - chr1.1:75531963-75531982 None:intergenic 30.0%
!! TTATTGATTCTTCTATGGCA+AGG - chr1.1:75531958-75531977 None:intergenic 30.0%
!!! GATTTTGTTTGTTGATGGTT+TGG - chr1.1:75532394-75532413 None:intergenic 30.0%
AACTTGATCTCCATTACCAT+CGG - chr1.1:75531530-75531549 None:intergenic 35.0%
AATGAAGAAGAAATGGCATC+AGG - chr1.1:75532554-75532573 None:intergenic 35.0%
ACTTATGCTTGCACAAGATA+TGG + chr1.1:75531772-75531791 MS.gene49980:CDS 35.0%
ATAGTGAGTATCATGTATGG+TGG + chr1.1:75532345-75532364 MS.gene49980:intron 35.0%
CAAAACTAGTAAGCGTTCAA+AGG + chr1.1:75531726-75531745 MS.gene49980:CDS 35.0%
CGCGTCAAAATAAATTGTGA+TGG + chr1.1:75531862-75531881 MS.gene49980:CDS 35.0%
GAACCGAAATGAAGAAGAAA+TGG - chr1.1:75532561-75532580 None:intergenic 35.0%
GGAATTTGAGTCACAAGAAA+AGG + chr1.1:75531651-75531670 MS.gene49980:CDS 35.0%
TAAGCGTTCAAAGGTTTCTA+CGG + chr1.1:75531735-75531754 MS.gene49980:CDS 35.0%
TATGCTAAATCTGTTGGGTT+TGG + chr1.1:75531694-75531713 MS.gene49980:CDS 35.0%
! GATCAAGTTTTTGATGGGAA+TGG + chr1.1:75531541-75531560 MS.gene49980:CDS 35.0%
! GGTCTTTCTTTTTCCTGTTT+TGG - chr1.1:75532512-75532531 None:intergenic 35.0%
!! TGTAAGAAACGTATTTTGGG+TGG + chr1.1:75532233-75532252 MS.gene49980:intron 35.0%
!!! ATTTATTTTGACGCGTAAGC+TGG - chr1.1:75531857-75531876 None:intergenic 35.0%
!!! TGAACGCTTACTAGTTTTGA+TGG - chr1.1:75531725-75531744 None:intergenic 35.0%
GTGGTATGCATCTCTTTAAC+AGG + chr1.1:75532364-75532383 MS.gene49980:intron 40.0%
TCGTCGTTTGACATTAGAGT+CGG + chr1.1:75532119-75532138 MS.gene49980:CDS 40.0%
TTCATACCCTCCATGTTGTT+TGG - chr1.1:75532052-75532071 None:intergenic 40.0%
! CATGGAGGGTATGAAAACAT+TGG + chr1.1:75532057-75532076 MS.gene49980:CDS 40.0%
! GGCCATTGTGGCAAAAATTT+TGG - chr1.1:75532031-75532050 None:intergenic 40.0%
! GTATGAAAACATTGGCTGCT+TGG + chr1.1:75532065-75532084 MS.gene49980:CDS 40.0%
!! CTTGTTTGAAGGTGGATTGT+GGG + chr1.1:75531830-75531849 MS.gene49980:CDS 40.0%
!! GATTCATGTGTTGGTGATTC+AGG + chr1.1:75531595-75531614 MS.gene49980:CDS 40.0%
!! TTGTTTGAAGGTGGATTGTG+GGG + chr1.1:75531831-75531850 MS.gene49980:CDS 40.0%
!!! ATCACGACGACGTTCTTTTT+TGG - chr1.1:75532682-75532701 None:intergenic 40.0%
!!! CTTTTTTGGCGTTTCAGTTG+TGG - chr1.1:75532668-75532687 None:intergenic 40.0%
