Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50156.t1 | XP_003616418.1 | 68 | 122 | 39 | 0 | 49 | 170 | 141 | 262 | 2.60E-37 | 165.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50156.t1 | G7KBS3 | 68.0 | 122 | 39 | 0 | 49 | 170 | 141 | 262 | 1.9e-37 | 165.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene50156.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50156.t1 | MTR_5g080030 | 74.590 | 122 | 31 | 0 | 49 | 170 | 141 | 262 | 8.87e-59 | 188 |
| MS.gene50156.t1 | MTR_5g080030 | 61.842 | 76 | 26 | 2 | 96 | 170 | 264 | 337 | 2.66e-19 | 84.0 |
| MS.gene50156.t1 | MTR_5g095070 | 64.228 | 123 | 35 | 2 | 49 | 171 | 129 | 242 | 1.01e-43 | 146 |
| MS.gene50156.t1 | MTR_1g084150 | 51.613 | 124 | 40 | 2 | 67 | 170 | 3 | 126 | 5.43e-29 | 107 |
| MS.gene50156.t1 | MTR_5g080040 | 91.837 | 49 | 4 | 0 | 1 | 49 | 1 | 49 | 1.43e-27 | 99.0 |
| MS.gene50156.t1 | MTR_5g080060 | 89.796 | 49 | 5 | 0 | 1 | 49 | 1 | 49 | 6.06e-27 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAATGGTTATGAAAT+TGG | 0.137150 | 5.4:+62885278 | None:intergenic |
| CCTTAGTTTATCTCAATTAG+TGG | 0.324039 | 5.4:+62886237 | MS.gene50156:CDS |
| TTATATCCACTCTGACCTAT+TGG | 0.347768 | 5.4:-62886963 | None:intergenic |
| ATCCGACAACCGCTGTGTTT+TGG | 0.358584 | 5.4:-62885324 | None:intergenic |
| AAAGGAAAGCAAGGAGATAA+AGG | 0.375471 | 5.4:+62887219 | MS.gene50156:CDS |
| GACTACTCTAATCAAATTAC+TGG | 0.401984 | 5.4:+62886298 | MS.gene50156:CDS |
| CCACTAATTGAGATAAACTA+AGG | 0.402610 | 5.4:-62886237 | None:intergenic |
| TGGAGATTGAAGAAGGTTGC+CGG | 0.426728 | 5.4:+62885298 | MS.gene50156:CDS |
| GTTGTCAGACAAGGAGAAAC+AGG | 0.430794 | 5.4:+62887082 | MS.gene50156:CDS |
| ATGAAATTGGAGATTGAAGA+AGG | 0.432769 | 5.4:+62885291 | MS.gene50156:CDS |
| AAAAGGAGACGTGCTCCAAT+AGG | 0.449774 | 5.4:+62886948 | MS.gene50156:CDS |
| TTTCATGTAGCCATATGAAA+AGG | 0.472708 | 5.4:+62887201 | MS.gene50156:intron |
| TCGTCTAAAAGCTGATCATC+AGG | 0.483966 | 5.4:+62887010 | MS.gene50156:CDS |
| ATAACAAAGAAAAGAAGAAA+AGG | 0.488937 | 5.4:+62886931 | MS.gene50156:CDS |
| CTTTCTAAGGTTCAGGTGAA+AGG | 0.489642 | 5.4:+62886200 | MS.gene50156:intron |
| GGTTTATTCAACGAAGAAGA+AGG | 0.495785 | 5.4:+62885392 | MS.gene50156:CDS |
| TTCTTCGTTGAATAAACCAC+CGG | 0.508962 | 5.4:-62885387 | None:intergenic |
| CACCAAAACACAGCGGTTGT+CGG | 0.521171 | 5.4:+62885322 | MS.gene50156:CDS |
| GACGAGCACATTCCTGCTTG+AGG | 0.523607 | 5.4:-62886992 | None:intergenic |
| TAGACATGGCTATTGATGCT+TGG | 0.537672 | 5.4:+62887054 | MS.gene50156:CDS |
| GAAGAAGAAGGCCCCACCGA+AGG | 0.545060 | 5.4:+62885404 | MS.gene50156:CDS |
| GGATTGAAGTAACCATCCTT+CGG | 0.555826 | 5.4:-62885420 | None:intergenic |
| GCCATATGAAAAGGAAAGCA+AGG | 0.558682 | 5.4:+62887210 | MS.gene50156:intron |
