Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50157.t1 | XP_003616418.1 | 89.1 | 421 | 35 | 4 | 1 | 419 | 1 | 412 | 4.20E-206 | 727.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50157.t1 | Q9LTT3 | 25.3 | 233 | 137 | 7 | 68 | 267 | 70 | 298 | 1.4e-08 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50157.t1 | G7KBS3 | 89.1 | 421 | 35 | 4 | 1 | 419 | 1 | 412 | 3.0e-206 | 727.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene50157.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50157.t1 | MTR_5g080030 | 89.286 | 420 | 34 | 4 | 1 | 418 | 1 | 411 | 0.0 | 762 |
| MS.gene50157.t1 | MTR_5g095070 | 63.673 | 245 | 74 | 4 | 43 | 287 | 34 | 263 | 9.49e-96 | 288 |
| MS.gene50157.t1 | MTR_5g095070 | 57.895 | 133 | 46 | 3 | 243 | 366 | 140 | 271 | 1.44e-37 | 137 |
| MS.gene50157.t1 | MTR_1g084150 | 40.357 | 280 | 96 | 4 | 160 | 417 | 1 | 231 | 2.19e-52 | 175 |
| MS.gene50157.t1 | MTR_4g015240 | 52.239 | 67 | 27 | 1 | 342 | 408 | 39 | 100 | 2.07e-14 | 69.3 |
| MS.gene50157.t1 | MTR_7g005970 | 25.430 | 291 | 158 | 7 | 69 | 304 | 67 | 353 | 5.10e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50157.t1 | AT3G13350 | 25.498 | 251 | 149 | 8 | 45 | 261 | 46 | 292 | 1.80e-11 | 65.5 |
| MS.gene50157.t1 | AT1G76110 | 25.610 | 246 | 131 | 7 | 69 | 264 | 69 | 312 | 9.03e-11 | 63.5 |
Find 78 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCTTCAGTGCTCTTT+TGG | 0.157665 | 5.4:-62882641 | None:intergenic |
| CACTAGTTTATCTCAATTAA+TGG | 0.164628 | 5.4:+62881293 | MS.gene50157:CDS |
| ATTCAAATCACCTGGGAAAA+AGG | 0.184616 | 5.4:-62882799 | None:intergenic |
| AAAGCTGATCATCAGTTTAA+AGG | 0.190474 | 5.4:+62882397 | MS.gene50157:CDS |
| CCAGTTGCAGTTTGAGTTGC+AGG | 0.228640 | 5.4:-62881065 | None:intergenic |
| TCGTAAGCTCACTGAGCTTT+TGG | 0.297529 | 5.4:+62879971 | MS.gene50157:CDS |
| TTATATCCACTCTGTCCTAT+TGG | 0.357025 | 5.4:-62882005 | None:intergenic |
| AGAGGAAAGCATGAAGATAA+AGG | 0.358251 | 5.4:+62882596 | MS.gene50157:CDS |
| CGTTCGTTAGATTTGCCAAC+TGG | 0.361646 | 5.4:+62882828 | MS.gene50157:CDS |
| CTCTCAGTGAGGATATAATA+TGG | 0.364315 | 5.4:-62879942 | None:intergenic |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5.4:+62880953 | MS.gene50157:CDS |
| TTCATGCTTTCCTCTTCATA+TGG | 0.373376 | 5.4:-62882588 | None:intergenic |
| TTCACGCTTGCCTCTTCATA+TGG | 0.385956 | 5.4:-62882253 | None:intergenic |
| AGGTTGATCAAGAAAAGAAA+TGG | 0.402611 | 5.4:+62880925 | MS.gene50157:intron |
| AGAGGCAAGCGTGAAGATAA+AGG | 0.407513 | 5.4:+62882261 | MS.gene50157:CDS |
| GTTGTCAGACAAGGAGAAAC+AGG | 0.408256 | 5.4:+62882124 | MS.gene50157:CDS |
| CCTCTGTCAAACTACTCTTT+TGG | 0.416635 | 5.4:+62882720 | MS.gene50157:CDS |
| TTAATTTCATTAATGGAAGA+AGG | 0.420089 | 5.4:+62879822 | None:intergenic |
| GACTACTCTAGTCAAATTAC+AGG | 0.434649 | 5.4:+62881354 | MS.gene50157:CDS |
| CCTGCAACTCAAACTGCAAC+TGG | 0.435997 | 5.4:+62881065 | MS.gene50157:CDS |
| TCGTGACCTCCAAGTAAAAC+AGG | 0.439872 | 5.4:-62880520 | None:intergenic |
| CGATAATCATTCAAATCACC+TGG | 0.440231 | 5.4:-62882807 | None:intergenic |
| TTGAGACATTGTACTTCTAC+AGG | 0.444314 | 5.4:+62881039 | MS.gene50157:CDS |
