Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50325.t1 | RZB50232.1 | 68.8 | 560 | 106 | 6 | 5 | 507 | 7 | 554 | 1.50E-208 | 735.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50325.t1 | Q9SY66 | 43.7 | 293 | 153 | 3 | 78 | 361 | 30 | 319 | 8.3e-62 | 239.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50325.t1 | A0A445FMV5 | 68.8 | 560 | 106 | 6 | 5 | 507 | 7 | 554 | 1.1e-208 | 735.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene50325.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50325.t1 | MTR_4g035820 | 59.125 | 526 | 146 | 11 | 1 | 476 | 1 | 507 | 0.0 | 575 |
| MS.gene50325.t1 | MTR_2g035140 | 51.237 | 283 | 110 | 6 | 220 | 500 | 12 | 268 | 5.39e-86 | 268 |
| MS.gene50325.t1 | MTR_3g450850 | 38.462 | 247 | 135 | 5 | 89 | 324 | 46 | 286 | 1.64e-46 | 166 |
| MS.gene50325.t1 | MTR_6g014355 | 37.154 | 253 | 138 | 4 | 154 | 397 | 5 | 245 | 8.67e-43 | 153 |
| MS.gene50325.t1 | MTR_6g051425 | 30.337 | 267 | 159 | 8 | 91 | 344 | 18 | 270 | 7.32e-31 | 123 |
| MS.gene50325.t1 | MTR_8g447350 | 60.204 | 98 | 34 | 2 | 354 | 451 | 39 | 131 | 4.45e-30 | 116 |
| MS.gene50325.t1 | MTR_1g070355 | 32.773 | 238 | 147 | 6 | 96 | 329 | 80 | 308 | 1.72e-28 | 119 |
| MS.gene50325.t1 | MTR_5g017720 | 33.898 | 177 | 78 | 4 | 350 | 520 | 21 | 164 | 1.88e-20 | 89.7 |
| MS.gene50325.t1 | MTR_3g012160 | 41.935 | 93 | 54 | 0 | 233 | 325 | 1 | 93 | 1.08e-18 | 81.6 |
| MS.gene50325.t1 | MTR_5g076070 | 24.815 | 270 | 180 | 8 | 59 | 324 | 32 | 282 | 5.44e-17 | 82.0 |
| MS.gene50325.t1 | MTR_0558s0020 | 22.519 | 262 | 177 | 5 | 95 | 336 | 41 | 296 | 1.77e-11 | 65.5 |
| MS.gene50325.t1 | MTR_7g446480 | 31.325 | 166 | 106 | 5 | 183 | 344 | 153 | 314 | 2.02e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50325.t1 | AT1G10240 | 44.604 | 278 | 148 | 2 | 87 | 361 | 45 | 319 | 1.98e-74 | 249 |
| MS.gene50325.t1 | AT1G10240 | 44.604 | 278 | 148 | 2 | 87 | 361 | 45 | 319 | 1.98e-74 | 249 |
| MS.gene50325.t1 | AT5G28530 | 38.676 | 287 | 162 | 3 | 89 | 364 | 54 | 337 | 5.01e-56 | 200 |
| MS.gene50325.t1 | AT5G28530 | 38.676 | 287 | 162 | 3 | 89 | 364 | 54 | 337 | 5.01e-56 | 200 |
| MS.gene50325.t1 | AT5G28530 | 38.676 | 287 | 162 | 3 | 89 | 364 | 54 | 337 | 5.57e-56 | 199 |
| MS.gene50325.t1 | AT5G28530 | 43.716 | 183 | 99 | 2 | 89 | 270 | 54 | 233 | 2.70e-39 | 152 |
| MS.gene50325.t1 | AT5G28530 | 43.716 | 183 | 99 | 2 | 89 | 270 | 54 | 233 | 3.06e-39 | 152 |