| GCCCGCGACTATGTGTCCCT+CGG | 0.570147 | 5.4:+62885350 | MS.gene50156:CDS |
| TGAAGTAACCATCCTTCGGT+GGG | 0.570885 | 5.4:-62885416 | None:intergenic |
| GCCGAGGGACACATAGTCGC+GGG | 0.578000 | 5.4:-62885351 | None:intergenic |
| AAGAAGGCCCCACCGAAGGA+TGG | 0.585344 | 5.4:+62885408 | MS.gene50156:CDS |
| ATATAATATATTCCTCAAGC+AGG | 0.589592 | 5.4:+62886980 | MS.gene50156:CDS |
| CAATGAAGATTATGCAAAGG+TGG | 0.590284 | 5.4:+62886261 | MS.gene50156:CDS |
| GCTGATCATCAGGACATATG+TGG | 0.590919 | 5.4:+62887020 | MS.gene50156:CDS |
| TTGAAGTAACCATCCTTCGG+TGG | 0.600524 | 5.4:-62885417 | None:intergenic |
| TGGCAGAGAAATTGTAGACA+TGG | 0.605105 | 5.4:+62887040 | MS.gene50156:CDS |
| TGCCGAGGGACACATAGTCG+CGG | 0.615823 | 5.4:-62885352 | None:intergenic |
| CACTAATTGAGATAAACTAA+GGG | 0.621885 | 5.4:-62886236 | None:intergenic |
| AATTTGATTAGAGTAGTCCT+CGG | 0.623111 | 5.4:-62886293 | None:intergenic |
| GGACAATGAAGATTATGCAA+AGG | 0.624602 | 5.4:+62886258 | MS.gene50156:CDS |
| TTGGAACAAGTTGTCAGACA+AGG | 0.660817 | 5.4:+62887073 | MS.gene50156:CDS |
| GAAGTAACCATCCTTCGGTG+GGG | 0.675290 | 5.4:-62885415 | None:intergenic |
| CGTGCTCCAATAGGTCAGAG+TGG | 0.690376 | 5.4:+62886957 | MS.gene50156:CDS |
| AAAGGTGGCAAAGATATCCG+AGG | 0.717174 | 5.4:+62886276 | MS.gene50156:CDS |
| GAGGGACACATAGTCGCGGG+CGG | 0.723461 | 5.4:-62885348 | None:intergenic |
| TGCCGGACACCAAAACACAG+CGG | 0.804931 | 5.4:+62885315 | MS.gene50156:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAAAGCAAAAATTAT+TGG | - | chr5.4:62885734-62885753 | None:intergenic | 15.0% |
| !!! | TATAATTTTACTTGACTAAT+TGG | + | chr5.4:62886102-62886121 | MS.gene50156:intron | 15.0% |
| !!! | TTATGATACTTATTTTGAAT+CGG | - | chr5.4:62886431-62886450 | None:intergenic | 15.0% |
| !! | ACATGAAAAGTAATTAGAAA+TGG | - | chr5.4:62887189-62887208 | None:intergenic | 20.0% |
| !! | ATAACAAAGAAAAGAAGAAA+AGG | + | chr5.4:62886931-62886950 | MS.gene50156:CDS | 20.0% |
| !! | ATCATAACAGAATACAAATT+TGG | + | chr5.4:62886444-62886463 | MS.gene50156:intron | 20.0% |
| !! | CATGTAATTGAAATATGAAA+TGG | + | chr5.4:62885584-62885603 | MS.gene50156:intron | 20.0% |
| !! | TAAATACATAAAGTAGCAAA+CGG | - | chr5.4:62886527-62886546 | None:intergenic | 20.0% |
| !!! | AAGGATATACAGTTTTATAT+AGG | + | chr5.4:62886055-62886074 | MS.gene50156:intron | 20.0% |
| !!! | ATAAAGATACAATTTTTACG+AGG | + | chr5.4:62886323-62886342 | MS.gene50156:intron | 20.0% |
| !!! | TAAAGATACAATTTTTACGA+GGG | + | chr5.4:62886324-62886343 | MS.gene50156:intron | 20.0% |
| !!! | TTCTTTTCTTTGTTATTTGT+GGG | - | chr5.4:62886927-62886946 | None:intergenic | 20.0% |
| ! | AATTCAGATTAAAAGTAGCT+CGG | + | chr5.4:62886811-62886830 | MS.gene50156:intron | 25.0% |
