AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50607

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50607.t1 MTR_1g070220 91.787 207 14 3 1 204 1 207 9.49e-139 386
MS.gene50607.t1 MTR_7g096530 59.459 222 66 6 1 202 1 218 1.95e-79 236
MS.gene50607.t1 MTR_7g096610 55.414 157 60 2 12 168 5 151 2.15e-49 160
MS.gene50607.t1 MTR_8g036105 64.103 117 42 0 6 122 9 125 3.16e-48 157
MS.gene50607.t1 MTR_1g070205 70.297 101 30 0 15 115 12 112 1.02e-47 156
MS.gene50607.t1 MTR_6g027710 68.317 101 32 0 15 115 40 140 3.93e-46 152
MS.gene50607.t1 MTR_8g036085 68.317 101 32 0 15 115 23 123 8.03e-46 151
MS.gene50607.t1 MTR_7g074990 63.366 101 37 0 15 115 20 120 1.78e-42 143
MS.gene50607.t1 MTR_7g075230 52.113 142 63 3 13 149 10 151 1.89e-42 142
MS.gene50607.t1 MTR_5g080470 62.887 97 36 0 13 109 5 101 3.97e-42 140
MS.gene50607.t1 MTR_4g083680 52.991 117 54 1 1 117 1 116 2.99e-40 135
MS.gene50607.t1 MTR_2g068760 53.982 113 51 1 5 117 3 114 2.46e-39 132
MS.gene50607.t1 MTR_6g027700 53.279 122 52 1 15 131 7 128 2.95e-38 131
MS.gene50607.t1 MTR_5g083230 59.406 101 40 1 15 115 6 105 1.12e-37 128
MS.gene50607.t1 MTR_3g031660 48.837 129 65 1 11 139 3 130 1.46e-37 129
MS.gene50607.t1 MTR_7g033800 53.659 123 56 1 7 129 3 124 1.51e-37 128
MS.gene50607.t1 MTR_6g005070 47.917 144 58 4 12 150 6 137 2.30e-36 124
MS.gene50607.t1 MTR_3g452660 59.048 105 42 1 11 115 3 106 4.35e-36 128
MS.gene50607.t1 MTR_3g071590 58.416 101 41 1 15 115 8 107 9.24e-36 123
MS.gene50607.t1 MTR_4g105170 62.105 95 35 1 15 109 11 104 2.03e-35 123
MS.gene50607.t1 MTR_5g017950 58.095 105 43 1 11 115 4 107 2.38e-35 127
MS.gene50607.t1 MTR_3g077240 57.407 108 45 1 7 114 2 108 2.47e-35 123
MS.gene50607.t1 MTR_6g005080 54.717 106 47 1 12 117 7 111 2.10e-34 119
MS.gene50607.t1 MTR_5g083960 53.465 101 46 1 15 115 39 138 4.33e-34 120
MS.gene50607.t1 MTR_3g094690 52.727 110 50 2 15 124 47 154 2.06e-33 119
MS.gene50607.t1 MTR_3g071420 50.442 113 54 2 1 113 1 111 4.76e-33 117
MS.gene50607.t1 MTR_3g073690 56.436 101 43 1 15 115 9 108 6.30e-33 117
MS.gene50607.t1 MTR_2g093310 49.091 110 55 1 8 117 26 134 5.77e-32 115
MS.gene50607.t1 MTR_5g083010 51.852 108 50 2 6 113 3 108 7.16e-32 114
MS.gene50607.t1 MTR_3g094690 52.727 110 49 3 15 124 47 153 1.06e-31 115
MS.gene50607.t1 MTR_4g060950 48.000 125 62 3 2 125 11 133 2.04e-31 113
MS.gene50607.t1 MTR_8g040900 61.446 83 31 1 11 93 3 84 7.41e-31 113
MS.gene50607.t1 MTR_5g075020 51.261 119 57 1 15 133 43 160 1.54e-29 109
MS.gene50607.t1 MTR_1g095850 51.961 102 48 1 16 117 73 173 1.59e-29 109
MS.gene50607.t1 MTR_5g075020 51.261 119 57 1 15 133 47 164 2.82e-29 108
MS.gene50607.t1 MTR_5g093010 48.000 100 51 1 16 115 6 104 5.30e-27 100
MS.gene50607.t1 MTR_7g028905 46.000 100 53 1 16 115 6 104 2.24e-26 98.2
