Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50429.t1 | XP_013455011.1 | 86.6 | 217 | 29 | 0 | 1 | 217 | 1 | 217 | 2.30E-102 | 381.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50429.t1 | Q8L9Y3 | 39.9 | 248 | 110 | 5 | 7 | 217 | 4 | 249 | 2.8e-40 | 166.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50429.t1 | A0A072UH21 | 86.6 | 217 | 29 | 0 | 1 | 217 | 1 | 217 | 1.7e-102 | 381.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene50429.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50429.t1 | MTR_4g021790 | 86.636 | 217 | 29 | 0 | 1 | 217 | 1 | 217 | 2.32e-139 | 391 |
MS.gene50429.t1 | MTR_4g021855 | 84.332 | 217 | 34 | 0 | 1 | 217 | 1 | 217 | 4.20e-136 | 384 |
MS.gene50429.t1 | MTR_4g021845 | 82.727 | 220 | 38 | 0 | 1 | 220 | 1 | 220 | 9.26e-136 | 380 |
MS.gene50429.t1 | MTR_4g021760 | 77.982 | 218 | 47 | 1 | 1 | 217 | 1 | 218 | 1.40e-124 | 355 |
MS.gene50429.t1 | MTR_5g055260 | 62.673 | 217 | 54 | 4 | 1 | 217 | 1 | 190 | 9.54e-88 | 259 |
MS.gene50429.t1 | MTR_4g023980 | 75.373 | 134 | 33 | 0 | 58 | 191 | 38 | 171 | 1.57e-73 | 221 |
MS.gene50429.t1 | MTR_1g032570 | 45.455 | 242 | 95 | 4 | 10 | 217 | 11 | 249 | 4.41e-63 | 207 |
MS.gene50429.t1 | MTR_6g045327 | 46.190 | 210 | 109 | 3 | 10 | 217 | 14 | 221 | 1.45e-52 | 174 |
MS.gene50429.t1 | MTR_2g034960 | 41.810 | 232 | 111 | 2 | 10 | 217 | 29 | 260 | 2.10e-51 | 176 |
MS.gene50429.t1 | MTR_4g121020 | 41.453 | 234 | 111 | 2 | 10 | 217 | 31 | 264 | 5.06e-51 | 176 |
MS.gene50429.t1 | MTR_4g121020 | 41.453 | 234 | 111 | 2 | 10 | 217 | 31 | 264 | 5.38e-51 | 176 |
MS.gene50429.t1 | MTR_3g086100 | 41.525 | 236 | 110 | 5 | 10 | 217 | 13 | 248 | 1.15e-50 | 173 |
MS.gene50429.t1 | MTR_8g105600 | 42.982 | 228 | 110 | 2 | 10 | 217 | 9 | 236 | 2.80e-50 | 172 |
MS.gene50429.t1 | MTR_8g079940 | 40.426 | 235 | 114 | 4 | 9 | 217 | 24 | 258 | 1.77e-49 | 169 |
MS.gene50429.t1 | MTR_4g131600 | 38.912 | 239 | 123 | 4 | 2 | 217 | 12 | 250 | 1.52e-45 | 159 |
MS.gene50429.t1 | MTR_6g016850 | 44.172 | 163 | 88 | 2 | 10 | 169 | 9 | 171 | 1.46e-42 | 142 |
MS.gene50429.t1 | MTR_1g013170 | 37.238 | 239 | 122 | 3 | 7 | 217 | 2 | 240 | 4.93e-42 | 149 |
MS.gene50429.t1 | MTR_3g106220 | 37.037 | 243 | 115 | 4 | 10 | 217 | 8 | 247 | 5.18e-42 | 150 |
MS.gene50429.t1 | MTR_7g117705 | 34.310 | 239 | 129 | 3 | 7 | 217 | 2 | 240 | 4.11e-41 | 145 |
