AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50698

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50698.t1 MTR_4g072090 92.992 528 12 7 1 525 1 506 0.0 969
MS.gene50698.t1 MTR_4g072090 93.598 453 13 5 1 450 1 440 0.0 842
MS.gene50698.t1 MTR_1g023690 47.131 488 177 16 48 485 46 502 7.20e-92 291
MS.gene50698.t1 MTR_3g467120 68.841 138 34 1 355 492 162 290 7.75e-49 173
MS.gene50698.t1 MTR_5g075390 65.942 138 38 1 331 468 129 257 2.70e-48 171
MS.gene50698.t1 MTR_2g099050 43.609 266 93 7 217 476 109 323 3.03e-48 173
MS.gene50698.t1 MTR_6g034945 57.143 175 67 3 289 462 76 243 4.76e-48 169
MS.gene50698.t1 MTR_3g094020 63.768 138 42 1 331 468 77 206 5.52e-47 166
MS.gene50698.t1 MTR_2g090900 49.474 95 48 0 368 462 189 283 4.64e-20 91.7
MS.gene50698.t1 MTR_2g090900 49.474 95 48 0 368 462 189 283 6.90e-20 91.7
MS.gene50698.t1 MTR_4g079500 37.410 139 64 2 324 462 171 286 1.24e-19 90.5
MS.gene50698.t1 MTR_0405s0060 77.193 57 13 0 345 401 99 155 1.92e-19 87.8
MS.gene50698.t1 MTR_1g099030 35.135 185 103 5 324 502 76 249 2.57e-15 77.0
MS.gene50698.t1 MTR_8g088650 37.705 122 70 2 341 462 206 321 1.03e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50698.t1 AT4G38900 58.108 518 138 26 19 491 29 512 6.48e-158 461
MS.gene50698.t1 AT4G38900 58.108 518 138 26 19 491 29 512 6.48e-158 461
MS.gene50698.t1 AT4G38900 57.443 524 138 27 19 491 29 518 2.48e-155 454
MS.gene50698.t1 AT2G21230 53.863 453 159 16 88 507 72 507 2.17e-125 377
MS.gene50698.t1 AT2G21230 53.863 453 159 16 88 507 72 507 2.17e-125 377
MS.gene50698.t1 AT2G21230 52.941 459 160 17 88 507 72 513 3.90e-122 369
MS.gene50698.t1 AT2G21230 54.798 396 129 16 88 450 72 450 5.28e-112 340
MS.gene50698.t1 AT2G40620 64.583 144 50 1 325 468 104 246 2.01e-49 174
MS.gene50698.t1 AT1G06850 66.418 134 43 1 341 472 117 250 1.37e-48 171
MS.gene50698.t1 AT2G31370 44.314 255 94 6 214 468 93 299 1.17e-47 170
MS.gene50698.t1 AT2G31370 44.314 255 94 6 214 468 93 299 2.12e-47 170
MS.gene50698.t1 AT2G31370 44.314 255 94 6 214 468 93 299 2.12e-47 170
MS.gene50698.t1 AT2G31370 44.314 255 94 6 214 468 93 299 2.12e-47 170
MS.gene50698.t1 AT2G31370 44.314 255 94 6 214 468 93 299 2.12e-47 170
MS.gene50698.t1 AT2G31370 44.314 255 94 6 214 468 93 299 2.12e-47 170
MS.gene50698.t1 AT2G31370 44.314 255 94 6 214 468 93 299 2.12e-47 170
MS.gene50698.t1 AT1G06070 66.412 131 42 1 345 473 185 315 1.15e-46 168
MS.gene50698.t1 AT1G43700 52.151 186 74 4 296 468 109 292 4.17e-46 165
MS.gene50698.t1 AT2G12940 42.623 183 97 3 282 464 68 242 2.20e-37 140
MS.gene50698.t1 AT2G13150 41.899 179 96 3 284 462 71 241 4.13e-37 138
MS.gene50698.t1 AT2G12900 40.714 140 75 1 334 465 72 211 9.66e-30 118
