AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50430.t1 MTR_4g021760 82.484 314 52 2 1 313 1 312 0.0 537
MS.gene50430.t1 MTR_4g021855 75.758 264 60 3 1 263 1 261 1.28e-141 402
MS.gene50430.t1 MTR_4g021845 88.584 219 23 1 1 219 1 217 1.45e-141 399
MS.gene50430.t1 MTR_4g021790 78.926 242 49 1 1 242 1 240 2.84e-134 382
MS.gene50430.t1 MTR_5g055260 61.472 231 60 5 1 231 1 202 4.76e-88 264
MS.gene50430.t1 MTR_4g023980 79.137 139 27 1 55 193 35 171 1.11e-75 229
MS.gene50430.t1 MTR_6g045327 44.444 306 147 9 1 296 1 293 1.01e-67 216
MS.gene50430.t1 MTR_1g032570 45.565 248 102 5 10 226 11 256 2.62e-67 221
MS.gene50430.t1 MTR_8g079940 41.245 257 121 5 9 239 24 276 6.92e-58 195
MS.gene50430.t1 MTR_3g086100 41.393 244 113 4 10 225 13 254 4.10e-57 193
MS.gene50430.t1 MTR_4g121020 41.564 243 114 3 10 226 31 271 1.38e-56 194
MS.gene50430.t1 MTR_4g121020 41.564 243 114 3 10 226 31 271 1.40e-56 194
MS.gene50430.t1 MTR_2g034960 39.850 266 132 4 10 249 29 292 1.85e-56 192
MS.gene50430.t1 MTR_8g105600 41.129 248 124 3 4 231 3 248 1.35e-54 187
MS.gene50430.t1 MTR_1g013170 39.922 258 127 5 7 236 2 259 2.94e-53 182
MS.gene50430.t1 MTR_7g117705 37.121 264 138 4 7 242 2 265 2.98e-50 173
MS.gene50430.t1 MTR_4g131600 35.714 266 145 5 9 252 19 280 7.69e-49 172
MS.gene50430.t1 MTR_3g106220 37.652 247 124 3 10 226 8 254 1.93e-48 171
MS.gene50430.t1 MTR_1g013180 38.618 246 125 4 7 226 153 398 5.93e-47 168
MS.gene50430.t1 MTR_2g450070 35.686 255 129 4 10 229 18 272 2.61e-46 166
MS.gene50430.t1 MTR_2g450070 35.686 255 129 4 10 229 18 272 3.66e-46 166
MS.gene50430.t1 MTR_8g093040 40.433 277 133 9 1 265 1 257 3.83e-46 157
MS.gene50430.t1 MTR_4g131570 33.865 251 138 4 10 233 17 266 1.57e-43 157
MS.gene50430.t1 MTR_4g131580 34.940 249 137 4 9 233 16 263 1.79e-43 157
MS.gene50430.t1 MTR_1g032570 41.799 189 78 4 68 226 1 187 2.80e-42 153
MS.gene50430.t1 MTR_3g102590 38.009 221 106 5 10 226 8 201 9.46e-42 145
MS.gene50430.t1 MTR_3g102600 36.607 224 102 4 4 226 4 188 3.37e-41 143
MS.gene50430.t1 MTR_6g016850 43.750 160 86 2 4 161 3 160 6.35e-41 140
MS.gene50430.t1 MTR_3g102590 37.264 212 104 4 10 219 8 192 3.55e-39 137
MS.gene50430.t1 MTR_3g086100 40.000 185 82 3 68 225 1 183 6.50e-39 143
MS.gene50430.t1 MTR_3g102600 35.160 219 102 4 4 221 4 183 7.17e-38 133
MS.gene50430.t1 MTR_7g026400 34.081 223 122 5 45 249 19 234 6.66e-36 136
MS.gene50430.t1 MTR_0450s0040 29.845 258 168 4 12 259 6 260 9.22e-36 132
MS.gene50430.t1 MTR_3g102600 36.571 175 74 2 52 226 2 139 5.08e-34 123
MS.gene50430.t1 MTR_3g102600 34.706 170 74 2 52 221 2 134 2.08e-30 112
MS.gene50430.t1 MTR_4g121020 39.024 164 73 2 88 226 6 167 4.38e-29 117
MS.gene50430.t1 MTR_8g032710 24.370 357 210 13 12 309 19 374 9.57e-21 92.4
MS.gene50430.t1 MTR_1g013160 33.784 148 73 3 71 193 1 148 3.73e-19 83.2
MS.gene50430.t1 MTR_5g041350 59.259 54 21 1 170 222 15 68 1.48e-15 76.6
MS.gene50430.t1 MTR_2g090675 40.659 91 52 1 138 226 127 217 1.88e-15 76.6
MS.gene50430.t1 MTR_6g032990 59.259 54 21 1 170 222 42 95 7.43e-15 74.7
