Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50140.t1 | XP_003616452.1 | 96.4 | 192 | 6 | 1 | 1 | 191 | 1 | 192 | 6.40E-101 | 376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50140.t1 | Q9LHS8 | 51.3 | 189 | 73 | 4 | 1 | 187 | 1 | 172 | 4.0e-43 | 176.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50140.t1 | G7KGT3 | 96.4 | 192 | 6 | 1 | 1 | 191 | 1 | 192 | 4.6e-101 | 376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene50140.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50140.t1 | MTR_5g080470 | 96.354 | 192 | 6 | 1 | 1 | 191 | 1 | 192 | 2.64e-138 | 384 |
| MS.gene50140.t1 | MTR_7g096610 | 62.500 | 120 | 45 | 0 | 1 | 120 | 2 | 121 | 2.42e-52 | 167 |
| MS.gene50140.t1 | MTR_1g070205 | 69.608 | 102 | 31 | 0 | 8 | 109 | 13 | 114 | 1.68e-49 | 160 |
| MS.gene50140.t1 | MTR_7g096530 | 64.000 | 100 | 36 | 0 | 2 | 101 | 9 | 108 | 2.00e-45 | 149 |
| MS.gene50140.t1 | MTR_6g027710 | 53.782 | 119 | 55 | 0 | 6 | 124 | 39 | 157 | 1.84e-44 | 147 |
| MS.gene50140.t1 | MTR_8g036105 | 59.434 | 106 | 43 | 0 | 5 | 110 | 16 | 121 | 7.14e-44 | 145 |
| MS.gene50140.t1 | MTR_8g036085 | 62.264 | 106 | 40 | 0 | 8 | 113 | 24 | 129 | 8.16e-44 | 146 |
| MS.gene50140.t1 | MTR_1g070220 | 48.611 | 144 | 61 | 2 | 5 | 148 | 13 | 143 | 2.06e-42 | 141 |
| MS.gene50140.t1 | MTR_7g074990 | 64.646 | 99 | 35 | 0 | 8 | 106 | 21 | 119 | 1.36e-41 | 140 |
| MS.gene50140.t1 | MTR_7g075230 | 41.053 | 190 | 92 | 5 | 5 | 177 | 10 | 196 | 1.57e-39 | 134 |
| MS.gene50140.t1 | MTR_7g033800 | 55.670 | 97 | 42 | 1 | 6 | 102 | 10 | 105 | 4.72e-34 | 119 |
| MS.gene50140.t1 | MTR_3g071590 | 54.082 | 98 | 44 | 1 | 6 | 103 | 7 | 103 | 1.95e-33 | 117 |
| MS.gene50140.t1 | MTR_5g083230 | 38.824 | 170 | 77 | 4 | 3 | 167 | 2 | 149 | 2.34e-33 | 117 |
| MS.gene50140.t1 | MTR_6g027700 | 37.572 | 173 | 89 | 2 | 1 | 171 | 1 | 156 | 6.92e-33 | 117 |
| MS.gene50140.t1 | MTR_4g105170 | 47.368 | 114 | 59 | 1 | 4 | 117 | 8 | 120 | 8.11e-33 | 116 |
| MS.gene50140.t1 | MTR_3g031660 | 47.934 | 121 | 56 | 3 | 3 | 117 | 2 | 121 | 3.98e-32 | 114 |
| MS.gene50140.t1 | MTR_6g005070 | 52.577 | 97 | 45 | 1 | 6 | 102 | 8 | 103 | 4.70e-32 | 113 |
| MS.gene50140.t1 | MTR_3g077240 | 51.485 | 101 | 48 | 1 | 2 | 102 | 5 | 104 | 5.63e-32 | 114 |
| MS.gene50140.t1 | MTR_4g083680 | 50.495 | 101 | 49 | 1 | 3 | 103 | 11 | 110 | 8.59e-32 | 113 |
| MS.gene50140.t1 | MTR_2g068760 | 53.535 | 99 | 45 | 1 | 3 | 101 | 9 | 106 | 1.33e-31 | 112 |
| MS.gene50140.t1 | MTR_6g005080 | 51.546 | 97 | 46 | 1 | 6 | 102 | 9 | 104 | 1.48e-30 | 109 |
| MS.gene50140.t1 | MTR_5g083010 | 44.340 | 106 | 58 | 1 | 5 | 110 | 9 | 113 | 2.44e-30 | 109 |
| MS.gene50140.t1 | MTR_5g017950 | 52.577 | 97 | 45 | 1 | 6 | 102 | 7 | 102 | 2.57e-30 | 113 |
| MS.gene50140.t1 | MTR_3g452660 | 36.686 | 169 | 89 | 5 | 1 | 160 | 1 | 160 | 2.93e-30 | 112 |
| MS.gene50140.t1 | MTR_5g083960 | 50.505 | 99 | 48 | 1 | 6 | 104 | 38 | 135 | 3.03e-30 | 110 |