MS.gene50698.t1 AT1G06850 65.517 87 28 1 341 425 117 203 1.55e-25 105
MS.gene50698.t1 AT3G58120 48.421 95 49 0 368 462 200 294 4.94e-20 91.7
MS.gene50698.t1 AT2G42380 48.421 95 49 0 368 462 184 278 1.40e-19 90.1
MS.gene50698.t1 AT2G42380 47.619 84 44 0 368 451 184 267 9.18e-17 80.9
MS.gene50698.t1 AT3G58120 47.561 82 43 0 368 449 200 281 4.12e-16 79.3
MS.gene50698.t1 AT2G21235 37.107 159 80 4 307 462 309 450 6.39e-16 80.9
MS.gene50698.t1 AT2G42380 44.211 95 42 1 368 462 184 267 3.85e-14 73.9
MS.gene50698.t1 AT1G58110 42.857 84 48 0 379 462 238 321 8.64e-12 67.4
MS.gene50698.t1 AT1G58110 42.857 84 48 0 379 462 238 321 8.64e-12 67.4

Find 127 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTATTTCAGGATAT+TGG 0.231921 4.3:-33720417 MS.gene50698:intron
TGCACAACTTACTTTGTTGC+AGG 0.290633 4.3:-33720291 MS.gene50698:intron
ATTTCAGGATATTGGCTAAT+AGG 0.291092 4.3:-33720409 MS.gene50698:intron
TGGTGAAAAGGGAAACAAAT+TGG 0.294655 4.3:-33721049 MS.gene50698:CDS
GGATCATGCTGACGTTTCTA+TGG 0.316784 4.3:-33721258 MS.gene50698:CDS
GGCATTTGCGGCCGTGAAAC+CGG 0.329642 4.3:+33721401 None:intergenic
GTTGATGTCACCTGGTAATT+CGG 0.335072 4.3:-33720643 MS.gene50698:CDS
ATCTGAGAGTAAGGTGAAAT+AGG 0.358249 4.3:+33721437 None:intergenic
TGCTGTTGTTGGAACATCAT+AGG 0.362730 4.3:+33718208 None:intergenic
GCTGATGCTGATGCTGTTGT+TGG 0.363621 4.3:+33718197 None:intergenic
GGAACTTCAACTCACTATTC+TGG 0.380487 4.3:+33719973 None:intergenic
GGGATCTGGTGTGGGTGTGA+TGG 0.386572 4.3:+33721461 None:intergenic
TGGTGATAATCGCGATGATT+TGG 0.392741 4.3:-33720898 MS.gene50698:CDS
CTAATTCGTCTGTGGTGAAA+AGG 0.394202 4.3:-33721061 MS.gene50698:CDS
TTGAAGATGCCTCCTTCGCC+TGG 0.396610 4.3:-33720669 MS.gene50698:CDS
AAAGAATGAGTTAAAGCAAT+AGG 0.398703 4.3:-33718107 None:intergenic
TTGCTACAGCTGAGCTGAAT+GGG 0.408125 4.3:-33718276 MS.gene50698:CDS
TCTAACAGTGATATTCCGTT+TGG 0.413476 4.3:-33721149 MS.gene50698:CDS
GCCGGAGTTGAAGAAAATTA+TGG 0.416398 4.3:-33720565 MS.gene50698:CDS
TTGATGTCACCTGGTAATTC+GGG 0.418606 4.3:-33720642 MS.gene50698:CDS
GAAGGGAATAAGAGAAGTGC+AGG 0.419487 4.3:-33720777 MS.gene50698:CDS
CCTGTTGTTCCATGGATTGA+AGG 0.422833 4.3:+33719949 None:intergenic
GATAGTATGCAGAGGAGGGA+AGG 0.429594 4.3:-33720795 MS.gene50698:CDS
CCTTCAATCCATGGAACAAC+AGG 0.431813 4.3:-33719949 MS.gene50698:CDS
CAGCACCTCTTAGCCCGCTT+CGG 0.433321 4.3:+33720507 None:intergenic
ATCTGGTGTGGGTGTGATGG+TGG 0.439152 4.3:+33721464 None:intergenic
AAATAGGTGGGATCTGGTGT+GGG 0.439432 4.3:+33721453 None:intergenic
CTTTAACTCATTCTTTGAGT+TGG 0.442907 4.3:+33718114 None:intergenic
ACAACAAATGAACAATCATA+TGG 0.450801 4.3:-33721576 MS.gene50698:CDS
GTACTATGCGACGGCATTTG+CGG 0.455092 4.3:+33721389 None:intergenic