| MS.gene50325.t1 | AT4G38180 | 30.970 | 268 | 174 | 4 | 87 | 350 | 70 | 330 | 3.16e-29 | 123 |
| MS.gene50325.t1 | AT2G27110 | 30.418 | 263 | 147 | 7 | 90 | 350 | 49 | 277 | 1.60e-24 | 108 |
| MS.gene50325.t1 | AT2G27110 | 30.418 | 263 | 147 | 7 | 90 | 350 | 49 | 277 | 1.60e-24 | 108 |
| MS.gene50325.t1 | AT4G15090 | 27.457 | 346 | 214 | 12 | 30 | 367 | 5 | 321 | 6.69e-21 | 97.4 |
| MS.gene50325.t1 | AT4G15090 | 27.457 | 346 | 214 | 12 | 30 | 367 | 5 | 321 | 6.69e-21 | 97.4 |
| MS.gene50325.t1 | AT4G15090 | 27.457 | 346 | 214 | 12 | 30 | 367 | 5 | 321 | 6.69e-21 | 97.4 |
| MS.gene50325.t1 | AT4G15090 | 27.457 | 346 | 214 | 12 | 30 | 367 | 5 | 321 | 6.69e-21 | 97.4 |
| MS.gene50325.t1 | AT4G15090 | 27.457 | 346 | 214 | 12 | 30 | 367 | 5 | 321 | 6.69e-21 | 97.4 |
| MS.gene50325.t1 | AT3G22170 | 27.832 | 309 | 174 | 11 | 74 | 367 | 56 | 330 | 3.27e-19 | 92.0 |
| MS.gene50325.t1 | AT3G22170 | 27.832 | 309 | 174 | 11 | 74 | 367 | 56 | 330 | 3.27e-19 | 92.0 |
| MS.gene50325.t1 | AT1G76320 | 27.574 | 272 | 163 | 9 | 96 | 357 | 3 | 250 | 3.35e-16 | 82.4 |
| MS.gene50325.t1 | AT1G76320 | 27.574 | 272 | 163 | 9 | 96 | 357 | 3 | 250 | 3.45e-16 | 82.4 |
| MS.gene50325.t1 | AT1G76320 | 27.574 | 272 | 163 | 9 | 96 | 357 | 3 | 250 | 3.45e-16 | 82.4 |
| MS.gene50325.t1 | AT1G76320 | 27.305 | 282 | 169 | 10 | 96 | 367 | 3 | 258 | 6.93e-16 | 81.3 |
| MS.gene50325.t1 | AT2G27110 | 33.663 | 101 | 64 | 2 | 252 | 350 | 33 | 132 | 2.72e-12 | 70.1 |
| MS.gene50325.t1 | AT3G59470 | 30.645 | 186 | 106 | 8 | 18 | 197 | 3 | 171 | 4.04e-11 | 63.9 |
| MS.gene50325.t1 | AT3G59470 | 30.645 | 186 | 106 | 8 | 18 | 197 | 3 | 171 | 4.04e-11 | 63.9 |
Find 71 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGTTACTTTAGAAAA+TGG | 0.196031 | 4.4:+78186066 | MS.gene50325:CDS |
| CGAACGTCCCTTTCAATAAA+AGG | 0.198036 | 4.4:-78186735 | None:intergenic |
| CTCCGTTTGGGACGGCCTTT+TGG | 0.213389 | 4.4:-78187356 | None:intergenic |
| TGTAAGCACTTTGAGTTCTT+AGG | 0.221136 | 4.4:+78187119 | MS.gene50325:CDS |
| CCCAAACGGAGACGTCTTAA+AGG | 0.250676 | 4.4:+78187368 | MS.gene50325:CDS |
| TGAAGGCCATCTATCTCTTT+TGG | 0.269761 | 4.4:+78187746 | MS.gene50325:CDS |
| GCAGAAAACACACGGTCTTT+TGG | 0.275114 | 4.4:+78187072 | MS.gene50325:CDS |
| CCCCTGCTTCTTGTTATGAT+TGG | 0.287323 | 4.4:+78186907 | MS.gene50325:CDS |
| GGTAGATTCATCAAACAAAA+TGG | 0.329127 | 4.4:+78186351 | MS.gene50325:CDS |
| ACCTTTAAGACGTCTCCGTT+TGG | 0.333740 | 4.4:-78187369 | None:intergenic |