MS.gene50429.t1 | MTR_1g032570 | 42.623 | 183 | 69 | 3 | 68 | 217 | 1 | 180 | 9.66e-40 | 143 |
MS.gene50429.t1 | MTR_1g013180 | 35.200 | 250 | 131 | 4 | 7 | 225 | 153 | 402 | 1.40e-39 | 144 |
MS.gene50429.t1 | MTR_8g093040 | 40.476 | 210 | 106 | 5 | 10 | 217 | 14 | 206 | 4.41e-39 | 136 |
MS.gene50429.t1 | MTR_4g131570 | 35.593 | 236 | 124 | 4 | 10 | 217 | 17 | 252 | 4.96e-39 | 142 |
MS.gene50429.t1 | MTR_4g131580 | 35.193 | 233 | 126 | 4 | 10 | 217 | 17 | 249 | 6.20e-38 | 139 |
MS.gene50429.t1 | MTR_2g450070 | 33.469 | 245 | 126 | 4 | 10 | 217 | 18 | 262 | 2.66e-37 | 137 |
MS.gene50429.t1 | MTR_2g450070 | 33.469 | 245 | 126 | 4 | 10 | 217 | 18 | 262 | 3.15e-37 | 137 |
MS.gene50429.t1 | MTR_3g102600 | 34.742 | 213 | 103 | 2 | 10 | 221 | 8 | 185 | 3.93e-37 | 129 |
MS.gene50429.t1 | MTR_3g102600 | 34.928 | 209 | 100 | 2 | 10 | 217 | 8 | 181 | 9.84e-36 | 126 |
MS.gene50429.t1 | MTR_3g102590 | 35.211 | 213 | 111 | 4 | 10 | 220 | 8 | 195 | 1.52e-35 | 124 |
MS.gene50429.t1 | MTR_3g102590 | 35.238 | 210 | 109 | 4 | 10 | 217 | 8 | 192 | 2.75e-34 | 122 |
MS.gene50429.t1 | MTR_3g086100 | 40.678 | 177 | 78 | 4 | 68 | 217 | 1 | 177 | 3.51e-33 | 125 |
MS.gene50429.t1 | MTR_3g102600 | 34.118 | 170 | 77 | 1 | 52 | 221 | 2 | 136 | 7.71e-30 | 108 |
MS.gene50429.t1 | MTR_7g026400 | 36.548 | 197 | 92 | 5 | 45 | 217 | 19 | 206 | 3.13e-29 | 114 |
MS.gene50429.t1 | MTR_3g102600 | 34.337 | 166 | 74 | 1 | 52 | 217 | 2 | 132 | 1.57e-28 | 106 |
MS.gene50429.t1 | MTR_0450s0040 | 31.336 | 217 | 134 | 3 | 12 | 217 | 6 | 218 | 8.10e-28 | 108 |
MS.gene50429.t1 | MTR_4g121020 | 39.355 | 155 | 69 | 1 | 88 | 217 | 6 | 160 | 3.92e-25 | 103 |
MS.gene50429.t1 | MTR_1g013160 | 31.081 | 148 | 75 | 2 | 71 | 191 | 1 | 148 | 2.66e-16 | 73.6 |
MS.gene50429.t1 | MTR_5g041350 | 60.784 | 51 | 19 | 1 | 168 | 217 | 15 | 65 | 9.33e-15 | 72.4 |
MS.gene50429.t1 | MTR_2g016220 | 46.667 | 75 | 34 | 2 | 153 | 221 | 69 | 143 | 3.72e-14 | 70.9 |
MS.gene50429.t1 | MTR_6g032990 | 60.784 | 51 | 19 | 1 | 168 | 217 | 42 | 92 | 6.80e-14 | 70.1 |
MS.gene50429.t1 | MTR_2g016220 | 45.455 | 77 | 36 | 2 | 153 | 223 | 69 | 145 | 3.26e-13 | 68.2 |
MS.gene50429.t1 | MTR_2g016220 | 45.455 | 77 | 36 | 2 | 153 | 223 | 69 | 145 | 3.32e-13 | 68.2 |
MS.gene50429.t1 | MTR_2g086450 | 58.824 | 51 | 20 | 1 | 168 | 217 | 45 | 95 | 4.70e-13 | 67.8 |
MS.gene50429.t1 | MTR_7g115530 | 57.143 | 56 | 23 | 1 | 168 | 222 | 218 | 273 | 1.12e-12 | 65.9 |