| ACTGCAACTGGCAGCAATAC+AGG | 0.446573 | 5.4:+62881077 | MS.gene50157:CDS |
| AGGAAAGGAATTAGTAGTGA+TGG | 0.453771 | 5.4:+62879842 | MS.gene50157:CDS |
| AGAACAAAGAAAAGAAGAAA+CGG | 0.457756 | 5.4:+62881973 | MS.gene50157:CDS |
| TACTTGGAGGTCACGAAAAG+AGG | 0.458176 | 5.4:+62880527 | MS.gene50157:CDS |
| TAGTAGTCACCACACACAAT+AGG | 0.458403 | 5.4:-62882681 | None:intergenic |
| AAACGGAGAGGTGCTCCAAT+AGG | 0.474962 | 5.4:+62881990 | MS.gene50157:CDS |
| TTCATTAATGGAAGAAGGAA+AGG | 0.479210 | 5.4:+62879827 | None:intergenic |
| TATGCACTCTTCTGTCCCCT+TGG | 0.481011 | 5.4:-62882340 | None:intergenic |
| TTCATCAATGGAAGAAGCAA+AGG | 0.491657 | 5.4:+62879899 | MS.gene50157:CDS |
| GGTTGATCAAGAAAAGAAAT+GGG | 0.491923 | 5.4:+62880926 | MS.gene50157:intron |
| AGAAGCAAAGGAATTAGAGA+TGG | 0.514965 | 5.4:+62879911 | MS.gene50157:CDS |
| AGTAAAACAGGTACAAGTCA+AGG | 0.532503 | 5.4:-62880508 | None:intergenic |
| AAATCACGGCTATTGATGCT+TGG | 0.536227 | 5.4:+62882428 | MS.gene50157:CDS |
| TAGAGATGGCTATTGATGCT+TGG | 0.538363 | 5.4:+62882096 | MS.gene50157:CDS |
| TCGACTTAAAGCTTATCATC+AGG | 0.545141 | 5.4:+62882052 | MS.gene50157:CDS |
| CTTTATAAGGTCCAGTCGAA+AGG | 0.545518 | 5.4:+62881256 | MS.gene50157:intron |
| CGACAACAAGTATAGTCACT+CGG | 0.548231 | 5.4:-62882856 | None:intergenic |
| GTCTAGCGCATTCATGCTTG+AGG | 0.557923 | 5.4:-62882372 | None:intergenic |
| GTTCGTTAGATTTGCCAACT+GGG | 0.558967 | 5.4:+62882829 | MS.gene50157:CDS |
| AACATGAGATTGAATCCAGA+AGG | 0.564550 | 5.4:-62879996 | None:intergenic |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5.4:+62880957 | MS.gene50157:CDS |
| TTTCATGTAGCCATATGAAG+AGG | 0.580743 | 5.4:+62882243 | MS.gene50157:intron |
| AGTCACTCGGGTTCCCCAGT+TGG | 0.582592 | 5.4:-62882843 | None:intergenic |
| ATATAATATATTCCTCAAGC+AGG | 0.589592 | 5.4:+62882022 | MS.gene50157:CDS |
| GTCGAGCACACTCCTGCTTG+AGG | 0.592986 | 5.4:-62882034 | None:intergenic |
| GAGCACTGAAGATCTTGAGA+GGG | 0.594444 | 5.4:+62882647 | MS.gene50157:CDS |
| AAAGAAAAGAAGAAACATAG+AGG | 0.596397 | 5.4:+62882313 | MS.gene50157:CDS |
| AGAGCACTGAAGATCTTGAG+AGG | 0.596789 | 5.4:+62882646 | MS.gene50157:CDS |
| GAAACATAGAGGTGTTCCAA+GGG | 0.597227 | 5.4:+62882324 | MS.gene50157:CDS |
| AGAAACATAGAGGTGTTCCA+AGG | 0.610697 | 5.4:+62882323 | MS.gene50157:CDS |
| GTAAAACAGGTACAAGTCAA+GGG | 0.610799 | 5.4:-62880507 | None:intergenic |
| TTTCATGTAGCCATATGAAG+AGG | 0.611306 | 5.4:+62882578 | MS.gene50157:intron |
| TTCGTTAGATTTGCCAACTG+GGG | 0.615840 | 5.4:+62882830 | MS.gene50157:CDS |
| CCAAAAGAGTAGTTTGACAG+AGG | 0.617143 | 5.4:-62882720 | None:intergenic |
| GCTTATCATCAGGACGTAGG+TGG | 0.622815 | 5.4:+62882062 | MS.gene50157:CDS |
| GGAATTAGTAGTGATGGAGA+TGG | 0.631774 | 5.4:+62879848 | MS.gene50157:CDS |
| TGGATATCAAGAATTTCAAG+TGG | 0.632369 | 5.4:+62881932 | MS.gene50157:CDS |
| GACAACAAGTATAGTCACTC+GGG | 0.642555 | 5.4:-62882855 | None:intergenic |
| TTGGAGGTCACGAAAAGAGG+AGG | 0.644365 | 5.4:+62880530 | MS.gene50157:CDS |
| GATAATCATTCAAATCACCT+GGG | 0.650646 | 5.4:-62882806 | None:intergenic |
| GGACGAGCAAGATTATCAGA+AGG | 0.655330 | 5.4:+62881314 | MS.gene50157:CDS |
| TTGGAATAAGTTGTCAGACA+AGG | 0.660735 | 5.4:+62882115 | MS.gene50157:CDS |
