AlfalfaGEDB | MS.gene50087

M. sativa cultivar XinJiangDaYe / MS.gene50087

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50087.t1	RHN76309.1	94.4	72	4	0	80	151	88	159	3.20E-31	144.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50087.t1	C0LGG6	65.3	72	24	1	80	151	571	641	1.3e-20	100.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50087.t1	G7IHW2	94.4	72	4	0	80	151	553	624	2.3e-31	144.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50087.t1	MTR_2g100470	94.444	72	4	0	80	151	553	624	7.53e-41	145
MS.gene50087.t1	MTR_2g100450	88.889	72	8	0	80	151	370	441	8.65e-39	139
MS.gene50087.t1	MTR_2g100450	88.889	72	8	0	80	151	575	646	2.04e-38	138
MS.gene50087.t1	MTR_2g100450	88.889	72	8	0	80	151	575	646	2.49e-38	137
MS.gene50087.t1	MTR_8g015340	63.889	72	25	1	80	151	599	669	4.20e-22	91.7
MS.gene50087.t1	MTR_8g014730	54.167	72	33	0	80	151	566	637	1.51e-20	87.4
MS.gene50087.t1	MTR_8g014930	55.556	72	32	0	80	151	571	642	1.88e-20	87.0
MS.gene50087.t1	MTR_8g014970	42.718	103	55	1	53	151	301	403	1.99e-20	87.0
MS.gene50087.t1	MTR_8g014930	55.556	72	32	0	80	151	566	637	2.06e-20	87.0
MS.gene50087.t1	MTR_8g015040	55.556	72	32	0	80	151	618	689	5.24e-20	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50087.t1	AT1G51890	65.278	72	24	1	80	151	299	369	2.89e-25	100
MS.gene50087.t1	AT1G51890	65.278	72	24	1	80	151	507	577	3.25e-25	100
MS.gene50087.t1	AT1G51890	65.278	72	24	1	80	151	571	641	3.75e-25	100
MS.gene50087.t1	AT1G51890	65.278	72	24	1	80	151	571	641	3.88e-25	100
MS.gene50087.t1	AT1G51890	65.278	72	24	1	80	151	571	641	3.93e-25	100
MS.gene50087.t1	AT1G51880	53.684	95	36	3	64	151	562	655	5.43e-24	97.1
MS.gene50087.t1	AT1G51880	63.889	72	25	1	80	151	593	663	5.93e-24	97.1
MS.gene50087.t1	AT1G51880	63.889	72	25	1	80	151	567	637	6.39e-24	97.1
MS.gene50087.t1	AT1G51860	63.889	72	25	1	80	151	441	511	8.46e-24	96.7
MS.gene50087.t1	AT1G51860	63.889	72	25	1	80	151	585	655	1.05e-23	96.3

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Find 35 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCAGCTATGTTGGTA+CGG	0.585202	4.3:-90149914	MS.gene50087:CDS
AAATACTTGACAGGTCTTAT+AGG	0.242464	4.3:-90148074	MS.gene50087:CDS
AAGTAAGACACTGGAGTACA+AGG	0.521279	4.3:+90149949	None:intergenic
AATACTTGACAGGTCTTATA+GGG	0.376188	4.3:-90148073	MS.gene50087:CDS
ACTCTAGATTAGAGCCATGT+TGG	0.527280	4.3:+90148034	None:intergenic
ACTTACAAGTATATGATCCT+TGG	0.514030	4.3:+90149886	None:intergenic
ATATCTGCAATTTCAAGCAG+AGG	0.641697	4.3:-90148238	MS.gene50087:intron
ATATTCTATTGACTTCAGAT+TGG	0.437899	4.3:+90149756	None:intergenic
ATGTTGGTACGGATTCGCCA+AGG	0.677061	4.3:-90149903	MS.gene50087:CDS
CAGAAACTTTGAAAAGGTTG+TGG	0.430911	4.3:-90148352	MS.gene50087:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTACAAGTATATGATCCT+TGG	+	chr4.3:90148131-90148150	None:intergenic	30.0%
ATCTTCATCTAAGTTATCCT+AGG	-	chr4.3:90148441-90148460	MS.gene50087:intron	30.0%
ATGAACTACAGCAAAAAGTT+TGG	+	chr4.3:90149917-90149936	None:intergenic	30.0%
ATTCATGCAACAAGAGAAAT+GGG	-	chr4.3:90149253-90149272	MS.gene50087:intron	30.0%
ATTTACTGAAGAAACTTGGA+AGG	-	chr4.3:90148556-90148575	MS.gene50087:intron	30.0%
GTTCATCATAAATACTTGAC+AGG	-	chr4.3:90149931-90149950	MS.gene50087:CDS	30.0%
TAATTGGAACTATAGCTTCT+GGG	-	chr4.3:90148231-90148250	MS.gene50087:intron	30.0%
TTAATTGGAACTATAGCTTC+TGG	-	chr4.3:90148230-90148249	MS.gene50087:intron	30.0%
TTGTCGAATAACAATTTGAC+TGG	-	chr4.3:90148362-90148381	MS.gene50087:intron	30.0%
ACTAACACATCACGTACAAA+AGG	+	chr4.3:90149116-90149135	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	90148037	90149999	90148037	ID=MS.gene50087
chr4.3	mRNA	90148037	90149999	90148037	ID=MS.gene50087.t1;Parent=MS.gene50087
chr4.3	exon	90149892	90149999	90149892	ID=MS.gene50087.t1.exon1;Parent=MS.gene50087.t1
chr4.3	CDS	90149892	90149999	90149892	ID=cds.MS.gene50087.t1;Parent=MS.gene50087.t1
chr4.3	exon	90149754	90149810	90149754	ID=MS.gene50087.t1.exon2;Parent=MS.gene50087.t1
chr4.3	CDS	90149754	90149810	90149754	ID=cds.MS.gene50087.t1;Parent=MS.gene50087.t1
chr4.3	exon	90149607	90149677	90149607	ID=MS.gene50087.t1.exon3;Parent=MS.gene50087.t1
chr4.3	CDS	90149607	90149677	90149607	ID=cds.MS.gene50087.t1;Parent=MS.gene50087.t1
chr4.3	exon	90148239	90148371	90148239	ID=MS.gene50087.t1.exon4;Parent=MS.gene50087.t1
chr4.3	CDS	90148239	90148371	90148239	ID=cds.MS.gene50087.t1;Parent=MS.gene50087.t1
chr4.3	exon	90148037	90148123	90148037	ID=MS.gene50087.t1.exon5;Parent=MS.gene50087.t1
chr4.3	CDS	90148037	90148123	90148037	ID=cds.MS.gene50087.t1;Parent=MS.gene50087.t1