ACAATGGCCAAACAACATGG+AGG + chr1.1:75532042-75532061 MS.gene49980:CDS 45.0%
ATTACAAACTCCCAGCGCTA+AGG + chr1.1:75532472-75532491 MS.gene49980:intron 45.0%
CAATGGCCAAACAACATGGA+GGG + chr1.1:75532043-75532062 MS.gene49980:CDS 45.0%
CCACAATCCACCTTCAAACA+AGG - chr1.1:75531832-75531851 None:intergenic 45.0%
CGTCGTTTGACATTAGAGTC+GGG + chr1.1:75532120-75532139 MS.gene49980:CDS 45.0%
! TAACCCACGTCCTTGTTTGA+AGG + chr1.1:75531819-75531838 MS.gene49980:CDS 45.0%
! TCCATGTTGTTTGGCCATTG+TGG - chr1.1:75532043-75532062 None:intergenic 45.0%
!! CCTTGTTTGAAGGTGGATTG+TGG + chr1.1:75531829-75531848 MS.gene49980:CDS 45.0%
AACACGGGGACAACCAAAAC+AGG + chr1.1:75532496-75532515 MS.gene49980:intron 50.0%
ATGGAAGCAGCCGATGGTAA+TGG + chr1.1:75531517-75531536 MS.gene49980:CDS 50.0%
CCACCTTCAAACAAGGACGT+GGG - chr1.1:75531825-75531844 None:intergenic 50.0%
GACGTTCTTTCTCTCCACGA+CGG - chr1.1:75532735-75532754 None:intergenic 50.0%
GCCACAATGGCCAAACAACA+TGG + chr1.1:75532039-75532058 MS.gene49980:CDS 50.0%
GCGCTGGGAGTTTGTAATTG+TGG - chr1.1:75532470-75532489 None:intergenic 50.0%
GGGAGATGCAACAGCAATGT+TGG + chr1.1:75532140-75532159 MS.gene49980:CDS 50.0%
GTCGTCGTGATTGAAGCTGA+CGG + chr1.1:75532691-75532710 MS.gene49980:CDS 50.0%
TCCACCTTCAAACAAGGACG+TGG - chr1.1:75531826-75531845 None:intergenic 50.0%
! ACAAGGACGTGGGTTATGTG+CGG - chr1.1:75531815-75531834 None:intergenic 50.0%
AACCAGAGCTGAGAACGTGC+AGG + chr1.1:75532581-75532600 MS.gene49980:intron 55.0%
GAACGTCGTCGTGAAGAGAG+CGG + chr1.1:75532748-75532767 MS.gene49980:CDS 55.0%
! CCCACGTCCTTGTTTGAAGG+TGG + chr1.1:75531822-75531841 MS.gene49980:CDS 55.0%
CTCCCAGCGCTAAGGCAACA+CGG + chr1.1:75532480-75532499 MS.gene49980:intron 60.0%
CTCCTGCACGTTCTCAGCTC+TGG - chr1.1:75532586-75532605 None:intergenic 60.0%
GAAGAGAGCGGCAAACGTCG+TGG + chr1.1:75532760-75532779 MS.gene49980:CDS 60.0%
GAAGCTGACGGCGAAGAGAG+CGG + chr1.1:75532703-75532722 MS.gene49980:CDS 60.0%
TCCCAGCGCTAAGGCAACAC+GGG + chr1.1:75532481-75532500 MS.gene49980:intron 60.0%
! AGGACGTGGGTTATGTGCGG+TGG - chr1.1:75531812-75531831 None:intergenic 60.0%
CCCAGCGCTAAGGCAACACG+GGG + chr1.1:75532482-75532501 MS.gene49980:intron 65.0%
CCCCGTGTTGCCTTAGCGCT+GGG - chr1.1:75532485-75532504 None:intergenic 65.0%
TCCCCGTGTTGCCTTAGCGC+TGG - chr1.1:75532486-75532505 None:intergenic 65.0%