MS.gene50607.t1 MTR_8g079660 45.455 99 53 1 15 113 8 105 6.90e-23 93.2
MS.gene50607.t1 MTR_8g079620 41.414 99 57 1 15 113 8 105 1.02e-19 84.0
MS.gene50607.t1 MTR_4g107450 42.718 103 58 1 16 118 11 112 1.34e-19 84.7
MS.gene50607.t1 MTR_2g100020 39.000 100 60 1 16 115 20 118 1.75e-19 84.3
MS.gene50607.t1 MTR_6g011250 45.679 81 42 2 16 95 10 89 3.23e-18 79.0
MS.gene50607.t1 MTR_6g011230 37.755 98 60 1 16 113 12 108 5.31e-17 76.3
MS.gene50607.t1 MTR_6g011200 36.364 99 61 2 16 113 10 107 1.61e-16 75.9
MS.gene50607.t1 MTR_8g079580 33.333 144 77 5 15 152 8 138 3.19e-16 74.3
MS.gene50607.t1 MTR_8g017090 37.864 103 63 1 16 118 13 114 7.45e-16 74.7
MS.gene50607.t1 MTR_4g099230 38.542 96 53 4 16 106 3 97 8.91e-14 66.6
MS.gene50607.t1 MTR_5g085390 33.043 115 75 2 16 129 10 123 4.65e-13 65.9
MS.gene50607.t1 MTR_4g088035 30.682 88 60 1 16 103 7 93 6.34e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50607.t1 AT2G42430 47.368 247 83 7 1 202 1 245 2.70e-63 196
MS.gene50607.t1 AT3G58190 60.317 126 48 1 15 138 11 136 1.10e-48 158
MS.gene50607.t1 AT3G03760 69.811 106 32 0 15 120 51 156 4.82e-48 158
MS.gene50607.t1 AT2G42440 61.345 119 46 0 12 130 4 122 8.76e-48 157
MS.gene50607.t1 AT2G31310 65.049 103 36 0 13 115 5 107 1.34e-46 152
MS.gene50607.t1 AT2G45420 70.408 98 29 0 18 115 40 137 1.32e-44 149
MS.gene50607.t1 AT4G00220 68.367 98 31 0 18 115 20 117 2.58e-44 147
MS.gene50607.t1 AT4G00210 60.909 110 43 0 13 122 9 118 2.86e-44 147
MS.gene50607.t1 AT2G45410 68.367 98 31 0 18 115 19 116 3.34e-43 143
MS.gene50607.t1 AT5G06080 60.952 105 41 0 11 115 3 107 4.11e-43 143
MS.gene50607.t1 AT3G27650 60.000 100 39 1 15 114 39 137 4.65e-38 129
MS.gene50607.t1 AT5G63090 60.194 103 40 1 7 109 3 104 6.33e-36 124
MS.gene50607.t1 AT5G63090 60.194 103 40 1 7 109 3 104 6.33e-36 124
MS.gene50607.t1 AT5G63090 60.194 103 40 1 7 109 3 104 6.33e-36 124
MS.gene50607.t1 AT5G63090 60.194 103 40 1 7 109 3 104 6.33e-36 124
MS.gene50607.t1 AT2G30130 58.416 101 41 1 15 115 8 107 1.76e-35 124
MS.gene50607.t1 AT1G31320 55.208 96 42 1 7 102 5 99 6.15e-34 119
MS.gene50607.t1 AT1G07900 53.398 103 47 1 15 117 33 134 1.20e-33 119
MS.gene50607.t1 AT5G66870 55.238 105 46 1 11 115 3 106 3.61e-33 121
MS.gene50607.t1 AT2G30340 47.934 121 60 2 15 133 53 172 3.81e-33 120
MS.gene50607.t1 AT2G30340 47.934 121 60 2 15 133 52 171 4.28e-33 120
MS.gene50607.t1 AT1G16530 45.968 124 65 2 15 137 14 136 8.73e-33 116
MS.gene50607.t1 AT2G28500 48.696 115 57 2 15 129 55 167 2.01e-32 117
MS.gene50607.t1 AT2G23660 52.885 104 48 1 14 117 4 106 4.11e-32 118
MS.gene50607.t1 AT2G23660 52.885 104 48 1 14 117 4 106 4.11e-32 118
MS.gene50607.t1 AT2G23660 52.885 104 48 1 14 117 4 106 4.11e-32 118
MS.gene50607.t1 AT3G26660 44.248 113 61 2 16 127 6 117 7.56e-31 109