MS.gene50430.t1 MTR_4g078810 50.000 58 29 0 169 226 157 214 1.51e-14 73.9
MS.gene50430.t1 MTR_7g089010 55.172 58 26 0 169 226 90 147 1.77e-14 72.8
MS.gene50430.t1 MTR_4g064730 53.448 58 27 0 169 226 130 187 2.58e-14 72.8
MS.gene50430.t1 MTR_2g086450 57.407 54 22 1 170 222 45 98 2.84e-14 73.2
MS.gene50430.t1 MTR_7g088070 43.956 91 48 2 168 257 48 136 6.59e-14 71.2
MS.gene50430.t1 MTR_7g088070 51.471 68 30 2 168 232 48 115 1.31e-13 70.1
MS.gene50430.t1 MTR_7g098250 46.512 86 43 3 161 245 253 336 1.80e-13 71.2
MS.gene50430.t1 MTR_4g098870 37.349 83 52 0 169 251 309 391 3.11e-13 70.5
MS.gene50430.t1 MTR_4g098870 37.349 83 52 0 169 251 329 411 3.51e-13 70.5
MS.gene50430.t1 MTR_4g098870 37.349 83 52 0 169 251 348 430 3.55e-13 70.5
MS.gene50430.t1 MTR_4g098870 37.349 83 52 0 169 251 309 391 3.93e-13 70.1
MS.gene50430.t1 MTR_4g098870 37.349 83 52 0 169 251 329 411 4.35e-13 70.1
MS.gene50430.t1 MTR_5g014040 37.349 83 52 0 169 251 310 392 5.29e-13 69.7
MS.gene50430.t1 MTR_5g014040 30.081 123 81 3 10 130 14 133 7.49e-11 63.2
MS.gene50430.t1 MTR_7g115530 53.846 65 27 2 170 231 218 282 6.80e-13 68.6
MS.gene50430.t1 MTR_4g081710 53.704 54 24 1 170 222 17 70 7.74e-13 68.6
MS.gene50430.t1 MTR_7g115530 53.846 65 27 2 170 231 218 282 1.01e-12 68.2
MS.gene50430.t1 MTR_7g115530 53.846 65 27 2 170 231 218 282 1.43e-12 68.2
MS.gene50430.t1 MTR_2g027860 56.522 69 25 3 170 233 49 117 1.92e-12 67.4
MS.gene50430.t1 MTR_7g115530 57.407 54 22 1 170 222 218 271 2.83e-12 67.0
MS.gene50430.t1 MTR_2g016220 47.297 74 33 2 155 222 69 142 3.92e-12 66.6
MS.gene50430.t1 MTR_1g080330 51.562 64 29 2 161 222 165 228 4.54e-12 65.9
MS.gene50430.t1 MTR_2g016220 47.297 74 33 2 155 222 69 142 4.72e-12 66.6
MS.gene50430.t1 MTR_1g080330 53.448 58 26 1 166 222 171 228 5.03e-12 66.2
MS.gene50430.t1 MTR_7g069660 51.786 56 26 1 168 222 69 124 2.64e-11 63.9
MS.gene50430.t1 MTR_2g023580 39.326 89 47 2 168 255 53 135 2.90e-11 62.8
MS.gene50430.t1 MTR_0223s0040 41.772 79 44 2 156 233 5 82 2.95e-11 63.5
MS.gene50430.t1 MTR_4g086835 50.909 55 27 0 168 222 272 326 3.13e-11 63.9
MS.gene50430.t1 MTR_3g450310 49.123 57 28 1 168 223 17 73 4.16e-11 62.0
MS.gene50430.t1 MTR_5g014040 35.227 88 52 1 169 251 310 397 5.78e-11 63.5
MS.gene50430.t1 MTR_5g014040 30.081 123 81 3 10 130 14 133 7.39e-11 63.2
MS.gene50430.t1 MTR_5g014040 35.227 88 52 1 169 251 270 357 6.82e-11 63.2
MS.gene50430.t1 MTR_7g068600 51.429 70 25 3 157 222 5 69 7.60e-11 61.6
MS.gene50430.t1 MTR_7g093030 49.123 57 28 1 167 222 209 265 7.73e-11 62.4
MS.gene50430.t1 MTR_2g016220 46.479 71 32 2 155 219 69 139 9.22e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50430.t1 AT2G01760 40.076 262 116 6 7 231 4 261 2.41e-59 195
MS.gene50430.t1 AT1G67710 40.000 265 127 6 11 243 8 272 7.81e-54 184
MS.gene50430.t1 AT2G01760 36.207 290 116 7 7 231 4 289 1.97e-53 180
MS.gene50430.t1 AT3G16857 38.043 276 125 7 10 239 33 308 4.97e-52 181
MS.gene50430.t1 AT3G16857 38.043 276 125 7 10 239 33 308 6.69e-52 181