| AAAGCTCAGTGAGCTTACGA+TGG | 0.661623 | 5.4:-62879968 | None:intergenic |
| ACATGAGATTGAATCCAGAA+GGG | 0.670630 | 5.4:-62879995 | None:intergenic |
| AAAGAAAAGAAGAAACGGAG+AGG | 0.672313 | 5.4:+62881978 | MS.gene50157:CDS |
| AATTTGACTAGAGTAGTCCT+CGG | 0.673968 | 5.4:-62881349 | None:intergenic |
| AAAGCTTATCATCAGGACGT+AGG | 0.684875 | 5.4:+62882059 | MS.gene50157:CDS |
| GGTGCTCCAATAGGACAGAG+TGG | 0.688534 | 5.4:+62881999 | MS.gene50157:CDS |
| CATTAATTGAGATAAACTAG+TGG | 0.690114 | 5.4:-62881292 | None:intergenic |
| GAAGGCAGCAAAGATATCCG+AGG | 0.700751 | 5.4:+62881332 | MS.gene50157:CDS |
| GAAAAGAGGAGGTTATCACC+AGG | 0.701758 | 5.4:+62880541 | MS.gene50157:CDS |
| GTTGATCAAGAAAAGAAATG+GGG | 0.707030 | 5.4:+62880927 | MS.gene50157:CDS |
| AAACATAGAGGTGTTCCAAG+GGG | 0.716007 | 5.4:+62882325 | MS.gene50157:CDS |
| GAAGAGAGACCTATTGTGTG+TGG | 0.716478 | 5.4:+62882672 | MS.gene50157:CDS |
| TACGATGGAAGCTCTCAGTG+AGG | 0.727693 | 5.4:-62879953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATAAGAGTTTTAAATA+TGG | + | chr5.4:62881781-62881800 | MS.gene50157:intron | 10.0% |
| !! | TCATAAAAAAAATACAACTT+TGG | + | chr5.4:62881506-62881525 | MS.gene50157:intron | 15.0% |
| !! | TTGAACAAATAAAACATATT+TGG | - | chr5.4:62880842-62880861 | None:intergenic | 15.0% |
| !! | ACAAATAAAACATATTTGGA+TGG | - | chr5.4:62880838-62880857 | None:intergenic | 20.0% |
| !! | ACATGAAAAGTAATTAGAAA+TGG | - | chr5.4:62882231-62882250 | None:intergenic | 20.0% |
| !! | ACCTTAAATTCTTCTTTATA+AGG | + | chr5.4:62881243-62881262 | MS.gene50157:intron | 20.0% |
| !! | ACCTTATAAAGAAGAATTTA+AGG | - | chr5.4:62881247-62881266 | None:intergenic | 20.0% |
| !!! | AAATGAGATTTTTTCATCAA+TGG | + | chr5.4:62879887-62879906 | MS.gene50157:CDS | 20.0% |
| !!! | ACAATCCAAATTTAGTTTAA+AGG | + | chr5.4:62881873-62881892 | MS.gene50157:intron | 20.0% |
| !!! | AGATATACAATTTTAATGAG+AGG | + | chr5.4:62881383-62881402 | MS.gene50157:intron | 20.0% |
| !!! | AGTTTATAATTTTACTTGAC+TGG | + | chr5.4:62881130-62881149 | MS.gene50157:intron | 20.0% |
| !!! | ATCTCATTTTCATTTTCATA+AGG | - | chr5.4:62879876-62879895 | None:intergenic | 20.0% |
| !!! | ATTATGTTTATGTTGCATTT+TGG | + | chr5.4:62881195-62881214 | MS.gene50157:intron | 20.0% |
| !!! | ATTCTTTTTCATTCAATGAA+TGG | - | chr5.4:62881419-62881438 | None:intergenic | 20.0% |
| !!! | TATGATACTTATTTTGAATC+AGG | - | chr5.4:62881491-62881510 | None:intergenic | 20.0% |
| !!! | TTTCTTCTTTTCTTTGTTAT+TGG | - | chr5.4:62882308-62882327 | None:intergenic | 20.0% |
| ! | AAAGAAAAGAAGAAACATAG+AGG | + | chr5.4:62882313-62882332 | MS.gene50157:CDS | 25.0% |
| ! | AAATACATATAGTAGCAAAC+AGG | - | chr5.4:62881596-62881615 | None:intergenic | 25.0% |
| ! | AATGAGAAAGAGATTAAAGA+AGG | - | chr5.4:62880037-62880056 | None:intergenic | 25.0% |
| ! | ACATGAAATGTAATTACAAG+TGG | - | chr5.4:62882566-62882585 | None:intergenic | 25.0% |
| ! | AGAACAAAGAAAAGAAGAAA+CGG | + | chr5.4:62881973-62881992 | MS.gene50157:CDS | 25.0% |
| ! | ATATAACCAAACAATATACC+TGG | - | chr5.4:62880562-62880581 | None:intergenic | 25.0% |
| ! | ATATAATATATTCCTCAAGC+AGG | + | chr5.4:62882022-62882041 | MS.gene50157:CDS | 25.0% |