MS.gene50607.t1 AT3G11090 51.429 105 49 2 5 109 2 104 3.93e-30 109
MS.gene50607.t1 AT3G26620 44.340 106 58 1 16 121 6 110 7.16e-30 107
MS.gene50607.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.93e-29 108
MS.gene50607.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.93e-29 108
MS.gene50607.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.93e-29 108
MS.gene50607.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.93e-29 108
MS.gene50607.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.93e-29 108
MS.gene50607.t1 AT2G40470 51.754 114 54 1 15 128 20 132 1.13e-28 106
MS.gene50607.t1 AT2G40470 51.754 114 54 1 15 128 45 157 1.83e-28 106
MS.gene50607.t1 AT3G50510 46.465 99 52 1 15 113 12 109 8.28e-23 91.3
MS.gene50607.t1 AT3G50510 46.465 99 52 1 15 113 12 109 8.28e-23 91.3
MS.gene50607.t1 AT1G72980 35.000 120 77 1 12 131 10 128 3.49e-17 77.0
MS.gene50607.t1 AT3G47870 35.000 100 64 1 16 115 37 135 1.59e-16 76.6
MS.gene50607.t1 AT5G35900 39.000 100 60 1 16 115 6 104 2.67e-16 74.3
MS.gene50607.t1 AT3G13850 38.000 100 61 1 16 115 37 135 2.87e-16 75.5
MS.gene50607.t1 AT1G06280 45.570 79 34 2 16 90 25 98 6.98e-16 73.2

Find 43 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATTATAGATCCTGTTTA+TGG 0.144291 1.2:-53651088 MS.gene50607:CDS
TTCATATTTGTGGGACAAAA+TGG 0.226031 1.2:+53649166 None:intergenic
TAAAAGAATGTCATATGATT+TGG 0.238586 1.2:-53649050 MS.gene50607:CDS
AATGATGGGAAACTATAATT+AGG 0.332280 1.2:-53649002 None:intergenic
AGGGAGCTCTTAGGAGATAT+AGG 0.344167 1.2:+53649142 None:intergenic
TGAATAGCTGCAAATCTTGC+AGG 0.346463 1.2:+53651211 None:intergenic
CATGGACATCCTGAGGATCT+AGG 0.355593 1.2:+53651310 None:intergenic
AAAAGAATGTCATATGATTT+GGG 0.357241 1.2:-53649049 MS.gene50607:CDS
GCAGCTATTCATAAAGTGTT+TGG 0.364830 1.2:-53651199 MS.gene50607:CDS
TGATTTATGGCTTCTACAAA+TGG 0.394946 1.2:-53651340 None:intergenic
GATATAGGGTTCATATTTGT+GGG 0.408424 1.2:+53649157 None:intergenic
ATTGAATCAAGGGAGCTCTT+AGG 0.410397 1.2:+53649133 None:intergenic
CCTAGAGGAGACAGAGAACT+TGG 0.411652 1.2:-53649233 MS.gene50607:CDS
CCAAGTTCTCTGTCTCCTCT+AGG 0.426551 1.2:+53649233 None:intergenic
AACTTGGAGAATCAATGGTC+AGG 0.427708 1.2:-53649217 MS.gene50607:CDS
AGAAACATCTCTCGGAATGA+TGG 0.438279 1.2:-53649017 MS.gene50607:CDS
GGCTCTAGCCCTAGATCCTC+AGG 0.441315 1.2:-53651319 MS.gene50607:CDS
GCAATTGCGGCAACAGCATC+GGG 0.447204 1.2:+53651127 None:intergenic
AGATATAGGGTTCATATTTG+TGG 0.449622 1.2:+53649156 None:intergenic
GGGAGCTCTTAGGAGATATA+GGG 0.451691 1.2:+53649143 None:intergenic
TGTGATACACAACCATAAAC+AGG 0.455984 1.2:+53651076 None:intergenic
TGCTAAAATCAATTGAATCA+AGG 0.464352 1.2:+53649122 None:intergenic
CAGAGAACTTGGAGAATCAA+TGG 0.493895 1.2:-53649222 MS.gene50607:CDS
GCTAAAATCAATTGAATCAA+GGG 0.496109 1.2:+53649123 None:intergenic