| MS.gene50140.t1 | MTR_3g073690 | 46.667 | 105 | 55 | 1 | 5 | 109 | 7 | 110 | 3.03e-30 | 110 |
| MS.gene50140.t1 | MTR_3g094690 | 51.515 | 99 | 47 | 1 | 6 | 104 | 46 | 143 | 3.17e-30 | 111 |
| MS.gene50140.t1 | MTR_3g071420 | 47.959 | 98 | 50 | 1 | 6 | 103 | 13 | 109 | 5.99e-30 | 108 |
| MS.gene50140.t1 | MTR_3g094690 | 51.515 | 99 | 46 | 2 | 6 | 104 | 46 | 142 | 1.76e-28 | 106 |
| MS.gene50140.t1 | MTR_2g093310 | 47.917 | 96 | 49 | 1 | 6 | 101 | 32 | 126 | 1.26e-27 | 103 |
| MS.gene50140.t1 | MTR_4g060950 | 46.018 | 113 | 52 | 3 | 6 | 117 | 23 | 127 | 2.38e-27 | 102 |
| MS.gene50140.t1 | MTR_5g075020 | 53.659 | 82 | 37 | 1 | 6 | 87 | 42 | 122 | 2.01e-25 | 98.6 |
| MS.gene50140.t1 | MTR_5g075020 | 53.659 | 82 | 37 | 1 | 6 | 87 | 46 | 126 | 2.33e-25 | 98.6 |
| MS.gene50140.t1 | MTR_1g095850 | 46.809 | 94 | 49 | 1 | 8 | 101 | 73 | 165 | 3.17e-25 | 98.2 |
| MS.gene50140.t1 | MTR_8g040900 | 50.575 | 87 | 42 | 1 | 1 | 87 | 1 | 86 | 8.22e-25 | 97.1 |
| MS.gene50140.t1 | MTR_7g028905 | 42.308 | 104 | 59 | 1 | 6 | 109 | 4 | 106 | 6.05e-24 | 91.7 |
| MS.gene50140.t1 | MTR_5g093010 | 42.157 | 102 | 58 | 1 | 8 | 109 | 6 | 106 | 1.34e-23 | 91.7 |
| MS.gene50140.t1 | MTR_4g107450 | 38.384 | 99 | 60 | 1 | 3 | 101 | 6 | 103 | 2.10e-19 | 84.0 |
| MS.gene50140.t1 | MTR_8g017090 | 35.922 | 103 | 65 | 1 | 7 | 109 | 12 | 113 | 3.41e-19 | 83.6 |
| MS.gene50140.t1 | MTR_6g011250 | 35.922 | 103 | 64 | 2 | 8 | 109 | 10 | 111 | 1.70e-17 | 76.6 |
| MS.gene50140.t1 | MTR_8g079660 | 37.255 | 102 | 63 | 1 | 8 | 109 | 9 | 109 | 2.16e-17 | 77.8 |
| MS.gene50140.t1 | MTR_8g079620 | 37.864 | 103 | 63 | 1 | 8 | 110 | 9 | 110 | 6.64e-17 | 76.3 |
| MS.gene50140.t1 | MTR_6g011230 | 39.506 | 81 | 48 | 1 | 7 | 87 | 11 | 90 | 3.99e-16 | 73.6 |
| MS.gene50140.t1 | MTR_2g100020 | 32.323 | 99 | 66 | 1 | 3 | 101 | 15 | 112 | 5.66e-16 | 74.3 |
| MS.gene50140.t1 | MTR_6g011200 | 32.381 | 105 | 69 | 2 | 6 | 109 | 8 | 111 | 8.27e-16 | 73.6 |
| MS.gene50140.t1 | MTR_5g085390 | 33.333 | 105 | 68 | 2 | 6 | 109 | 8 | 111 | 3.22e-14 | 68.9 |
| MS.gene50140.t1 | MTR_8g079580 | 35.789 | 95 | 59 | 2 | 8 | 101 | 9 | 102 | 1.50e-13 | 67.0 |
| MS.gene50140.t1 | MTR_4g099230 | 30.097 | 103 | 70 | 2 | 8 | 109 | 3 | 104 | 5.97e-13 | 63.9 |
| MS.gene50140.t1 | MTR_4g088035 | 31.111 | 90 | 61 | 1 | 6 | 95 | 5 | 93 | 2.25e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50140.t1 | AT5G06080 | 51.596 | 188 | 72 | 4 | 1 | 186 | 1 | 171 | 8.16e-59 | 182 |
| MS.gene50140.t1 | AT3G58190 | 68.868 | 106 | 33 | 0 | 8 | 113 | 12 | 117 | 1.06e-50 | 163 |
| MS.gene50140.t1 | AT2G42440 | 60.656 | 122 | 43 | 1 | 1 | 117 | 1 | 122 | 1.24e-49 | 161 |
| MS.gene50140.t1 | AT2G42430 | 45.304 | 181 | 76 | 3 | 3 | 166 | 11 | 185 | 4.75e-47 | 154 |
| MS.gene50140.t1 | AT3G03760 | 60.714 | 112 | 44 | 0 | 6 | 117 | 50 | 161 | 2.93e-46 | 153 |
| MS.gene50140.t1 | AT4G00210 | 64.000 | 100 | 36 | 0 | 2 | 101 | 6 | 105 | 2.93e-46 | 152 |