| ! | CATATTCGAAAATTCATACA+AGG | - | chr5.4:62880875-62880894 | None:intergenic | 25.0% |
| ! | CATTAATTGAGATAAACTAG+TGG | - | chr5.4:62881295-62881314 | None:intergenic | 25.0% |
| ! | GTAAAACAACCTTATACTTT+CGG | + | chr5.4:62880371-62880390 | MS.gene50157:intron | 25.0% |
| ! | TGTATTTATTATCTGCACTA+TGG | + | chr5.4:62881609-62881628 | MS.gene50157:intron | 25.0% |
| ! | TTCATATTCATTAATTGACG+TGG | - | chr5.4:62880308-62880327 | None:intergenic | 25.0% |
| !! | ATCCAAATTTAGTTTAAAGG+TGG | + | chr5.4:62881876-62881895 | MS.gene50157:intron | 25.0% |
| !! | ATTTGTTGGAAGAGTTTAAA+GGG | + | chr5.4:62881659-62881678 | MS.gene50157:intron | 25.0% |
| !! | CACTAGTTTATCTCAATTAA+TGG | + | chr5.4:62881293-62881312 | MS.gene50157:CDS | 25.0% |
| !! | TATAATTTTACTTGACTGGT+TGG | + | chr5.4:62881134-62881153 | MS.gene50157:intron | 25.0% |
| !! | TTAGTAACTCAATGATTTGT+TGG | + | chr5.4:62881645-62881664 | MS.gene50157:intron | 25.0% |
| !!! | AATGGAAGCTACATATTTTT+TGG | - | chr5.4:62880799-62880818 | None:intergenic | 25.0% |
| !!! | AATGTCTTTTTCTAGTCTAT+TGG | + | chr5.4:62880172-62880191 | MS.gene50157:intron | 25.0% |
| !!! | TTCTTTTCTTTGTTATTGGT+GGG | - | chr5.4:62882304-62882323 | None:intergenic | 25.0% |
| AAAGCTGATCATCAGTTTAA+AGG | + | chr5.4:62882397-62882416 | MS.gene50157:CDS | 30.0% | |
| AGCCACCTTTAAACTAAATT+TGG | - | chr5.4:62881881-62881900 | None:intergenic | 30.0% | |
| CACAATTGATCAATTCACTA+TGG | + | chr5.4:62881537-62881556 | MS.gene50157:intron | 30.0% | |
| CCAAATAGAATTGGAAAAAG+AGG | - | chr5.4:62880464-62880483 | None:intergenic | 30.0% | |
| GAACATGCAAACGAAAAAAA+TGG | - | chr5.4:62880071-62880090 | None:intergenic | 30.0% | |
| GATAATCATTCAAATCACCT+GGG | - | chr5.4:62882809-62882828 | None:intergenic | 30.0% | |
| GGTTGATCAAGAAAAGAAAT+GGG | + | chr5.4:62880926-62880945 | MS.gene50157:intron | 30.0% | |
| GTCATATTCATTAATTGACG+TGG | + | chr5.4:62880338-62880357 | MS.gene50157:intron | 30.0% | |
| GTTGATCAAGAAAAGAAATG+GGG | + | chr5.4:62880927-62880946 | MS.gene50157:CDS | 30.0% | |
| TAAAGAGAATGACATGCAAA+CGG | - | chr5.4:62880114-62880133 | None:intergenic | 30.0% | |
| TCAAAATCTGCAAAGAAATC+TGG | - | chr5.4:62881746-62881765 | None:intergenic | 30.0% | |
| TCAAATCTGCCAAATAGAAT+TGG | - | chr5.4:62880473-62880492 | None:intergenic | 30.0% | |
| TGGAAGAAAAATCATAGAGA+TGG | + | chr5.4:62882082-62882101 | MS.gene50157:CDS | 30.0% | |
| TGGATATCAAGAATTTCAAG+TGG | + | chr5.4:62881932-62881951 | MS.gene50157:CDS | 30.0% | |
| TTATATCCACATTGTTGACA+TGG | + | chr5.4:62880576-62880595 | MS.gene50157:intron | 30.0% | |
| TTATCACCAGGTATATTGTT+TGG | + | chr5.4:62880553-62880572 | MS.gene50157:intron | 30.0% | |
| ! | AGGTTGATCAAGAAAAGAAA+TGG | + | chr5.4:62880925-62880944 | MS.gene50157:intron | 30.0% |
| ! | ATATAGTAGCAAACAGGTTT+TGG | - | chr5.4:62881590-62881609 | None:intergenic | 30.0% |
| ! | CCTCTTTTTCCAATTCTATT+TGG | + | chr5.4:62880461-62880480 | MS.gene50157:intron | 30.0% |
| ! | CTTCTTTTCTTTGTTCTTTG+CGG | - | chr5.4:62881970-62881989 | None:intergenic | 30.0% |
| ! | TCTAGCAAAAAAGTTAGTCT+CGG | + | chr5.4:62880683-62880702 | MS.gene50157:intron | 30.0% |