AGCAATTGCGGCAACAGCAT+CGG 0.501002 1.2:+53651126 None:intergenic
GAAACATCTCTCGGAATGAT+GGG 0.517494 1.2:-53649016 MS.gene50607:CDS
ATGGACATCCTGAGGATCTA+GGG 0.518326 1.2:+53651311 None:intergenic
AGGAATTTGCATGCCCCACA+TGG 0.523694 1.2:+53651292 None:intergenic
TGGTAAATTCAGTAGCATCT+TGG 0.557512 1.2:+53651162 None:intergenic
ACTTGGAGAATCAATGGTCA+GGG 0.558166 1.2:-53649216 MS.gene50607:CDS
GCATCGGGACGATCATGAGC+TGG 0.597406 1.2:+53651142 None:intergenic
GGGCATGCAAATTCCTCCGT+AGG 0.600566 1.2:-53651285 MS.gene50607:CDS
TTGAGCTTCATAAGCAATTG+CGG 0.600657 1.2:+53651114 None:intergenic
GATCCTCAGGATGTCCATGT+GGG 0.601232 1.2:-53651306 MS.gene50607:CDS
AGATCCTCAGGATGTCCATG+TGG 0.614428 1.2:-53651307 MS.gene50607:CDS
AGCACAACTAATGCAAGTGA+AGG 0.620211 1.2:-53649278 MS.gene50607:CDS
GAGCGGCAAGAAACATCTCT+CGG 0.627630 1.2:-53649025 MS.gene50607:CDS
ATTCAGAAGTACACTTCCTA+CGG 0.633068 1.2:+53651269 None:intergenic
AGTAATTAGTCAAAGCCTAG+AGG 0.635942 1.2:-53649248 MS.gene50607:CDS
TGCCCCACATGGACATCCTG+AGG 0.640571 1.2:+53651303 None:intergenic
TGTCATATGATTTGGGTGAG+CGG 0.650337 1.2:-53649042 MS.gene50607:CDS
CAGAAGTACACTTCCTACGG+AGG 0.660431 1.2:+53651272 None:intergenic
ATCCTCAGGATGTCCATGTG+GGG 0.681917 1.2:-53651305 MS.gene50607:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAGATTAAAATCTA+AGG + chr1.2:53650162-53650181 None:intergenic 10.0%
!! TAAATAAGATTAAAATCTAA+GGG + chr1.2:53650161-53650180 None:intergenic 10.0%
!! TCTATATATAAGAAAAATTT+GGG + chr1.2:53650809-53650828 None:intergenic 10.0%
!! TTCTATATATAAGAAAAATT+TGG + chr1.2:53650810-53650829 None:intergenic 10.0%
!!! AAATATATCATTTTAATTTG+CGG + chr1.2:53649967-53649986 None:intergenic 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG + chr1.2:53649835-53649854 None:intergenic 10.0%
!!! TAATATATAACTTCTTTTTA+AGG - chr1.2:53649643-53649662 MS.gene50607:intron 10.0%
!! AAAATTGTGGAAAAAAATTA+TGG + chr1.2:53649578-53649597 None:intergenic 15.0%
!! TGTGTTAAAATGTTAATTAT+AGG + chr1.2:53649322-53649341 None:intergenic 15.0%
!!! ATTAATTATGTTGATTTTGA+TGG + chr1.2:53650655-53650674 None:intergenic 15.0%
!!! ATTTTGAGAAAAAGAAAAAT+GGG + chr1.2:53650494-53650513 None:intergenic 15.0%
!!! TATTTTGAGAAAAAGAAAAA+TGG + chr1.2:53650495-53650514 None:intergenic 15.0%
!! AAAAAAGCAAAACAAAATTG+TGG + chr1.2:53649591-53649610 None:intergenic 20.0%
!! AAAAGAATGTCATATGATTT+GGG - chr1.2:53651288-53651307 MS.gene50607:CDS 20.0%
!! ATATCGATACAATTAAAGAA+AGG - chr1.2:53650071-53650090 MS.gene50607:intron 20.0%
!! ATGTACCGTTATTTATTTAA+AGG + chr1.2:53650869-53650888 None:intergenic 20.0%
!! CTAATCAAAATACAAAAACA+GGG + chr1.2:53651025-53651044 None:intergenic 20.0%
!! GGATGAAATTTAATAAAGAA+GGG + chr1.2:53650571-53650590 None:intergenic 20.0%