| MS.gene50140.t1 | AT2G31310 | 62.500 | 104 | 39 | 0 | 1 | 104 | 1 | 104 | 6.47e-45 | 147 |
| MS.gene50140.t1 | AT2G45420 | 64.356 | 101 | 36 | 0 | 10 | 110 | 40 | 140 | 4.30e-43 | 145 |
| MS.gene50140.t1 | AT4G00220 | 60.396 | 101 | 40 | 0 | 10 | 110 | 20 | 120 | 6.36e-41 | 138 |
| MS.gene50140.t1 | AT2G45410 | 59.783 | 92 | 37 | 0 | 10 | 101 | 19 | 110 | 3.31e-38 | 130 |
| MS.gene50140.t1 | AT3G27650 | 55.670 | 97 | 42 | 1 | 6 | 102 | 38 | 133 | 2.91e-34 | 119 |
| MS.gene50140.t1 | AT5G63090 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.29e-33 | 117 |
| MS.gene50140.t1 | AT5G63090 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.29e-33 | 117 |
| MS.gene50140.t1 | AT5G63090 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.29e-33 | 117 |
| MS.gene50140.t1 | AT5G63090 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 3.29e-33 | 117 |
| MS.gene50140.t1 | AT2G30130 | 51.923 | 104 | 48 | 2 | 1 | 103 | 1 | 103 | 3.10e-32 | 115 |
| MS.gene50140.t1 | AT1G31320 | 53.261 | 92 | 42 | 1 | 3 | 94 | 9 | 99 | 5.75e-31 | 111 |
| MS.gene50140.t1 | AT5G66870 | 50.000 | 102 | 50 | 1 | 1 | 102 | 1 | 101 | 1.09e-29 | 111 |
| MS.gene50140.t1 | AT2G28500 | 45.133 | 113 | 56 | 2 | 6 | 113 | 54 | 165 | 2.06e-29 | 108 |
| MS.gene50140.t1 | AT2G30340 | 51.515 | 99 | 47 | 1 | 6 | 104 | 52 | 149 | 3.49e-29 | 109 |
| MS.gene50140.t1 | AT2G30340 | 51.515 | 99 | 47 | 1 | 6 | 104 | 51 | 148 | 4.09e-29 | 109 |
| MS.gene50140.t1 | AT3G11090 | 44.037 | 109 | 59 | 2 | 6 | 113 | 10 | 117 | 6.90e-29 | 105 |
| MS.gene50140.t1 | AT1G07900 | 45.536 | 112 | 53 | 2 | 6 | 117 | 32 | 135 | 8.17e-29 | 106 |
| MS.gene50140.t1 | AT3G26660 | 45.833 | 96 | 51 | 1 | 6 | 101 | 4 | 98 | 9.95e-29 | 103 |
| MS.gene50140.t1 | AT1G16530 | 38.462 | 143 | 84 | 3 | 6 | 147 | 13 | 152 | 1.33e-28 | 105 |
| MS.gene50140.t1 | AT3G26620 | 45.833 | 96 | 51 | 1 | 6 | 101 | 4 | 98 | 1.64e-28 | 103 |
| MS.gene50140.t1 | AT2G23660 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 9.58e-27 | 103 |
| MS.gene50140.t1 | AT2G23660 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 9.58e-27 | 103 |
| MS.gene50140.t1 | AT2G23660 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 9.58e-27 | 103 |
| MS.gene50140.t1 | AT1G65620 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.57e-26 | 99.4 |
| MS.gene50140.t1 | AT1G65620 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.57e-26 | 99.4 |
| MS.gene50140.t1 | AT1G65620 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.57e-26 | 99.4 |
| MS.gene50140.t1 | AT1G65620 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.57e-26 | 99.4 |
| MS.gene50140.t1 | AT1G65620 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 5.57e-26 | 99.4 |
| MS.gene50140.t1 | AT2G40470 | 51.220 | 82 | 39 | 1 | 6 | 87 | 19 | 99 | 5.40e-25 | 96.7 |
| MS.gene50140.t1 | AT2G40470 | 51.220 | 82 | 39 | 1 | 6 | 87 | 44 | 124 | 8.16e-25 | 97.1 |
| MS.gene50140.t1 | AT3G50510 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 4.03e-24 | 94.4 |
