Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50260.t1 | XP_003612938.1 | 92.2 | 258 | 8 | 2 | 11 | 256 | 27 | 284 | 2.90E-125 | 458 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50260.t1 | Q9LSL1 | 54.5 | 213 | 71 | 5 | 61 | 256 | 107 | 310 | 6.1e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50260.t1 | A9YWR2 | 92.2 | 258 | 8 | 2 | 11 | 256 | 27 | 284 | 2.1e-125 | 458.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene50260.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50260.t1 | MTR_5g030770 | 92.248 | 258 | 8 | 2 | 11 | 256 | 27 | 284 | 3.50e-171 | 475 |
| MS.gene50260.t1 | MTR_5g030770 | 89.922 | 258 | 8 | 3 | 11 | 256 | 27 | 278 | 2.29e-158 | 442 |
| MS.gene50260.t1 | MTR_7g076840 | 72.358 | 246 | 12 | 5 | 11 | 256 | 24 | 213 | 1.56e-102 | 298 |
| MS.gene50260.t1 | MTR_3g111290 | 57.727 | 220 | 71 | 10 | 54 | 255 | 80 | 295 | 8.18e-62 | 197 |
| MS.gene50260.t1 | MTR_7g065690 | 48.649 | 148 | 36 | 6 | 14 | 161 | 26 | 133 | 1.55e-32 | 116 |
| MS.gene50260.t1 | MTR_3g498695 | 47.205 | 161 | 53 | 5 | 124 | 255 | 287 | 444 | 8.82e-30 | 116 |
| MS.gene50260.t1 | MTR_3g498695 | 47.205 | 161 | 53 | 5 | 124 | 255 | 287 | 444 | 9.11e-30 | 116 |
| MS.gene50260.t1 | MTR_7g083900 | 43.709 | 151 | 54 | 3 | 136 | 255 | 284 | 434 | 7.69e-29 | 114 |
| MS.gene50260.t1 | MTR_7g083900 | 43.709 | 151 | 54 | 3 | 136 | 255 | 284 | 434 | 7.75e-29 | 114 |
| MS.gene50260.t1 | MTR_3g030700 | 38.217 | 157 | 70 | 4 | 123 | 255 | 184 | 337 | 6.52e-24 | 99.4 |
| MS.gene50260.t1 | MTR_3g104100 | 37.584 | 149 | 64 | 4 | 136 | 255 | 193 | 341 | 1.85e-21 | 92.4 |
| MS.gene50260.t1 | MTR_2g081040 | 37.584 | 149 | 64 | 5 | 136 | 255 | 175 | 323 | 1.47e-20 | 89.7 |
| MS.gene50260.t1 | MTR_1g112680 | 52.308 | 65 | 31 | 0 | 124 | 188 | 303 | 367 | 2.92e-15 | 75.5 |
| MS.gene50260.t1 | MTR_2g084280 | 33.333 | 135 | 70 | 3 | 131 | 247 | 126 | 258 | 1.26e-13 | 69.7 |
| MS.gene50260.t1 | MTR_1g072320 | 29.814 | 161 | 81 | 3 | 122 | 250 | 449 | 609 | 8.48e-13 | 68.2 |
| MS.gene50260.t1 | MTR_4g057270 | 46.154 | 65 | 35 | 0 | 137 | 201 | 148 | 212 | 1.74e-12 | 66.6 |
| MS.gene50260.t1 | MTR_2g038040 | 44.000 | 75 | 38 | 1 | 134 | 204 | 48 | 122 | 6.20e-12 | 64.3 |
| MS.gene50260.t1 | MTR_5g014640 | 28.472 | 144 | 87 | 2 | 124 | 251 | 140 | 283 | 2.36e-11 | 63.2 |
| MS.gene50260.t1 | MTR_5g030430 | 27.815 | 151 | 79 | 3 | 135 | 255 | 490 | 640 | 4.95e-11 | 62.8 |