!! GTACTCCTTTAAATAAATAA+CGG - chr1.2:53650861-53650880 MS.gene50607:intron 20.0%
!! GTCATATTAATTGTTCATAT+GGG - chr1.2:53650965-53650984 MS.gene50607:intron 20.0%
!! TAAAAGAATGTCATATGATT+TGG - chr1.2:53651287-53651306 MS.gene50607:CDS 20.0%
!! TGGATGAAATTTAATAAAGA+AGG + chr1.2:53650572-53650591 None:intergenic 20.0%
!! TGTCATATTAATTGTTCATA+TGG - chr1.2:53650964-53650983 MS.gene50607:intron 20.0%
!!! AATAAAGAAGGGTATAATAA+TGG + chr1.2:53650560-53650579 None:intergenic 20.0%
!!! ACAATTTTCTTCATACAAAA+AGG - chr1.2:53650039-53650058 MS.gene50607:intron 20.0%
!!! ACATATATGTGTTCAAATTT+TGG - chr1.2:53649689-53649708 MS.gene50607:intron 20.0%
!!! CAAGAATTACTTAGAATTTT+AGG + chr1.2:53650421-53650440 None:intergenic 20.0%
!!! CTGCAACTTTATTTTTATAT+AGG + chr1.2:53649516-53649535 None:intergenic 20.0%
!!! TTATTGGCTAACATTAATTT+CGG - chr1.2:53650246-53650265 MS.gene50607:intron 20.0%
! AAAAACAATAAATGCTGCAT+TGG + chr1.2:53650535-53650554 None:intergenic 25.0%
! ATAAATAACGGTACATTGAT+CGG - chr1.2:53650873-53650892 MS.gene50607:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - chr1.2:53650603-53650622 MS.gene50607:intron 25.0%
! CCTAATCAAAATACAAAAAC+AGG + chr1.2:53651026-53651045 None:intergenic 25.0%
! GCTAAAATCAATTGAATCAA+GGG + chr1.2:53651217-53651236 None:intergenic 25.0%
! TCAACAAAAGTTAATGTATC+TGG - chr1.2:53650747-53650766 MS.gene50607:intron 25.0%
! TCCACTAACTACAATTAATA+AGG - chr1.2:53650602-53650621 MS.gene50607:intron 25.0%
! TGCTAAAATCAATTGAATCA+AGG + chr1.2:53651218-53651237 None:intergenic 25.0%
! TTCTTATATATAGAACCAGA+AGG - chr1.2:53650815-53650834 MS.gene50607:intron 25.0%
!! TATTGGCTAACATTAATTTC+GGG - chr1.2:53650247-53650266 MS.gene50607:intron 25.0%
!! TTCTTTTATTAGAGTAAGCT+TGG + chr1.2:53651275-53651294 None:intergenic 25.0%
!!! CCTGTTTTTGTATTTTGATT+AGG - chr1.2:53651023-53651042 MS.gene50607:intron 25.0%
!!! TATTTTTGCTTTACAACAAC+AGG - chr1.2:53649284-53649303 MS.gene50607:CDS 25.0%
!!! TTTCATTCAGTTGTTTTCAA+GGG - chr1.2:53649552-53649571 MS.gene50607:intron 25.0%
AAGAGACAATTATTGTGAGA+CGG + chr1.2:53650469-53650488 None:intergenic 30.0%
AGATATAGGGTTCATATTTG+TGG + chr1.2:53651184-53651203 None:intergenic 30.0%
AGGTTTATGCACGATTATTA+AGG + chr1.2:53650683-53650702 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr1.2:53650606-53650625 None:intergenic 30.0%
CCTTGTTCACAACAAAAATA+AGG + chr1.2:53649105-53649124 None:intergenic 30.0%
CGTATTATAGATCCTGTTTA+TGG - chr1.2:53649249-53649268 MS.gene50607:CDS 30.0%
CTGAAATGTCTCTTGTAAAT+AGG + chr1.2:53650727-53650746 None:intergenic 30.0%
GATATAGGGTTCATATTTGT+GGG + chr1.2:53651183-53651202 None:intergenic 30.0%
TACCTATGTATACAACAACA+GGG + chr1.2:53649767-53649786 None:intergenic 30.0%
TCTCTAAATAATACTCCTTC+TGG + chr1.2:53650833-53650852 None:intergenic 30.0%