MS.gene50430.t1 AT4G31920 36.546 249 145 3 10 248 13 258 2.83e-49 172
MS.gene50430.t1 AT2G25180 39.095 243 118 4 10 226 13 251 1.19e-47 169
MS.gene50430.t1 AT5G58080 38.800 250 127 6 10 236 14 260 1.27e-41 152
MS.gene50430.t1 AT3G16857 36.709 237 104 7 49 239 2 238 5.75e-40 148
MS.gene50430.t1 AT2G01760 38.000 200 84 5 68 231 1 196 1.04e-38 139
MS.gene50430.t1 AT1G67710 39.130 207 95 5 68 243 1 207 2.88e-36 135
MS.gene50430.t1 AT5G49240 32.231 242 137 6 3 219 33 272 8.92e-35 128
MS.gene50430.t1 AT1G49190 29.752 242 141 5 10 222 30 271 6.73e-31 120
MS.gene50430.t1 AT3G62670 31.481 216 127 5 28 222 53 268 7.84e-31 120
MS.gene50430.t1 AT1G67710 37.968 187 85 5 88 243 12 198 1.55e-27 111
MS.gene50430.t1 AT5G07210 27.037 270 143 6 14 231 16 283 1.88e-26 109
MS.gene50430.t1 AT5G07210 26.259 278 143 7 14 231 16 291 5.49e-24 102
MS.gene50430.t1 AT2G27070 24.460 278 153 7 14 236 16 291 1.21e-19 89.7
MS.gene50430.t1 AT1G49190 33.871 124 81 1 10 132 30 153 2.02e-19 89.0
MS.gene50430.t1 AT5G29000 35.862 145 75 6 103 238 166 301 7.54e-16 77.0
MS.gene50430.t1 AT5G29000 34.868 152 81 6 103 245 166 308 1.26e-15 77.4
MS.gene50430.t1 AT5G29000 34.868 152 81 6 103 245 123 265 1.28e-15 77.0
MS.gene50430.t1 AT5G29000 34.868 152 81 6 103 245 123 265 1.28e-15 77.0
MS.gene50430.t1 AT5G59570 49.296 71 33 1 156 226 130 197 1.46e-15 76.3
MS.gene50430.t1 AT5G59570 49.296 71 33 1 156 226 130 197 1.46e-15 76.3
MS.gene50430.t1 AT5G05090 47.191 89 35 3 138 226 61 137 3.25e-15 74.7
MS.gene50430.t1 AT3G04030 59.259 54 21 1 170 222 45 98 6.69e-15 75.1
MS.gene50430.t1 AT3G46640 46.914 81 40 2 146 226 123 200 7.07e-15 74.3
MS.gene50430.t1 AT5G44190 51.667 60 29 0 167 226 144 203 7.48e-15 74.7
MS.gene50430.t1 AT2G40970 53.448 58 27 0 169 226 104 161 7.61e-15 73.2
MS.gene50430.t1 AT3G04030 59.259 54 21 1 170 222 45 98 7.68e-15 74.7
MS.gene50430.t1 AT3G46640 46.914 81 40 2 146 226 123 200 8.73e-15 74.3
MS.gene50430.t1 AT3G46640 46.914 81 40 2 146 226 123 200 8.73e-15 74.3
MS.gene50430.t1 AT5G44190 51.667 60 29 0 167 226 144 203 9.51e-15 74.3
MS.gene50430.t1 AT3G10760 55.172 58 26 0 169 226 104 161 1.09e-14 73.9
MS.gene50430.t1 AT5G18240 59.259 54 21 1 170 222 45 98 1.55e-14 73.9
MS.gene50430.t1 AT5G18240 59.259 54 21 1 170 222 45 98 1.55e-14 73.9
MS.gene50430.t1 AT5G18240 59.259 54 21 1 170 222 45 98 1.75e-14 73.9
MS.gene50430.t1 AT5G18240 59.259 54 21 1 170 222 45 98 1.75e-14 73.9
MS.gene50430.t1 AT5G18240 59.259 54 21 1 170 222 45 98 1.77e-14 73.9
MS.gene50430.t1 AT2G01060 49.398 83 39 2 159 238 4 86 2.58e-14 72.4
MS.gene50430.t1 AT3G04030 56.604 53 23 0 170 222 45 97 4.51e-14 72.8
MS.gene50430.t1 AT3G04450 34.109 129 70 6 109 222 163 291 8.38e-14 71.2
MS.gene50430.t1 AT2G20570 51.724 58 28 0 169 226 152 209 8.54e-14 72.0
MS.gene50430.t1 AT3G04450 51.724 58 27 1 166 222 234 291 2.45e-13 70.5
MS.gene50430.t1 AT3G04450 51.724 58 27 1 166 222 194 251 2.69e-13 70.5
MS.gene50430.t1 AT3G04450 51.724 58 27 1 166 222 194 251 2.69e-13 70.5