MS.gene50429.t1 | MTR_7g115530 | 59.615 | 52 | 20 | 1 | 168 | 218 | 218 | 269 | 7.00e-12 | 63.9 |
MS.gene50429.t1 | MTR_4g081710 | 54.902 | 51 | 22 | 1 | 168 | 217 | 17 | 67 | 9.61e-12 | 63.9 |
MS.gene50429.t1 | MTR_7g069660 | 50.000 | 54 | 26 | 1 | 166 | 218 | 69 | 122 | 1.60e-11 | 63.2 |
MS.gene50429.t1 | MTR_0223s0040 | 51.852 | 54 | 25 | 1 | 166 | 218 | 16 | 69 | 1.64e-11 | 62.8 |
MS.gene50429.t1 | MTR_3g450310 | 51.852 | 54 | 25 | 1 | 166 | 218 | 17 | 70 | 2.75e-11 | 61.2 |
MS.gene50429.t1 | MTR_8g086410 | 50.000 | 54 | 26 | 1 | 166 | 218 | 109 | 162 | 5.08e-11 | 62.0 |
MS.gene50429.t1 | MTR_2g090675 | 43.373 | 83 | 44 | 3 | 137 | 217 | 129 | 210 | 5.66e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50429.t1 | AT2G01760 | 39.919 | 248 | 110 | 5 | 7 | 217 | 4 | 249 | 5.61e-52 | 172 |
MS.gene50429.t1 | AT3G16857 | 38.976 | 254 | 109 | 4 | 10 | 217 | 33 | 286 | 1.57e-46 | 163 |
MS.gene50429.t1 | AT3G16857 | 38.976 | 254 | 109 | 4 | 10 | 217 | 33 | 286 | 2.09e-46 | 163 |
MS.gene50429.t1 | AT2G01760 | 35.870 | 276 | 110 | 6 | 7 | 217 | 4 | 277 | 5.36e-46 | 157 |
MS.gene50429.t1 | AT1G67710 | 39.407 | 236 | 114 | 4 | 11 | 217 | 8 | 243 | 1.92e-44 | 155 |
MS.gene50429.t1 | AT4G31920 | 38.462 | 234 | 123 | 6 | 10 | 225 | 13 | 243 | 1.12e-41 | 149 |
MS.gene50429.t1 | AT2G25180 | 37.069 | 232 | 122 | 4 | 10 | 217 | 13 | 244 | 1.20e-39 | 144 |
MS.gene50429.t1 | AT3G16857 | 37.674 | 215 | 88 | 4 | 49 | 217 | 2 | 216 | 1.18e-34 | 130 |
MS.gene50429.t1 | AT5G58080 | 37.021 | 235 | 116 | 6 | 10 | 217 | 14 | 243 | 1.05e-33 | 127 |
MS.gene50429.t1 | AT5G49240 | 33.054 | 239 | 133 | 5 | 9 | 220 | 37 | 275 | 3.08e-33 | 121 |
MS.gene50429.t1 | AT2G01760 | 37.634 | 186 | 78 | 4 | 68 | 217 | 1 | 184 | 9.69e-32 | 118 |
MS.gene50429.t1 | AT3G62670 | 32.127 | 221 | 126 | 7 | 27 | 224 | 52 | 271 | 9.11e-31 | 117 |
MS.gene50429.t1 | AT1G49190 | 29.876 | 241 | 134 | 6 | 10 | 217 | 30 | 268 | 2.66e-28 | 110 |
MS.gene50429.t1 | AT1G67710 | 38.764 | 178 | 81 | 3 | 68 | 217 | 1 | 178 | 2.00e-27 | 108 |
MS.gene50429.t1 | AT5G07210 | 30.620 | 258 | 123 | 8 | 14 | 217 | 16 | 271 | 1.13e-23 | 99.0 |
MS.gene50429.t1 | AT5G07210 | 29.699 | 266 | 123 | 9 | 14 | 217 | 16 | 279 | 3.84e-21 | 91.7 |
MS.gene50429.t1 | AT1G67710 | 37.342 | 158 | 71 | 3 | 88 | 217 | 12 | 169 | 4.67e-19 | 85.5 |