| MS.gene50260.t1 | MTR_8g064700 | 29.012 | 162 | 79 | 5 | 122 | 250 | 222 | 380 | 8.61e-11 | 62.0 |
| MS.gene50260.t1 | MTR_5g014520 | 30.935 | 139 | 77 | 2 | 129 | 248 | 148 | 286 | 9.02e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50260.t1 | AT5G65640 | 64.151 | 159 | 41 | 2 | 113 | 255 | 151 | 309 | 2.51e-56 | 184 |
| MS.gene50260.t1 | AT5G10570 | 44.569 | 267 | 100 | 8 | 15 | 255 | 29 | 273 | 4.58e-49 | 164 |
| MS.gene50260.t1 | AT5G65640 | 59.350 | 123 | 33 | 3 | 113 | 219 | 151 | 272 | 4.75e-30 | 114 |
| MS.gene50260.t1 | AT1G12860 | 45.517 | 145 | 54 | 3 | 136 | 255 | 265 | 409 | 6.92e-29 | 113 |
| MS.gene50260.t1 | AT1G12860 | 45.205 | 146 | 55 | 3 | 136 | 256 | 265 | 410 | 9.01e-29 | 113 |
| MS.gene50260.t1 | AT3G26744 | 44.966 | 149 | 53 | 2 | 136 | 255 | 305 | 453 | 2.69e-28 | 112 |
| MS.gene50260.t1 | AT3G26744 | 44.667 | 150 | 54 | 2 | 136 | 256 | 305 | 454 | 3.15e-28 | 112 |
| MS.gene50260.t1 | AT3G26744 | 44.667 | 150 | 54 | 2 | 136 | 256 | 305 | 454 | 3.15e-28 | 112 |
| MS.gene50260.t1 | AT3G26744 | 44.667 | 150 | 54 | 2 | 136 | 256 | 305 | 454 | 3.15e-28 | 112 |
| MS.gene50260.t1 | AT2G16910 | 34.839 | 155 | 60 | 4 | 137 | 250 | 313 | 467 | 5.04e-16 | 77.8 |
| MS.gene50260.t1 | AT2G46510 | 36.111 | 108 | 65 | 2 | 123 | 229 | 383 | 487 | 7.08e-15 | 74.3 |
| MS.gene50260.t1 | AT4G09820 | 32.117 | 137 | 89 | 2 | 127 | 260 | 352 | 487 | 1.29e-14 | 73.6 |
| MS.gene50260.t1 | AT4G29930 | 31.783 | 129 | 69 | 2 | 137 | 250 | 53 | 177 | 3.49e-14 | 70.1 |
| MS.gene50260.t1 | AT4G29930 | 34.091 | 132 | 65 | 3 | 137 | 250 | 53 | 180 | 4.96e-14 | 69.7 |
| MS.gene50260.t1 | AT4G29930 | 31.783 | 129 | 69 | 2 | 137 | 250 | 53 | 177 | 6.16e-14 | 69.7 |
| MS.gene50260.t1 | AT4G29930 | 44.595 | 74 | 37 | 1 | 137 | 210 | 53 | 122 | 1.67e-13 | 67.4 |
| MS.gene50260.t1 | AT4G29930 | 44.595 | 74 | 37 | 1 | 137 | 210 | 53 | 122 | 3.56e-13 | 67.8 |
| MS.gene50260.t1 | AT4G29930 | 44.595 | 74 | 37 | 1 | 137 | 210 | 53 | 122 | 5.39e-13 | 67.4 |
| MS.gene50260.t1 | AT4G29930 | 44.595 | 74 | 37 | 1 | 137 | 210 | 53 | 122 | 5.39e-13 | 67.4 |
| MS.gene50260.t1 | AT2G28160 | 36.667 | 90 | 52 | 1 | 123 | 212 | 121 | 205 | 3.17e-12 | 65.9 |
| MS.gene50260.t1 | AT2G28160 | 40.506 | 79 | 42 | 1 | 123 | 201 | 121 | 194 | 3.61e-12 | 65.5 |
Find 52 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCACCTTGCTGATCTT+AGG | 0.222682 | 4.4:+76961590 | None:intergenic |
