AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50014

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50014.t1 MTR_7g005280 80.078 256 20 6 1 225 1 256 1.50e-134 378
MS.gene50014.t1 MTR_8g099750 60.227 176 59 3 1 166 1 175 7.34e-74 223
MS.gene50014.t1 MTR_3g098810 59.551 178 60 3 1 166 1 178 6.54e-71 216
MS.gene50014.t1 MTR_3g098810 62.252 151 54 2 1 148 1 151 4.72e-64 197
MS.gene50014.t1 MTR_4g089135 54.857 175 50 3 13 158 14 188 6.87e-58 186
MS.gene50014.t1 MTR_7g085220 45.946 222 91 7 11 203 5 226 1.48e-57 186
MS.gene50014.t1 MTR_5g041940 56.962 158 56 3 12 159 1 156 7.59e-57 181
MS.gene50014.t1 MTR_4g081870 53.977 176 69 4 14 179 9 182 8.68e-57 181
MS.gene50014.t1 MTR_2g080010 56.790 162 53 3 14 158 15 176 1.22e-56 184
MS.gene50014.t1 MTR_7g100990 47.368 190 89 4 9 188 6 194 3.05e-55 179
MS.gene50014.t1 MTR_7g070140 87.912 91 11 0 59 149 12 102 6.83e-55 172
MS.gene50014.t1 MTR_3g064580 57.471 174 58 7 12 173 4 173 3.48e-54 184
MS.gene50014.t1 MTR_3g088110 56.962 158 56 4 11 159 4 158 2.14e-53 173
MS.gene50014.t1 MTR_2g064090 43.750 240 103 9 12 224 4 238 2.68e-53 175
MS.gene50014.t1 MTR_2157s0010 54.037 161 58 4 14 158 8 168 3.31e-53 172
MS.gene50014.t1 MTR_3g109340 51.899 158 72 2 11 164 19 176 6.58e-53 174
MS.gene50014.t1 MTR_4g035590 49.727 183 74 6 14 181 8 187 1.13e-52 173
MS.gene50014.t1 MTR_3g109340 51.572 159 72 2 11 164 19 177 1.16e-52 173
MS.gene50014.t1 MTR_2g093810 53.289 152 61 2 14 155 14 165 3.30e-52 171
MS.gene50014.t1 MTR_4g036030 53.896 154 62 4 13 159 6 157 3.57e-52 172
MS.gene50014.t1 MTR_4g108760 50.286 175 74 5 1 164 1 173 6.02e-52 172
MS.gene50014.t1 MTR_1g069805 42.927 205 106 4 14 210 10 211 8.05e-52 169
MS.gene50014.t1 MTR_1g008740 53.125 160 69 3 11 164 24 183 1.03e-51 171
MS.gene50014.t1 MTR_1g008740 53.125 160 69 3 11 164 10 169 1.05e-51 171
MS.gene50014.t1 MTR_5g021710 49.112 169 77 4 11 172 5 171 1.82e-51 170
MS.gene50014.t1 MTR_2g078700 50.625 160 71 2 11 162 20 179 4.78e-51 170
MS.gene50014.t1 MTR_4g101680 50.920 163 71 3 13 168 6 166 1.45e-50 168
MS.gene50014.t1 MTR_3g435150 51.235 162 69 3 11 164 13 172 2.43e-50 166
MS.gene50014.t1 MTR_5g076850 56.688 157 54 6 12 158 4 156 2.44e-50 173
MS.gene50014.t1 MTR_2g062730 50.318 157 70 3 10 159 6 161 3.31e-50 167
MS.gene50014.t1 MTR_5g012080 50.323 155 68 3 13 159 6 159 3.43e-50 167
MS.gene50014.t1 MTR_6g084430 39.912 228 118 5 11 221 2 227 6.58e-50 165
MS.gene50014.t1 MTR_2g079990 53.416 161 67 3 10 164 12 170 7.52e-50 166
MS.gene50014.t1 MTR_8g094580 52.500 160 63 3 10 159 3 159 1.76e-49 163
MS.gene50014.t1 MTR_6g477900 50.303 165 71 4 12 168 4 165 1.80e-49 162
MS.gene50014.t1 MTR_6g012670 50.000 160 70 4 13 164 19 176 5.26e-49 163
MS.gene50014.t1 MTR_7g070150 71.930 114 10 2 102 215 1 92 6.93e-49 155
MS.gene50014.t1 MTR_1g096430 49.091 165 75 3 11 168 4 166 7.22e-49 163
MS.gene50014.t1 MTR_8g076110 51.634 153 65 4 14 159 6 156 9.34e-49 162
MS.gene50014.t1 MTR_8g024480 46.023 176 75 3 2 159 3 176 2.16e-48 164
MS.gene50014.t1 MTR_3g070030 49.701 167 73 5 7 164 12 176 2.47e-48 162
MS.gene50014.t1 MTR_3g096920 52.830 159 63 3 10 159 3 158 5.59e-48 159
MS.gene50014.t1 MTR_8g059170 53.086 162 66 4 11 164 11 170 7.56e-48 160
MS.gene50014.t1 MTR_7g097090 51.370 146 67 2 14 156 10 154 1.26e-47 159
MS.gene50014.t1 MTR_5g014300 42.000 200 102 3 10 197 2 199 3.96e-47 159
MS.gene50014.t1 MTR_6g032770 47.742 155 73 2 12 158 16 170 5.37e-47 159
MS.gene50014.t1 MTR_7g085260 49.708 171 73 5 1 158 1 171 8.97e-47 159
MS.gene50014.t1 MTR_5g040420 40.376 213 107 3 1 199 1 207 1.36e-46 159
MS.gene50014.t1 MTR_2g064470 47.305 167 71 5 4 160 1 160 5.62e-46 155
MS.gene50014.t1 MTR_8g467490 43.575 179 86 2 1 164 1 179 8.52e-46 156
MS.gene50014.t1 MTR_5g090970 50.000 164 66 5 8 156 13 175 1.56e-45 154