| MS.gene50140.t1 | AT3G50510 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 4.03e-24 | 94.4 |
| MS.gene50140.t1 | AT3G13850 | 36.893 | 103 | 64 | 1 | 7 | 109 | 36 | 137 | 7.06e-20 | 84.7 |
| MS.gene50140.t1 | AT5G35900 | 39.796 | 98 | 56 | 3 | 6 | 102 | 4 | 99 | 5.53e-18 | 78.6 |
| MS.gene50140.t1 | AT3G47870 | 32.075 | 106 | 71 | 1 | 3 | 108 | 32 | 136 | 1.30e-17 | 79.3 |
| MS.gene50140.t1 | AT1G06280 | 36.842 | 76 | 47 | 1 | 7 | 82 | 24 | 98 | 4.21e-16 | 73.6 |
| MS.gene50140.t1 | AT1G72980 | 31.683 | 101 | 68 | 1 | 3 | 103 | 9 | 108 | 1.01e-13 | 67.4 |
| MS.gene50140.t1 | AT4G22700 | 33.333 | 96 | 61 | 2 | 8 | 102 | 6 | 99 | 4.42e-12 | 62.4 |
Find 39 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCAGTGCATAAGGTTTA+TGG | 0.160867 | 5.4:+63122146 | MS.gene50140:CDS |
| CGCATGCAAGATCCTATTTA+TGG | 0.202738 | 5.4:+63122257 | MS.gene50140:CDS |
| ATGATCCAAAACTTTGATTA+TGG | 0.255926 | 5.4:-63123088 | None:intergenic |
| TATTACCATAATCAAAGTTT+TGG | 0.276932 | 5.4:+63123083 | MS.gene50140:CDS |
| GTTCCATTATTTGAGTTCAT+TGG | 0.312585 | 5.4:-63123056 | None:intergenic |
| CAAGAGGAGATAGATATTCT+TGG | 0.321470 | 5.4:+63122978 | MS.gene50140:CDS |
| CTTTGGAAAATGACAGGGTT+TGG | 0.324866 | 5.4:+63122026 | None:intergenic |
| GGATTTCCAGAGCCTTTATA+TGG | 0.325475 | 5.4:+63123143 | MS.gene50140:CDS |
| TCTGGAAATCCTTGTGCATT+AGG | 0.337625 | 5.4:-63123131 | None:intergenic |
| ACATTAGAGAAGTTCTTATC+AGG | 0.342216 | 5.4:+63123182 | MS.gene50140:CDS |
| TGAGCAACACAACCATAAAT+AGG | 0.353770 | 5.4:-63122269 | None:intergenic |
| GCACCAATGAACTCAAATAA+TGG | 0.356387 | 5.4:+63123053 | MS.gene50140:CDS |
| CACCCTTGGTTCAAGCATAA+TGG | 0.370662 | 5.4:+63123230 | MS.gene50140:CDS |
| GCCTGTTCATAGGAGAAGTA+TGG | 0.380890 | 5.4:-63122110 | None:intergenic |
| GAGTTGGAATCACCATATAA+AGG | 0.394155 | 5.4:-63123155 | None:intergenic |
| TCCATACTTCTCCTATGAAC+AGG | 0.425422 | 5.4:+63122109 | MS.gene50140:CDS |
| CTTCTCTAATGTATTTGAGT+TGG | 0.427053 | 5.4:-63123171 | None:intergenic |
| CACTATATCTTATGAAGCCT+TGG | 0.435812 | 5.4:+63122232 | MS.gene50140:CDS |
| ATGAGTTGAAGCCTGTTCAT+AGG | 0.437710 | 5.4:-63122120 | None:intergenic |
| GAATCACCATATAAAGGCTC+TGG | 0.448083 | 5.4:-63123149 | None:intergenic |
| ATAAAACTTTGGAAAATGAC+AGG | 0.453003 | 5.4:+63122020 | None:intergenic |
| CACTAGCACACTTTCTCCTT+AGG | 0.465254 | 5.4:-63122073 | None:intergenic |
| AGGGCTTCTTGAACCACCCT+TGG | 0.469455 | 5.4:+63123216 | MS.gene50140:CDS |
| TATCTATGCATTGCAACATC+AGG | 0.488764 | 5.4:+63122292 | MS.gene50140:CDS |
| GTGGAGCATGCAAGTTCCTA+AGG | 0.513337 | 5.4:+63122057 | MS.gene50140:CDS |
| CTCCATTATGCTTGAACCAA+GGG | 0.523653 | 5.4:-63123232 | None:intergenic |
| AGGATCTTGCATGCGAGCCA+AGG | 0.545581 | 5.4:-63122249 | None:intergenic |
| AGATATTCTTGGAAGTGTAA+TGG | 0.550072 | 5.4:+63122989 | MS.gene50140:CDS |
| TCTCCATTATGCTTGAACCA+AGG | 0.563541 | 5.4:-63123233 | None:intergenic |