MS.gene50429.t1 | AT1G49190 | 33.871 | 124 | 77 | 2 | 10 | 130 | 30 | 151 | 1.49e-18 | 84.3 |
MS.gene50429.t1 | AT1G68210 | 25.188 | 266 | 142 | 6 | 8 | 217 | 7 | 271 | 2.71e-17 | 80.5 |
MS.gene50429.t1 | AT3G04030 | 60.784 | 51 | 19 | 1 | 168 | 217 | 45 | 95 | 6.49e-14 | 70.5 |
MS.gene50429.t1 | AT3G04030 | 60.784 | 51 | 19 | 1 | 168 | 217 | 45 | 95 | 7.34e-14 | 70.1 |
MS.gene50429.t1 | AT5G18240 | 60.784 | 51 | 19 | 1 | 168 | 217 | 45 | 95 | 1.48e-13 | 69.3 |
MS.gene50429.t1 | AT5G18240 | 60.784 | 51 | 19 | 1 | 168 | 217 | 45 | 95 | 1.48e-13 | 69.3 |
MS.gene50429.t1 | AT5G18240 | 60.784 | 51 | 19 | 1 | 168 | 217 | 45 | 95 | 1.58e-13 | 69.3 |
MS.gene50429.t1 | AT5G18240 | 60.784 | 51 | 19 | 1 | 168 | 217 | 45 | 95 | 1.58e-13 | 69.3 |
MS.gene50429.t1 | AT5G18240 | 60.784 | 51 | 19 | 1 | 168 | 217 | 45 | 95 | 1.61e-13 | 69.3 |
MS.gene50429.t1 | AT5G29000 | 43.529 | 85 | 40 | 3 | 134 | 217 | 204 | 281 | 3.56e-13 | 67.8 |
MS.gene50429.t1 | AT5G29000 | 43.529 | 85 | 40 | 3 | 134 | 217 | 204 | 281 | 3.69e-13 | 68.2 |
MS.gene50429.t1 | AT5G29000 | 43.529 | 85 | 40 | 3 | 134 | 217 | 161 | 238 | 3.81e-13 | 68.2 |
MS.gene50429.t1 | AT5G29000 | 43.529 | 85 | 40 | 3 | 134 | 217 | 161 | 238 | 3.81e-13 | 68.2 |
MS.gene50429.t1 | AT3G04030 | 56.000 | 50 | 22 | 0 | 168 | 217 | 45 | 94 | 8.47e-13 | 67.0 |
MS.gene50429.t1 | AT2G01060 | 51.613 | 62 | 29 | 1 | 157 | 217 | 4 | 65 | 5.49e-12 | 64.3 |
MS.gene50429.t1 | AT1G14600 | 60.000 | 50 | 19 | 1 | 170 | 218 | 25 | 74 | 1.88e-11 | 62.4 |
MS.gene50429.t1 | AT2G40260 | 39.785 | 93 | 52 | 2 | 134 | 225 | 51 | 140 | 2.47e-11 | 62.8 |
MS.gene50429.t1 | AT5G44190 | 56.863 | 51 | 22 | 0 | 167 | 217 | 146 | 196 | 7.48e-11 | 61.2 |
MS.gene50429.t1 | AT5G44190 | 56.863 | 51 | 22 | 0 | 167 | 217 | 146 | 196 | 8.19e-11 | 61.2 |
Find 49 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATATTATTAATAATTTAAT+TGG | 0.162228 | 4.4:-79645724 | None:intergenic |
CAAAATGATTCTCAAAATTA+TGG | 0.243357 | 4.4:+79645638 | MS.gene50429:CDS |
ACATGTTGCTAGTCATTTAC+AGG | 0.286115 | 4.4:+79645683 | MS.gene50429:CDS |
AACTGCATCAACGATTTCTA+TGG | 0.292867 | 4.4:+79645491 | MS.gene50429:CDS |
CTCAAAATTATGGATGTTCC+TGG | 0.317981 | 4.4:+79645648 | MS.gene50429:CDS |
CTTGAATTTGTTGGAAAGAA+TGG | 0.358508 | 4.4:+79645023 | MS.gene50429:CDS |
AGAAATCGTTGATGCAGTTC+TGG | 0.372917 | 4.4:-79645487 | None:intergenic |