MS.gene50430.t1 AT4G28610 61.111 54 20 1 170 222 225 278 3.91e-13 69.7
MS.gene50430.t1 AT2G20570 52.727 55 26 0 172 226 171 225 5.74e-13 69.3
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.14e-13 69.3
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.14e-13 69.3
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.14e-13 69.3
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.14e-13 69.3
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.14e-13 69.3
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.14e-13 69.3
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.48e-13 69.7
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.48e-13 69.7
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.48e-13 69.7
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.48e-13 69.7
MS.gene50430.t1 AT4G18020 39.474 76 43 1 152 227 281 353 6.48e-13 69.7
MS.gene50430.t1 AT1G69580 51.852 54 25 1 170 222 34 87 6.63e-12 65.9
MS.gene50430.t1 AT1G69580 51.852 54 25 1 170 222 34 87 7.31e-12 65.9
MS.gene50430.t1 AT1G14600 56.604 53 22 1 172 223 25 77 2.39e-11 63.5
MS.gene50430.t1 AT3G24120 50.000 68 30 2 170 233 41 108 2.70e-11 63.5
MS.gene50430.t1 AT3G24120 50.000 68 30 2 170 233 41 108 2.79e-11 63.5
MS.gene50430.t1 AT3G13040 47.059 68 33 2 169 233 240 307 4.24e-11 63.9
MS.gene50430.t1 AT3G13040 47.059 68 33 2 169 233 240 307 4.24e-11 63.9
MS.gene50430.t1 AT3G13040 47.059 68 33 2 169 233 240 307 4.24e-11 63.9
MS.gene50430.t1 AT2G40260 43.182 88 46 2 136 222 51 135 6.90e-11 63.2
MS.gene50430.t1 AT2G20400 57.407 54 22 1 170 222 231 284 7.67e-11 62.8
MS.gene50430.t1 AT2G20400 57.407 54 22 1 170 222 231 284 7.83e-11 62.8
MS.gene50430.t1 AT1G25550 47.059 68 35 1 156 222 195 262 8.31e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAAAACTAACCTGTAAA+TGG 0.277475 4.4:-79658114 None:intergenic
ACATGTTGCCAGCCATTTAC+AGG 0.283862 4.4:+79658102 MS.gene50430:CDS
GACATTGTGTGGTCGAATTC+AGG 0.320772 4.4:-79658626 None:intergenic
CTTGAATTTGTTGGAAAGAA+AGG 0.326280 4.4:+79657404 MS.gene50430:CDS
AGAAACCGCTGATGCAGTTC+TGG 0.337779 4.4:-79657903 None:intergenic
TTCTGATGCCTTGAATTTGT+TGG 0.373586 4.4:+79657395 MS.gene50430:CDS
TGAGTTGTAGGGTAACATTT+TGG 0.376494 4.4:-79657488 None:intergenic
GATAAATCATCATCAACATA+TGG 0.380393 4.4:-79658738 None:intergenic
AATGTGGGGCTTGCGAATAT+TGG 0.385194 4.4:+79657688 MS.gene50430:CDS
CGAATATTGGACTAAGCCTT+TGG 0.392176 4.4:+79657701 MS.gene50430:CDS
CTTTCTTTCCAACAAATTCA+AGG 0.396613 4.4:-79657403 None:intergenic
ATCAGAAGCTGTATTGCATT+TGG 0.403201 4.4:-79657379 None:intergenic
TGACAGGAATGTTGAGTTGT+AGG 0.408636 4.4:-79657500 None:intergenic
AATAAAGAATATGAAATTGT+TGG 0.416766 4.4:+79657786 MS.gene50430:CDS
CAAAGAAGGCCCGTTTGTCT+TGG 0.418636 4.4:+79657877 MS.gene50430:CDS
ACGCTAAATTGTGTTTCAAA+AGG 0.431875 4.4:-79658561 None:intergenic
AAAAGAAACACTTGCAAAGA+AGG 0.435703 4.4:+79657863 MS.gene50430:CDS
TTGAGACCGGCTGGGAATGA+TGG 0.453544 4.4:-79657147 None:intergenic
TTCTGGCGACCAAGACAAAC+GGG 0.460294 4.4:-79657886 None:intergenic