| TAATGGAGACATGAAGAACT+AGG | 0.571172 | 5.4:+63123247 | MS.gene50140:CDS |
| ACAGGGTTTGGCTCATCATG+TGG | 0.589293 | 5.4:+63122038 | MS.gene50140:CDS |
| CATTATGCTTGAACCAAGGG+TGG | 0.607660 | 5.4:-63123229 | None:intergenic |
| AGTGTTAGTGTTGTGAATTG+TGG | 0.611640 | 5.4:+63123020 | MS.gene50140:CDS |
| GCAGGTTGCTAGCTTGCAAG+AGG | 0.615316 | 5.4:+63122962 | MS.gene50140:intron |
| CTTATCAGGAATTGATCAAG+AGG | 0.617949 | 5.4:+63123196 | MS.gene50140:CDS |
| TAAAACTTTGGAAAATGACA+GGG | 0.628064 | 5.4:+63122021 | None:intergenic |
| TTATCAGGAATTGATCAAGA+GGG | 0.643489 | 5.4:+63123197 | MS.gene50140:CDS |
| GGCTTCATAAGATATAGTGA+TGG | 0.646623 | 5.4:-63122228 | None:intergenic |
| GAGCTAATTCCTAATGCACA+AGG | 0.651993 | 5.4:+63123122 | MS.gene50140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATTCATTTGTAAGTA+AGG | - | chr5.4:63122775-63122794 | None:intergenic | 20.0% |
| !! | CTCAACACAAAAAAAAATTT+AGG | + | chr5.4:63122852-63122871 | MS.gene50140:intron | 20.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | + | chr5.4:63122633-63122652 | MS.gene50140:intron | 20.0% |
| !!! | TATTACCATAATCAAAGTTT+TGG | + | chr5.4:63123083-63123102 | MS.gene50140:CDS | 20.0% |
| ! | AAAATGCGGTAAAATATGAT+CGG | + | chr5.4:63122385-63122404 | MS.gene50140:intron | 25.0% |
| ! | AATGGATACTAGAAATATAG+CGG | - | chr5.4:63122672-63122691 | None:intergenic | 25.0% |
| ! | AATTCATTTGTAAGTAAGGA+TGG | - | chr5.4:63122771-63122790 | None:intergenic | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | - | chr5.4:63123091-63123110 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | - | chr5.4:63122690-63122709 | None:intergenic | 25.0% |
| !!! | GTGCAAAAATTTTAAAACCT+TGG | - | chr5.4:63122515-63122534 | None:intergenic | 25.0% |
| ACATTAGAGAAGTTCTTATC+AGG | + | chr5.4:63123182-63123201 | MS.gene50140:CDS | 30.0% | |
| ATATCCATATAATGCGACTT+TGG | + | chr5.4:63122564-63122583 | MS.gene50140:intron | 30.0% | |
| CTTCTCTAATGTATTTGAGT+TGG | - | chr5.4:63123174-63123193 | None:intergenic | 30.0% | |
| CTTTATATTGCACCAAAATG+CGG | + | chr5.4:63122371-63122390 | MS.gene50140:intron | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | + | chr5.4:63123197-63123216 | MS.gene50140:CDS | 30.0% | |
| TTTCTTATGTGTAATTGTGC+AGG | + | chr5.4:63122944-63122963 | MS.gene50140:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | + | chr5.4:63122989-63123008 | MS.gene50140:CDS | 30.0% |
| ! | GATCATATTTTACCGCATTT+TGG | - | chr5.4:63122386-63122405 | None:intergenic | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | - | chr5.4:63123059-63123078 | None:intergenic | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | + | chr5.4:63123100-63123119 | MS.gene50140:CDS | 30.0% |
| !! | GCATCACTTCTATTTTGAAT+AGG | - | chr5.4:63122206-63122225 | None:intergenic | 30.0% |
| !!! | ACAACCATGGTTTTAAATTG+TGG | - | chr5.4:63122482-63122501 | None:intergenic | 30.0% |