TGCGGAATCATGCAGTTAGA+AGG 0.459177 4.3:+33718244 None:intergenic
TTCGGGAATGGTGAGTTTAG+TGG 0.468448 4.3:-33720588 MS.gene50698:CDS
AGAGTAGTGTTAATGAGAGT+GGG 0.468643 4.3:-33720818 MS.gene50698:CDS
GTGGGGATAGTATGCAGAGG+AGG 0.468795 4.3:-33720800 MS.gene50698:CDS
AAGGTGAAATAGGTGGGATC+TGG 0.472913 4.3:+33721447 None:intergenic
GGTGAAAAGGGAAACAAATT+GGG 0.475168 4.3:-33721048 MS.gene50698:CDS
GAAGTTCCGCCTTCAATCCA+TGG 0.476046 4.3:-33719958 MS.gene50698:CDS
TCATCCACAACTTCACCTTC+CGG 0.477852 4.3:+33720987 None:intergenic
GAAGAAATCGTCGTTGTCGC+CGG 0.482957 4.3:-33721006 MS.gene50698:CDS
GAAATAGGTGGGATCTGGTG+TGG 0.483403 4.3:+33721452 None:intergenic
ATAGTATGCAGAGGAGGGAA+GGG 0.491140 4.3:-33720794 MS.gene50698:CDS
TGATTATTCATCTGAGAGTA+AGG 0.492306 4.3:+33721428 None:intergenic
GAGAGTAGTGTTAATGAGAG+TGG 0.492697 4.3:-33720819 MS.gene50698:CDS
ATTGCTACAGCTGAGCTGAA+TGG 0.502115 4.3:-33718277 MS.gene50698:CDS
GCGAGTGGAACGAAGACTAA+TGG 0.504671 4.3:-33720867 MS.gene50698:CDS
TCACCTGGTAATTCGGGTGA+TGG 0.506440 4.3:-33720636 MS.gene50698:CDS
GCATTTGCGGCCGTGAAACC+GGG 0.507657 4.3:+33721402 None:intergenic
TAATTCGTCTGTGGTGAAAA+GGG 0.510411 4.3:-33721060 MS.gene50698:CDS
CGTTGATTCCGCTGAGAGGA+AGG 0.510892 4.3:-33721097 MS.gene50698:CDS
TGCTATGGCTGATCCGAAGC+GGG 0.511052 4.3:-33720520 MS.gene50698:CDS
AGCAGAAATCAAAGAGGAGG+TGG 0.514151 4.3:-33721491 MS.gene50698:CDS
TTTAGTTTGGAGTTCGGGAA+TGG 0.514273 4.3:-33720600 MS.gene50698:CDS
TGGGGATAGTATGCAGAGGA+GGG 0.518255 4.3:-33720799 MS.gene50698:CDS
CTAGCAGCAAACGGAGGTAA+AGG 0.521419 4.3:+33721209 None:intergenic
TCGGGAATGGTGAGTTTAGT+GGG 0.525925 4.3:-33720587 MS.gene50698:CDS
CTGATCCGAAGCGGGCTAAG+AGG 0.529672 4.3:-33720512 MS.gene50698:intron
GGGAATAAGAGAAGTGCAGG+AGG 0.532585 4.3:-33720774 MS.gene50698:CDS
CCTGGAGGGTTGATGTCACC+TGG 0.533911 4.3:-33720651 MS.gene50698:CDS
ATAATCAGATCCCGGTTTCA+CGG 0.535436 4.3:-33721412 MS.gene50698:CDS
CTGAACCTTGTGTTCTAGCT+CGG 0.538171 4.3:+33720343 None:intergenic
TTCCCATCACCCGAATTACC+AGG 0.548352 4.3:+33720633 None:intergenic
AATCTTCAGTCTTTGAACTT+CGG 0.549225 4.3:+33718297 None:intergenic
CACCTGGTAATTCGGGTGAT+GGG 0.550364 4.3:-33720635 MS.gene50698:CDS
AGATGCCTCCTTCGCCTGGA+GGG 0.550640 4.3:-33720665 MS.gene50698:CDS
GAAGGGTTTCTAGCAGCAAA+CGG 0.555470 4.3:+33721200 None:intergenic
GCTGTTGTTGGAACATCATA+GGG 0.558278 4.3:+33718209 None:intergenic
CATCAACAACAGCAGCAGAA+TGG 0.558598 4.3:-33718142 MS.gene50698:CDS
GACATCAACCCTCCAGGCGA+AGG 0.565228 4.3:+33720657 None:intergenic
GAGTAGTGTTAATGAGAGTG+GGG 0.567227 4.3:-33720817 MS.gene50698:CDS
CCAGGTGACATCAACCCTCC+AGG 0.571668 4.3:+33720651 None:intergenic
TCGCGATGATTTGGACAGTA+GGG 0.575016 4.3:-33720889 MS.gene50698:CDS