| AGGCTGTCCTTCAACCCTTT+TGG | 0.223211 | 4.4:+76961688 | None:intergenic |
| CATAGATTTGAATGTCCTTA+TGG | 0.286074 | 4.4:-76961932 | MS.gene50260:CDS |
| ACAAATCAGATAAACCTTTC+AGG | 0.295093 | 4.4:-76961205 | MS.gene50260:CDS |
| AAACCTTTCAGGAATTTCTA+AGG | 0.299341 | 4.4:-76961194 | MS.gene50260:CDS |
| TTTACCACAACAAGAAAGTA+TGG | 0.308343 | 4.4:-76961840 | MS.gene50260:CDS |
| TCATCATACCCTTATCTTGA+TGG | 0.320494 | 4.4:-76961899 | MS.gene50260:CDS |
| CTTTCTTGTTGTGGTAAAAC+TGG | 0.323789 | 4.4:+76961845 | None:intergenic |
| TTTCTTACCATTACTTCATT+TGG | 0.330225 | 4.4:+76961163 | None:intergenic |
| CAAGAAAGTATGGAAGAGTT+TGG | 0.335442 | 4.4:-76961830 | MS.gene50260:CDS |
| GAGTCAAAGGTCCAACCATT+AGG | 0.336189 | 4.4:+76962025 | None:intergenic |
| ACAGCCTTCAAAGAATCTTA+TGG | 0.358273 | 4.4:-76961672 | MS.gene50260:CDS |
| ATGGAAGAGTTTGGATTTGT+TGG | 0.361028 | 4.4:-76961821 | MS.gene50260:CDS |
| CATTCAAATCTATGGTCTAA+TGG | 0.372381 | 4.4:+76961941 | None:intergenic |
| CAGTAACAATCCTGGCTTTG+TGG | 0.397442 | 4.4:+76960988 | None:intergenic |
| GAATCACCTTGCTGATCTTA+GGG | 0.398992 | 4.4:+76961591 | None:intergenic |
| ATGGACAGGAAATCAATTCT+AGG | 0.399789 | 4.4:-76961301 | MS.gene50260:CDS |
| CATAAGGACATTCAAATCTA+TGG | 0.410090 | 4.4:+76961933 | None:intergenic |
| ATCTGCTGTGCCACAAAGCC+AGG | 0.421676 | 4.4:-76960998 | MS.gene50260:CDS |
| GCAAATGAAGGGTTTAAAGA+TGG | 0.426120 | 4.4:+76961977 | None:intergenic |
| GAAGAAAGCGTTTGAATGAC+AGG | 0.437266 | 4.4:-76961637 | MS.gene50260:CDS |
| TCATCCATAAGATTCTTTGA+AGG | 0.448575 | 4.4:+76961668 | None:intergenic |
| AGTCAAAGGTCCAACCATTA+GGG | 0.456761 | 4.4:+76962026 | None:intergenic |
| AGTGAGTTACTACTCCCTAA+TGG | 0.457706 | 4.4:-76962040 | MS.gene50260:CDS |
| ATGACAGGCTTTCCATGCTT+AGG | 0.479470 | 4.4:-76961622 | MS.gene50260:CDS |
| GCCAAATCCAAAAGGGTTGA+AGG | 0.482278 | 4.4:-76961695 | MS.gene50260:CDS |
| ACTGAGAATCCATCAAGATA+AGG | 0.498561 | 4.4:+76961890 | None:intergenic |
| CTGAGAATCCATCAAGATAA+GGG | 0.499837 | 4.4:+76961891 | None:intergenic |
| ACATGAAAGAGCTTCTAGAA+AGG | 0.506584 | 4.4:-76961264 | MS.gene50260:CDS |
| AGATACTGATTCTTGTGTCC+TGG | 0.512516 | 4.4:+76961017 | None:intergenic |
| TCTTCCATACTTTCTTGTTG+TGG | 0.521400 | 4.4:+76961836 | None:intergenic |
| ACATGGAATACTTTATCCAC+TGG | 0.522465 | 4.4:-76962075 | MS.gene50260:CDS |
| ATTAAAGCCAAATGAAGTAA+TGG | 0.533491 | 4.4:-76961170 | MS.gene50260:CDS |