MS.gene50014.t1 MTR_2g079990 45.503 189 67 3 10 164 12 198 1.87e-45 155
MS.gene50014.t1 MTR_4g098630 45.977 174 81 4 14 176 6 177 3.11e-45 153
MS.gene50014.t1 MTR_5g090970 49.697 165 66 5 8 156 13 176 4.88e-45 152
MS.gene50014.t1 MTR_3g116070 52.083 144 65 3 8 147 17 160 1.05e-44 152
MS.gene50014.t1 MTR_7g011130 44.444 180 75 4 7 164 12 188 1.22e-44 152
MS.gene50014.t1 MTR_7g011120 47.126 174 73 5 7 164 1 171 1.37e-44 151
MS.gene50014.t1 MTR_2g068880 42.932 191 84 5 6 175 13 199 4.03e-44 150
MS.gene50014.t1 MTR_3g070040 46.429 168 75 3 7 164 1 163 7.01e-44 150
MS.gene50014.t1 MTR_3g096140 47.561 164 70 5 16 168 9 167 9.39e-44 148
MS.gene50014.t1 MTR_3g096920 56.716 134 52 2 10 140 3 133 1.95e-43 149
MS.gene50014.t1 MTR_3g093040 46.452 155 73 3 12 158 106 258 2.05e-43 148
MS.gene50014.t1 MTR_3g096140 47.853 163 71 5 16 168 9 167 7.53e-43 148
MS.gene50014.t1 MTR_2g068920 45.251 179 76 5 1 159 9 185 1.47e-42 145
MS.gene50014.t1 MTR_6g011860 47.500 160 68 4 14 158 15 173 1.86e-42 148
MS.gene50014.t1 MTR_5g069030 50.323 155 67 3 13 159 24 176 2.09e-42 151
MS.gene50014.t1 MTR_3g093050 43.243 185 82 5 14 190 22 191 3.79e-42 150
MS.gene50014.t1 MTR_3g093050 43.243 185 82 5 14 190 22 191 4.54e-42 150
MS.gene50014.t1 MTR_1g090720 49.704 169 67 4 14 167 42 207 1.88e-41 147
MS.gene50014.t1 MTR_0036s0150 48.765 162 69 5 16 167 7 164 1.89e-41 148
MS.gene50014.t1 MTR_1g097300 48.780 164 68 5 16 168 21 179 2.19e-41 148
MS.gene50014.t1 MTR_1g090723 45.810 179 82 5 16 183 10 184 2.74e-41 148
MS.gene50014.t1 MTR_1g090723 45.506 178 83 5 16 183 10 183 5.28e-41 147
MS.gene50014.t1 MTR_1g090723 45.506 178 83 5 16 183 10 183 6.79e-41 147
MS.gene50014.t1 MTR_8g063550 44.578 166 78 4 13 168 5 166 3.29e-40 140
MS.gene50014.t1 MTR_8g063550 44.578 166 78 4 13 168 5 166 8.99e-40 142
MS.gene50014.t1 MTR_8g063550 44.578 166 78 4 13 168 5 166 1.10e-39 141
MS.gene50014.t1 MTR_8g093580 44.578 166 78 4 13 168 5 166 2.77e-39 141
MS.gene50014.t1 MTR_2g086880 46.528 144 67 3 16 155 20 157 9.43e-39 140
MS.gene50014.t1 MTR_2g086880 46.528 144 67 3 16 155 20 157 9.87e-39 141
MS.gene50014.t1 MTR_4g134460 46.104 154 76 4 16 165 56 206 1.87e-37 135
MS.gene50014.t1 MTR_8g023840 45.946 148 71 4 14 155 11 155 2.62e-37 134
MS.gene50014.t1 MTR_4g075980 43.210 162 84 5 1 158 4 161 4.78e-36 129
MS.gene50014.t1 MTR_4g094302 38.922 167 83 4 14 169 11 169 5.62e-35 123
MS.gene50014.t1 MTR_4g094302 44.094 127 62 2 14 138 11 130 1.92e-33 118
MS.gene50014.t1 MTR_3g096140 44.371 151 70 5 31 171 3 149 4.75e-33 122
MS.gene50014.t1 MTR_8g023860 40.667 150 80 4 13 156 11 157 1.59e-32 122
MS.gene50014.t1 MTR_8g023930 38.710 186 95 6 14 193 24 196 5.08e-31 119
MS.gene50014.t1 MTR_2g086690 40.881 159 76 6 15 157 5 161 5.97e-30 112
MS.gene50014.t1 MTR_8g023900 41.250 160 82 5 17 170 196 349 1.04e-29 115
MS.gene50014.t1 MTR_8g023900 39.752 161 88 4 14 168 12 169 1.64e-29 114
MS.gene50014.t1 MTR_4g052620 40.506 158 79 6 14 157 5 161 5.74e-29 109
MS.gene50014.t1 MTR_8g093790 39.241 158 74 6 12 166 8 146 3.16e-28 105
MS.gene50014.t1 MTR_8g094580 52.427 103 39 3 64 159 6 105 3.43e-27 104
MS.gene50014.t1 MTR_8g023880 36.318 201 92 8 14 193 7 192 2.37e-26 102
MS.gene50014.t1 MTR_7g105170 35.714 168 82 7 14 160 4 166 1.32e-25 100
MS.gene50014.t1 MTR_5g061450 75.000 72 14 2 157 225 14 84 1.58e-21 85.1
MS.gene50014.t1 MTR_3g096400 34.545 165 78 7 12 156 5 159 6.05e-20 84.7
MS.gene50014.t1 MTR_7g083370 32.394 142 87 5 7 143 3 140 5.86e-19 80.5
MS.gene50014.t1 MTR_7g083360 34.815 135 79 6 7 136 3 133 6.69e-19 80.5
MS.gene50014.t1 MTR_5g061420 72.222 72 16 2 157 225 14 84 1.52e-18 77.4
MS.gene50014.t1 MTR_7g083330 35.294 136 79 5 6 136 10 141 6.83e-18 79.0