GAGAGCGGCGAACACCGTCG+TGG + chr1.1:75532718-75532737 MS.gene49980:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 75531517 75532810 75531517 ID=MS.gene49980
chr1.1 mRNA 75531517 75532810 75531517 ID=MS.gene49980.t1;Parent=MS.gene49980
chr1.1 exon 75531517 75532233 75531517 ID=MS.gene49980.t1.exon1;Parent=MS.gene49980.t1
chr1.1 CDS 75531517 75532233 75531517 ID=cds.MS.gene49980.t1;Parent=MS.gene49980.t1
chr1.1 exon 75532688 75532810 75532688 ID=MS.gene49980.t1.exon2;Parent=MS.gene49980.t1
chr1.1 CDS 75532688 75532810 75532688 ID=cds.MS.gene49980.t1;Parent=MS.gene49980.t1
Gene Sequence

>MS.gene49980

ATGGAAGCAGCCGATGGTAATGGAGATCAAGTTTTTGATGGGAATGGAGAGCAAGTTGTTAACGAGACTACCAATAATGATTCATGTGTTGGTGATTCAGGAGCTAATGATAGTCAAGAACCTTATATTGGAATGGAATTTGAGTCACAAGAAAAGGCATACTCATTCTACTCTCTTTATGCTAAATCTGTTGGGTTTGGAATTTCCATCAAAACTAGTAAGCGTTCAAAGGTTTCTACGGAATTTATTGATGTGACTTATGCTTGCACAAGATATGGAAAAAAGAGAGCATCCACCGCACATAACCCACGTCCTTGTTTGAAGGTGGATTGTGGGGCCAGCTTACGCGTCAAAATAAATTGTGATGGAAAATGGATTGTTCATAGCTTCATTAAAGATCACAATCATGAGGTTTTTCCAACATATGCACATTATTTTCCTTGCCATAGAAGAATCAATAAGTCTCAAAAGAACTGTATTGAAACTTTACAACATGTTGGGGTGAAAACAACCAAAATTTTTGCCACAATGGCCAAACAACATGGAGGGTATGAAAACATTGGCTGCTTGGAGAAAGACATTAGAAATCATTTAGATAAAAGTCGTCGTTTGACATTAGAGTCGGGAGATGCAACAGCAATGTTGGAGTGTTTTATGCTTATGCAAGAAGAAAATCCTAGATTTTTTTATGCAATTGATTTGGATGATGAAGATCGTGTAAGAAACGTATTTTGGGTGGATGCAAAAGTTAGAGATGATTATCAAGAATTTGGAGATGTGATTTCATTCGATACAACATATATCACAGGACAACCAGTATTATGTATGATAGTGAGTATCATGTATGGTGGTATGCATCTCTTTAACAGGACAACCAAACCATCAACAAACAAAATCGTTCTTTTATTATTTAACTCAACATCAATTATATCATTGGTGCTGCAAAAACACCACAATTACAAACTCCCAGCGCTAAGGCAACACGGGGACAACCAAAACAGGAAAAAGAAAGACCCTTAAACACAATAACAATTCCTGATGCCATTTCTTCTTCATTTCGGTTCAACCAGAGCTGAGAACGTGCAGGAGAATTTAAATTTAAGCTTTCTTTTTCAATTTAACAAAAAAATTTTTTATTTTCTGGACAGCCACAACTGAAACGCCAAAAAAGAACGTCGTCGTGATTGAAGCTGACGGCGAAGAGAGCGGCGAACACCGTCGTGGAGAGAAAGAACGTCGTCGTGAAGAGAGCGGCAAACGTCGTGGAGAGAAAGAACACCGTCGTGAAAATTGA
Protein sequence

>MS.gene49980.t1

MEAADGNGDQVFDGNGEQVVNETTNNDSCVGDSGANDSQEPYIGMEFESQEKAYSFYSLYAKSVGFGISIKTSKRSKVSTEFIDVTYACTRYGKKRASTAHNPRPCLKVDCGASLRVKINCDGKWIVHSFIKDHNHEVFPTYAHYFPCHRRINKSQKNCIETLQHVGVKTTKIFATMAKQHGGYENIGCLEKDIRNHLDKSRRLTLESGDATAMLECFMLMQEENPRFFYAIDLDDEDRNVVVIEADGEESGEHRRGEKERRREESGKRRGEKEHRREN