| TGATGTTGAGCGGAGAGACC+AGG | 0.534371 | 4.4:-76961035 | MS.gene50260:CDS |
| AGAATCTTATGGATGAAAGA+AGG | 0.538180 | 4.4:-76961661 | MS.gene50260:CDS |
| GATGATGCATCAGTTCCATA+AGG | 0.540398 | 4.4:+76961917 | None:intergenic |
| TTGTTGGAAGTGAGAACAAG+AGG | 0.555475 | 4.4:-76961805 | MS.gene50260:CDS |
| CACTAACTCGTTCAAACCAG+TGG | 0.566928 | 4.4:+76962059 | None:intergenic |
| GTGAACACATTAGAAGCATT+AGG | 0.568569 | 4.4:-76960959 | MS.gene50260:CDS |
| ACTGTTGACAGTAACAATCC+TGG | 0.569200 | 4.4:+76960980 | None:intergenic |
| ATTCCTTAGAAATTCCTGAA+AGG | 0.577724 | 4.4:+76961191 | None:intergenic |
| GTTGAGAATGAAGCAAATGA+AGG | 0.578645 | 4.4:+76961965 | None:intergenic |
| ACTGCTTATTTATAACACAC+TGG | 0.579451 | 4.4:+76960924 | None:intergenic |
| TAAAATCAGCTGCAAAGTTG+AGG | 0.582223 | 4.4:-76961771 | MS.gene50260:CDS |
| AGTTACTACTCCCTAATGGT+TGG | 0.595993 | 4.4:-76962036 | MS.gene50260:CDS |
| TTGAGAATGAAGCAAATGAA+GGG | 0.614806 | 4.4:+76961966 | None:intergenic |
| AATGGTAAGAAATTCCCCTA+AGG | 0.619045 | 4.4:-76961152 | MS.gene50260:intron |
| GGTGCTGAATCATCAAACTC+AGG | 0.624297 | 4.4:+76961866 | None:intergenic |
| TAACACACTGGTGAATCTCA+AGG | 0.625996 | 4.4:+76960936 | None:intergenic |
| AGGGACAATTGACCTAAGCA+TGG | 0.627542 | 4.4:+76961610 | None:intergenic |
| GGAACTAAACCATACCTTAG+GGG | 0.677566 | 4.4:+76961138 | None:intergenic |
| AATTGTCCCTAAGATCAGCA+AGG | 0.709185 | 4.4:-76961597 | MS.gene50260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTGAATAAATTTAATTAA+TGG | - | chr4.4:76961906-76961925 | MS.gene50260:CDS | 10.0% |
| !! | ATTAAATTTATTCAGAAACT+TGG | + | chr4.4:76961903-76961922 | None:intergenic | 15.0% |
| !!! | AAAATGTAAATTTTGTAAGA+TGG | - | chr4.4:76961669-76961688 | MS.gene50260:CDS | 15.0% |
| !! | TAGTAAGTTACAATAAGAAA+TGG | - | chr4.4:76961750-76961769 | MS.gene50260:CDS | 20.0% |
| !!! | ATGTATGTGTGTTTTATTTT+TGG | - | chr4.4:76961551-76961570 | MS.gene50260:intron | 20.0% |
| ! | ATTAAAGCCAAATGAAGTAA+TGG | - | chr4.4:76961819-76961838 | MS.gene50260:CDS | 25.0% |
| ! | GATTATGCATTAATTCTTCA+AGG | + | chr4.4:76961875-76961894 | None:intergenic | 25.0% |
| ! | TAAGTTACAATAAGAAATGG+AGG | - | chr4.4:76961753-76961772 | MS.gene50260:CDS | 25.0% |
| ! | TTTCTTACCATTACTTCATT+TGG | + | chr4.4:76961829-76961848 | None:intergenic | 25.0% |
| !! | ATTTTCATCAAATGAGTCAA+AGG | + | chr4.4:76960980-76960999 | None:intergenic | 25.0% |