| CCTTTAAGACGTCTCCGTTT+GGG | 0.343899 | 4.4:-78187368 | None:intergenic |
| CTGATTGAGACAACAAAGTA+TGG | 0.349199 | 4.4:-78186572 | None:intergenic |
| CAACAACATCACCATATTCT+TGG | 0.355508 | 4.4:-78186932 | None:intergenic |
| TATGATTGGTACCAAGAATA+TGG | 0.369719 | 4.4:+78186921 | MS.gene50325:CDS |
| CGTGATGGCAAATTGTTAGA+AGG | 0.372218 | 4.4:-78187197 | None:intergenic |
| AATTCTTACGAAATGCCATT+TGG | 0.375827 | 4.4:+78186978 | MS.gene50325:CDS |
| TGATCTTCTTAAGTACTTTG+AGG | 0.394814 | 4.4:+78186806 | MS.gene50325:CDS |
| ACCAATCAATGTTGTCTTTG+AGG | 0.395105 | 4.4:+78187265 | MS.gene50325:CDS |
| AATTGTTAGAAGGGATTTCA+TGG | 0.400960 | 4.4:-78187187 | None:intergenic |
| GTTAAAAGAAGGCGGACTTT+TGG | 0.407700 | 4.4:+78186656 | MS.gene50325:CDS |
| TTTGTGGGTATGAATAATCA+TGG | 0.408971 | 4.4:+78187005 | MS.gene50325:CDS |
| TCCTCAAAGACAACATTGAT+TGG | 0.410148 | 4.4:-78187266 | None:intergenic |
| GTAAGCACTTTGAGTTCTTA+GGG | 0.417072 | 4.4:+78187120 | MS.gene50325:CDS |
| ATCTCAACATCTTGACTAGA+AGG | 0.417447 | 4.4:-78186189 | None:intergenic |
| TCTAAAGTAACTTCTTCTAC+TGG | 0.417760 | 4.4:-78186060 | None:intergenic |
| AGTCAAGATGTTGAGATGAA+TGG | 0.418700 | 4.4:+78186195 | MS.gene50325:CDS |
| GTGTTAGAAATTGATGAAAT+CGG | 0.428988 | 4.4:+78186141 | MS.gene50325:CDS |
| AATGGTAATGTGTTTGTGTT+GGG | 0.431088 | 4.4:+78187029 | MS.gene50325:CDS |
| GTCAAGATGTTGAGATGAAT+GGG | 0.435675 | 4.4:+78186196 | MS.gene50325:CDS |
| TAGAACCTCTTTGAAAATCA+TGG | 0.444579 | 4.4:+78186413 | MS.gene50325:CDS |
| AGGAAAATTTGACCAACAAA+AGG | 0.448625 | 4.4:-78186261 | None:intergenic |
| ATTAGTCCAAAAGAGATAGA+TGG | 0.449423 | 4.4:-78187752 | None:intergenic |
| TCAAAGAGGTTCTACCTTCA+CGG | 0.449952 | 4.4:-78186404 | None:intergenic |
| CAAAGACAACATTGATTGGT+TGG | 0.467834 | 4.4:-78187262 | None:intergenic |
| AAAGACAACATTGATTGGTT+GGG | 0.472431 | 4.4:-78187261 | None:intergenic |
| AACCAAAAGGCCGTCCCAAA+CGG | 0.473805 | 4.4:+78187354 | MS.gene50325:CDS |
| CGAATGCTTCTTCCTCACTT+AGG | 0.474844 | 4.4:-78186281 | None:intergenic |
| TTTGTAACTCGCCACTCAGT+TGG | 0.479336 | 4.4:-78186531 | None:intergenic |
| TGCACGTCAACATGGATTCT+CGG | 0.489863 | 4.4:+78186320 | MS.gene50325:CDS |
| GGTATGAATAATCATGGAAA+TGG | 0.495759 | 4.4:+78187011 | MS.gene50325:CDS |
| AGGAATTTGCTGGGAATGCA+CGG | 0.496145 | 4.4:+78187696 | MS.gene50325:CDS |
| TGAACACATGTGGATTATGC+AGG | 0.509961 | 4.4:+78187414 | MS.gene50325:CDS |