MS.gene50014.t1 MTR_1g045470 35.417 144 80 5 22 154 13 154 5.46e-17 78.6
MS.gene50014.t1 MTR_7g116460 32.877 146 85 5 20 154 11 154 9.92e-16 73.2
MS.gene50014.t1 MTR_4g078875 28.033 239 139 12 14 225 48 280 3.42e-14 70.5
MS.gene50014.t1 MTR_2g014680 32.653 147 71 8 14 138 53 193 1.26e-12 66.2
MS.gene50014.t1 MTR_4g088245 29.310 174 97 9 14 165 68 237 7.03e-12 63.9
MS.gene50014.t1 MTR_8g069160 30.612 147 80 7 14 141 68 211 2.20e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50014.t1 AT5G13180 73.054 167 43 1 1 165 1 167 8.77e-92 270
MS.gene50014.t1 AT2G33480 60.488 205 77 3 1 203 1 203 1.74e-85 254
MS.gene50014.t1 AT2G33480 59.903 207 77 3 1 203 1 205 3.78e-85 254
MS.gene50014.t1 AT1G61110 56.886 167 53 4 10 158 12 177 1.09e-56 183
MS.gene50014.t1 AT1G77450 49.746 197 85 4 10 196 6 198 1.85e-56 180
MS.gene50014.t1 AT3G04070 55.689 167 58 4 8 158 4 170 3.81e-56 182
MS.gene50014.t1 AT1G69490 57.143 161 56 4 14 164 9 166 3.88e-56 180
MS.gene50014.t1 AT5G39610 45.714 210 99 5 12 208 18 225 5.08e-55 177
MS.gene50014.t1 AT1G65910 45.933 209 91 6 12 210 4 200 4.36e-54 183
MS.gene50014.t1 AT3G04070 52.542 177 52 4 14 158 10 186 5.06e-54 177
MS.gene50014.t1 AT5G07680 53.086 162 66 4 11 164 14 173 8.67e-54 176
MS.gene50014.t1 AT5G61430 54.321 162 64 5 11 164 13 172 8.84e-54 176
MS.gene50014.t1 AT5G07680 54.088 159 63 4 14 164 3 159 1.38e-53 174
MS.gene50014.t1 AT2G24430 53.086 162 71 2 8 164 10 171 1.41e-53 174
MS.gene50014.t1 AT2G24430 53.086 162 71 2 8 164 10 171 1.41e-53 174
MS.gene50014.t1 AT3G15510 56.329 158 52 3 18 158 21 178 3.02e-53 175
MS.gene50014.t1 AT1G12260 53.165 158 65 4 14 164 7 162 1.04e-52 173
MS.gene50014.t1 AT1G33280 53.947 152 62 3 14 159 8 157 1.14e-52 172
MS.gene50014.t1 AT5G17260 50.289 173 75 3 12 175 4 174 1.15e-52 176
MS.gene50014.t1 AT3G03200 41.304 230 117 5 12 225 4 231 1.29e-52 176
MS.gene50014.t1 AT1G54330 57.792 154 54 3 12 158 4 153 1.63e-52 171
MS.gene50014.t1 AT4G27410 50.000 170 77 3 11 174 11 178 1.78e-52 171
MS.gene50014.t1 AT1G12260 53.165 158 65 4 14 164 7 162 3.66e-52 173
MS.gene50014.t1 AT3G18400 52.830 159 68 4 11 164 2 158 4.39e-52 171
MS.gene50014.t1 AT4G10350 53.548 155 61 4 14 159 9 161 6.28e-52 171
MS.gene50014.t1 AT5G53950 52.941 153 64 2 14 158 17 169 5.82e-51 169
MS.gene50014.t1 AT1G76420 51.553 161 70 4 11 165 19 177 7.01e-51 168
MS.gene50014.t1 AT1G62700 53.165 158 65 4 13 163 6 161 8.25e-51 169
MS.gene50014.t1 AT1G62700 53.165 158 65 4 13 163 6 161 8.25e-51 169
MS.gene50014.t1 AT3G15170 51.282 156 68 3 11 158 17 172 1.45e-50 167
MS.gene50014.t1 AT3G04060 54.194 155 62 4 12 158 18 171 1.54e-50 167
MS.gene50014.t1 AT2G18060 51.852 162 68 5 14 167 9 168 3.08e-50 167
MS.gene50014.t1 AT2G18060 51.852 162 68 5 14 167 9 168 3.08e-50 167
MS.gene50014.t1 AT5G18270 52.903 155 64 3 12 158 19 172 4.00e-50 166
MS.gene50014.t1 AT5G66300 51.515 165 68 5 4 159 2 163 5.13e-50 165
MS.gene50014.t1 AT1G01720 52.727 165 65 4 12 166 5 166 6.33e-50 164
MS.gene50014.t1 AT4G27410 45.455 187 77 3 11 174 11 195 8.36e-50 165
MS.gene50014.t1 AT5G18270 52.903 155 64 3 12 158 19 172 8.94e-50 165
MS.gene50014.t1 AT4G36160 48.864 176 79 5 1 167 1 174 1.31e-49 166
MS.gene50014.t1 AT5G62380 53.503 157 60 6 12 159 5 157 1.46e-49 165
MS.gene50014.t1 AT5G62380 53.503 157 60 6 12 159 5 157 1.46e-49 165
MS.gene50014.t1 AT4G36160 51.534 163 68 5 14 167 10 170 1.50e-49 166
MS.gene50014.t1 AT4G36160 51.534 163 68 5 14 167 10 170 1.50e-49 166
MS.gene50014.t1 AT3G17730 50.968 155 66 3 12 158 4 156 2.22e-49 162
MS.gene50014.t1 AT5G46590 51.250 160 64 4 10 158 2 158 3.30e-49 162
MS.gene50014.t1 AT1G52890 51.250 160 70 3 11 164 11 168 7.02e-49 162
MS.gene50014.t1 AT3G29035 48.876 178 79 4 11 180 21 194 8.55e-49 162
MS.gene50014.t1 AT1G71930 51.974 152 64 4 14 158 9 158 1.11e-48 162