| AAACCTTTCAGGAATTTCTA+AGG | - | chr4.4:76961795-76961814 | MS.gene50260:CDS | 30.0% | |
| AATTGACTAGCACTTGTATT+TGG | - | chr4.4:76961609-76961628 | MS.gene50260:CDS | 30.0% | |
| ACAAATCAGATAAACCTTTC+AGG | - | chr4.4:76961784-76961803 | MS.gene50260:CDS | 30.0% | |
| ACTGCTTATTTATAACACAC+TGG | + | chr4.4:76962068-76962087 | None:intergenic | 30.0% | |
| AGAAAAAAGCCAAATCCAAA+AGG | - | chr4.4:76961286-76961305 | MS.gene50260:CDS | 30.0% | |
| AGAATCTTATGGATGAAAGA+AGG | - | chr4.4:76961328-76961347 | MS.gene50260:intron | 30.0% | |
| ATTCCTTAGAAATTCCTGAA+AGG | + | chr4.4:76961801-76961820 | None:intergenic | 30.0% | |
| CATAAGGACATTCAAATCTA+TGG | + | chr4.4:76961059-76961078 | None:intergenic | 30.0% | |
| CATAGATTTGAATGTCCTTA+TGG | - | chr4.4:76961057-76961076 | MS.gene50260:intron | 30.0% | |
| CATTCAAATCTATGGTCTAA+TGG | + | chr4.4:76961051-76961070 | None:intergenic | 30.0% | |
| GAAAAAAGCCAAATCCAAAA+GGG | - | chr4.4:76961287-76961306 | MS.gene50260:CDS | 30.0% | |
| TAGTCAATTGTAGTCAATGA+AGG | + | chr4.4:76961598-76961617 | None:intergenic | 30.0% | |
| TCATCCATAAGATTCTTTGA+AGG | + | chr4.4:76961324-76961343 | None:intergenic | 30.0% | |
| TTGAGAATGAAGCAAATGAA+GGG | + | chr4.4:76961026-76961045 | None:intergenic | 30.0% | |
| TTTACCACAACAAGAAAGTA+TGG | - | chr4.4:76961149-76961168 | MS.gene50260:intron | 30.0% | |
| ! | ATATCTTCAATCTGAAGTGT+CGG | + | chr4.4:76961477-76961496 | None:intergenic | 30.0% |
| ! | GAAACTCCAGTTTTTAACAT+GGG | - | chr4.4:76961252-76961271 | MS.gene50260:intron | 30.0% |
| ! | GTAAATTTTGTAAGATGGAC+AGG | - | chr4.4:76961674-76961693 | MS.gene50260:CDS | 30.0% |
| ! | TGAAACTCCAGTTTTTAACA+TGG | - | chr4.4:76961251-76961270 | MS.gene50260:intron | 30.0% |
| !! | TTTTTCAGTTTGATGTTGAG+CGG | - | chr4.4:76961944-76961963 | MS.gene50260:CDS | 30.0% |
| AAGGAACTAAACCATACCTT+AGG | + | chr4.4:76961856-76961875 | None:intergenic | 35.0% | |
| AATGGTAAGAAATTCCCCTA+AGG | - | chr4.4:76961837-76961856 | MS.gene50260:CDS | 35.0% | |
| ACAGCCTTCAAAGAATCTTA+TGG | - | chr4.4:76961317-76961336 | MS.gene50260:intron | 35.0% | |
| ACTGAGAATCCATCAAGATA+AGG | + | chr4.4:76961102-76961121 | None:intergenic | 35.0% | |
| AGGAACTAAACCATACCTTA+GGG | + | chr4.4:76961855-76961874 | None:intergenic | 35.0% | |
| ATGGAAGAGTTTGGATTTGT+TGG | - | chr4.4:76961168-76961187 | MS.gene50260:CDS | 35.0% | |
| ATGGACAGGAAATCAATTCT+AGG | - | chr4.4:76961688-76961707 | MS.gene50260:CDS | 35.0% | |