TGATGAATTCAAGAATGACA+TGG - chr1.2:53650124-53650143 MS.gene50607:intron 30.0%
TTCATATTTGTGGGACAAAA+TGG + chr1.2:53651174-53651193 None:intergenic 30.0%
TTGTTGTATACATAGGTAGT+AGG - chr1.2:53649769-53649788 MS.gene50607:intron 30.0%
!! CTTTCATTCAGTTGTTTTCA+AGG - chr1.2:53649551-53649570 MS.gene50607:intron 30.0%
!! GAAGGAGTATTATTTAGAGA+CGG - chr1.2:53650833-53650852 MS.gene50607:intron 30.0%
!! TCAACAAAAGTTGATGTATC+TGG + chr1.2:53650786-53650805 None:intergenic 30.0%
!! TGGGTTTTATGTTTGACTTA+TGG - chr1.2:53650984-53651003 MS.gene50607:intron 30.0%
!!! CCTTATTTTTGTTGTGAACA+AGG - chr1.2:53649102-53649121 MS.gene50607:CDS 30.0%
AGTAATTAGTCAAAGCCTAG+AGG - chr1.2:53651089-53651108 MS.gene50607:CDS 35.0%
AGTTAGTGGAGTAGTAAAGT+TGG + chr1.2:53650592-53650611 None:intergenic 35.0%
ATCGATCAGTAAGAGTTGTT+TGG - chr1.2:53649935-53649954 MS.gene50607:intron 35.0%
ATGTCTCTTGTAAATAGGAC+CGG + chr1.2:53650722-53650741 None:intergenic 35.0%
CTACCTATGTATACAACAAC+AGG + chr1.2:53649768-53649787 None:intergenic 35.0%
GAGTATTATTTAGAGACGGA+GGG - chr1.2:53650837-53650856 MS.gene50607:intron 35.0%
GTATACATAGGTAGTAGGTT+TGG - chr1.2:53649774-53649793 MS.gene50607:intron 35.0%
TGGTAAATTCAGTAGCATCT+TGG + chr1.2:53649178-53649197 None:intergenic 35.0%
TGTGATACACAACCATAAAC+AGG + chr1.2:53649264-53649283 None:intergenic 35.0%
TTGAGCTTCATAAGCAATTG+CGG + chr1.2:53649226-53649245 None:intergenic 35.0%
! ATTCAGAAGTACACTTCCTA+CGG + chr1.2:53649071-53649090 None:intergenic 35.0%
! GCAGCTATTCATAAAGTGTT+TGG - chr1.2:53649138-53649157 MS.gene50607:CDS 35.0%
! TGATCGGTGGATTTAAATTG+CGG - chr1.2:53650889-53650908 MS.gene50607:intron 35.0%
AACTTGGAGAATCAATGGTC+AGG - chr1.2:53651120-53651139 MS.gene50607:CDS 40.0%
AATAACGGTACATTGATCGG+TGG - chr1.2:53650876-53650895 MS.gene50607:intron 40.0%
ACTTGGAGAATCAATGGTCA+GGG - chr1.2:53651121-53651140 MS.gene50607:CDS 40.0%
AGAAACATCTCTCGGAATGA+TGG - chr1.2:53651320-53651339 MS.gene50607:CDS 40.0%
AGCACAACTAATGCAAGTGA+AGG - chr1.2:53651059-53651078 MS.gene50607:CDS 40.0%
ATCGACGAGTAAGAGTTCTT+TGG - chr1.2:53649907-53649926 MS.gene50607:intron 40.0%
ATTGAATCAAGGGAGCTCTT+AGG + chr1.2:53651207-53651226 None:intergenic 40.0%
CAATAAAATCTCAGCCTGAC+CGG + chr1.2:53650232-53650251 None:intergenic 40.0%
CAGAGAACTTGGAGAATCAA+TGG - chr1.2:53651115-53651134 MS.gene50607:CDS 40.0%
CTCCCTGTTGTTGTATACAT+AGG - chr1.2:53649762-53649781 MS.gene50607:intron 40.0%
GAAACATCTCTCGGAATGAT+GGG - chr1.2:53651321-53651340 MS.gene50607:CDS 40.0%
GACAATTATTGTGAGACGGA+TGG + chr1.2:53650465-53650484 None:intergenic 40.0%
GCAGTGCAAACGTACTATAA+AGG + chr1.2:53650923-53650942 None:intergenic 40.0%
TGAATAGCTGCAAATCTTGC+AGG + chr1.2:53649129-53649148 None:intergenic 40.0%
! GGAGTATTATTTAGAGACGG+AGG - chr1.2:53650836-53650855 MS.gene50607:intron 40.0%