MS.gene50014.t1 AT1G71930 51.974 152 64 4 14 158 9 158 1.11e-48 162
MS.gene50014.t1 AT3G12977 50.000 160 71 4 11 163 15 172 1.18e-48 161
MS.gene50014.t1 AT4G35580 47.396 192 83 5 14 197 9 190 1.30e-48 166
MS.gene50014.t1 AT4G35580 47.396 192 83 5 14 197 9 190 1.56e-48 167
MS.gene50014.t1 AT4G35580 47.396 192 83 5 14 197 9 190 1.85e-48 166
MS.gene50014.t1 AT1G79580 50.318 157 69 3 10 159 13 167 2.03e-48 163
MS.gene50014.t1 AT1G79580 50.318 157 69 3 10 159 13 167 2.03e-48 163
MS.gene50014.t1 AT1G79580 50.318 157 69 3 10 159 13 167 2.03e-48 163
MS.gene50014.t1 AT1G79580 50.318 157 69 3 10 159 13 167 2.03e-48 163
MS.gene50014.t1 AT1G79580 50.318 157 69 3 10 159 13 167 2.03e-48 163
MS.gene50014.t1 AT3G61910 45.109 184 76 6 4 165 1 181 2.69e-48 161
MS.gene50014.t1 AT2G46770 46.629 178 71 4 4 159 6 181 4.16e-48 162
MS.gene50014.t1 AT1G33060 52.288 153 63 3 14 158 24 174 6.15e-48 167
MS.gene50014.t1 AT1G33060 52.288 153 63 3 14 158 24 174 6.41e-48 167
MS.gene50014.t1 AT1G32770 46.023 176 74 4 3 159 5 178 7.47e-48 161
MS.gene50014.t1 AT1G52880 49.718 177 73 3 18 178 21 197 9.13e-48 160
MS.gene50014.t1 AT5G63790 51.553 161 64 3 10 159 46 203 1.31e-47 159
MS.gene50014.t1 AT3G10500 42.857 224 107 6 14 222 9 226 1.54e-47 164
MS.gene50014.t1 AT5G63790 51.553 161 64 3 10 159 56 213 1.79e-47 159
MS.gene50014.t1 AT3G10490 50.617 162 69 3 14 166 27 186 2.73e-47 156
MS.gene50014.t1 AT2G33480 52.027 148 66 2 59 203 3 148 2.80e-47 155
MS.gene50014.t1 AT5G08790 53.416 161 59 5 11 159 4 160 3.07e-47 157
MS.gene50014.t1 AT5G04410 52.121 165 65 4 14 168 9 169 3.82e-47 164
MS.gene50014.t1 AT1G56010 47.853 163 73 4 11 163 16 176 4.02e-47 158
MS.gene50014.t1 AT3G15500 50.625 160 71 3 11 164 11 168 4.14e-47 158
MS.gene50014.t1 AT3G10480 51.235 162 68 3 14 166 27 186 4.26e-47 161
MS.gene50014.t1 AT4G17980 47.170 159 74 2 10 158 2 160 1.76e-46 155
MS.gene50014.t1 AT4G17980 47.170 159 74 2 10 158 2 160 2.66e-46 155
MS.gene50014.t1 AT3G10480 50.932 161 69 3 14 166 27 185 6.54e-46 158
MS.gene50014.t1 AT5G46590 50.340 147 63 3 10 149 2 145 7.34e-46 154
MS.gene50014.t1 AT3G10490 50.617 162 69 3 14 166 27 186 1.92e-45 157
MS.gene50014.t1 AT5G39820 43.478 184 77 3 2 158 8 191 1.35e-43 149
MS.gene50014.t1 AT4G28530 46.707 167 69 4 13 160 9 174 1.78e-43 149
MS.gene50014.t1 AT3G10480 42.564 195 68 3 14 166 27 219 3.42e-42 149
MS.gene50014.t1 AT3G49530 39.535 215 113 4 14 220 13 218 3.98e-42 147
MS.gene50014.t1 AT1G26870 39.224 232 118 7 11 220 13 243 4.27e-42 147
MS.gene50014.t1 AT3G49530 39.535 215 113 4 14 220 13 218 7.17e-42 148
MS.gene50014.t1 AT1G34180 48.765 162 71 4 16 168 18 176 1.29e-41 147
MS.gene50014.t1 AT1G34190 49.080 163 69 5 16 168 18 176 1.42e-41 148
MS.gene50014.t1 AT1G32510 39.224 232 115 7 14 222 6 234 1.86e-41 142
MS.gene50014.t1 AT1G34180 46.552 174 69 5 16 168 18 188 3.46e-41 146
MS.gene50014.t1 AT1G34180 48.765 162 71 4 16 168 18 176 4.67e-41 147
MS.gene50014.t1 AT5G24590 45.882 170 73 5 14 169 13 177 1.63e-40 144
MS.gene50014.t1 AT1G34180 46.552 174 69 5 16 168 18 188 1.70e-40 145
MS.gene50014.t1 AT2G17040 48.299 147 70 3 16 158 8 152 1.72e-40 140
MS.gene50014.t1 AT2G02450 42.246 187 93 5 16 198 53 228 6.79e-40 141
MS.gene50014.t1 AT2G02450 42.246 187 93 5 16 198 53 228 9.23e-40 141
MS.gene50014.t1 AT5G64060 44.379 169 80 4 10 168 2 166 1.01e-39 140
MS.gene50014.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.05e-39 142
MS.gene50014.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.05e-39 142
MS.gene50014.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.05e-39 142
MS.gene50014.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.05e-39 142
MS.gene50014.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.05e-39 142