GAATGGTGAGTTTAGTGGGC+CGG 0.577577 4.3:-33720583 MS.gene50698:CDS
GAAGATTCGCGAAACGTGCA+AGG 0.577802 4.3:+33721290 None:intergenic
GAGAGGCGGAAGAGAGTCGA+GGG 0.579406 4.3:+33721316 None:intergenic
ACATTATAGAAGTGTTTCGA+TGG 0.580671 4.3:-33720730 MS.gene50698:CDS
AAGATGCCTCCTTCGCCTGG+AGG 0.581524 4.3:-33720666 MS.gene50698:CDS
TGAGAGTAAGGTGAAATAGG+TGG 0.582251 4.3:+33721440 None:intergenic
CATTTCCGAGCTAGAACACA+AGG 0.584550 4.3:-33720348 MS.gene50698:CDS
GAGAGTAAGGTGAAATAGGT+GGG 0.588611 4.3:+33721441 None:intergenic
ATCAACCCTCCAGGCGAAGG+AGG 0.593463 4.3:+33720660 None:intergenic
ATCGCGATGATTTGGACAGT+AGG 0.595138 4.3:-33720890 MS.gene50698:CDS
CTTCTATAATGTCTCGTAGT+CGG 0.597005 4.3:+33720741 None:intergenic
AACGTGCAAGGGCTGAGAGG+CGG 0.597136 4.3:+33721302 None:intergenic
AGGGAAACAAATTGGGAACA+TGG 0.600397 4.3:-33721041 MS.gene50698:CDS
CTTCCTCTCAGCGGAATCAA+CGG 0.601600 4.3:+33721098 None:intergenic
AAAACAGTAGAAAATCCAAA+CGG 0.603502 4.3:+33721134 None:intergenic
AAATCGTCGTTGTCGCCGGA+AGG 0.604451 4.3:-33721002 MS.gene50698:CDS
TCAGATGAATAATCAGATCC+CGG 0.607400 4.3:-33721420 MS.gene50698:CDS
TGAGAGGCGGAAGAGAGTCG+AGG 0.608647 4.3:+33721315 None:intergenic
AGAGTGGGGATAGTATGCAG+AGG 0.609195 4.3:-33720803 MS.gene50698:CDS
AGTAGCAGAAATCAAAGAGG+AGG 0.611642 4.3:-33721494 MS.gene50698:CDS
TCGCGAATCTTCTTCCACGT+CGG 0.615499 4.3:-33721279 MS.gene50698:CDS
TTGGGAACATGGTAATGTAG+AGG 0.615840 4.3:-33721030 MS.gene50698:CDS
GATCGTGTGTGGGAAGGTGT+AGG 0.618822 4.3:+33721362 None:intergenic
TGATGCATTAAAGTGTGGTA+TGG 0.619239 4.3:+33721544 None:intergenic
CCGCCGTTGATTCCGCTGAG+AGG 0.624123 4.3:-33721101 MS.gene50698:CDS
AAAACTTGCTGAGATTGCTA+TGG 0.624523 4.3:-33720535 MS.gene50698:CDS
GATTGAAAGAAATACCATCT+CGG 0.625004 4.3:+33719919 None:intergenic
GTTGATTCCGCTGAGAGGAA+GGG 0.625282 4.3:-33721096 MS.gene50698:CDS
GAGAGTGATCGTGTGTGGGA+AGG 0.627896 4.3:+33721356 None:intergenic
GATTTGGACAGTAGGGCGAG+TGG 0.629392 4.3:-33720882 MS.gene50698:CDS
TTGTCTAATAGCTCTGAATG+AGG 0.632805 4.3:-33718329 MS.gene50698:intron
GTTGAGAGAGTGATCGTGTG+TGG 0.632845 4.3:+33721351 None:intergenic
TGCTAAACCTAATTCGTCTG+TGG 0.633178 4.3:-33721069 MS.gene50698:CDS
TGTATGCAGAGAGATTCAGT+TGG 0.633937 4.3:-33720005 MS.gene50698:intron
AAGATTCGCGAAACGTGCAA+GGG 0.636424 4.3:+33721291 None:intergenic
TACCGCCGAGAAAATCTCAC+CGG 0.639423 4.3:-33721175 MS.gene50698:CDS
TGCTACAGCTGAGCTGAATG+GGG 0.641201 4.3:-33718275 MS.gene50698:CDS
TTCGGGTGATGGGAATTCCG+CGG 0.644154 4.3:-33720625 MS.gene50698:CDS
GTTAGTAGCAGAAATCAAAG+AGG 0.645697 4.3:-33721497 MS.gene50698:CDS
GTTGTTCCATGGATTGAAGG+CGG 0.649555 4.3:+33719952 None:intergenic
CGAAACGTGCAAGGGCTGAG+AGG 0.651618 4.3:+33721299 None:intergenic