AATAAATTCTTACTAATGAC+AGG 0.461511 4.4:-79657516 None:intergenic
TGTAATCGATATCATTATCA+AGG 0.463829 4.4:+79657222 MS.gene50430:CDS
AAGTCATAAACATCCATGTT+TGG 0.465091 4.4:-79657462 None:intergenic
TCAACATATGGGAACAAGTT+GGG 0.468173 4.4:-79658726 None:intergenic
TACTCACTCAATGCCGGAGC+AGG 0.473606 4.4:+79658590 MS.gene50430:CDS
GCAATAACCTTGAGACCGGC+TGG 0.475576 4.4:-79657156 None:intergenic
GTTCTGGCGACCAAGACAAA+CGG 0.493157 4.4:-79657887 None:intergenic
CTATATGCTGTCAATCAACT+AGG 0.499504 4.4:+79657924 MS.gene50430:CDS
AGGAAAGAATCATACTATCA+AGG 0.510494 4.4:-79657947 None:intergenic
ATATGAAATTGTTGGAAGCT+CGG 0.515274 4.4:+79657794 MS.gene50430:CDS
GACAGGAATGTTGAGTTGTA+GGG 0.519779 4.4:-79657499 None:intergenic
ATCATGAAGTCTATTGAATG+TGG 0.526495 4.4:+79657672 MS.gene50430:CDS
AAAACTAACCTGTAAATGGC+TGG 0.535893 4.4:-79658110 None:intergenic
CGACACACGACAACAATGGA+TGG 0.540785 4.4:+79658659 MS.gene50430:CDS
CACTGTCCTCAACTCTATTG+AGG 0.546156 4.4:+79657194 MS.gene50430:CDS
ATAAATCATCATCAACATAT+GGG 0.548211 4.4:-79658737 None:intergenic
AGAAAACTCTGGTCCTGCTC+CGG 0.548712 4.4:-79658603 None:intergenic
TCATGAAGTCTATTGAATGT+GGG 0.549366 4.4:+79657673 MS.gene50430:CDS
ATCATTCCCAGCCGGTCTCA+AGG 0.552068 4.4:+79657149 MS.gene50430:CDS
ATCAACATATGGGAACAAGT+TGG 0.563419 4.4:-79658727 None:intergenic
AGAAGCTACTCACTCAATGC+CGG 0.575449 4.4:+79658584 MS.gene50430:CDS
TGAGACCGGCTGGGAATGAT+GGG 0.577892 4.4:-79657146 None:intergenic
AATTGCAATAACCTTGAGAC+CGG 0.581075 4.4:-79657160 None:intergenic
CTTCATGATAGAACTTGCTG+TGG 0.588533 4.4:-79657658 None:intergenic
TGATGCTCATATGCCAAACA+TGG 0.604750 4.4:+79657449 MS.gene50430:CDS
CATGAAGTCTATTGAATGTG+GGG 0.606058 4.4:+79657674 MS.gene50430:CDS
GGTCGCCAGAACTGCATCAG+CGG 0.609761 4.4:+79657898 MS.gene50430:CDS
ATTGCGACACACGACAACAA+TGG 0.611832 4.4:+79658655 MS.gene50430:CDS
CAATAACCTTGAGACCGGCT+GGG 0.613963 4.4:-79657155 None:intergenic
GACAACCCATCATTCCCAGC+CGG 0.620153 4.4:+79657141 MS.gene50430:CDS
TCGAATTCAGGAGAAAACTC+TGG 0.627173 4.4:-79658614 None:intergenic
TCTTACTACATGTTGCCACA+TGG 0.630006 4.4:-79657742 None:intergenic
ACATCTCCTCAATAGAGTTG+AGG 0.637933 4.4:-79657200 None:intergenic
GCAATTGTCATGACATTGTG+TGG 0.655655 4.4:-79658637 None:intergenic
TGAAATTGTTGGAAGCTCGG+TGG 0.670504 4.4:+79657797 MS.gene50430:CDS
ATGATTTATCATCACTTGTG+TGG 0.696325 4.4:+79658751 MS.gene50430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAATATGAAATTGT+TGG + chr4.4:79657786-79657805 MS.gene50430:CDS 15.0%
!! CATATAGTAAAAAAGTAATT+AGG - chr4.4:79657970-79657989 None:intergenic 15.0%
!!! TGATTTTAAACTGAAATTTA+TGG + chr4.4:79658424-79658443 MS.gene50430:intron 15.0%
!! AAAAATGTTGTTAGTAATGT+CGG - chr4.4:79658697-79658716 None:intergenic 20.0%
!! AATAAATTCTTACTAATGAC+AGG - chr4.4:79657519-79657538 None:intergenic 20.0%
!! ATAAATCATCATCAACATAT+GGG - chr4.4:79658740-79658759 None:intergenic 20.0%
!! TGGTTCAAAAAAATAGAAAA+CGG + chr4.4:79657817-79657836 MS.gene50430:CDS 20.0%
!!! AAAAAAGATTCTGAAAATCA+TGG + chr4.4:79658057-79658076 MS.gene50430:CDS 20.0%