Gene Sequence

>MS.gene50087

ATGGGATCAAGAGAAACTGGCAGGAGATCCTTGTACTCCAGTGTCTTACTTGTGGAATGGCCTAAACTGCAGCTATGTTGGTACGGATTCGCCAAGGATCATATACTTGTAAGTTATGTGGCATGAAATGAAATGCATACGCCGATGATAATCCTTCAGGAACTATAGCTTCTGGAACTTAACTTCCAGCGGTTTAATTGGAACTATAGCTTCTGGGATATCCAATCTGAAGTCAATAGAATATTTGTAAGTTCTTGAATCTATTATGTACACGAAAAACAAATAGCAAGCTAATAAGTTGATCACAAAATAGAATGTTAAGGTTTTGTCGAATAACAATTTGACTGGTGCTGTGCCTGATTTCCTATCTCAGCTACGCTTCTTGAGAGTTCTGTAAGTCAACTATCTTCATCTAAGTTATCCTAGGCTGACTTGATTATTCAATTAATTATATTGCTTGAGGTGCTCAAAATATATTCTTGTCGAGAATGAAAGCATGTAAAGAGTAATTACTTTTTTATTTACTGAAGAAACTTGGAAGGAAATCAGCTATCAGCAGGGGCGAATCCCTTCATAACAATGGGGTAGCATTGGCTACCCCAAAAGAAAAATAAACCTTGCATAATTTGTATAGTTTTAAAATATAGCTACCCCATTAATATATTACTTGGCTACTCTAAACAATTTTGTTGGTTTAAAGAGAGATTATTTAAAGAAAATACTTATAATCTATTTAGTTTAGTGTCAATTATAAATAAATTTGACTTGTTAAAACTTCATAGAGTACAAATTTTATAAATAATTATTGTTAGATTTTATTTTCTTCGTTGTCGCTTCATTAAATATAAGGAAAATTTATTGCAAACTTATTTTACTTATTAATTAAGTTTAATATATTAATTTTTAAAATATATTTTATTTCTTCTTTATATTTGGCCCCCTCGTAAAAATTGTATTAGCTTCGCCGCTGGCTATCAGGATCAATTCCAATACAACTCCTTGTGCGTTCAAAGAATAGTATGCTCGAATCCAAGTATGTTCTATTTAAAGTTTTACTTTTACATATTTTATGACTTCCTTTTGTACGTGATGTGTTAGTGATTTATCTCATTTATATATCAAAAATGTATGGTGTCAGACTATGTCAAATAAATAACATGATTATATATTACTGTATGTGCAAGTTTTGGTAGAAATTCAAATCTTTGCACCTCAGATTCATGCAACAAGAGAAATGGGAGTAAGGTTTTAGTTCCATTAGTAGTATCAGTTGGTGGAGCTTTCATTATACTAGTAGTAGCAATGATTTCTTTTCGCATATACTACAAGAGACACCAAGGTAGGTTTGGCTTTCTATTCCATTGACATTGGTAGGAGCCGAACAATAGAATAAAAATAGATGATTTAATTGGGTATGCAATTTAAATGTAAAAATAATTTACACTGTCGCCTAATTACACATCATCATCTTAAGTGTGATTTTTAAGATAATCAGGATCGAAGTTAACATTATTTTTAATAATTTGACAATTTATGATCGGTAAATTGGTTGACTACACTCAACGTGTATAAAAATTAGAGTCAAAGAAACAAGAATTCAGCTATGAAGAAGTGTTAAACATTACCAGAAACTTTGAAAAGGTTGTGGAGAAAGGAGCATCTGGAACAGTCTACCATGGCTGGATTGATCATGATACTGAGGTAGCTGTCAAAATGCTATCTTCCTCATCAACTCAAGGATATCTGCAATTTCAAGCAGAGGTAGTATCATGAATTAATTAATTTTCAAATTTTATCATGTTTATTCGCACATATTATAGCTTCAACGATGTTCTTGTGAACTGAAGGAATTATGGTTTTCCTTTCTGATTCACAGGCCAAACTTTTTGCTGTAGTTCATCATAAATACTTGACAGGTCTTATAGGGTATTGTGATGATGGCACCAACATGGCTCTAATCTAG

Protein sequence

>MS.gene50087.t1

MGSRETGRRSLYSSVLLVEWPKLQLCWYGFAKDHILRFNWNYSFWDIQSEVNRIFVLSNNNLTGAVPDFLSQLRFLRVLNFEKVVEKGASGTVYHGWIDHDTEVAVKMLSSSSTQGYLQFQAEAKLFAVVHHKYLTGLIGYCDDGTNMALI