| ! | ATATAATATATTCCTCAAGC+AGG | + | chr5.4:62886980-62886999 | MS.gene50156:CDS | 25.0% |
| ! | ATCAAAATCTGCAAAGAAAT+TGG | - | chr5.4:62886676-62886695 | None:intergenic | 25.0% |
| ! | CACTAATTGAGATAAACTAA+GGG | - | chr5.4:62886239-62886258 | None:intergenic | 25.0% |
| ! | TAAAAATAAGCTCCAAATCA+GGG | - | chr5.4:62885446-62885465 | None:intergenic | 25.0% |
| ! | TGACAAAAAAAAAAAAAGCG+TGG | + | chr5.4:62885643-62885662 | MS.gene50156:intron | 25.0% |
| !! | AAAAAAAAAAAAAGCGTGGT+AGG | + | chr5.4:62885647-62885666 | MS.gene50156:intron | 25.0% |
| !! | ATTTGTTGAAAGAGTTTAAC+GGG | + | chr5.4:62886589-62886608 | MS.gene50156:intron | 25.0% |
| !!! | AGCTACTTTTAATCTGAATT+TGG | - | chr5.4:62886811-62886830 | None:intergenic | 25.0% |
| !!! | CTTCTTTTCTTTGTTATTTG+TGG | - | chr5.4:62886928-62886947 | None:intergenic | 25.0% |
| !!! | GATTTGTTGAAAGAGTTTAA+CGG | + | chr5.4:62886588-62886607 | MS.gene50156:intron | 25.0% |
| !!! | TTATTGGTTTATAATTGCTG+TGG | - | chr5.4:62885718-62885737 | None:intergenic | 25.0% |
| !!! | TTTTAGAGTTTTGCCTATAA+AGG | + | chr5.4:62885461-62885480 | MS.gene50156:intron | 25.0% |
| AAAAATAAGCTCCAAATCAG+GGG | - | chr5.4:62885445-62885464 | None:intergenic | 30.0% | |
| AACAGGTACAGTAAATGAAT+TGG | + | chr5.4:62887099-62887118 | MS.gene50156:intron | 30.0% | |
| AATTTGATTAGAGTAGTCCT+CGG | - | chr5.4:62886296-62886315 | None:intergenic | 30.0% | |
| ACACTTCAAATTAAATACCC+AGG | - | chr5.4:62885892-62885911 | None:intergenic | 30.0% | |
| ACCTTAAATTCTCCTTTCTA+AGG | + | chr5.4:62886187-62886206 | MS.gene50156:intron | 30.0% | |
| ACCTTAGAAAGGAGAATTTA+AGG | - | chr5.4:62886191-62886210 | None:intergenic | 30.0% | |
| ATCAAATTCTTCTACCTGTT+AGG | + | chr5.4:62885937-62885956 | MS.gene50156:intron | 30.0% | |
| ATGAAATTGGAGATTGAAGA+AGG | + | chr5.4:62885291-62885310 | MS.gene50156:CDS | 30.0% | |
| ATTCAGATTAAAAGTAGCTC+GGG | + | chr5.4:62886812-62886831 | MS.gene50156:intron | 30.0% | |
| CACTTCAAATTAAATACCCA+GGG | - | chr5.4:62885891-62885910 | None:intergenic | 30.0% | |
| CCACTAATTGAGATAAACTA+AGG | - | chr5.4:62886240-62886259 | None:intergenic | 30.0% | |
| CCTTAGTTTATCTCAATTAG+TGG | + | chr5.4:62886237-62886256 | MS.gene50156:CDS | 30.0% | |
| CTAAAAATAAGCTCCAAATC+AGG | - | chr5.4:62885447-62885466 | None:intergenic | 30.0% | |
| GACTACTCTAATCAAATTAC+TGG | + | chr5.4:62886298-62886317 | MS.gene50156:CDS | 30.0% | |
| TGAGAGCAACTAAAAATTTG+TGG | - | chr5.4:62885566-62885585 | None:intergenic | 30.0% | |
| TTAGATTCCCTTTCCTTTAT+AGG | - | chr5.4:62885477-62885496 | None:intergenic | 30.0% | |
| TTTCATGTAGCCATATGAAA+AGG | + | chr5.4:62887201-62887220 | MS.gene50156:intron | 30.0% | |
| TTTGGATTCTTACTTAAAGC+AGG | + | chr5.4:62886864-62886883 | MS.gene50156:intron | 30.0% | |