GCAACTTCCCTTCCTCTCAG+CGG 0.652014 4.3:+33721089 None:intergenic
GTAGGACTTGTACTATGCGA+CGG 0.653735 4.3:+33721380 None:intergenic
TTGCTATGGCTGATCCGAAG+CGG 0.654077 4.3:-33720521 MS.gene50698:CDS
CAACAGGCAAAACTCCGAGA+TGG 0.660037 4.3:-33719933 MS.gene50698:intron
AAGTTGTGCAGAAAGTGTAG+TGG 0.665732 4.3:+33720304 None:intergenic
GATGATGATGCATTAAAGTG+TGG 0.674010 4.3:+33721539 None:intergenic
TTGAGAGAGTGATCGTGTGT+GGG 0.674945 4.3:+33721352 None:intergenic
GTCGCCGGAAGGTGAAGTTG+TGG 0.681642 4.3:-33720991 MS.gene50698:CDS
AGTGGAACGAAGACTAATGG+TGG 0.685995 4.3:-33720864 MS.gene50698:CDS
ATAGGGTTGACAGAATGTTG+CGG 0.688253 4.3:+33718226 None:intergenic
GAACTCCAAACTAAAAGCCG+CGG 0.690476 4.3:+33720608 None:intergenic
AACGTCAGCATGATCCGACG+TGG 0.691836 4.3:+33721265 None:intergenic
GAATATCACTGTTAGAACGC+CGG 0.693141 4.3:+33721156 None:intergenic
GGGTTTCTAGCAGCAAACGG+AGG 0.701318 4.3:+33721203 None:intergenic
CCTCTCAGCGGAATCAACGG+CGG 0.721208 4.3:+33721101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTCAAATTAATATTA+AGG + chr4.3:33720588-33720607 None:intergenic 10.0%
!! AAATTAATATTAAGGAAAAC+TGG + chr4.3:33720580-33720599 None:intergenic 15.0%
!! ATTTGAACATGAATTAATAA+AGG + chr4.3:33720796-33720815 None:intergenic 15.0%
!! TCTTACATTAATAAAATCTA+TGG + chr4.3:33719931-33719950 None:intergenic 15.0%
!! TTTGAACATGAATTAATAAA+GGG + chr4.3:33720795-33720814 None:intergenic 15.0%
!!! AGATTTTATTAATGTAAGAA+GGG - chr4.3:33719932-33719951 MS.gene50698:intron 15.0%
!!! ATGTTTTTCTTTTTTTGAAT+CGG + chr4.3:33720467-33720486 None:intergenic 15.0%
!!! CTATGAGAAAAATAATATTT+TGG - chr4.3:33720703-33720722 MS.gene50698:CDS 15.0%
!!! TAGATTTTATTAATGTAAGA+AGG - chr4.3:33719931-33719950 MS.gene50698:intron 15.0%
!!! TCATAGAATTTTTAAAAATG+TGG - chr4.3:33720001-33720020 MS.gene50698:intron 15.0%
!! AAACATAATTAGCTATGTAA+AGG + chr4.3:33721109-33721128 None:intergenic 20.0%
!! AACCAAATAGATGTTATAAT+AGG + chr4.3:33721033-33721052 None:intergenic 20.0%
!! AATTCATGTTCAAATTTCTT+GGG - chr4.3:33720801-33720820 MS.gene50698:CDS 20.0%
!! ATCCTATTATAACATCTATT+TGG - chr4.3:33721028-33721047 MS.gene50698:CDS 20.0%
!! TAATTCATGTTCAAATTTCT+TGG - chr4.3:33720800-33720819 MS.gene50698:CDS 20.0%
!! TTATATTTACTGCTAAAGTT+TGG - chr4.3:33720271-33720290 MS.gene50698:intron 20.0%
!! TTTAGTTAGTATTGTCAATA+TGG - chr4.3:33719260-33719279 MS.gene50698:intron 20.0%
!! TTTGTAGTTTCATAAAATCA+CGG - chr4.3:33720948-33720967 MS.gene50698:CDS 20.0%
!!! AAATCATGTTGATAATGTTT+TGG - chr4.3:33719621-33719640 MS.gene50698:intron 20.0%
!!! AATCATGTTGATAATGTTTT+GGG - chr4.3:33719622-33719641 MS.gene50698:intron 20.0%
!!! AATTTTTAAAAATGTGGTGA+GGG - chr4.3:33720007-33720026 MS.gene50698:intron 20.0%