TTCTGATGCCTTGAATTTGT+TGG | 0.373586 | 4.4:+79645014 | MS.gene50429:CDS |
AAAGTGACTAACCTTGATAA+TGG | 0.378712 | 4.4:-79644856 | None:intergenic |
AATTATGGATGTTCCTGGTT+TGG | 0.386251 | 4.4:+79645653 | MS.gene50429:CDS |
TACATATTGGACTAAGCCTT+TGG | 0.386876 | 4.4:+79645291 | MS.gene50429:CDS |
ATTATGGATGTTCCTGGTTT+GGG | 0.388266 | 4.4:+79645654 | MS.gene50429:CDS |
GGTTGAAGAAAATAGAAAAC+GGG | 0.411991 | 4.4:+79645402 | MS.gene50429:CDS |
ATCAGAAGCTGTGTTACATT+TGG | 0.412873 | 4.4:-79644998 | None:intergenic |
AATGTGGGGCTTGTACATAT+TGG | 0.414028 | 4.4:+79645278 | MS.gene50429:CDS |
AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4.4:+79645370 | MS.gene50429:CDS |
CATTCTTTCCAACAAATTCA+AGG | 0.419108 | 4.4:-79645022 | None:intergenic |
TGTAATCGATTCCATTATCA+AGG | 0.450836 | 4.4:+79644845 | MS.gene50429:CDS |
TTCTGGCGACCAAGACAAAC+GGG | 0.460294 | 4.4:-79645470 | None:intergenic |
AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4.4:-79645135 | None:intergenic |
ATATGAAATTGTTGGAAGCT+TGG | 0.461542 | 4.4:+79645378 | MS.gene50429:CDS |
TTGAGACCAGCAGGGAATGA+TGG | 0.467536 | 4.4:-79644770 | None:intergenic |
AAAAGATACACATGCAAAGA+AGG | 0.470493 | 4.4:+79645447 | MS.gene50429:CDS |
AAGTCATAAGCATCCATGTT+TGG | 0.471983 | 4.4:-79645081 | None:intergenic |
CAAAGAAGGCCCGTTTGTCT+TGG | 0.473177 | 4.4:+79645461 | MS.gene50429:CDS |
GATGTTCCTGGTTTGGGTGT+AGG | 0.487511 | 4.4:+79645660 | MS.gene50429:CDS |
CACTTTCCTCAACTCTATTG+AGG | 0.492388 | 4.4:+79644817 | MS.gene50429:CDS |
GTTCTGGCGACCAAGACAAA+CGG | 0.493157 | 4.4:-79645471 | None:intergenic |
GCAATAACCTTGAGACCAGC+AGG | 0.494358 | 4.4:-79644779 | None:intergenic |
TGGTTGAAGAAAATAGAAAA+CGG | 0.506154 | 4.4:+79645401 | MS.gene50429:CDS |
AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4.4:-79645531 | None:intergenic |
CTATGGGCTGTCAATCAACT+AGG | 0.518108 | 4.4:+79645508 | MS.gene50429:CDS |
ATCATTCCCTGCTGGTCTCA+AGG | 0.520371 | 4.4:+79644772 | MS.gene50429:CDS |
TTATGAAGTCTATTCAATGT+GGG | 0.525603 | 4.4:+79645263 | MS.gene50429:CDS |
TTGACGTCTTCTTCAACCAA+AGG | 0.537631 | 4.4:-79645307 | None:intergenic |
GACAACCCATCATTCCCTGC+TGG | 0.539365 | 4.4:+79644764 | MS.gene50429:CDS |
TGAGACCAGCAGGGAATGAT+GGG | 0.539790 | 4.4:-79644769 | None:intergenic |
TGGCAACATGTTGTCAGAAA+CGG | 0.543020 | 4.4:+79645337 | MS.gene50429:CDS |
ATTATGAAGTCTATTCAATG+TGG | 0.558796 | 4.4:+79645262 | MS.gene50429:CDS |