| ! | AGTTTTGCCTATAAAGGAAA+GGG | + | chr5.4:62885467-62885486 | MS.gene50156:intron | 30.0% |
| ! | TAAAACACGAGTTTGAAGTA+TGG | + | chr5.4:62886711-62886730 | MS.gene50156:intron | 30.0% |
| !! | GGGTATTTAATTTGAAGTGT+CGG | + | chr5.4:62885892-62885911 | MS.gene50156:intron | 30.0% |
| !! | TTTGAAGTGTCGGTTTATAT+AGG | + | chr5.4:62885902-62885921 | MS.gene50156:intron | 30.0% |
| AAAACTGTATATCCTTGCAG+TGG | - | chr5.4:62886051-62886070 | None:intergenic | 35.0% | |
| AAAATAAGCTCCAAATCAGG+GGG | - | chr5.4:62885444-62885463 | None:intergenic | 35.0% | |
| AAAGGAAAGCAAGGAGATAA+AGG | + | chr5.4:62887219-62887238 | MS.gene50156:CDS | 35.0% | |
| ACCAAAATCAACCATATCGT+TGG | + | chr5.4:62886628-62886647 | MS.gene50156:intron | 35.0% | |
| AGTAACCAAAGTGAATCGAT+CGG | - | chr5.4:62886483-62886502 | None:intergenic | 35.0% | |
| ATATGTATGTGTTAGACCCT+GGG | + | chr5.4:62885872-62885891 | MS.gene50156:intron | 35.0% | |
| CAATGAAGATTATGCAAAGG+TGG | + | chr5.4:62886261-62886280 | MS.gene50156:CDS | 35.0% | |
| GGACAATGAAGATTATGCAA+AGG | + | chr5.4:62886258-62886277 | MS.gene50156:CDS | 35.0% | |
| GGTTTATTCAACGAAGAAGA+AGG | + | chr5.4:62885392-62885411 | MS.gene50156:CDS | 35.0% | |
| TGAAAGAGTTTAACGGGATT+TGG | + | chr5.4:62886595-62886614 | MS.gene50156:intron | 35.0% | |
| TGACACTCTAATAACCTAAC+AGG | - | chr5.4:62885954-62885973 | None:intergenic | 35.0% | |
| TTATATCCACTCTGACCTAT+TGG | - | chr5.4:62886966-62886985 | None:intergenic | 35.0% | |
| TTCTTACTTAAAGCAGGAGT+TGG | + | chr5.4:62886870-62886889 | MS.gene50156:intron | 35.0% | |
| TTCTTCGTTGAATAAACCAC+CGG | - | chr5.4:62885390-62885409 | None:intergenic | 35.0% | |
| TTGATCTTATTACCACTGCA+AGG | + | chr5.4:62886036-62886055 | MS.gene50156:intron | 35.0% | |
| ! | CATAAAGTAGCAAACGGTTT+TGG | - | chr5.4:62886521-62886540 | None:intergenic | 35.0% |
| ! | GAGTTTTGCCTATAAAGGAA+AGG | + | chr5.4:62885466-62885485 | MS.gene50156:intron | 35.0% |
| ! | TCCTTGCTTTCCTTTTCATA+TGG | - | chr5.4:62887214-62887233 | None:intergenic | 35.0% |
| !! | AATTCTCCTTTCTAAGGTTC+AGG | + | chr5.4:62886193-62886212 | MS.gene50156:intron | 35.0% |
| !! | ACCAACGATATGGTTGATTT+TGG | - | chr5.4:62886632-62886651 | None:intergenic | 35.0% |
| CTTTCACCTGAACCTTAGAA+AGG | - | chr5.4:62886202-62886221 | None:intergenic | 40.0% | |
| GATATGTATGTGTTAGACCC+TGG | + | chr5.4:62885871-62885890 | MS.gene50156:intron | 40.0% | |
| GCCATATGAAAAGGAAAGCA+AGG | + | chr5.4:62887210-62887229 | MS.gene50156:intron | 40.0% | |
| GGATTGAAGTAACCATCCTT+CGG | - | chr5.4:62885423-62885442 | None:intergenic | 40.0% | |
| GTGCTTATGCTGCAATACTT+TGG | + | chr5.4:62886846-62886865 | MS.gene50156:intron | 40.0% | |