!!! AACATGTTCTTTTTTCATAT+CGG - chr4.4:79658089-79658108 None:intergenic 20.0%
!!! AGAAACTTTAGAATTGAATA+AGG - chr4.4:79657269-79657288 None:intergenic 20.0%
!!! ATGATTTTCAGAATCTTTTT+TGG - chr4.4:79658058-79658077 None:intergenic 20.0%
!!! ATGTTTTTCTCTTAATTTTC+AGG + chr4.4:79658025-79658044 MS.gene50430:intron 20.0%
!!! TGTTTTTCTCTTAATTTTCA+GGG + chr4.4:79658026-79658045 MS.gene50430:intron 20.0%
! AAAATTACAACAACAGAGTT+AGG - chr4.4:79658218-79658237 None:intergenic 25.0%
! AGTAGTATATTATCAACAAG+AGG - chr4.4:79658388-79658407 None:intergenic 25.0%
! GATAAATCATCATCAACATA+TGG - chr4.4:79658741-79658760 None:intergenic 25.0%
! GGTTCAAAAAAATAGAAAAC+GGG + chr4.4:79657818-79657837 MS.gene50430:CDS 25.0%
! GTAGAATGAAAAAATCAAAG+AGG + chr4.4:79658535-79658554 MS.gene50430:CDS 25.0%
! GTTCAAAAAAATAGAAAACG+GGG + chr4.4:79657819-79657838 MS.gene50430:CDS 25.0%
! TGTAATCGATATCATTATCA+AGG + chr4.4:79657222-79657241 MS.gene50430:CDS 25.0%
! TTTAATAACATGCAAGACTA+AGG - chr4.4:79658264-79658283 None:intergenic 25.0%
!! GTTTTTCTCTTAATTTTCAG+GGG + chr4.4:79658027-79658046 MS.gene50430:intron 25.0%
!!! ACATGTTCTTTTTTCATATC+GGG - chr4.4:79658088-79658107 None:intergenic 25.0%
!!! TTATTTCTCTTTTGTAGTGA+TGG + chr4.4:79657626-79657645 MS.gene50430:intron 25.0%
AAAAGAAACACTTGCAAAGA+AGG + chr4.4:79657863-79657882 MS.gene50430:CDS 30.0%
AAGTCATAAACATCCATGTT+TGG - chr4.4:79657465-79657484 None:intergenic 30.0%
ACGCTAAATTGTGTTTCAAA+AGG - chr4.4:79658564-79658583 None:intergenic 30.0%
AGAGGATATATAGAAGCTAA+TGG - chr4.4:79658370-79658389 None:intergenic 30.0%
AGGAAAGAATCATACTATCA+AGG - chr4.4:79657950-79657969 None:intergenic 30.0%
ATATGAAATTGTTGGAAGCT+CGG + chr4.4:79657794-79657813 MS.gene50430:CDS 30.0%
ATCATGAAGTCTATTGAATG+TGG + chr4.4:79657672-79657691 MS.gene50430:CDS 30.0%
ATGATTTATCATCACTTGTG+TGG + chr4.4:79658751-79658770 MS.gene50430:CDS 30.0%
CTTTCTTTCCAACAAATTCA+AGG - chr4.4:79657406-79657425 None:intergenic 30.0%
TCATGAAGTCTATTGAATGT+GGG + chr4.4:79657673-79657692 MS.gene50430:CDS 30.0%
TGCTAAAACTAACCTGTAAA+TGG - chr4.4:79658117-79658136 None:intergenic 30.0%
!! CTTGAATTTGTTGGAAAGAA+AGG + chr4.4:79657404-79657423 MS.gene50430:CDS 30.0%
!!! CATTCTACCTTTTTTCTCTT+CGG - chr4.4:79658523-79658542 None:intergenic 30.0%
AAAACTAACCTGTAAATGGC+TGG - chr4.4:79658113-79658132 None:intergenic 35.0%
AATTGCAATAACCTTGAGAC+CGG - chr4.4:79657163-79657182 None:intergenic 35.0%
AGTAGTGAATTATGCAGTCA+TGG + chr4.4:79658300-79658319 MS.gene50430:intron 35.0%
ATCAACATATGGGAACAAGT+TGG - chr4.4:79658730-79658749 None:intergenic 35.0%
ATCAGAAGCTGTATTGCATT+TGG - chr4.4:79657382-79657401 None:intergenic 35.0%
CATGAAGTCTATTGAATGTG+GGG + chr4.4:79657674-79657693 MS.gene50430:CDS 35.0%
CTATATGCTGTCAATCAACT+AGG + chr4.4:79657924-79657943 MS.gene50430:CDS 35.0%
TAAGCCTTTGGTTGAAAAAG+AGG + chr4.4:79657713-79657732 MS.gene50430:CDS 35.0%
TCAACATATGGGAACAAGTT+GGG - chr4.4:79658729-79658748 None:intergenic 35.0%
TTCTGATGCCTTGAATTTGT+TGG + chr4.4:79657395-79657414 MS.gene50430:CDS 35.0%