!!! ATTTTATTAATGTAAGAAGG+GGG - chr4.3:33719934-33719953 MS.gene50698:CDS 20.0%
!!! ATTTTGACTTGGATATTTTT+TGG - chr4.3:33719290-33719309 MS.gene50698:intron 20.0%
!!! GATTTTATTAATGTAAGAAG+GGG - chr4.3:33719933-33719952 MS.gene50698:intron 20.0%
!!! TATTATAGCTTCTTTGTTTT+CGG - chr4.3:33719598-33719617 MS.gene50698:intron 20.0%
!!! TTTCAATCTCTCATTTTTTA+AGG - chr4.3:33719830-33719849 MS.gene50698:intron 20.0%
!!! TTTTGACTTGGATATTTTTT+GGG - chr4.3:33719291-33719310 MS.gene50698:intron 20.0%
!!! TTTTTCTGCTTATATGAATT+TGG - chr4.3:33718764-33718783 MS.gene50698:intron 20.0%
! AAAACAGTAGAAAATCCAAA+CGG + chr4.3:33718594-33718613 None:intergenic 25.0%
! AAACAATTGAACATCAGTAA+TGG + chr4.3:33720765-33720784 None:intergenic 25.0%
! AATTAACGATGATAAAAACG+CGG - chr4.3:33718800-33718819 MS.gene50698:intron 25.0%
! ACAACAAATGAACAATCATA+TGG - chr4.3:33718149-33718168 MS.gene50698:CDS 25.0%
! ATTCATGTTCAAATTTCTTG+GGG - chr4.3:33720802-33720821 MS.gene50698:CDS 25.0%
! TATGTTTGTAAGAGTTACTA+CGG - chr4.3:33721122-33721141 MS.gene50698:CDS 25.0%
!! TGCAACTCATTTTATGTTTA+TGG - chr4.3:33719873-33719892 MS.gene50698:intron 25.0%
!! TTGTTGTTGATGAGATATTA+TGG + chr4.3:33721268-33721287 None:intergenic 25.0%
!! TTTTCTTTATGTAGGTTACT+TGG - chr4.3:33720855-33720874 MS.gene50698:CDS 25.0%
!!! GAATTTTTAAAAATGTGGTG+AGG - chr4.3:33720006-33720025 MS.gene50698:intron 25.0%
!!! GATATTTTTTGGGTTATTTC+AGG - chr4.3:33719301-33719320 MS.gene50698:intron 25.0%
!!! TTTCGATGGATAGTTTTATT+GGG - chr4.3:33719009-33719028 MS.gene50698:intron 25.0%
AATCTTCAGTCTTTGAACTT+CGG + chr4.3:33721431-33721450 None:intergenic 30.0%
ATTCCGTTATTTACCTCAAA+AGG + chr4.3:33720142-33720161 None:intergenic 30.0%
CATTCATAATACAAGCAAGT+AGG + chr4.3:33720101-33720120 None:intergenic 30.0%
CGGAGAAAAACATAAAACAA+AGG + chr4.3:33720421-33720440 None:intergenic 30.0%
CTACTTGCTTGTATTATGAA+TGG - chr4.3:33720099-33720118 MS.gene50698:intron 30.0%
CTCTGCATACACAAAAAAAT+AGG + chr4.3:33719711-33719730 None:intergenic 30.0%
CTTTAACTCATTCTTTGAGT+TGG + chr4.3:33721614-33721633 None:intergenic 30.0%
GATTGAAAGAAATACCATCT+CGG + chr4.3:33719809-33719828 None:intergenic 30.0%
GTTAGTATTGTCAATATGGA+TGG - chr4.3:33719264-33719283 MS.gene50698:intron 30.0%
TAAGCCTTCATTTGATATTG+TGG - chr4.3:33719526-33719545 MS.gene50698:intron 30.0%
TGATTATTCATCTGAGAGTA+AGG + chr4.3:33718300-33718319 None:intergenic 30.0%
TTAACTTCAACTCACTATTC+TGG + chr4.3:33719653-33719672 None:intergenic 30.0%
TTCATAGTCATCTTGATTGA+CGG + chr4.3:33721001-33721020 None:intergenic 30.0%
! ATTTCAGGATATTGGCTAAT+AGG - chr4.3:33719316-33719335 MS.gene50698:intron 30.0%
! TTCATAGGAGTGTGTTAATT+AGG - chr4.3:33720314-33720333 MS.gene50698:CDS 30.0%
! TTTGGGTTATTTCAGGATAT+TGG - chr4.3:33719308-33719327 MS.gene50698:intron 30.0%