| TAGACATGGCTATTGATGCT+TGG | + | chr5.4:62887054-62887073 | MS.gene50156:CDS | 40.0% | |
| TCGTCTAAAAGCTGATCATC+AGG | + | chr5.4:62887010-62887029 | MS.gene50156:CDS | 40.0% | |
| TCTGCAAAGAAATTGGACCA+CGG | - | chr5.4:62886669-62886688 | None:intergenic | 40.0% | |
| TGGCAGAGAAATTGTAGACA+TGG | + | chr5.4:62887040-62887059 | MS.gene50156:CDS | 40.0% | |
| TGTTCGAATCACCAACGATA+TGG | - | chr5.4:62886642-62886661 | None:intergenic | 40.0% | |
| TTACTTCAATCCCCCTGATT+TGG | + | chr5.4:62885431-62885450 | MS.gene50156:intron | 40.0% | |
| TTGGAACAAGTTGTCAGACA+AGG | + | chr5.4:62887073-62887092 | MS.gene50156:CDS | 40.0% | |
| ! | AAAAAAAAGCGTGGTAGGTG+TGG | + | chr5.4:62885652-62885671 | MS.gene50156:intron | 40.0% |
| !! | CTTTCTAAGGTTCAGGTGAA+AGG | + | chr5.4:62886200-62886219 | MS.gene50156:intron | 40.0% |
| !!! | TAAACCACCGGCTTCTTTTT+CGG | - | chr5.4:62885378-62885397 | None:intergenic | 40.0% |
| AAAAGGAGACGTGCTCCAAT+AGG | + | chr5.4:62886948-62886967 | MS.gene50156:CDS | 45.0% | |
| AAAGGTGGCAAAGATATCCG+AGG | + | chr5.4:62886276-62886295 | MS.gene50156:CDS | 45.0% | |
| CTTGAGTAATGCCTACACTG+AGG | + | chr5.4:62885974-62885993 | MS.gene50156:intron | 45.0% | |
| GAGACACATATCCTCAGTGT+AGG | - | chr5.4:62885988-62886007 | None:intergenic | 45.0% | |
| GCTGATCATCAGGACATATG+TGG | + | chr5.4:62887020-62887039 | MS.gene50156:CDS | 45.0% | |
| GTTGTCAGACAAGGAGAAAC+AGG | + | chr5.4:62887082-62887101 | MS.gene50156:CDS | 45.0% | |
| TGAAGTAACCATCCTTCGGT+GGG | - | chr5.4:62885419-62885438 | None:intergenic | 45.0% | |
| TGGAGATTGAAGAAGGTTGC+CGG | + | chr5.4:62885298-62885317 | MS.gene50156:CDS | 45.0% | |
| TTGAAGTAACCATCCTTCGG+TGG | - | chr5.4:62885420-62885439 | None:intergenic | 45.0% | |
| ! | CACAACCGATCGATTCACTT+TGG | + | chr5.4:62886475-62886494 | MS.gene50156:intron | 45.0% |
| AGTAGCTCGGGTGAATTCAG+AGG | + | chr5.4:62886824-62886843 | MS.gene50156:intron | 50.0% | |
| CACCAAAACACAGCGGTTGT+CGG | + | chr5.4:62885322-62885341 | MS.gene50156:CDS | 50.0% | |
| CTGTACGCAGTCAAGCACAT+CGG | - | chr5.4:62886763-62886782 | None:intergenic | 50.0% | |
| GAAGTAACCATCCTTCGGTG+GGG | - | chr5.4:62885418-62885437 | None:intergenic | 50.0% | |
| GGTGATTCGAACAAGATCCG+TGG | + | chr5.4:62886649-62886668 | MS.gene50156:intron | 50.0% | |
| TGCTTGACTGCGTACAGTCA+CGG | + | chr5.4:62886766-62886785 | MS.gene50156:intron | 50.0% | |
| TGTACGCAGTCAAGCACATC+GGG | - | chr5.4:62886762-62886781 | None:intergenic | 50.0% | |
| ! | ATCCGACAACCGCTGTGTTT+TGG | - | chr5.4:62885327-62885346 | None:intergenic | 50.0% |
| !!! | AACCGCTGTGTTTTGGTGTC+CGG | - | chr5.4:62885320-62885339 | None:intergenic | 50.0% |
| CGTGCTCCAATAGGTCAGAG+TGG | + | chr5.4:62886957-62886976 | MS.gene50156:CDS | 55.0% | |