! CTTTGCAAGTGTTTCTTTTG+AGG - chr4.4:79657862-79657881 None:intergenic 35.0%
! TGAGTTGTAGGGTAACATTT+TGG - chr4.4:79657491-79657510 None:intergenic 35.0%
!!! TTGACCTCTTTTTCAACCAA+AGG - chr4.4:79657720-79657739 None:intergenic 35.0%
AAAAAGAGGTCAAGACCATG+TGG + chr4.4:79657727-79657746 MS.gene50430:CDS 40.0%
AATCCTAGCCAACTAGACTT+AGG - chr4.4:79658180-79658199 None:intergenic 40.0%
ACATCTCCTCAATAGAGTTG+AGG - chr4.4:79657203-79657222 None:intergenic 40.0%
AGCTCAACCGAAGAGAAAAA+AGG + chr4.4:79658513-79658532 MS.gene50430:CDS 40.0%
CGAATATTGGACTAAGCCTT+TGG + chr4.4:79657701-79657720 MS.gene50430:CDS 40.0%
GCAATTGTCATGACATTGTG+TGG - chr4.4:79658640-79658659 None:intergenic 40.0%
TCGAATTCAGGAGAAAACTC+TGG - chr4.4:79658617-79658636 None:intergenic 40.0%
TCTTACTACATGTTGCCACA+TGG - chr4.4:79657745-79657764 None:intergenic 40.0%
TGATGCTCATATGCCAAACA+TGG + chr4.4:79657449-79657468 MS.gene50430:CDS 40.0%
TGTACGTACCTAAGTCTAGT+TGG + chr4.4:79658169-79658188 MS.gene50430:intron 40.0%
! GACAGGAATGTTGAGTTGTA+GGG - chr4.4:79657502-79657521 None:intergenic 40.0%
! TGACAGGAATGTTGAGTTGT+AGG - chr4.4:79657503-79657522 None:intergenic 40.0%
!! CTTCATGATAGAACTTGCTG+TGG - chr4.4:79657661-79657680 None:intergenic 40.0%
AATGTGGGGCTTGCGAATAT+TGG + chr4.4:79657688-79657707 MS.gene50430:CDS 45.0%
ACATGTTGCCAGCCATTTAC+AGG + chr4.4:79658102-79658121 MS.gene50430:CDS 45.0%
AGAAGCTACTCACTCAATGC+CGG + chr4.4:79658584-79658603 MS.gene50430:CDS 45.0%
ATTGCGACACACGACAACAA+TGG + chr4.4:79658655-79658674 MS.gene50430:CDS 45.0%
CACTGTCCTCAACTCTATTG+AGG + chr4.4:79657194-79657213 MS.gene50430:CDS 45.0%
GACATTGTGTGGTCGAATTC+AGG - chr4.4:79658629-79658648 None:intergenic 45.0%
GTACCTAAGTCTAGTTGGCT+AGG + chr4.4:79658174-79658193 MS.gene50430:intron 45.0%
TGAAATTGTTGGAAGCTCGG+TGG + chr4.4:79657797-79657816 MS.gene50430:CDS 45.0%
AGAAAACTCTGGTCCTGCTC+CGG - chr4.4:79658606-79658625 None:intergenic 50.0%
AGAAACCGCTGATGCAGTTC+TGG - chr4.4:79657906-79657925 None:intergenic 50.0%
CAAAGAAGGCCCGTTTGTCT+TGG + chr4.4:79657877-79657896 MS.gene50430:CDS 50.0%
CAATAACCTTGAGACCGGCT+GGG - chr4.4:79657158-79657177 None:intergenic 50.0%
CGACACACGACAACAATGGA+TGG + chr4.4:79658659-79658678 MS.gene50430:CDS 50.0%
GTTCTGGCGACCAAGACAAA+CGG - chr4.4:79657890-79657909 None:intergenic 50.0%
TTCTGGCGACCAAGACAAAC+GGG - chr4.4:79657889-79657908 None:intergenic 50.0%
ATCATTCCCAGCCGGTCTCA+AGG + chr4.4:79657149-79657168 MS.gene50430:CDS 55.0%
GACAACCCATCATTCCCAGC+CGG + chr4.4:79657141-79657160 MS.gene50430:CDS 55.0%
GCAATAACCTTGAGACCGGC+TGG - chr4.4:79657159-79657178 None:intergenic 55.0%
TACTCACTCAATGCCGGAGC+AGG + chr4.4:79658590-79658609 MS.gene50430:CDS 55.0%
TGAGACCGGCTGGGAATGAT+GGG - chr4.4:79657149-79657168 None:intergenic 55.0%
TTGAGACCGGCTGGGAATGA+TGG - chr4.4:79657150-79657169 None:intergenic 55.0%
GGTCGCCAGAACTGCATCAG+CGG + chr4.4:79657898-79657917 MS.gene50430:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 79657126 79658776 79657126 ID=MS.gene50430