TGAAATTGTTGGAAGCTTGG+TGG | 0.576315 | 4.4:+79645381 | MS.gene50429:CDS |
GAAAGTGATGTCATGATCAA+TGG | 0.586165 | 4.4:-79644801 | None:intergenic |
ACTGCATCAACGATTTCTAT+GGG | 0.587946 | 4.4:+79645492 | MS.gene50429:CDS |
TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4.4:+79645068 | MS.gene50429:CDS |
ACATGTCCTACACCCAAACC+AGG | 0.611300 | 4.4:-79645666 | None:intergenic |
TATGAAGTCTATTCAATGTG+GGG | 0.614025 | 4.4:+79645264 | MS.gene50429:CDS |
ACATCTCCTCAATAGAGTTG+AGG | 0.625514 | 4.4:-79644823 | None:intergenic |
AAGAAGACGTCAAGAGCATG+TGG | 0.649026 | 4.4:+79645317 | MS.gene50429:CDS |
CAATAACCTTGAGACCAGCA+GGG | 0.699486 | 4.4:-79644778 | None:intergenic |
GTTGAAGAAAATAGAAAACG+GGG | 0.712341 | 4.4:+79645403 | MS.gene50429:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAGAATATGAAATTGT+TGG | + | chr4.4:79645370-79645389 | MS.gene50429:CDS | 15.0% |
!!! | ATAATTTTGAGAATCATTTT+GGG | - | chr4.4:79645639-79645658 | None:intergenic | 15.0% |
!! | AATAAATTCTTACTAATGAC+AGG | - | chr4.4:79645138-79645157 | None:intergenic | 20.0% |
!! | CAAAATGATTCTCAAAATTA+TGG | + | chr4.4:79645638-79645657 | MS.gene50429:CDS | 20.0% |
!!! | CATAATTTTGAGAATCATTT+TGG | - | chr4.4:79645640-79645659 | None:intergenic | 20.0% |
!!! | TTATTTCTTTTTTGTAGTGA+TGG | + | chr4.4:79645216-79645235 | MS.gene50429:intron | 20.0% |
! | ACAAAGCAAAGAAAAGAATT+AGG | - | chr4.4:79645554-79645573 | None:intergenic | 25.0% |
! | ATTATGAAGTCTATTCAATG+TGG | + | chr4.4:79645262-79645281 | MS.gene50429:CDS | 25.0% |
! | TGGTTGAAGAAAATAGAAAA+CGG | + | chr4.4:79645401-79645420 | MS.gene50429:CDS | 25.0% |
! | TTATGAAGTCTATTCAATGT+GGG | + | chr4.4:79645263-79645282 | MS.gene50429:CDS | 25.0% |
AAAAGATACACATGCAAAGA+AGG | + | chr4.4:79645447-79645466 | MS.gene50429:CDS | 30.0% | |
AAAGTGACTAACCTTGATAA+TGG | - | chr4.4:79644859-79644878 | None:intergenic | 30.0% | |
AGGAAAGAATCATACTATCA+AGG | - | chr4.4:79645534-79645553 | None:intergenic | 30.0% | |
ATATGAAATTGTTGGAAGCT+TGG | + | chr4.4:79645378-79645397 | MS.gene50429:CDS | 30.0% | |
CATTCTTTCCAACAAATTCA+AGG | - | chr4.4:79645025-79645044 | None:intergenic | 30.0% | |
GGTTGAAGAAAATAGAAAAC+GGG | + | chr4.4:79645402-79645421 | MS.gene50429:CDS | 30.0% | |
GTTGAAGAAAATAGAAAACG+GGG | + | chr4.4:79645403-79645422 | MS.gene50429:CDS | 30.0% | |
TATGAAGTCTATTCAATGTG+GGG | + | chr4.4:79645264-79645283 | MS.gene50429:CDS | 30.0% | |