| AGGGGTGTAGGACATAATAT+TGG | 0.512096 | 4.4:+78187434 | MS.gene50325:CDS |
| TACCAATCATAACAAGAAGC+AGG | 0.517594 | 4.4:-78186909 | None:intergenic |
| CCTCCAATGTCCAAACCAAA+AGG | 0.519169 | 4.4:+78187341 | MS.gene50325:CDS |
| CATGGATTCTCGGTTCGAAA+AGG | 0.524434 | 4.4:+78186330 | MS.gene50325:CDS |
| AAATGGTAATGTGTTTGTGT+TGG | 0.538048 | 4.4:+78187028 | MS.gene50325:CDS |
| AATCATCTTCTGAGATAGTA+CGG | 0.550778 | 4.4:-78186617 | None:intergenic |
| TTTATGACATATAAGCATGA+AGG | 0.555484 | 4.4:+78187729 | MS.gene50325:CDS |
| GTGATGGCAAATTGTTAGAA+GGG | 0.570648 | 4.4:-78187196 | None:intergenic |
| AGAAGAAAGTGACGAAGACA+TGG | 0.570974 | 4.4:+78186224 | MS.gene50325:CDS |
| GGAATTTGCTGGGAATGCAC+GGG | 0.572468 | 4.4:+78187697 | MS.gene50325:CDS |
| TGTGGATTATGCAGGGGTGT+AGG | 0.573371 | 4.4:+78187422 | MS.gene50325:CDS |
| TCTGAGATAGTACGGTATGC+CGG | 0.582943 | 4.4:-78186609 | None:intergenic |
| ACCAATCATAACAAGAAGCA+GGG | 0.583841 | 4.4:-78186908 | None:intergenic |
| ATGGTAATGTGTTTGTGTTG+GGG | 0.584754 | 4.4:+78187030 | MS.gene50325:CDS |
| AACAAAATGGAATTGTGAGT+AGG | 0.593662 | 4.4:+78186364 | MS.gene50325:CDS |
| AAGAGGTATGCACGTCAACA+TGG | 0.594612 | 4.4:+78186312 | MS.gene50325:CDS |
| TAAGACGTCTCCGTTTGGGA+CGG | 0.622537 | 4.4:-78187364 | None:intergenic |
| TCGCATAACATGAACACATG+TGG | 0.623071 | 4.4:+78187404 | MS.gene50325:CDS |
| TACTAATAGCAGAAAACACA+CGG | 0.625671 | 4.4:+78187064 | MS.gene50325:CDS |
| GCTTGAATTTGCCATCGTGA+TGG | 0.632031 | 4.4:-78187212 | None:intergenic |
| AAACGGAGACGTCTTAAAGG+TGG | 0.635208 | 4.4:+78187371 | MS.gene50325:CDS |
| ATGATATATTTCCAACTGAG+TGG | 0.647408 | 4.4:+78186520 | MS.gene50325:CDS |
| GAACACATGTGGATTATGCA+GGG | 0.651208 | 4.4:+78187415 | MS.gene50325:CDS |
| AATTTGCTGGGAATACAACA+TGG | 0.678001 | 4.4:+78187661 | MS.gene50325:CDS |
| CTAACAATTTGCCATCACGA+TGG | 0.685382 | 4.4:+78187201 | MS.gene50325:CDS |
| CCAATCATAACAAGAAGCAG+GGG | 0.688419 | 4.4:-78186907 | None:intergenic |
| ATACACTTGATGAAGAAAGA+CGG | 0.691196 | 4.4:+78186865 | MS.gene50325:CDS |
| AAAGAAATAGAGAATCAACA+AGG | 0.743349 | 4.4:+78186451 | MS.gene50325:CDS |
| AACACATGTGGATTATGCAG+GGG | 0.747277 | 4.4:+78187416 | MS.gene50325:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTCTTTCAAAAGTTT+AGG | + | chr4.4:78187544-78187563 | MS.gene50325:intron | 20.0% |
| !!! | AAAAATATTGTTCCTTTTGT+TGG | + | chr4.4:78186249-78186268 | MS.gene50325:CDS | 20.0% |
| !!! | ATTTTTTTGTTAAAAGAAGG+CGG | + | chr4.4:78186648-78186667 | MS.gene50325:CDS | 20.0% |
