AlfalfaGEDB | MS.gene50019

M. sativa cultivar XinJiangDaYe / MS.gene50019

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50019.t1	XP_013450231.1	93.5	168	11	0	1	168	1	168	4.20E-80	307.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50019.t1	Q7XJK8	36.7	109	69	0	6	114	2	110	1.5e-14	80.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50019.t1	A0A072U3F6	93.5	168	11	0	1	168	1	168	3.0e-80	307.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene50019.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50019.t1	MTR_7g106510	93.865	163	10	0	1	163	1	163	1.82e-107	316
MS.gene50019.t1	MTR_4g019670	90.798	163	15	0	1	163	1	163	6.11e-107	315
MS.gene50019.t1	MTR_3g093900	60.843	166	65	0	1	166	1	166	2.90e-66	212
MS.gene50019.t1	MTR_8g467500	61.486	148	53	1	13	160	13	156	2.48e-52	168
MS.gene50019.t1	MTR_3g466980	31.515	165	109	2	1	164	1	162	1.56e-23	92.4
MS.gene50019.t1	MTR_8g036130	35.878	131	82	1	4	132	1	131	3.53e-22	89.7
MS.gene50019.t1	MTR_5g075380	33.758	157	102	2	7	162	4	159	4.68e-22	87.4
MS.gene50019.t1	MTR_4g032620	33.607	122	81	0	6	127	3	124	3.51e-21	86.7
MS.gene50019.t1	MTR_4g031910	40.152	132	76	1	1	132	1	129	1.00e-20	85.5
MS.gene50019.t1	MTR_3g466830	32.000	150	101	1	6	154	2	151	4.90e-19	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50019.t1	AT1G65300	36.697	109	69	0	6	114	2	110	1.40e-19	83.2
MS.gene50019.t1	AT2G40210	31.169	154	102	2	1	154	1	150	1.04e-16	76.6
MS.gene50019.t1	AT3G05860	29.927	137	92	2	1	136	1	134	1.72e-16	73.9
MS.gene50019.t1	AT3G05860	30.303	132	88	2	1	131	1	129	6.00e-16	73.2
MS.gene50019.t1	AT3G05860	30.303	132	88	2	1	131	1	129	8.39e-16	72.8
MS.gene50019.t1	AT5G06500	30.137	146	101	1	4	149	1	145	1.61e-15	72.0
MS.gene50019.t1	AT1G65330	32.110	109	74	0	6	114	2	110	3.49e-14	68.6
MS.gene50019.t1	AT1G31630	32.174	115	77	1	6	120	2	115	4.20e-14	68.9
MS.gene50019.t1	AT5G48670	34.188	117	77	0	6	122	3	119	6.26e-14	68.6
MS.gene50019.t1	AT2G15660	29.870	154	91	5	5	154	3	143	7.53e-14	67.4

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Find 27 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATGGCCATCTCCTATGG+TGG	0.643804	6.2:+77203883	MS.gene50019:CDS
AGAAAACGAAGAGACTTTAA+TGG	0.340960	6.2:+77204033	MS.gene50019:CDS
AGATCACTAGGAAGATGTCT+AGG	0.577538	6.2:+77204155	MS.gene50019:CDS
AGGCTTGTGTGGTTGTGTTT+GGG	0.371274	6.2:+77203840	MS.gene50019:CDS
AGTATTATTCTCAATCAATT+TGG	0.203967	6.2:-77203738	None:intergenic
ATAGGAGATGGCCATATTGA+TGG	0.402716	6.2:-77203878	None:intergenic
ATCAATATGGCCATCTCCTA+TGG	0.431669	6.2:+77203880	MS.gene50019:CDS
ATGCATCAAATTGAAAACGA+AGG	0.641960	6.2:+77204064	MS.gene50019:CDS
ATGCGGTATTGAGGCTTGTG+TGG	0.625075	6.2:+77203829	MS.gene50019:CDS
ATTAGGTCTTCAGCCACCAT+AGG	0.553253	6.2:-77203896	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAACGAAGAGACTTTAA+TGG	+	chr6.2:77204033-77204052	MS.gene50019:CDS	30.0%
ATGCATCAAATTGAAAACGA+AGG	+	chr6.2:77204064-77204083	MS.gene50019:CDS	30.0%
CAAGTTTGAGTCAATATCAT+TGG	+	chr6.2:77203922-77203941	MS.gene50019:CDS	30.0%
GAAAACGAAGAGACTTTAAT+GGG	+	chr6.2:77204034-77204053	MS.gene50019:CDS	30.0%
GCTATAAGAGAAGATTGAAA+GGG	+	chr6.2:77203774-77203793	MS.gene50019:CDS	30.0%
GTGATACAAAACCATCAATA+TGG	+	chr6.2:77203867-77203886	MS.gene50019:CDS	30.0%
TATCCTCCAAAAAAGTCAAT+TGG	-	chr6.2:77203973-77203992	None:intergenic	30.0%
TGAGAATAATACTCGAAGAA+AGG	+	chr6.2:77203748-77203767	MS.gene50019:CDS	30.0%
TGCTATAAGAGAAGATTGAA+AGG	+	chr6.2:77203773-77203792	MS.gene50019:CDS	30.0%
TTGACTCAAACTTGGTTATT+AGG	-	chr6.2:77203916-77203935	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	77203707	77204213	77203707	ID=MS.gene50019
chr6.2	mRNA	77203707	77204213	77203707	ID=MS.gene50019.t1;Parent=MS.gene50019
chr6.2	exon	77203707	77204213	77203707	ID=MS.gene50019.t1.exon1;Parent=MS.gene50019.t1
chr6.2	CDS	77203707	77204213	77203707	ID=cds.MS.gene50019.t1;Parent=MS.gene50019.t1

Gene Sequence

>MS.gene50019

ATGACAAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCGAAGAAAGGCGTGCTATAAGAGAAGATTGAAAGGGTTGTTCACCAAAATGGAGCATGTGACAATCTTATGCGGTATTGAGGCTTGTGTGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTATGGTGGCTGAAGACCTAATAACCAAGTTTGAGTCAATATCATTGGATGTGCAGTCGAAAAATAAGACTGACCAATTGACTTTTTTGGAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGAAAAGATCAAAAAAGAAAACGAAGAGACTTTAATGGGAGTTTATATGCATCAAATTGAAAACGAAGGTAAATCTTTAGATGATTTTGACCATGATGTGCAGAATCGCTTGATTGCTTTTACTCTTGAAAAAATTAAGATCACTAGGAAGATGTCTAGGCATTTAGAAAAGGAGATTTTGCCTCTTGAAAATTAA

Protein sequence

>MS.gene50019.t1

MTRIRKKKITSKLIENNTRRKACYKRRLKGLFTKMEHVTILCGIEACVVVFGPGDTKPSIWPSPMVAEDLITKFESISLDVQSKNKTDQLTFLEDKGKKLEASLEKIKKENEETLMGVYMHQIENEGKSLDDFDHDVQNRLIAFTLEKIKITRKMSRHLEKEILPLEN