! | TGTAATCGATTCCATTATCA+AGG | + | chr4.4:79644845-79644864 | MS.gene50429:CDS | 30.0% |
! | TTTGCATGTGTATCTTTTGA+GGG | - | chr4.4:79645445-79645464 | None:intergenic | 30.0% |
!! | CTTGAATTTGTTGGAAAGAA+TGG | + | chr4.4:79645023-79645042 | MS.gene50429:CDS | 30.0% |
!! | GTCATTTACAGGTTTGTTTT+CGG | + | chr4.4:79645694-79645713 | MS.gene50429:CDS | 30.0% |
!!! | TGAGTTTTAGGGTAACATTT+TGG | - | chr4.4:79645110-79645129 | None:intergenic | 30.0% |
AACTGCATCAACGATTTCTA+TGG | + | chr4.4:79645491-79645510 | MS.gene50429:CDS | 35.0% | |
AAGTCATAAGCATCCATGTT+TGG | - | chr4.4:79645084-79645103 | None:intergenic | 35.0% | |
AATTATGGATGTTCCTGGTT+TGG | + | chr4.4:79645653-79645672 | MS.gene50429:CDS | 35.0% | |
ACATGTTGCTAGTCATTTAC+AGG | + | chr4.4:79645683-79645702 | MS.gene50429:CDS | 35.0% | |
ACTGCATCAACGATTTCTAT+GGG | + | chr4.4:79645492-79645511 | MS.gene50429:CDS | 35.0% | |
ATCAGAAGCTGTGTTACATT+TGG | - | chr4.4:79645001-79645020 | None:intergenic | 35.0% | |
ATTATGGATGTTCCTGGTTT+GGG | + | chr4.4:79645654-79645673 | MS.gene50429:CDS | 35.0% | |
CTCAAAATTATGGATGTTCC+TGG | + | chr4.4:79645648-79645667 | MS.gene50429:CDS | 35.0% | |
GAAAGTGATGTCATGATCAA+TGG | - | chr4.4:79644804-79644823 | None:intergenic | 35.0% | |
TACATATTGGACTAAGCCTT+TGG | + | chr4.4:79645291-79645310 | MS.gene50429:CDS | 35.0% | |
TTCTGATGCCTTGAATTTGT+TGG | + | chr4.4:79645014-79645033 | MS.gene50429:CDS | 35.0% | |
! | CTTTGCATGTGTATCTTTTG+AGG | - | chr4.4:79645446-79645465 | None:intergenic | 35.0% |
! | GACAGGAATGTTGAGTTTTA+GGG | - | chr4.4:79645121-79645140 | None:intergenic | 35.0% |
! | TGACAGGAATGTTGAGTTTT+AGG | - | chr4.4:79645122-79645141 | None:intergenic | 35.0% |
! | TTGCATGTGTATCTTTTGAG+GGG | - | chr4.4:79645444-79645463 | None:intergenic | 35.0% |
!! | TTTACAGGTTTGTTTTCGGA+AGG | + | chr4.4:79645698-79645717 | MS.gene50429:CDS | 35.0% |
AATGTGGGGCTTGTACATAT+TGG | + | chr4.4:79645278-79645297 | MS.gene50429:CDS | 40.0% | |
ACATCTCCTCAATAGAGTTG+AGG | - | chr4.4:79644826-79644845 | None:intergenic | 40.0% | |
AGAAATCGTTGATGCAGTTC+TGG | - | chr4.4:79645490-79645509 | None:intergenic | 40.0% | |
CACTTTCCTCAACTCTATTG+AGG | + | chr4.4:79644817-79644836 | MS.gene50429:CDS | 40.0% | |
TGAAATTGTTGGAAGCTTGG+TGG | + | chr4.4:79645381-79645400 | MS.gene50429:CDS | 40.0% | |
TGATGCTCATATGCCAAACA+TGG | + | chr4.4:79645068-79645087 | MS.gene50429:CDS | 40.0% | |