| ! | TTCTTTTCTTTGTTCTTTGC+GGG | - | chr5.4:62881969-62881988 | None:intergenic | 30.0% |
| !! | GATTTGTTGGAAGAGTTTAA+AGG | + | chr5.4:62881658-62881677 | MS.gene50157:intron | 30.0% |
| !!! | CTTCTTTTCTTTGTTATTGG+TGG | - | chr5.4:62882305-62882324 | None:intergenic | 30.0% |
| !!! | CTTTTCAAGTTGATCACATA+AGG | - | chr5.4:62880994-62881013 | None:intergenic | 30.0% |
| AAAATCAACCATATCGTTGG+TGG | + | chr5.4:62881701-62881720 | MS.gene50157:intron | 35.0% | |
| AAAGAAAAGAAGAAACGGAG+AGG | + | chr5.4:62881978-62881997 | MS.gene50157:CDS | 35.0% | |
| AACATGAGATTGAATCCAGA+AGG | - | chr5.4:62879999-62880018 | None:intergenic | 35.0% | |
| AATTTGACTAGAGTAGTCCT+CGG | - | chr5.4:62881352-62881371 | None:intergenic | 35.0% | |
| ACAATACCATGTCAACAATG+TGG | - | chr5.4:62880585-62880604 | None:intergenic | 35.0% | |
| ACATGAGATTGAATCCAGAA+GGG | - | chr5.4:62879998-62880017 | None:intergenic | 35.0% | |
| AGAAGCAAAGGAATTAGAGA+TGG | + | chr5.4:62879911-62879930 | MS.gene50157:CDS | 35.0% | |
| AGGAAAGGAATTAGTAGTGA+TGG | + | chr5.4:62879842-62879861 | MS.gene50157:CDS | 35.0% | |
| AGTAAAACAGGTACAAGTCA+AGG | - | chr5.4:62880511-62880530 | None:intergenic | 35.0% | |
| ATTCAAATCACCTGGGAAAA+AGG | - | chr5.4:62882802-62882821 | None:intergenic | 35.0% | |
| CGATAATCATTCAAATCACC+TGG | - | chr5.4:62882810-62882829 | None:intergenic | 35.0% | |
| CTCTCAGTGAGGATATAATA+TGG | - | chr5.4:62879945-62879964 | None:intergenic | 35.0% | |
| GACTACTCTAGTCAAATTAC+AGG | + | chr5.4:62881354-62881373 | MS.gene50157:CDS | 35.0% | |
| GATCAATTCACTATGGTCTA+TGG | + | chr5.4:62881544-62881563 | MS.gene50157:intron | 35.0% | |
| GTAAAACAGGTACAAGTCAA+GGG | - | chr5.4:62880510-62880529 | None:intergenic | 35.0% | |
| TAAAGGTGACCGAAAAATCA+CGG | + | chr5.4:62882414-62882433 | MS.gene50157:CDS | 35.0% | |
| TATGTAGCTTCTAACCAACA+AGG | + | chr5.4:62880654-62880673 | MS.gene50157:intron | 35.0% | |
| TCGACTTAAAGCTTATCATC+AGG | + | chr5.4:62882052-62882071 | MS.gene50157:CDS | 35.0% | |
| TGGAAGAGTTTAAAGGGATT+TGG | + | chr5.4:62881665-62881684 | MS.gene50157:intron | 35.0% | |
| TTATATCCACTCTGTCCTAT+TGG | - | chr5.4:62882008-62882027 | None:intergenic | 35.0% | |
| TTCAAATCACCTGGGAAAAA+GGG | - | chr5.4:62882801-62882820 | None:intergenic | 35.0% | |
| TTCATCAATGGAAGAAGCAA+AGG | + | chr5.4:62879899-62879918 | MS.gene50157:CDS | 35.0% | |
| TTCATGCTTTCCTCTTCATA+TGG | - | chr5.4:62882591-62882610 | None:intergenic | 35.0% | |
| TTGAGACATTGTACTTCTAC+AGG | + | chr5.4:62881039-62881058 | MS.gene50157:CDS | 35.0% | |
| TTGCTAGATTCAAACCTTGT+TGG | - | chr5.4:62880671-62880690 | None:intergenic | 35.0% | |
| TTGGAATAAGTTGTCAGACA+AGG | + | chr5.4:62882115-62882134 | MS.gene50157:CDS | 35.0% | |
| TTTCATGTAGCCATATGAAG+AGG | + | chr5.4:62882243-62882262 | MS.gene50157:intron | 35.0% | |
| ! | AGAGGAAAGCATGAAGATAA+AGG | + | chr5.4:62882596-62882615 | MS.gene50157:CDS | 35.0% |
| ! | CATCAATAGCCGTGATTTTT+CGG | - | chr5.4:62882426-62882445 | None:intergenic | 35.0% |
| ! | TAGCATACACCGAAAGTATA+AGG | - | chr5.4:62880383-62880402 | None:intergenic | 35.0% |
| ! | TATCGTACCAGTTTTTCCAT+GGG | - | chr5.4:62882466-62882485 | None:intergenic | 35.0% |