!! ACATTATAGAAGTGTTTCGA+TGG - chr4.3:33718995-33719014 MS.gene50698:intron 30.0%
!! TGTAGCTTTTTCCAAAATCA+CGG + chr4.3:33720927-33720946 None:intergenic 30.0%
!!! ATGGATGGTTAATTTTGACT+TGG - chr4.3:33719279-33719298 MS.gene50698:intron 30.0%
!!! GTTTCGATGGATAGTTTTAT+TGG - chr4.3:33719008-33719027 MS.gene50698:intron 30.0%
!!! TGTGAATGCATGTTTTAGTT+TGG - chr4.3:33719476-33719495 MS.gene50698:intron 30.0%
!!! TTTTTGGAAAAAAGCATCCT+GGG - chr4.3:33721145-33721164 MS.gene50698:CDS 30.0%
AAAGTTTGTATGACCAAGTG+TGG - chr4.3:33720531-33720550 MS.gene50698:CDS 35.0%
AATTTGGCATGCAGCAATTT+GGG - chr4.3:33719959-33719978 MS.gene50698:CDS 35.0%
ACACTTGGTCATACAAACTT+TGG + chr4.3:33720532-33720551 None:intergenic 35.0%
AGAGTAGTGTTAATGAGAGT+GGG - chr4.3:33718907-33718926 MS.gene50698:intron 35.0%
ATCTGAGAGTAAGGTGAAAT+AGG + chr4.3:33718291-33718310 None:intergenic 35.0%
ATGAAACTTCTAACCACACT+TGG + chr4.3:33720547-33720566 None:intergenic 35.0%
CTTCTATAATGTCTCGTAGT+CGG + chr4.3:33718987-33719006 None:intergenic 35.0%
GCTTGTATTATGAATGGAGT+TGG - chr4.3:33720105-33720124 MS.gene50698:intron 35.0%
GGTGAAAAGGGAAACAAATT+GGG - chr4.3:33718677-33718696 MS.gene50698:intron 35.0%
GGTTGTCTTCTTTGAACTTT+AGG - chr4.3:33720367-33720386 MS.gene50698:CDS 35.0%
GTTAGTAGCAGAAATCAAAG+AGG - chr4.3:33718228-33718247 MS.gene50698:CDS 35.0%
GTTGAAGTTAACACAATTGC+AGG - chr4.3:33719662-33719681 MS.gene50698:intron 35.0%
TAATTCGTCTGTGGTGAAAA+GGG - chr4.3:33718665-33718684 MS.gene50698:intron 35.0%
TAATTTGGCATGCAGCAATT+TGG - chr4.3:33719958-33719977 MS.gene50698:CDS 35.0%
TATCGTCAGTTTCAGCAAAA+GGG + chr4.3:33721076-33721095 None:intergenic 35.0%
TATGAAATGATCATGACAGC+CGG - chr4.3:33720727-33720746 MS.gene50698:CDS 35.0%
TCAGATGAATAATCAGATCC+CGG - chr4.3:33718305-33718324 MS.gene50698:CDS 35.0%
TCATTCAGAGCTATTAGACA+AGG + chr4.3:33721397-33721416 None:intergenic 35.0%
TCTAACAGTGATATTCCGTT+TGG - chr4.3:33718576-33718595 MS.gene50698:intron 35.0%
TGATGCATTAAAGTGTGGTA+TGG + chr4.3:33718184-33718203 None:intergenic 35.0%
TGGTGAAAAGGGAAACAAAT+TGG - chr4.3:33718676-33718695 MS.gene50698:intron 35.0%
TTAAGTCCTCTGTTTAGCAT+TGG - chr4.3:33720616-33720635 MS.gene50698:CDS 35.0%
! CAGGTAGCTTTTCTTTATGT+AGG - chr4.3:33720847-33720866 MS.gene50698:CDS 35.0%
! GATGATGATGCATTAAAGTG+TGG + chr4.3:33718189-33718208 None:intergenic 35.0%
! GCCATAATTTTCTTCAACTC+CGG + chr4.3:33719164-33719183 None:intergenic 35.0%
! GTAAGAGTTACTACGGTTTT+TGG - chr4.3:33721129-33721148 MS.gene50698:CDS 35.0%
! TCTGTTTAGCATTGGAAGAT+GGG - chr4.3:33720624-33720643 MS.gene50698:CDS 35.0%
!! AAAACTTGCTGAGATTGCTA+TGG - chr4.3:33719190-33719209 MS.gene50698:intron 35.0%