chr4.4 mRNA 79657126 79658776 79657126 ID=MS.gene50430.t1;Parent=MS.gene50430
chr4.4 exon 79657126 79657243 79657126 ID=MS.gene50430.t1.exon1;Parent=MS.gene50430.t1
chr4.4 CDS 79657126 79657243 79657126 ID=cds.MS.gene50430.t1;Parent=MS.gene50430.t1
chr4.4 exon 79657376 79657525 79657376 ID=MS.gene50430.t1.exon2;Parent=MS.gene50430.t1
chr4.4 CDS 79657376 79657525 79657376 ID=cds.MS.gene50430.t1;Parent=MS.gene50430.t1
chr4.4 exon 79657643 79657954 79657643 ID=MS.gene50430.t1.exon3;Parent=MS.gene50430.t1
chr4.4 CDS 79657643 79657954 79657643 ID=cds.MS.gene50430.t1;Parent=MS.gene50430.t1
chr4.4 exon 79658047 79658123 79658047 ID=MS.gene50430.t1.exon4;Parent=MS.gene50430.t1
chr4.4 CDS 79658047 79658123 79658047 ID=cds.MS.gene50430.t1;Parent=MS.gene50430.t1
chr4.4 exon 79658492 79658776 79658492 ID=MS.gene50430.t1.exon5;Parent=MS.gene50430.t1
chr4.4 CDS 79658492 79658776 79658492 ID=cds.MS.gene50430.t1;Parent=MS.gene50430.t1
Gene Sequence

>MS.gene50430

ATGGCAGTTTTCACTGACAACCCATCATTCCCAGCCGGTCTCAAGGTTATTGCAATTGATCATGACATCACTGTCCTCAACTCTATTGAGGAGATGTGTAATCGATATCATTATCAAGGTTTGTTACTTAGTTAATTGCACCTTATTCAATTCTAAAGTTTCTACGTTCTTACTTTTATGTTTTTTCATGTTTGTTTGTTTGTTTGTTTGTCTATTCTTATGTATATTTTTATATGTTTGTTTATTTCAGTTACCAAATGCAATACAGCTTCTGATGCCTTGAATTTGTTGGAAAGAAAGGACTGTTTCGATGTAATGTTGATTGATGCTCATATGCCAAACATGGATGTTTATGACTTTGTCCAAAATGTTACCCTACAACTCAACATTCCTGTCATTAGTAAGAATTTATTCAACTTTTTCATTAAAAGTCTTTAGTTACACATTTCACATGATTTATTCATACATATGTACTTAAGAAGTGTGAACTGACATTAATATTATTTCTCTTTTGTAGTGATGGCTGTTGATTCCACAGCAAGTTCTATCATGAAGTCTATTGAATGTGGGGCTTGCGAATATTGGACTAAGCCTTTGGTTGAAAAAGAGGTCAAGACCATGTGGCAACATGTAGTAAGAATTAGAAACTGTTTGACTGAAAATAAAGAATATGAAATTGTTGGAAGCTCGGTGGTTCAAAAAAATAGAAAACGGGGTAGAGAAGATGCTAATGCCTCAAAAGAAACACTTGCAAAGAAGGCCCGTTTGTCTTGGTCGCCAGAACTGCATCAGCGGTTTCTATATGCTGTCAATCAACTAGGCCTTGATAGTATGATTCTTTCCTAATTACTTTTTTACTATATGCTTTGTTGCATTCTTCAACAGTTGAACTTATGTGCATGTTTTTCTCTTAATTTTCAGGGGCAACGCCAAAAAAGATTCTGAAAATCATGGATGTTCCCGATATGAAAAAAGAACATGTTGCCAGCCATTTACAGGTTAGTTTTAGCATAAATTTTGTTGATTCTGTAAATTTGATATATTGTACGTACCTAAGTCTAGTTGGCTAGGATTGTCAGTGATCTTTTACCTAACTCTGTTGTTGTAATTTTGTAAATCATGTATGTTGTTTATACCTTAGTCTTGCATGTTATTAAAACTATTGAAATTGTAAAGTAGTGAATTATGCAGTCATGGCAGATACTGAAATCTGAGTTTTAGAATAGAATATAAGTATTTCTCCATTAGCTTCTATATATCCTCTTGTTGATAATATACTACTTGTGTTCAATTTTGTGTGATTTTAAACTGAAATTTATGGAGTATTATATATTATTAACATTGTAATTGAAATGTTGCTTTGCAGAAGTATAGAAATTATTTAAAGAGCTCAACCGAAGAGAAAAAAGGTAGAATGAAAAAATCAAAGAGGAGTCCTTTTGAAACACAATTTAGCGTAGAAGCTACTCACTCAATGCCGGAGCAGGACCAGAGTTTTCTCCTGAATTCGACCACACAATGTCATGACAATTGCGACACACGACAACAATGGATGGAAATTAGTGAATCCGACATTACTAACAACATTTTTTCAGACTTGCCCAACTTGTTCCCATATGTTGATGATGATTTATCATCACTTGTGTGGTGA
Protein sequence

>MS.gene50430.t1

MAVFTDNPSFPAGLKVIAIDHDITVLNSIEEMCNRYHYQVTKCNTASDALNLLERKDCFDVMLIDAHMPNMDVYDFVQNVTLQLNIPVIMMAVDSTASSIMKSIECGACEYWTKPLVEKEVKTMWQHVVRIRNCLTENKEYEIVGSSVVQKNRKRGREDANASKETLAKKARLSWSPELHQRFLYAVNQLGLDRATPKKILKIMDVPDMKKEHVASHLQKYRNYLKSSTEEKKGRMKKSKRSPFETQFSVEATHSMPEQDQSFLLNSTTQCHDNCDTRQQWMEISESDITNNIFSDLPNLFPYVDDDLSSLVW