MS.gene50014.t1 AT2G43000 47.134 157 73 5 16 165 20 173 1.57e-39 137
MS.gene50014.t1 AT3G12910 45.963 161 67 5 16 156 23 183 2.53e-39 137
MS.gene50014.t1 AT5G22290 38.798 183 100 4 16 194 23 197 1.14e-37 134
MS.gene50014.t1 AT3G44290 41.212 165 84 4 16 176 16 171 1.17e-36 129
MS.gene50014.t1 AT3G44290 36.364 220 116 6 16 220 16 226 1.24e-36 131
MS.gene50014.t1 AT2G27300 43.836 146 72 3 14 155 14 153 1.61e-36 131
MS.gene50014.t1 AT5G04395 44.138 145 64 2 11 138 25 169 7.61e-35 122
MS.gene50014.t1 AT4G10350 56.842 95 36 2 68 159 22 114 1.27e-33 122
MS.gene50014.t1 AT5G64530 40.244 164 68 4 12 156 1 153 6.87e-33 117
MS.gene50014.t1 AT1G32870 47.674 172 74 6 7 168 5 170 1.57e-32 123
MS.gene50014.t1 AT1G32870 47.674 172 74 6 7 168 5 170 1.70e-32 123
MS.gene50014.t1 AT1G32870 47.674 172 74 6 7 168 41 206 1.87e-32 123
MS.gene50014.t1 AT5G64530 45.736 129 57 3 12 138 1 118 2.43e-32 115
MS.gene50014.t1 AT5G61430 53.774 106 42 3 64 164 6 109 3.27e-32 118
MS.gene50014.t1 AT3G12977 55.000 100 39 3 68 163 22 119 2.11e-30 112
MS.gene50014.t1 AT5G14000 38.365 159 92 4 6 161 7 162 4.73e-30 111
MS.gene50014.t1 AT1G56010 49.524 105 45 2 65 163 7 109 8.95e-30 111
MS.gene50014.t1 AT5G14000 40.136 147 83 3 7 150 8 152 9.45e-30 108
MS.gene50014.t1 AT1G02230 41.718 163 76 7 15 169 4 155 1.69e-29 113
MS.gene50014.t1 AT5G50820 37.173 191 99 7 6 184 8 189 8.82e-29 107
MS.gene50014.t1 AT4G01550 39.869 153 83 5 17 162 7 157 2.30e-28 111
MS.gene50014.t1 AT1G02250 42.105 152 76 5 15 158 4 151 8.08e-27 105
MS.gene50014.t1 AT4G01520 40.252 159 79 7 15 163 5 157 3.77e-26 103
MS.gene50014.t1 AT4G01540 40.764 157 77 7 17 163 7 157 6.42e-26 103
MS.gene50014.t1 AT4G01540 40.764 157 77 7 17 163 7 157 7.11e-26 104
MS.gene50014.t1 AT4G01540 40.764 157 77 7 17 163 7 157 7.57e-26 104
MS.gene50014.t1 AT4G01540 40.764 157 77 7 17 163 7 157 8.31e-26 104
MS.gene50014.t1 AT5G22380 38.462 156 79 5 17 157 8 161 1.01e-24 97.8
MS.gene50014.t1 AT3G44350 37.975 158 83 5 14 158 5 160 2.18e-24 97.1
MS.gene50014.t1 AT3G04420 37.748 151 83 4 15 158 4 150 1.63e-23 96.7
MS.gene50014.t1 AT3G04420 37.748 151 83 4 15 158 4 150 1.73e-23 95.9
MS.gene50014.t1 AT3G44350 39.568 139 73 4 14 143 5 141 1.29e-22 90.5
MS.gene50014.t1 AT2G18060 53.086 81 34 3 89 167 2 80 1.02e-21 90.9
MS.gene50014.t1 AT1G02220 38.125 160 77 7 15 164 4 151 1.05e-21 92.4
MS.gene50014.t1 AT4G28530 39.535 129 59 3 13 122 9 137 1.18e-21 91.3
MS.gene50014.t1 AT3G10490 50.000 86 37 2 85 166 3 86 1.29e-20 89.0
MS.gene50014.t1 AT3G10490 50.000 86 37 2 85 166 3 86 1.29e-20 89.0
MS.gene50014.t1 AT2G43000 48.235 85 38 3 76 156 5 87 2.50e-18 80.1
MS.gene50014.t1 AT3G55210 33.714 175 84 8 14 165 11 176 7.97e-17 77.8
MS.gene50014.t1 AT1G01010 34.810 158 80 7 17 158 6 156 8.95e-17 78.6
MS.gene50014.t1 AT3G56530 33.544 158 88 6 11 157 49 200 1.37e-15 74.7
MS.gene50014.t1 AT5G22290 39.048 105 56 3 90 194 2 98 3.47e-15 72.4
MS.gene50014.t1 AT5G14000 54.545 55 25 0 7 61 8 62 2.07e-13 67.8
MS.gene50014.t1 AT5G41090 27.329 161 95 5 14 159 8 161 2.16e-13 67.0
MS.gene50014.t1 AT4G29230 32.000 175 86 10 12 158 46 215 8.13e-13 67.4
MS.gene50014.t1 AT4G29230 31.034 174 89 9 12 158 45 214 8.44e-13 67.4
MS.gene50014.t1 AT4G29230 31.034 174 89 9 12 158 46 215 9.55e-13 67.0
MS.gene50014.t1 AT1G28470 32.317 164 88 10 14 158 77 236 2.77e-12 65.1
MS.gene50014.t1 AT5G56620 30.573 157 76 7 12 138 41 194 1.40e-11 63.5
MS.gene50014.t1 AT5G56620 30.573 157 76 7 12 138 41 194 1.41e-11 63.5
MS.gene50014.t1 AT5G56620 30.573 157 76 7 12 138 41 194 1.61e-11 63.2
MS.gene50014.t1 AT4G28500 30.055 183 98 10 14 171 59 236 1.62e-11 63.2
MS.gene50014.t1 AT3G04430 33.099 142 78 5 20 146 6 145 3.78e-11 60.8

Find 50 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAATCCCATCCTCTTT+TGG 0.230199 6.2:-77067669 MS.gene50014:CDS