| !!! | CACTGAATATTTTCTTTTAA+AGG | - | chr4.4:78187467-78187486 | None:intergenic | 20.0% |
| !!! | TAAACTTTTGAAAGAAGAAT+TGG | - | chr4.4:78187545-78187564 | None:intergenic | 20.0% |
| !!! | TTATCTTCCTTTTATTGAAA+GGG | + | chr4.4:78186728-78186747 | MS.gene50325:CDS | 20.0% |
| ! | AAAGAAATAGAGAATCAACA+AGG | + | chr4.4:78186451-78186470 | MS.gene50325:CDS | 25.0% |
| ! | GAAAAATACTTAGAATGTGA+CGG | - | chr4.4:78187154-78187173 | None:intergenic | 25.0% |
| ! | GTGTTAGAAATTGATGAAAT+CGG | + | chr4.4:78186141-78186160 | MS.gene50325:CDS | 25.0% |
| ! | TTTATGACATATAAGCATGA+AGG | + | chr4.4:78187729-78187748 | MS.gene50325:CDS | 25.0% |
| !! | GAAGAAGTTACTTTAGAAAA+TGG | + | chr4.4:78186066-78186085 | MS.gene50325:CDS | 25.0% |
| !! | GTTATCTTCCTTTTATTGAA+AGG | + | chr4.4:78186727-78186746 | MS.gene50325:CDS | 25.0% |
| !!! | AAGCATTCGTTTTTTATAAG+AGG | + | chr4.4:78186295-78186314 | MS.gene50325:CDS | 25.0% |
| !!! | ACATTTTGATCTTAACATTG+TGG | + | chr4.4:78186110-78186129 | MS.gene50325:CDS | 25.0% |
| !!! | CGCATTTTTTTGTTAAAAGA+AGG | + | chr4.4:78186645-78186664 | MS.gene50325:CDS | 25.0% |
| !!! | CTATTTCTTTGTTCTTTTGA+TGG | - | chr4.4:78186441-78186460 | None:intergenic | 25.0% |
| AACAAAATGGAATTGTGAGT+AGG | + | chr4.4:78186364-78186383 | MS.gene50325:CDS | 30.0% | |
| AATTCTTACGAAATGCCATT+TGG | + | chr4.4:78186978-78186997 | MS.gene50325:CDS | 30.0% | |
| AATTGTTAGAAGGGATTTCA+TGG | - | chr4.4:78187190-78187209 | None:intergenic | 30.0% | |
| AGGAAAATTTGACCAACAAA+AGG | - | chr4.4:78186264-78186283 | None:intergenic | 30.0% | |
| ATACACTTGATGAAGAAAGA+CGG | + | chr4.4:78186865-78186884 | MS.gene50325:CDS | 30.0% | |
| ATACCCACAAAAATTCCAAA+TGG | - | chr4.4:78186996-78187015 | None:intergenic | 30.0% | |
| ATGATATATTTCCAACTGAG+TGG | + | chr4.4:78186520-78186539 | MS.gene50325:CDS | 30.0% | |
| GGTAGATTCATCAAACAAAA+TGG | + | chr4.4:78186351-78186370 | MS.gene50325:CDS | 30.0% | |
| GGTATGAATAATCATGGAAA+TGG | + | chr4.4:78187011-78187030 | MS.gene50325:CDS | 30.0% | |
| TACTAATAGCAGAAAACACA+CGG | + | chr4.4:78187064-78187083 | MS.gene50325:CDS | 30.0% | |
| TATGATTGGTACCAAGAATA+TGG | + | chr4.4:78186921-78186940 | MS.gene50325:CDS | 30.0% | |
| TGATCTTCTTAAGTACTTTG+AGG | + | chr4.4:78186806-78186825 | MS.gene50325:CDS | 30.0% | |
| TTTGTGGGTATGAATAATCA+TGG | + | chr4.4:78187005-78187024 | MS.gene50325:CDS | 30.0% | |