| ! | TTATCGTACCAGTTTTTCCA+TGG | - | chr5.4:62882467-62882486 | None:intergenic | 35.0% |
| ! | TTCGTTTGCATGTTCTGTTT+TGG | + | chr5.4:62880076-62880095 | MS.gene50157:intron | 35.0% |
| !! | ACCAACGATATGGTTGATTT+TGG | - | chr5.4:62881702-62881721 | None:intergenic | 35.0% |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | + | chr5.4:62880953-62880972 | MS.gene50157:CDS | 35.0% |
| !! | TGACTTGTACCTGTTTTACT+TGG | + | chr5.4:62880511-62880530 | MS.gene50157:CDS | 35.0% |
| !!! | TTTTTTGGTTTCCCACATAC+AGG | - | chr5.4:62880784-62880803 | None:intergenic | 35.0% |
| AAAGCTTATCATCAGGACGT+AGG | + | chr5.4:62882059-62882078 | MS.gene50157:CDS | 40.0% | |
| AAATCACGGCTATTGATGCT+TGG | + | chr5.4:62882428-62882447 | MS.gene50157:CDS | 40.0% | |
| ACTGACAGAAAAAACATCCG+AGG | + | chr5.4:62882773-62882792 | MS.gene50157:CDS | 40.0% | |
| CCAAAAGAGTAGTTTGACAG+AGG | - | chr5.4:62882723-62882742 | None:intergenic | 40.0% | |
| CTTTATAAGGTCCAGTCGAA+AGG | + | chr5.4:62881256-62881275 | MS.gene50157:intron | 40.0% | |
| CTTTCAAACCACCAACGATA+TGG | - | chr5.4:62881712-62881731 | None:intergenic | 40.0% | |
| GCCAAAATCAACCATATCGT+TGG | + | chr5.4:62881698-62881717 | MS.gene50157:intron | 40.0% | |
| GCTACGTCGAAAACTAAATG+TGG | - | chr5.4:62880744-62880763 | None:intergenic | 40.0% | |
| GGATAAGCTTGATCTGCAAA+TGG | - | chr5.4:62880817-62880836 | None:intergenic | 40.0% | |
| GTTCGTTAGATTTGCCAACT+GGG | + | chr5.4:62882829-62882848 | MS.gene50157:CDS | 40.0% | |
| TAGAGATGGCTATTGATGCT+TGG | + | chr5.4:62882096-62882115 | MS.gene50157:CDS | 40.0% | |
| TAGTAGTCACCACACACAAT+AGG | - | chr5.4:62882684-62882703 | None:intergenic | 40.0% | |
| TGGCAGCAATACAGGTTAAT+TGG | + | chr5.4:62881085-62881104 | MS.gene50157:intron | 40.0% | |
| TTCGTTAGATTTGCCAACTG+GGG | + | chr5.4:62882830-62882849 | MS.gene50157:CDS | 40.0% | |
| TTCTCTTGAATGATTGCTGC+AGG | + | chr5.4:62880905-62880924 | MS.gene50157:intron | 40.0% | |
| ! | ATCGTACCAGTTTTTCCATG+GGG | - | chr5.4:62882465-62882484 | None:intergenic | 40.0% |
| ! | CAAGATCTTCAGTGCTCTTT+TGG | - | chr5.4:62882644-62882663 | None:intergenic | 40.0% |
| ! | CCTCTGTCAAACTACTCTTT+TGG | + | chr5.4:62882720-62882739 | MS.gene50157:CDS | 40.0% |
| ! | CTTGTACCTGTTTTACTTGG+AGG | + | chr5.4:62880514-62880533 | MS.gene50157:CDS | 40.0% |
| ! | GGAATTAGTAGTGATGGAGA+TGG | + | chr5.4:62879848-62879867 | MS.gene50157:CDS | 40.0% |
| !! | AAACATAGAGGTGTTCCAAG+GGG | + | chr5.4:62882325-62882344 | MS.gene50157:CDS | 40.0% |
| !! | AGAAACATAGAGGTGTTCCA+AGG | + | chr5.4:62882323-62882342 | MS.gene50157:CDS | 40.0% |
| !! | GAAACATAGAGGTGTTCCAA+GGG | + | chr5.4:62882324-62882343 | MS.gene50157:CDS | 40.0% |
| !! | GTTGGTGGTTTGAAAGAGAT+CGG | + | chr5.4:62881716-62881735 | MS.gene50157:intron | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | + | chr5.4:62880957-62880976 | MS.gene50157:CDS | 40.0% |
| !!! | GAGTTTTGATTCCTTTCGAC+TGG | - | chr5.4:62881270-62881289 | None:intergenic | 40.0% |
| AAAGCTCAGTGAGCTTACGA+TGG | - | chr5.4:62879971-62879990 | None:intergenic | 45.0% | |
| ACAAGGTTTCCTCCTGTATG+TGG | + | chr5.4:62880769-62880788 | MS.gene50157:intron | 45.0% | |