! TGTCATATGATTTGGGTGAG+CGG - chr1.2:53651295-53651314 MS.gene50607:CDS 40.0%
AGGGAGCTCTTAGGAGATAT+AGG + chr1.2:53651198-53651217 None:intergenic 45.0%
ATGGACATCCTGAGGATCTA+GGG + chr1.2:53649029-53649048 None:intergenic 45.0%
CCTTAAACGACTACTTCCTC+CGG - chr1.2:53650700-53650719 MS.gene50607:intron 45.0%
GGGAGCTCTTAGGAGATATA+GGG + chr1.2:53651197-53651216 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG + chr1.2:53650719-53650738 None:intergenic 45.0%
! CGGTCAGGCTGAGATTTTAT+TGG - chr1.2:53650230-53650249 MS.gene50607:intron 45.0%
AGATCCTCAGGATGTCCATG+TGG - chr1.2:53649030-53649049 MS.gene50607:CDS 50.0%
AGCAATTGCGGCAACAGCAT+CGG + chr1.2:53649214-53649233 None:intergenic 50.0%
AGGAATTTGCATGCCCCACA+TGG + chr1.2:53649048-53649067 None:intergenic 50.0%
ATCCTCAGGATGTCCATGTG+GGG - chr1.2:53649032-53649051 MS.gene50607:CDS 50.0%
CATGGACATCCTGAGGATCT+AGG + chr1.2:53649030-53649049 None:intergenic 50.0%
CCAAGTTCTCTGTCTCCTCT+AGG + chr1.2:53651107-53651126 None:intergenic 50.0%
CCGGAGGAAGTAGTCGTTTA+AGG + chr1.2:53650703-53650722 None:intergenic 50.0%
CCTAGAGGAGACAGAGAACT+TGG - chr1.2:53651104-53651123 MS.gene50607:CDS 50.0%
GAGCGGCAAGAAACATCTCT+CGG - chr1.2:53651312-53651331 MS.gene50607:CDS 50.0%
GATCCTCAGGATGTCCATGT+GGG - chr1.2:53649031-53649050 MS.gene50607:CDS 50.0%
TCAGCCTGACCGGAAATCAT+GGG + chr1.2:53650222-53650241 None:intergenic 50.0%
! CAGAAGTACACTTCCTACGG+AGG + chr1.2:53649068-53649087 None:intergenic 50.0%
ACCCACCACCCCATGATTTC+CGG - chr1.2:53650210-53650229 MS.gene50607:intron 55.0%
ACCGGAAATCATGGGGTGGT+GGG + chr1.2:53650214-53650233 None:intergenic 55.0%
CAGCCTGACCGGAAATCATG+GGG + chr1.2:53650221-53650240 None:intergenic 55.0%
CTCAGCCTGACCGGAAATCA+TGG + chr1.2:53650223-53650242 None:intergenic 55.0%
GCAATTGCGGCAACAGCATC+GGG + chr1.2:53649213-53649232 None:intergenic 55.0%
GGGCATGCAAATTCCTCCGT+AGG - chr1.2:53649052-53649071 MS.gene50607:CDS 55.0%
CCACCCCATGATTTCCGGTC+AGG - chr1.2:53650215-53650234 MS.gene50607:intron 60.0%
CCTGACCGGAAATCATGGGG+TGG + chr1.2:53650218-53650237 None:intergenic 60.0%
GACCGGAAATCATGGGGTGG+TGG + chr1.2:53650215-53650234 None:intergenic 60.0%
GCATCGGGACGATCATGAGC+TGG + chr1.2:53649198-53649217 None:intergenic 60.0%
TGCCCCACATGGACATCCTG+AGG + chr1.2:53649037-53649056 None:intergenic 60.0%
! GGCTCTAGCCCTAGATCCTC+AGG - chr1.2:53649018-53649037 MS.gene50607:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 53649003 53651356 53649003 ID=MS.gene50607
chr1.2 mRNA 53649003 53651356 53649003 ID=MS.gene50607.t1;Parent=MS.gene50607
chr1.2 exon 53651054 53651356 53651054 ID=MS.gene50607.t1.exon1;Parent=MS.gene50607.t1
chr1.2 CDS 53651054 53651356 53651054 ID=cds.MS.gene50607.t1;Parent=MS.gene50607.t1
chr1.2 exon 53649003 53649314 53649003 ID=MS.gene50607.t1.exon2;Parent=MS.gene50607.t1