| ! | AAAGACAACATTGATTGGTT+GGG | - | chr4.4:78187264-78187283 | None:intergenic | 30.0% |
| ! | AAATGGTAATGTGTTTGTGT+TGG | + | chr4.4:78187028-78187047 | MS.gene50325:CDS | 30.0% |
| ! | AATGGTAATGTGTTTGTGTT+GGG | + | chr4.4:78187029-78187048 | MS.gene50325:CDS | 30.0% |
| ! | TAGAACCTCTTTGAAAATCA+TGG | + | chr4.4:78186413-78186432 | MS.gene50325:CDS | 30.0% |
| ! | TCTAAAGTAACTTCTTCTAC+TGG | - | chr4.4:78186063-78186082 | None:intergenic | 30.0% |
| !! | AACACTTTTAGGAATTTGCT+GGG | + | chr4.4:78187687-78187706 | MS.gene50325:CDS | 30.0% |
| !! | AATCATCTTCTGAGATAGTA+CGG | - | chr4.4:78186620-78186639 | None:intergenic | 30.0% |
| !! | AATGCCATTTGGAATTTTTG+TGG | + | chr4.4:78186989-78187008 | MS.gene50325:CDS | 30.0% |
| !! | ATGCCATTTGGAATTTTTGT+GGG | + | chr4.4:78186990-78187009 | MS.gene50325:CDS | 30.0% |
| !!! | GACGGTTAGAACATATTTTT+TGG | + | chr4.4:78186883-78186902 | MS.gene50325:CDS | 30.0% |
| !!! | TGTTTCTGTTTTTTTATCGC+AGG | + | chr4.4:78187638-78187657 | MS.gene50325:intron | 30.0% |
| ACCAATCAATGTTGTCTTTG+AGG | + | chr4.4:78187265-78187284 | MS.gene50325:CDS | 35.0% | |
| ACCAATCATAACAAGAAGCA+GGG | - | chr4.4:78186911-78186930 | None:intergenic | 35.0% | |
| AGTCAAGATGTTGAGATGAA+TGG | + | chr4.4:78186195-78186214 | MS.gene50325:CDS | 35.0% | |
| ATCTCAACATCTTGACTAGA+AGG | - | chr4.4:78186192-78186211 | None:intergenic | 35.0% | |
| CAACAACATCACCATATTCT+TGG | - | chr4.4:78186935-78186954 | None:intergenic | 35.0% | |
| CTAGAGAAAAATGTGAAGCA+TGG | + | chr4.4:78186705-78186724 | MS.gene50325:CDS | 35.0% | |
| CTGATTGAGACAACAAAGTA+TGG | - | chr4.4:78186575-78186594 | None:intergenic | 35.0% | |
| GTCAAGATGTTGAGATGAAT+GGG | + | chr4.4:78186196-78186215 | MS.gene50325:CDS | 35.0% | |
| GTGATGGCAAATTGTTAGAA+GGG | - | chr4.4:78187199-78187218 | None:intergenic | 35.0% | |
| TACCAATCATAACAAGAAGC+AGG | - | chr4.4:78186912-78186931 | None:intergenic | 35.0% | |
| TCCTCAAAGACAACATTGAT+TGG | - | chr4.4:78187269-78187288 | None:intergenic | 35.0% | |
| ! | ACTTTGAGGATGCAAAAAAG+AGG | + | chr4.4:78186820-78186839 | MS.gene50325:CDS | 35.0% |
| ! | ATGGTAATGTGTTTGTGTTG+GGG | + | chr4.4:78187030-78187049 | MS.gene50325:CDS | 35.0% |
| ! | CAAAGACAACATTGATTGGT+TGG | - | chr4.4:78187265-78187284 | None:intergenic | 35.0% |
| ! | CAACATGGAAGAACACTTTT+AGG | + | chr4.4:78187676-78187695 | MS.gene50325:CDS | 35.0% |
| ! | GTAAGCACTTTGAGTTCTTA+GGG | + | chr4.4:78187120-78187139 | MS.gene50325:CDS | 35.0% |