CCAAGCAATGACAGCAGTTT+TGG 0.265671 6.2:-77067792 MS.gene50014:CDS
CTCTTAGATCGGTTCCCATT+TGG 0.336362 6.2:+77068183 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.339051 6.2:-77068161 MS.gene50014:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 6.2:-77068452 MS.gene50014:CDS
AGAGGATGGGATTGAGGAGG+AGG 0.387672 6.2:+77067674 None:intergenic
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6.2:-77068451 MS.gene50014:CDS
TCGGTTCCCATTTGGATACT+TGG 0.402648 6.2:+77068191 None:intergenic
TCAAAGACTCATGAAGTTGT+TGG 0.413398 6.2:-77068105 MS.gene50014:CDS
CTTCATCTGTTGGATGAAAA+CGG 0.429980 6.2:+77068547 None:intergenic
GGATGGGATTGAGGAGGAGG+AGG 0.435232 6.2:+77067677 None:intergenic
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6.2:-77068198 MS.gene50014:CDS
ATGCATGATCCAATCAGTTC+TGG 0.442153 6.2:+77068035 None:intergenic
CCAAAACTGCTGTCATTGCT+TGG 0.451138 6.2:+77067792 None:intergenic
TTCAACTTCAAGTTCAAAAG+TGG 0.453095 6.2:-77067748 MS.gene50014:CDS
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6.2:-77068150 MS.gene50014:CDS
TTACTGGAAAGCAACTGGTT+TGG 0.462280 6.2:-77068145 MS.gene50014:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 6.2:+77068537 None:intergenic
GACTTGCAAAGATCAACTTC+AGG 0.465462 6.2:+77068462 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.467797 6.2:+77067996 None:intergenic
TCCAAAAGAGGATGGGATTG+AGG 0.467952 6.2:+77067668 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 6.2:+77068470 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.471467 6.2:-77067998 MS.gene50014:intron
GAATGATGGAAGCAGGTAAA+GGG 0.510410 6.2:+77068484 None:intergenic
CTCATGGTTCCAGAACTGAT+TGG 0.514422 6.2:-77068044 MS.gene50014:CDS
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 6.2:+77068004 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.519212 6.2:+77067660 None:intergenic
AATGGAGAGGAGACAGTGAA+AGG 0.524667 6.2:-77067822 MS.gene50014:CDS
GTATTAAGCATTTCCAAAAG+AGG 0.532359 6.2:+77067656 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 6.2:+77068483 None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG 0.533996 6.2:+77067661 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 6.2:+77068477 None:intergenic
AGTTTGTAGCTCTCTTAGAT+CGG 0.542330 6.2:+77068172 None:intergenic
TCTAAGAGAGCTACAAACTC+TGG 0.543930 6.2:-77068168 MS.gene50014:CDS
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6.2:-77068197 MS.gene50014:CDS
TAGGTGATATGGAACAAGAT+AGG 0.546204 6.2:-77068236 MS.gene50014:CDS
TGTTCAATACTTGAAGCGTA+AGG 0.550952 6.2:-77068517 MS.gene50014:CDS
AGAAAGACAGACCAAGGGGT+TGG 0.554284 6.2:+77067987 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 6.2:-77068441 MS.gene50014:intron
TGTGTCGCATATTTCTGAAG+AGG 0.578122 6.2:-77067860 MS.gene50014:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 6.2:-77068060 MS.gene50014:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.611502 6.2:-77067855 MS.gene50014:CDS
TACATACCAGGTAAATCCCA+AGG 0.614952 6.2:+77068435 None:intergenic
GTTGGATGAAAACGGAAACC+TGG 0.621096 6.2:+77068555 None:intergenic
GGTGAAGTGAGATTGCCACC+AGG 0.631641 6.2:-77068573 MS.gene50014:CDS
TCAGTTCTGGAACCATGAGG+TGG 0.656678 6.2:+77068048 None:intergenic
AAAAGAGGATGGGATTGAGG+AGG 0.660083 6.2:+77067671 None:intergenic
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 6.2:-77067852 MS.gene50014:CDS
CAATCAGTTCTGGAACCATG+AGG 0.718936 6.2:+77068045 None:intergenic
GGATGAAAACGGAAACCTGG+TGG 0.761895 6.2:+77068558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAGAAAAGAAAAGAAA+AGG + chr6.2:77067850-77067869 None:intergenic 20.0%
!!! AGTTTAGTCTTGTAATTTAA+AGG - chr6.2:77068320-77068339 MS.gene50014:intron 20.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6.2:77067665-77067684 MS.gene50014:CDS 25.0%