| !!! | ATTTTAAAACCTTGGTTGTG+CGG | - | chr5.4:63122507-63122526 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | + | chr5.4:63123094-63123113 | MS.gene50140:CDS | 30.0% |
| AATCTAACTAGCATCCACAA+CGG | - | chr5.4:63122436-63122455 | None:intergenic | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | + | chr5.4:63123020-63123039 | MS.gene50140:CDS | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | + | chr5.4:63122898-63122917 | MS.gene50140:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | + | chr5.4:63122978-63122997 | MS.gene50140:CDS | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | + | chr5.4:63122232-63122251 | MS.gene50140:CDS | 35.0% | |
| CATGACCTACACATAATTGT+GGG | + | chr5.4:63122897-63122916 | MS.gene50140:intron | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | + | chr5.4:63123196-63123215 | MS.gene50140:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | - | chr5.4:63123158-63123177 | None:intergenic | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | + | chr5.4:63123053-63123072 | MS.gene50140:CDS | 35.0% | |
| GGCCTAAAAAATTCTCTACA+CGG | + | chr5.4:63122873-63122892 | MS.gene50140:intron | 35.0% | |
| GGCTTCATAAGATATAGTGA+TGG | - | chr5.4:63122231-63122250 | None:intergenic | 35.0% | |
| GTTGATATTGTGGAAAGTTG+TGG | + | chr5.4:63122539-63122558 | MS.gene50140:intron | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | + | chr5.4:63122292-63122311 | MS.gene50140:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | - | chr5.4:63122272-63122291 | None:intergenic | 35.0% | |
| TTGCACAATCGTTGATATTG+TGG | + | chr5.4:63122529-63122548 | MS.gene50140:intron | 35.0% | |
| ! | CAGACCACAATTTAAAACCA+TGG | + | chr5.4:63122475-63122494 | MS.gene50140:intron | 35.0% |
| !! | TCATTTTTCAGCAGTGCATA+AGG | + | chr5.4:63122139-63122158 | MS.gene50140:CDS | 35.0% |
| CACATAATTGTGGGGTGTAA+TGG | + | chr5.4:63122906-63122925 | MS.gene50140:intron | 40.0% | |
| CCACAATTATGTGTAGGTCA+TGG | - | chr5.4:63122899-63122918 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | + | chr5.4:63122896-63122915 | MS.gene50140:intron | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | + | chr5.4:63122257-63122276 | MS.gene50140:CDS | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | - | chr5.4:63123235-63123254 | None:intergenic | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | - | chr5.4:63123152-63123171 | None:intergenic | 40.0% | |
| GAGCTAATTCCTAATGCACA+AGG | + | chr5.4:63123122-63123141 | MS.gene50140:CDS | 40.0% | |
| GATCCAGAAAGTTGGAGTAA+TGG | - | chr5.4:63122749-63122768 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | + | chr5.4:63123143-63123162 | MS.gene50140:CDS | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | - | chr5.4:63122757-63122776 | None:intergenic | 40.0% | |
| TACACCCCACAATTATGTGT+AGG | - | chr5.4:63122905-63122924 | None:intergenic | 40.0% | |
| TCAGCAGTGCATAAGGTTTA+TGG | + | chr5.4:63122146-63122165 | MS.gene50140:CDS | 40.0% | |