| ! | TGGTCAAATTTTCCTAAGTG+AGG | + | chr4.4:78186269-78186288 | MS.gene50325:CDS | 35.0% |
| ! | TGGTTCCATGATTTTCAAAG+AGG | - | chr4.4:78186421-78186440 | None:intergenic | 35.0% |
| ! | TGTAAGCACTTTGAGTTCTT+AGG | + | chr4.4:78187119-78187138 | MS.gene50325:CDS | 35.0% |
| ! | TTTTTATCGCAGGAATTTGC+TGG | + | chr4.4:78187648-78187667 | MS.gene50325:intron | 35.0% |
| !! | AATTTGCTGGGAATACAACA+TGG | + | chr4.4:78187661-78187680 | MS.gene50325:CDS | 35.0% |
| !! | GAACACTTTTAGGAATTTGC+TGG | + | chr4.4:78187686-78187705 | MS.gene50325:CDS | 35.0% |
| !! | TTTTATCGCAGGAATTTGCT+GGG | + | chr4.4:78187649-78187668 | MS.gene50325:intron | 35.0% |
| AGAAGAAAGTGACGAAGACA+TGG | + | chr4.4:78186224-78186243 | MS.gene50325:CDS | 40.0% | |
| CCAATCATAACAAGAAGCAG+GGG | - | chr4.4:78186910-78186929 | None:intergenic | 40.0% | |
| CGAACGTCCCTTTCAATAAA+AGG | - | chr4.4:78186738-78186757 | None:intergenic | 40.0% | |
| CGTGATGGCAAATTGTTAGA+AGG | - | chr4.4:78187200-78187219 | None:intergenic | 40.0% | |
| CTAACAATTTGCCATCACGA+TGG | + | chr4.4:78187201-78187220 | MS.gene50325:CDS | 40.0% | |
| TCAAAGAGGTTCTACCTTCA+CGG | - | chr4.4:78186407-78186426 | None:intergenic | 40.0% | |
| TCGCATAACATGAACACATG+TGG | + | chr4.4:78187404-78187423 | MS.gene50325:CDS | 40.0% | |
| ! | AACACATGTGGATTATGCAG+GGG | + | chr4.4:78187416-78187435 | MS.gene50325:CDS | 40.0% |
| ! | AGGGGTGTAGGACATAATAT+TGG | + | chr4.4:78187434-78187453 | MS.gene50325:CDS | 40.0% |
| ! | CAGAAAACACACGGTCTTTT+GGG | + | chr4.4:78187073-78187092 | MS.gene50325:CDS | 40.0% |
| ! | GAACACATGTGGATTATGCA+GGG | + | chr4.4:78187415-78187434 | MS.gene50325:CDS | 40.0% |
| ! | GATTTCTTTTGTCACCGTGA+AGG | + | chr4.4:78186390-78186409 | MS.gene50325:CDS | 40.0% |
| ! | TGAACACATGTGGATTATGC+AGG | + | chr4.4:78187414-78187433 | MS.gene50325:CDS | 40.0% |
| ! | TGAAGGCCATCTATCTCTTT+TGG | + | chr4.4:78187746-78187765 | MS.gene50325:CDS | 40.0% |
| !! | ATCAGAAGTGCGCTTTTTAC+CGG | + | chr4.4:78186590-78186609 | MS.gene50325:CDS | 40.0% |
| !! | GTTAAAAGAAGGCGGACTTT+TGG | + | chr4.4:78186656-78186675 | MS.gene50325:CDS | 40.0% |
| AAACGGAGACGTCTTAAAGG+TGG | + | chr4.4:78187371-78187390 | MS.gene50325:CDS | 45.0% | |
| CCTCCAATGTCCAAACCAAA+AGG | + | chr4.4:78187341-78187360 | MS.gene50325:CDS | 45.0% | |
| CGAATGCTTCTTCCTCACTT+AGG | - | chr4.4:78186284-78186303 | None:intergenic | 45.0% | |
| GCTTGAATTTGCCATCGTGA+TGG | - | chr4.4:78187215-78187234 | None:intergenic | 45.0% | |