| AGAGGCAAGCGTGAAGATAA+AGG | + | chr5.4:62882261-62882280 | MS.gene50157:CDS | 45.0% | |
| CAAGGTTTCCTCCTGTATGT+GGG | + | chr5.4:62880770-62880789 | MS.gene50157:intron | 45.0% | |
| CGTTCGTTAGATTTGCCAAC+TGG | + | chr5.4:62882828-62882847 | MS.gene50157:CDS | 45.0% | |
| CTCTACGTAGTCAACCACAT+CGG | - | chr5.4:62881833-62881852 | None:intergenic | 45.0% | |
| GAAAAGAGGAGGTTATCACC+AGG | + | chr5.4:62880541-62880560 | MS.gene50157:CDS | 45.0% | |
| GAAGAGAGACCTATTGTGTG+TGG | + | chr5.4:62882672-62882691 | MS.gene50157:CDS | 45.0% | |
| GGACGAGCAAGATTATCAGA+AGG | + | chr5.4:62881314-62881333 | MS.gene50157:CDS | 45.0% | |
| GTTGTCAGACAAGGAGAAAC+AGG | + | chr5.4:62882124-62882143 | MS.gene50157:CDS | 45.0% | |
| TACTTGGAGGTCACGAAAAG+AGG | + | chr5.4:62880527-62880546 | MS.gene50157:CDS | 45.0% | |
| TCGTGACCTCCAAGTAAAAC+AGG | - | chr5.4:62880523-62880542 | None:intergenic | 45.0% | |
| TGGTTGACTACGTAGAGTCA+CGG | + | chr5.4:62881836-62881855 | MS.gene50157:intron | 45.0% | |
| TTCACGCTTGCCTCTTCATA+TGG | - | chr5.4:62882256-62882275 | None:intergenic | 45.0% | |
| TTTCGACGTAGCCTCAAACA+AGG | + | chr5.4:62880752-62880771 | MS.gene50157:intron | 45.0% | |
| ! | ACAGGAGGAAACCTTGTTTG+AGG | - | chr5.4:62880766-62880785 | None:intergenic | 45.0% |
| ! | TCGTAAGCTCACTGAGCTTT+TGG | + | chr5.4:62879971-62879990 | MS.gene50157:CDS | 45.0% |
| ! | TCGTACCAGTTTTTCCATGG+GGG | - | chr5.4:62882464-62882483 | None:intergenic | 45.0% |
| ! | TTTGGTTTCCCACATACAGG+AGG | - | chr5.4:62880781-62880800 | None:intergenic | 45.0% |
| !! | AGAGCACTGAAGATCTTGAG+AGG | + | chr5.4:62882646-62882665 | MS.gene50157:CDS | 45.0% |
| !! | GAGCACTGAAGATCTTGAGA+GGG | + | chr5.4:62882647-62882666 | MS.gene50157:CDS | 45.0% |
| !!! | ATTAAACTAATTTTTTTTTA+TGG | + | chr5.4:62880403-62880422 | MS.gene50157:intron | 5.0% |
| AATGTGGACACCACTCTCAG+AGG | - | chr5.4:62880728-62880747 | None:intergenic | 50.0% | |
| ACCTGGGAAAAAGGGATCCT+CGG | - | chr5.4:62882793-62882812 | None:intergenic | 50.0% | |
| ACTGCAACTGGCAGCAATAC+AGG | + | chr5.4:62881077-62881096 | MS.gene50157:CDS | 50.0% | |
| CCTGCAACTCAAACTGCAAC+TGG | + | chr5.4:62881065-62881084 | MS.gene50157:CDS | 50.0% | |
| GAAGGCAGCAAAGATATCCG+AGG | + | chr5.4:62881332-62881351 | MS.gene50157:CDS | 50.0% | |
| GATGTCCCCCATGGAAAAAC+TGG | + | chr5.4:62882456-62882475 | MS.gene50157:CDS | 50.0% | |
| GCTTATCATCAGGACGTAGG+TGG | + | chr5.4:62882062-62882081 | MS.gene50157:CDS | 50.0% | |
| GGTGGCTCATATGAAGTCAG+AGG | + | chr5.4:62881894-62881913 | MS.gene50157:intron | 50.0% | |
| GGTTGACTACGTAGAGTCAC+GGG | + | chr5.4:62881837-62881856 | MS.gene50157:intron | 50.0% | |
| GTCTAGCGCATTCATGCTTG+AGG | - | chr5.4:62882375-62882394 | None:intergenic | 50.0% | |
| GTGGTTCGATCAAGATGGGT+TGG | - | chr5.4:62881808-62881827 | None:intergenic | 50.0% | |
| TACGATGGAAGCTCTCAGTG+AGG | - | chr5.4:62879956-62879975 | None:intergenic | 50.0% | |
| TACGTAGTCAACCACATCGG+TGG | - | chr5.4:62881830-62881849 | None:intergenic | 50.0% | |
| TATGCACTCTTCTGTCCCCT+TGG | - | chr5.4:62882343-62882362 | None:intergenic | 50.0% | |