TAGTAGAAGTTATCATGTTC+CGG + chr6.2:77067954-77067973 None:intergenic 30.0%
! GGTTTTGCAGAATGAAAATT+GGG - chr6.2:77068373-77068392 MS.gene50014:intron 30.0%
! TTCAACTTCAAGTTCAAAAG+TGG - chr6.2:77068511-77068530 MS.gene50014:CDS 30.0%
!! GGTTGTTTTCTATGATTTCT+TGG - chr6.2:77068532-77068551 MS.gene50014:CDS 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6.2:77068012-77068031 MS.gene50014:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6.2:77068184-77068203 MS.gene50014:CDS 30.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6.2:77068061-77068080 MS.gene50014:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6.2:77068062-77068081 MS.gene50014:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr6.2:77067792-77067811 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6.2:77068601-77068620 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6.2:77067725-77067744 None:intergenic 35.0%
AGTTTGTAGCTCTCTTAGAT+CGG + chr6.2:77068090-77068109 None:intergenic 35.0%
ATTCAAAGAAAGACAGACCA+AGG + chr6.2:77068281-77068300 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG + chr6.2:77067715-77067734 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6.2:77068602-77068621 None:intergenic 35.0%
TAGGTGATATGGAACAAGAT+AGG - chr6.2:77068023-77068042 MS.gene50014:CDS 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6.2:77068154-77068173 MS.gene50014:CDS 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr6.2:77067742-77067761 MS.gene50014:CDS 35.0%
TTCAAAGAAAGACAGACCAA+GGG + chr6.2:77068280-77068299 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG + chr6.2:77067839-77067858 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG - chr6.2:77068372-77068391 MS.gene50014:intron 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6.2:77068004-77068023 MS.gene50014:CDS 35.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6.2:77067807-77067826 MS.gene50014:CDS 40.0%
ATGCATGATCCAATCAGTTC+TGG + chr6.2:77068227-77068246 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6.2:77067974-77067993 MS.gene50014:intron 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr6.2:77067800-77067819 None:intergenic 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6.2:77067827-77067846 None:intergenic 40.0%
TCAAAGAAAGACAGACCAAG+GGG + chr6.2:77068279-77068298 None:intergenic 40.0%
TCTAAGAGAGCTACAAACTC+TGG - chr6.2:77068091-77068110 MS.gene50014:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6.2:77067808-77067827 MS.gene50014:CDS 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6.2:77068114-77068133 MS.gene50014:CDS 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG - chr6.2:77068407-77068426 MS.gene50014:intron 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr6.2:77067778-77067797 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6.2:77068399-77068418 MS.gene50014:intron 40.0%
AAAAGAGGATGGGATTGAGG+AGG + chr6.2:77068591-77068610 None:intergenic 45.0%
AATGGAGAGGAGACAGTGAA+AGG - chr6.2:77068437-77068456 MS.gene50014:intron 45.0%
ACACTGACACATTCAGACAC+CGG - chr6.2:77067932-77067951 MS.gene50014:intron 45.0%
CCAAAACTGCTGTCATTGCT+TGG + chr6.2:77068470-77068489 None:intergenic 45.0%
CTCATGGTTCCAGAACTGAT+TGG - chr6.2:77068215-77068234 MS.gene50014:CDS 45.0%
GAGCTACAAACTCTGGTTAC+TGG - chr6.2:77068098-77068117 MS.gene50014:CDS 45.0%
GTTGGATGAAAACGGAAACC+TGG + chr6.2:77067707-77067726 None:intergenic 45.0%
TCCAAAAGAGGATGGGATTG+AGG + chr6.2:77068594-77068613 None:intergenic 45.0%
TCGGTTCCCATTTGGATACT+TGG + chr6.2:77068071-77068090 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6.2:77067818-77067837 MS.gene50014:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6.2:77068109-77068128 MS.gene50014:CDS 45.0%