| GACGAGCACATTCCTGCTTG+AGG | - | chr5.4:62886995-62887014 | None:intergenic | 55.0% | |
| GCTTGACTGCGTACAGTCAC+GGG | + | chr5.4:62886767-62886786 | MS.gene50156:intron | 55.0% | |
| GGGGGTCGTTCGATCAAGAT+GGG | - | chr5.4:62886742-62886761 | None:intergenic | 55.0% | |
| GTACGCAGTCAAGCACATCG+GGG | - | chr5.4:62886761-62886780 | None:intergenic | 55.0% | |
| GTCGTTCGATCAAGATGGGC+TGG | - | chr5.4:62886738-62886757 | None:intergenic | 55.0% | |
| TACGCAGTCAAGCACATCGG+GGG | - | chr5.4:62886760-62886779 | None:intergenic | 55.0% | |
| TGCCGGACACCAAAACACAG+CGG | + | chr5.4:62885315-62885334 | MS.gene50156:CDS | 55.0% | |
| ! | AGTCACGGGAGTGTGACTTC+TGG | + | chr5.4:62886781-62886800 | MS.gene50156:intron | 55.0% |
| ! | CTCGGCACCGAAAAAGAAGC+CGG | + | chr5.4:62885368-62885387 | MS.gene50156:CDS | 55.0% |
| !!! | GGCTTCTTTTTCGGTGCCGA+GGG | - | chr5.4:62885369-62885388 | None:intergenic | 55.0% |
| AAGAAGGCCCCACCGAAGGA+TGG | + | chr5.4:62885408-62885427 | MS.gene50156:CDS | 60.0% | |
| CGGGGGTCGTTCGATCAAGA+TGG | - | chr5.4:62886743-62886762 | None:intergenic | 60.0% | |
| GAAGAAGAAGGCCCCACCGA+AGG | + | chr5.4:62885404-62885423 | MS.gene50156:CDS | 60.0% | |
| TGCCGAGGGACACATAGTCG+CGG | - | chr5.4:62885355-62885374 | None:intergenic | 60.0% | |
| ! | GGCACCGAAAAAGAAGCCGG+TGG | + | chr5.4:62885371-62885390 | MS.gene50156:CDS | 60.0% |
| !!! | CGGCTTCTTTTTCGGTGCCG+AGG | - | chr5.4:62885370-62885389 | None:intergenic | 60.0% |
| GAGGGACACATAGTCGCGGG+CGG | - | chr5.4:62885351-62885370 | None:intergenic | 65.0% | |
| GCCCGCGACTATGTGTCCCT+CGG | + | chr5.4:62885350-62885369 | MS.gene50156:CDS | 65.0% | |
| GCCGAGGGACACATAGTCGC+GGG | - | chr5.4:62885354-62885373 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 62885285 | 62887252 | 62885285 | ID=MS.gene50156 |
| chr5.4 | mRNA | 62885285 | 62887252 | 62885285 | ID=MS.gene50156.t1;Parent=MS.gene50156 |
| chr5.4 | exon | 62885285 | 62885429 | 62885285 | ID=MS.gene50156.t1.exon1;Parent=MS.gene50156.t1 |
| chr5.4 | CDS | 62885285 | 62885429 | 62885285 | ID=cds.MS.gene50156.t1;Parent=MS.gene50156.t1 |
| chr5.4 | exon | 62886209 | 62886319 | 62886209 | ID=MS.gene50156.t1.exon2;Parent=MS.gene50156.t1 |
| chr5.4 | CDS | 62886209 | 62886319 | 62886209 | ID=cds.MS.gene50156.t1;Parent=MS.gene50156.t1 |
| chr5.4 | exon | 62886886 | 62887103 | 62886886 | ID=MS.gene50156.t1.exon3;Parent=MS.gene50156.t1 |
| chr5.4 | CDS | 62886886 | 62887103 | 62886886 | ID=cds.MS.gene50156.t1;Parent=MS.gene50156.t1 |
| chr5.4 | exon | 62887211 | 62887252 | 62887211 | ID=MS.gene50156.t1.exon4;Parent=MS.gene50156.t1 |
| chr5.4 | CDS | 62887211 | 62887252 | 62887211 | ID=cds.MS.gene50156.t1;Parent=MS.gene50156.t1 |
| Gene Sequence |
| Protein sequence |