| TGCACGTCAACATGGATTCT+CGG | + | chr4.4:78186320-78186339 | MS.gene50325:CDS | 45.0% | |
| TTTGTAACTCGCCACTCAGT+TGG | - | chr4.4:78186534-78186553 | None:intergenic | 45.0% | |
| ! | AAGAGGTATGCACGTCAACA+TGG | + | chr4.4:78186312-78186331 | MS.gene50325:CDS | 45.0% |
| ! | CATGGATTCTCGGTTCGAAA+AGG | + | chr4.4:78186330-78186349 | MS.gene50325:CDS | 45.0% |
| ! | CCCCTGCTTCTTGTTATGAT+TGG | + | chr4.4:78186907-78186926 | MS.gene50325:CDS | 45.0% |
| ! | GCAGAAAACACACGGTCTTT+TGG | + | chr4.4:78187072-78187091 | MS.gene50325:CDS | 45.0% |
| ! | TCTGAGATAGTACGGTATGC+CGG | - | chr4.4:78186612-78186631 | None:intergenic | 45.0% |
| !! | AAACACACGGTCTTTTGGGA+TGG | + | chr4.4:78187077-78187096 | MS.gene50325:CDS | 45.0% |
| !! | ACCTTTAAGACGTCTCCGTT+TGG | - | chr4.4:78187372-78187391 | None:intergenic | 45.0% |
| !! | AGGAATTTGCTGGGAATGCA+CGG | + | chr4.4:78187696-78187715 | MS.gene50325:CDS | 45.0% |
| !! | CCTTTAAGACGTCTCCGTTT+GGG | - | chr4.4:78187371-78187390 | None:intergenic | 45.0% |
| !!! | CCTTTTGGTTTGGACATTGG+AGG | - | chr4.4:78187344-78187363 | None:intergenic | 45.0% |
| AACCAAAAGGCCGTCCCAAA+CGG | + | chr4.4:78187354-78187373 | MS.gene50325:CDS | 50.0% | |
| CCCAAACGGAGACGTCTTAA+AGG | + | chr4.4:78187368-78187387 | MS.gene50325:CDS | 50.0% | |
| TAAGACGTCTCCGTTTGGGA+CGG | - | chr4.4:78187367-78187386 | None:intergenic | 50.0% | |
| ! | TGTGGATTATGCAGGGGTGT+AGG | + | chr4.4:78187422-78187441 | MS.gene50325:CDS | 50.0% |
| !! | GGAATTTGCTGGGAATGCAC+GGG | + | chr4.4:78187697-78187716 | MS.gene50325:CDS | 50.0% |
| !! | TTTGGGACGGCCTTTTGGTT+TGG | - | chr4.4:78187354-78187373 | None:intergenic | 50.0% |
| !!! | CGGCCTTTTGGTTTGGACAT+TGG | - | chr4.4:78187347-78187366 | None:intergenic | 50.0% |
| !! | CTCCGTTTGGGACGGCCTTT+TGG | - | chr4.4:78187359-78187378 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 78185994 | 78187773 | 78185994 | ID=MS.gene50325 |
| chr4.4 | mRNA | 78185994 | 78187773 | 78185994 | ID=MS.gene50325.t1;Parent=MS.gene50325 |
| chr4.4 | exon | 78185994 | 78187517 | 78185994 | ID=MS.gene50325.t1.exon1;Parent=MS.gene50325.t1 |
| chr4.4 | CDS | 78185994 | 78187517 | 78185994 | ID=cds.MS.gene50325.t1;Parent=MS.gene50325.t1 |
| chr4.4 | exon | 78187660 | 78187773 | 78187660 | ID=MS.gene50325.t1.exon2;Parent=MS.gene50325.t1 |
| chr4.4 | CDS | 78187660 | 78187773 | 78187660 | ID=cds.MS.gene50325.t1;Parent=MS.gene50325.t1 |
| Gene Sequence |
| Protein sequence |