| CACAAACCCATGTTAAAAAC+TGG | + | chr4.4:76961261-76961280 | None:intergenic | 35.0% | |
| CTGAGAATCCATCAAGATAA+GGG | + | chr4.4:76961101-76961120 | None:intergenic | 35.0% | |
| GCAAATGAAGGGTTTAAAGA+TGG | + | chr4.4:76961015-76961034 | None:intergenic | 35.0% | |
| GTGTGTATGTTTATGTTGTC+TGG | - | chr4.4:76961449-76961468 | MS.gene50260:intron | 35.0% | |
| GTTACAATAAGAAATGGAGG+AGG | - | chr4.4:76961756-76961775 | MS.gene50260:CDS | 35.0% | |
| GTTGAGAATGAAGCAAATGA+AGG | + | chr4.4:76961027-76961046 | None:intergenic | 35.0% | |
| TAAAATCAGCTGCAAAGTTG+AGG | - | chr4.4:76961218-76961237 | MS.gene50260:intron | 35.0% | |
| TAAGAAATTCCCCTAAGGTA+TGG | - | chr4.4:76961842-76961861 | MS.gene50260:CDS | 35.0% | |
| TCATCATACCCTTATCTTGA+TGG | - | chr4.4:76961090-76961109 | MS.gene50260:intron | 35.0% | |
| TCTTCCATACTTTCTTGTTG+TGG | + | chr4.4:76961156-76961175 | None:intergenic | 35.0% | |
| ! | ACATGAAAGAGCTTCTAGAA+AGG | - | chr4.4:76961725-76961744 | MS.gene50260:CDS | 35.0% |
| ! | CAAGAAAGTATGGAAGAGTT+TGG | - | chr4.4:76961159-76961178 | MS.gene50260:CDS | 35.0% |
| ! | CTTTCTTGTTGTGGTAAAAC+TGG | + | chr4.4:76961147-76961166 | None:intergenic | 35.0% |
| ! | GTTTTTAACATGGGTTTGTG+TGG | - | chr4.4:76961261-76961280 | MS.gene50260:CDS | 35.0% |
| !! | GTGAACACATTAGAAGCATT+AGG | - | chr4.4:76962030-76962049 | MS.gene50260:CDS | 35.0% |
| !!! | CAGTTATTCTTTTTTGTGCC+TGG | - | chr4.4:76961500-76961519 | MS.gene50260:intron | 35.0% |
| AATTGTCCCTAAGATCAGCA+AGG | - | chr4.4:76961392-76961411 | MS.gene50260:intron | 40.0% | |
| ACTGTTGACAGTAACAATCC+TGG | + | chr4.4:76962012-76962031 | None:intergenic | 40.0% | |
| AGTCAAAGGTCCAACCATTA+GGG | + | chr4.4:76960966-76960985 | None:intergenic | 40.0% | |
| AGTGAGTTACTACTCCCTAA+TGG | - | chr4.4:76960949-76960968 | MS.gene50260:CDS | 40.0% | |
| AGTTACTACTCCCTAATGGT+TGG | - | chr4.4:76960953-76960972 | MS.gene50260:CDS | 40.0% | |
| CAATAAGAAATGGAGGAGGA+AGG | - | chr4.4:76961760-76961779 | MS.gene50260:CDS | 40.0% | |
| GAATCACCTTGCTGATCTTA+GGG | + | chr4.4:76961401-76961420 | None:intergenic | 40.0% | |
| GATGATGCATCAGTTCCATA+AGG | + | chr4.4:76961075-76961094 | None:intergenic | 40.0% | |
| GGAACTAAACCATACCTTAG+GGG | + | chr4.4:76961854-76961873 | None:intergenic | 40.0% | |
| TAACACACTGGTGAATCTCA+AGG | + | chr4.4:76962056-76962075 | None:intergenic | 40.0% | |
| TGAATCACCTTGCTGATCTT+AGG | + | chr4.4:76961402-76961421 | None:intergenic | 40.0% | |