| TCCATACTTCTCCTATGAAC+AGG | + | chr5.4:63122109-63122128 | MS.gene50140:CDS | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | - | chr5.4:63123236-63123255 | None:intergenic | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | - | chr5.4:63123134-63123153 | None:intergenic | 40.0% | |
| TGCACCAAAGTCGCATTATA+TGG | - | chr5.4:63122571-63122590 | None:intergenic | 40.0% | |
| TGTGGATGCTAGTTAGATTG+TGG | + | chr5.4:63122437-63122456 | MS.gene50140:intron | 40.0% | |
| TTGCAATTGTAATGCCGTTG+TGG | + | chr5.4:63122419-63122438 | MS.gene50140:intron | 40.0% | |
| ! | ATGAGTTGAAGCCTGTTCAT+AGG | - | chr5.4:63122123-63122142 | None:intergenic | 40.0% |
| ! | ATGCGACTTTGGTGCATATT+TGG | + | chr5.4:63122575-63122594 | MS.gene50140:intron | 40.0% |
| ! | GTGGTCTGCAACATCAATTT+TGG | - | chr5.4:63122463-63122482 | None:intergenic | 40.0% |
| !!! | GGCCGTGTAGAGAATTTTTT+AGG | - | chr5.4:63122878-63122897 | None:intergenic | 40.0% |
| CACCCTTGGTTCAAGCATAA+TGG | + | chr5.4:63123230-63123249 | MS.gene50140:CDS | 45.0% | |
| CACTAGCACACTTTCTCCTT+AGG | - | chr5.4:63122076-63122095 | None:intergenic | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | - | chr5.4:63123232-63123251 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | - | chr5.4:63122746-63122765 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | + | chr5.4:63122743-63122762 | MS.gene50140:intron | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | - | chr5.4:63122113-63122132 | None:intergenic | 45.0% | |
| GCGGTAAAATATGATCGGTG+TGG | + | chr5.4:63122390-63122409 | MS.gene50140:intron | 45.0% | |
| GTGGAGCATGCAAGTTCCTA+AGG | + | chr5.4:63122057-63122076 | MS.gene50140:CDS | 50.0% | |
| TTGTGGGGTGTAATGGCAAG+AGG | + | chr5.4:63122913-63122932 | MS.gene50140:intron | 50.0% | |
| ! | ACAGGGTTTGGCTCATCATG+TGG | + | chr5.4:63122038-63122057 | MS.gene50140:CDS | 50.0% |
| AGGATCTTGCATGCGAGCCA+AGG | - | chr5.4:63122252-63122271 | None:intergenic | 55.0% | |
| AGGGCTTCTTGAACCACCCT+TGG | + | chr5.4:63123216-63123235 | MS.gene50140:CDS | 55.0% | |
| TGGTTGTGACCGCACAACCA+AGG | + | chr5.4:63122495-63122514 | MS.gene50140:intron | 55.0% | |
| TGGTTGTGCGGTCACAACCA+TGG | - | chr5.4:63122495-63122514 | None:intergenic | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | + | chr5.4:63122962-63122981 | MS.gene50140:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 63122035 | 63123268 | 63122035 | ID=MS.gene50140 |
| chr5.4 | mRNA | 63122035 | 63123268 | 63122035 | ID=MS.gene50140.t1;Parent=MS.gene50140 |
| chr5.4 | exon | 63122035 | 63122313 | 63122035 | ID=MS.gene50140.t1.exon1;Parent=MS.gene50140.t1 |
| chr5.4 | CDS | 63122035 | 63122313 | 63122035 | ID=cds.MS.gene50140.t1;Parent=MS.gene50140.t1 |
| chr5.4 | exon | 63122966 | 63123268 | 63122966 | ID=MS.gene50140.t1.exon2;Parent=MS.gene50140.t1 |
| chr5.4 | CDS | 63122966 | 63123268 | 63122966 | ID=cds.MS.gene50140.t1;Parent=MS.gene50140.t1 |
| Gene Sequence |
| Protein sequence |