| TTGGAAGATGATGTCCCCCA+TGG | + | chr5.4:62882447-62882466 | MS.gene50157:CDS | 50.0% | |
| TTGGAGGTCACGAAAAGAGG+AGG | + | chr5.4:62880530-62880549 | MS.gene50157:CDS | 50.0% | |
| ! | ACTGAGCTTTTGGACCCTTC+TGG | + | chr5.4:62879981-62880000 | MS.gene50157:CDS | 50.0% |
| ! | CTCTTTTGGCAACAACGCAG+CGG | + | chr5.4:62882734-62882753 | MS.gene50157:CDS | 50.0% |
| ! | GGTGGTGGTTCGATCAAGAT+GGG | - | chr5.4:62881812-62881831 | None:intergenic | 50.0% |
| !! | AAACGGAGAGGTGCTCCAAT+AGG | + | chr5.4:62881990-62882009 | MS.gene50157:CDS | 50.0% |
| !! | AGAGGTGCTTATGCAGGAGT+TGG | + | chr5.4:62881912-62881931 | MS.gene50157:intron | 50.0% |
| !! | CCAGTTGCAGTTTGAGTTGC+AGG | - | chr5.4:62881068-62881087 | None:intergenic | 50.0% |
| !! | GAAGTCAGAGGTGCTTATGC+AGG | + | chr5.4:62881906-62881925 | MS.gene50157:intron | 50.0% |
| GGTGCTCCAATAGGACAGAG+TGG | + | chr5.4:62881999-62882018 | MS.gene50157:CDS | 55.0% | |
| GTAGTCAACCACATCGGTGG+TGG | - | chr5.4:62881827-62881846 | None:intergenic | 55.0% | |
| TGATCGAACCACCACCGATG+TGG | + | chr5.4:62881816-62881835 | MS.gene50157:intron | 55.0% | |
| ! | CGGTGGTGGTTCGATCAAGA+TGG | - | chr5.4:62881813-62881832 | None:intergenic | 55.0% |
| ! | GCTCGAATCTCCTCTGAGAG+TGG | + | chr5.4:62880715-62880734 | MS.gene50157:intron | 55.0% |
| ! | TCCGAGGATCCCTTTTTCCC+AGG | + | chr5.4:62882789-62882808 | MS.gene50157:CDS | 55.0% |
| ! | TTTTGGCAACAACGCAGCGG+TGG | + | chr5.4:62882737-62882756 | MS.gene50157:CDS | 55.0% |
| GTCGAGCACACTCCTGCTTG+AGG | - | chr5.4:62882037-62882056 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 62879834 | 62882863 | 62879834 | ID=MS.gene50157 |
| chr5.4 | mRNA | 62879834 | 62882863 | 62879834 | ID=MS.gene50157.t1;Parent=MS.gene50157 |
| chr5.4 | exon | 62879834 | 62880015 | 62879834 | ID=MS.gene50157.t1.exon1;Parent=MS.gene50157.t1 |
| chr5.4 | CDS | 62879834 | 62880015 | 62879834 | ID=cds.MS.gene50157.t1;Parent=MS.gene50157.t1 |
| chr5.4 | exon | 62880487 | 62880562 | 62880487 | ID=MS.gene50157.t1.exon2;Parent=MS.gene50157.t1 |
| chr5.4 | CDS | 62880487 | 62880562 | 62880487 | ID=cds.MS.gene50157.t1;Parent=MS.gene50157.t1 |
| chr5.4 | exon | 62880927 | 62881098 | 62880927 | ID=MS.gene50157.t1.exon3;Parent=MS.gene50157.t1 |
| chr5.4 | CDS | 62880927 | 62881098 | 62880927 | ID=cds.MS.gene50157.t1;Parent=MS.gene50157.t1 |
| chr5.4 | exon | 62881265 | 62881375 | 62881265 | ID=MS.gene50157.t1.exon4;Parent=MS.gene50157.t1 |
| chr5.4 | CDS | 62881265 | 62881375 | 62881265 | ID=cds.MS.gene50157.t1;Parent=MS.gene50157.t1 |
| chr5.4 | exon | 62881928 | 62882145 | 62881928 | ID=MS.gene50157.t1.exon5;Parent=MS.gene50157.t1 |
| chr5.4 | CDS | 62881928 | 62882145 | 62881928 | ID=cds.MS.gene50157.t1;Parent=MS.gene50157.t1 |
| chr5.4 | exon | 62882253 | 62882477 | 62882253 | ID=MS.gene50157.t1.exon6;Parent=MS.gene50157.t1 |
| chr5.4 | CDS | 62882253 | 62882477 | 62882253 | ID=cds.MS.gene50157.t1;Parent=MS.gene50157.t1 |
| chr5.4 | exon | 62882588 | 62882863 | 62882588 | ID=MS.gene50157.t1.exon7;Parent=MS.gene50157.t1 |
| chr5.4 | CDS | 62882588 | 62882863 | 62882588 | ID=cds.MS.gene50157.t1;Parent=MS.gene50157.t1 |
| Gene Sequence |
| Protein sequence |