| TGAGCACTTACATAAACACC+AGG | + | chr4.4:76961521-76961540 | None:intergenic | 40.0% | |
| TTGTTGGAAGTGAGAACAAG+AGG | - | chr4.4:76961184-76961203 | MS.gene50260:CDS | 40.0% | |
| ! | TCCTTCAACCCTTTTGGATT+TGG | + | chr4.4:76961298-76961317 | None:intergenic | 40.0% |
| !! | AGATACTGATTCTTGTGTCC+TGG | + | chr4.4:76961975-76961994 | None:intergenic | 40.0% |
| !! | GAAGAAAGCGTTTGAATGAC+AGG | - | chr4.4:76961352-76961371 | MS.gene50260:intron | 40.0% |
| AGGGACAATTGACCTAAGCA+TGG | + | chr4.4:76961382-76961401 | None:intergenic | 45.0% | |
| ATGACAGGCTTTCCATGCTT+AGG | - | chr4.4:76961367-76961386 | MS.gene50260:intron | 45.0% | |
| CACTAACTCGTTCAAACCAG+TGG | + | chr4.4:76960933-76960952 | None:intergenic | 45.0% | |
| GAGTCAAAGGTCCAACCATT+AGG | + | chr4.4:76960967-76960986 | None:intergenic | 45.0% | |
| GCCAAATCCAAAAGGGTTGA+AGG | - | chr4.4:76961294-76961313 | MS.gene50260:CDS | 45.0% | |
| ! | GGTGCTGAATCATCAAACTC+AGG | + | chr4.4:76961126-76961145 | None:intergenic | 45.0% |
| !! | CAGTAACAATCCTGGCTTTG+TGG | + | chr4.4:76962004-76962023 | None:intergenic | 45.0% |
| ! | AGGCTGTCCTTCAACCCTTT+TGG | + | chr4.4:76961304-76961323 | None:intergenic | 50.0% |
| ATCTGCTGTGCCACAAAGCC+AGG | - | chr4.4:76961991-76962010 | MS.gene50260:CDS | 55.0% | |
| TGATGTTGAGCGGAGAGACC+AGG | - | chr4.4:76961954-76961973 | MS.gene50260:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 76960916 | 76962095 | 76960916 | ID=MS.gene50260 |
| chr4.4 | mRNA | 76960916 | 76962095 | 76960916 | ID=MS.gene50260.t1;Parent=MS.gene50260 |
| chr4.4 | exon | 76961598 | 76962095 | 76961598 | ID=MS.gene50260.t1.exon1;Parent=MS.gene50260.t1 |
| chr4.4 | CDS | 76961598 | 76962095 | 76961598 | ID=cds.MS.gene50260.t1;Parent=MS.gene50260.t1 |
| chr4.4 | exon | 76961260 | 76961323 | 76961260 | ID=MS.gene50260.t1.exon2;Parent=MS.gene50260.t1 |
| chr4.4 | CDS | 76961260 | 76961323 | 76961260 | ID=cds.MS.gene50260.t1;Parent=MS.gene50260.t1 |
| chr4.4 | exon | 76961153 | 76961229 | 76961153 | ID=MS.gene50260.t1.exon3;Parent=MS.gene50260.t1 |
| chr4.4 | CDS | 76961153 | 76961229 | 76961153 | ID=cds.MS.gene50260.t1;Parent=MS.gene50260.t1 |
| chr4.4 | exon | 76960916 | 76961059 | 76960916 | ID=MS.gene50260.t1.exon4;Parent=MS.gene50260.t1 |
| chr4.4 | CDS | 76960916 | 76961059 | 76960916 | ID=cds.MS.gene50260.t1;Parent=MS.gene50260.t1 |
| Gene Sequence |
| Protein sequence |