TGAAGCACAGACACAGACAT+CGG - chr6.2:77067898-77067917 MS.gene50014:intron 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr6.2:77067785-77067804 None:intergenic 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG - chr6.2:77068419-77068438 MS.gene50014:intron 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG - chr6.2:77068424-77068443 MS.gene50014:intron 45.0%
! CCAAGCAATGACAGCAGTTT+TGG - chr6.2:77068467-77068486 MS.gene50014:CDS 45.0%
! CGCATATTTCTGAAGAGGAG+AGG - chr6.2:77068404-77068423 MS.gene50014:intron 45.0%
! CTCTTAGATCGGTTCCCATT+TGG + chr6.2:77068079-77068098 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr6.2:77067779-77067798 None:intergenic 45.0%
! TCCTCAATCCCATCCTCTTT+TGG - chr6.2:77068590-77068609 MS.gene50014:CDS 45.0%
!! CAATCAGTTCTGGAACCATG+AGG + chr6.2:77068217-77068236 None:intergenic 45.0%
!! CAATGACAGCAGTTTTGGTG+AGG - chr6.2:77068472-77068491 MS.gene50014:CDS 45.0%
!! AATATTAATATGAATAAATT+GGG - chr6.2:77068352-77068371 MS.gene50014:intron 5.0%
!! TAATATTAATATGAATAAAT+TGG - chr6.2:77068351-77068370 MS.gene50014:intron 5.0%
AGAAAGACAGACCAAGGGGT+TGG + chr6.2:77068275-77068294 None:intergenic 50.0%
CACAGACATCGGACACAACA+TGG - chr6.2:77067909-77067928 MS.gene50014:intron 50.0%
GGATGAAAACGGAAACCTGG+TGG + chr6.2:77067704-77067723 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG - chr6.2:77068199-77068218 MS.gene50014:CDS 50.0%
!! TCAGTTCTGGAACCATGAGG+TGG + chr6.2:77068214-77068233 None:intergenic 50.0%
AGAGGATGGGATTGAGGAGG+AGG + chr6.2:77068588-77068607 None:intergenic 55.0%
GGTGAAGTGAGATTGCCACC+AGG - chr6.2:77067686-77067705 MS.gene50014:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6.2:77068258-77068277 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6.2:77068261-77068280 MS.gene50014:intron 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6.2:77068266-77068285 None:intergenic 60.0%
GGATGGGATTGAGGAGGAGG+AGG + chr6.2:77068585-77068604 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 77067659 77068622 77067659 ID=MS.gene50014
chr6.2 mRNA 77067659 77068622 77067659 ID=MS.gene50014.t1;Parent=MS.gene50014
chr6.2 exon 77068442 77068622 77068442 ID=MS.gene50014.t1.exon1;Parent=MS.gene50014.t1
chr6.2 CDS 77068442 77068622 77068442 ID=cds.MS.gene50014.t1;Parent=MS.gene50014.t1
chr6.2 exon 77067999 77068255 77067999 ID=MS.gene50014.t1.exon2;Parent=MS.gene50014.t1
chr6.2 CDS 77067999 77068255 77067999 ID=cds.MS.gene50014.t1;Parent=MS.gene50014.t1
chr6.2 exon 77067659 77067898 77067659 ID=MS.gene50014.t1.exon3;Parent=MS.gene50014.t1
chr6.2 CDS 77067659 77067898 77067659 ID=cds.MS.gene50014.t1;Parent=MS.gene50014.t1
Gene Sequence

>MS.gene50014

ATGGAGAAGATGAATTTTGTGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTACCTTTTCTTTTCTTTTCTTTTCTTTTTCGTTCGTTTATAATCATAACTTAATGAAGCACAGACACAGACATCGGACACAACATGGACACTGACACATTCAGACACCGGAACATGATAACTTCTACTACTACTGCAAACAATGTCATGTGGATTGATTTGAGTGTGTGTTGTTCTTTTAGGTGATATGGAACAAGATAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCGATCTAAGAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCCAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCTGTCTTTCTTTGAATATGTACATTTGTAATTAAGAGTTTAGTCTTGTAATTTAAAGGTGTTGAATTAATATTAATATGAATAAATTGGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGACAGTGAAAGGAGTGAAGCCAAGCAATGACAGCAGTTTTGGTGAGGTGAAGAAGAACTCAGCTTCAACTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTGGCAGAGAAGAAGAAAAATTCTGATGCATCCTCCTCCTCCTCAATCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene50014.t1

MEKMNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQDRYFFSTKEAKYPNGNRSKRATNSGYWKATGLDKQIMNSKTHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEETVKGVKPSNDSSFGEVKKNSASTSSSKVVVFYDFLAEKKKNSDASSSSSIPSSFGNA