chr1.2 CDS 53649003 53649314 53649003 ID=cds.MS.gene50607.t1;Parent=MS.gene50607.t1
Gene Sequence

>MS.gene50607

ATGGCTTCTACAAATGGCTCTAGCCCTAGATCCTCAGGATGTCCATGTGGGGCATGCAAATTCCTCCGTAGGAAGTGTACTTCTGAATGCATATTTGCACCTTATTTTTGTTGTGAACAAGGACCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCCAAGATGCTACTGAATTTACCAGCTCATGATCGTCCCGATGCTGTTGCCGCAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGTTGTGTATCACATATTTTTGCTTTACAACAACAGGTACGCTTTCAAACCTATAATTAACATTTTAACACAATAGTCACATAGAACTAAATTAATCTTTATTTTACGATCTTCTATTAATAGAGTTAAATATATTCTTTTGAAGTTACAATCTCAAATTCTTATACTTGAGCTGACATACGATTAATATAGAATTTTATTAATGAACTTTGAAAAAATAACAAGCAAATTTTTCAAAAACTTCCTATATAAAAATAAAGTTGCAGTTTGTAAATTATATTCTTTCATTCAGTTGTTTTCAAGGGCCATAATTTTTTTCCACAATTTTGTTTTGCTTTTTTAGTATATATGATGTGAATGAATGTTATATAATTAATATATAACTTCTTTTTAAGGAAATTAATATTTAATTTATACATACATATATGTGTTCAAATTTTGGAATCGATTGAGTCAGATTGATTTTTCATCATACTCATGTCTTGTCTTTTTCTCCCTGTTGTTGTATACATAGGTAGTAGGTTTGGCTGCTATATATTAGACATCAAGATCAGCTAGCAGTCCATTAACAAATTTTAATTGATTATAAATTTACTTATGTCAATTATCGACTAGTAAGACTTTTCTTTTTAACAAGATCGACGAGTAAGAGTTCTTTGGACAAAATCGATCAGTAAGAGTTGTTTGGACAAAACCGCAAATTAAAATGATATATTTTTTGTGAGTGTTTAAGTTGTTGTAGTTCGAAAGTAGATCAAAGTGAAAACTCACAATTTTCTTCATACAAAAAGGTATATTTCTATATCGATACAATTAAAGAAAGGAAAATGCTAGATATCAAGAATGAATTTTCTTGATGAATTCAAGAATGACATGGCAGAATAATCACCCTTAGATTTTAATCTTATTTATTAAAGTTTCATAAAAAAAAATACATAACACCCACCACCCCATGATTTCCGGTCAGGCTGAGATTTTATTGGCTAACATTAATTTCGGGACAATTTCTTGATAAAATCTTTCTTGATAAATAGCATTGCTCTTAAAGAAATCTAAATTTTCTAATACAGTCATAATTAAAACTCGCTTCTTTTTTTCTTCTTTTACAATTTTCTTTGATTAAAGCAATTCTAGACTTTTTAGTTTTACCTAAAATTCTAAGTAATTCTTGATTTATCTAATTTCAATTACTCCATCCGTCTCACAATAATTGTCTCTTTACCCATTTTTCTTTTTCTCAAAATAATTATCACTTTAGAATACCAATGCAGCATTTATTGTTTTTTTCCATTATTATACCCTTCTTTATTAAATTTCATCCAACTTTACTACTCCACTAACTACAATTAATAAGGGTGTTTTAGTAAATGATATTAATTTTACCATCAAAATCAACATAATTAATCATTTCCTTAATAATCGTGCATAAACCTTAAACGACTACTTCCTCCGGTCCTATTTACAAGAGACATTTCAGTCAACAAAAGTTAATGTATCTGGTCTAATTTTTTAACCAGATACATCAACTTTTGTTGACCCAAATTTTTCTTATATATAGAACCAGAAGGAGTATTATTTAGAGACGGAGGGAGTACTCCTTTAAATAAATAACGGTACATTGATCGGTGGATTTAAATTGCGGATGCGTAACCTTTATAGTACGTTTGCACTGCGAACGTTGAATATATACTTTTTGTCATATTAATTGTTCATATGGGTTTTATGTTTGACTTATGGTTTTTGAAATATGCACCCTGTTTTTGTATTTTGATTAGGTAGCAAGCTTGCAAGCACAACTAATGCAAGTGAAGGCACAACAAGTAATTAGTCAAAGCCTAGAGGAGACAGAGAACTTGGAGAATCAATGGTCAGGGAATGTTGTTAAACAACAATTAATCAATCCATTTTGTCCCACAAATATGAACCCTATATCTCCTAAGAGCTCCCTTGATTCAATTGATTTTAGCAGCTGCAGCATCAATGATGTAATGAGTATACAATGCCAAGCTTACTCTAATAAAAGAATGTCATATGATTTGGGTGAGCGGCAAGAAACATCTCTCGGAATGATGGGAAACTATAATTAG
Protein sequence

>MS.gene50607.t1

MASTNGSSPRSSGCPCGACKFLRRKCTSECIFAPYFCCEQGPARFAAIHKVFGASNVSKMLLNLPAHDRPDAVAAIAYEAQARIIDPVYGCVSHIFALQQQVASLQAQLMQVKAQQVISQSLEETENLENQWSGNVVKQQLINPFCPTNMNPISPKSSLDSIDFSSCSINDVMSIQCQAYSNKRMSYDLGERQETSLGMMGNYN