TGGCAACATGTTGTCAGAAA+CGG | + | chr4.4:79645337-79645356 | MS.gene50429:CDS | 40.0% | |
TTGACGTCTTCTTCAACCAA+AGG | - | chr4.4:79645310-79645329 | None:intergenic | 40.0% | |
CAATAACCTTGAGACCAGCA+GGG | - | chr4.4:79644781-79644800 | None:intergenic | 45.0% | |
! | AAGAAGACGTCAAGAGCATG+TGG | + | chr4.4:79645317-79645336 | MS.gene50429:CDS | 45.0% |
! | CTATGGGCTGTCAATCAACT+AGG | + | chr4.4:79645508-79645527 | MS.gene50429:CDS | 45.0% |
ACATGTCCTACACCCAAACC+AGG | - | chr4.4:79645669-79645688 | None:intergenic | 50.0% | |
CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4.4:79645461-79645480 | MS.gene50429:CDS | 50.0% | |
GCAATAACCTTGAGACCAGC+AGG | - | chr4.4:79644782-79644801 | None:intergenic | 50.0% | |
GTTCTGGCGACCAAGACAAA+CGG | - | chr4.4:79645474-79645493 | None:intergenic | 50.0% | |
TGAGACCAGCAGGGAATGAT+GGG | - | chr4.4:79644772-79644791 | None:intergenic | 50.0% | |
TTCTGGCGACCAAGACAAAC+GGG | - | chr4.4:79645473-79645492 | None:intergenic | 50.0% | |
TTGAGACCAGCAGGGAATGA+TGG | - | chr4.4:79644773-79644792 | None:intergenic | 50.0% | |
! | ATCATTCCCTGCTGGTCTCA+AGG | + | chr4.4:79644772-79644791 | MS.gene50429:CDS | 50.0% |
!! | GATGTTCCTGGTTTGGGTGT+AGG | + | chr4.4:79645660-79645679 | MS.gene50429:CDS | 50.0% |
GACAACCCATCATTCCCTGC+TGG | + | chr4.4:79644764-79644783 | MS.gene50429:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 79644749 | 79645731 | 79644749 | ID=MS.gene50429 |
chr4.4 | mRNA | 79644749 | 79645731 | 79644749 | ID=MS.gene50429.t1;Parent=MS.gene50429 |
chr4.4 | exon | 79644749 | 79644866 | 79644749 | ID=MS.gene50429.t1.exon1;Parent=MS.gene50429.t1 |
chr4.4 | CDS | 79644749 | 79644866 | 79644749 | ID=cds.MS.gene50429.t1;Parent=MS.gene50429.t1 |
chr4.4 | exon | 79644995 | 79645144 | 79644995 | ID=MS.gene50429.t1.exon2;Parent=MS.gene50429.t1 |
chr4.4 | CDS | 79644995 | 79645144 | 79644995 | ID=cds.MS.gene50429.t1;Parent=MS.gene50429.t1 |
chr4.4 | exon | 79645233 | 79645538 | 79645233 | ID=MS.gene50429.t1.exon3;Parent=MS.gene50429.t1 |
chr4.4 | CDS | 79645233 | 79645538 | 79645233 | ID=cds.MS.gene50429.t1;Parent=MS.gene50429.t1 |
chr4.4 | exon | 79645628 | 79645731 | 79645628 | ID=MS.gene50429.t1.exon4;Parent=MS.gene50429.t1 |
chr4.4 | CDS | 79645628 | 79645731 | 79645628 | ID=cds.MS.gene50429.t1;Parent=MS.gene50429.t1 |
Gene Sequence |
Protein sequence |