!! AGGTGCATAACAGTTGTTTT+TGG - chr4.3:33720334-33720353 MS.gene50698:CDS 35.0%
!! TACTGCTAAAGTTTGGTGTT+TGG - chr4.3:33720278-33720297 MS.gene50698:intron 35.0%
!! TTGTCTAATAGCTCTGAATG+AGG - chr4.3:33721396-33721415 MS.gene50698:CDS 35.0%
!!! CTATTTGGTTTTCCCTCAAA+TGG - chr4.3:33721043-33721062 MS.gene50698:CDS 35.0%
!!! GGTGCATAACAGTTGTTTTT+GGG - chr4.3:33720335-33720354 MS.gene50698:CDS 35.0%
!!! GTGCATAACAGTTGTTTTTG+GGG - chr4.3:33720336-33720355 MS.gene50698:CDS 35.0%
!!! GTTTTTGGAAAAAAGCATCC+TGG - chr4.3:33721144-33721163 MS.gene50698:CDS 35.0%
AAAGGGAAAACGTCCATTTG+AGG + chr4.3:33721059-33721078 None:intergenic 40.0%
AAGAATGTAGATCCCTGACA+TGG - chr4.3:33720504-33720523 MS.gene50698:intron 40.0%
AAGGGAAAACGTCCATTTGA+GGG + chr4.3:33721058-33721077 None:intergenic 40.0%
ACAAACTTTGGTACCATGTC+AGG + chr4.3:33720520-33720539 None:intergenic 40.0%
ACAACTTACTTTGTTGCAGG+TGG - chr4.3:33719437-33719456 MS.gene50698:intron 40.0%
AGGATAGCCATATCACTGTA+TGG + chr4.3:33720401-33720420 None:intergenic 40.0%
AGGGAAACAAATTGGGAACA+TGG - chr4.3:33718684-33718703 MS.gene50698:intron 40.0%
AGTAGCAGAAATCAAAGAGG+AGG - chr4.3:33718231-33718250 MS.gene50698:CDS 40.0%
ATAATCAGATCCCGGTTTCA+CGG - chr4.3:33718313-33718332 MS.gene50698:CDS 40.0%
ATAGGGTTGACAGAATGTTG+CGG + chr4.3:33721502-33721521 None:intergenic 40.0%
ATGAAATGATCATGACAGCC+GGG - chr4.3:33720728-33720747 MS.gene50698:CDS 40.0%
ATGTAAGAAGGGGGCTAATT+TGG - chr4.3:33719943-33719962 MS.gene50698:CDS 40.0%
CAAACTTTGGTACCATGTCA+GGG + chr4.3:33720519-33720538 None:intergenic 40.0%
CAACTTACTTTGTTGCAGGT+GGG - chr4.3:33719438-33719457 MS.gene50698:intron 40.0%
CATCTTCCAATGCTAAACAG+AGG + chr4.3:33720625-33720644 None:intergenic 40.0%
CATGTTCAAATTTCTTGGGG+AGG - chr4.3:33720805-33720824 MS.gene50698:CDS 40.0%
CCTAGGTAATATCTTGAGTC+AGG - chr4.3:33720828-33720847 MS.gene50698:CDS 40.0%
CCTGACTCAAGATATTACCT+AGG + chr4.3:33720831-33720850 None:intergenic 40.0%
CTAATTCGTCTGTGGTGAAA+AGG - chr4.3:33718664-33718683 MS.gene50698:intron 40.0%
GAAAGTAGATGCTGAGTAGT+TGG - chr4.3:33721167-33721186 MS.gene50698:CDS 40.0%
GAATATCACTGTTAGAACGC+CGG + chr4.3:33718572-33718591 None:intergenic 40.0%
GAGAGTAAGGTGAAATAGGT+GGG + chr4.3:33718287-33718306 None:intergenic 40.0%
GAGAGTAGTGTTAATGAGAG+TGG - chr4.3:33718906-33718925 MS.gene50698:intron 40.0%
GAGTAGTGTTAATGAGAGTG+GGG - chr4.3:33718908-33718927 MS.gene50698:intron 40.0%
GCCGGAGTTGAAGAAAATTA+TGG - chr4.3:33719160-33719179 MS.gene50698:intron 40.0%
GCTGTTGTTGGAACATCATA+GGG + chr4.3:33721519-33721538 None:intergenic 40.0%
GGAACTTCAACTCACTATTC+TGG + chr4.3:33719755-33719774 None:intergenic 40.0%
GTATCGTCAGTTTCAGCAAA+AGG + chr4.3:33721077-33721096 None:intergenic 40.0%
GTTGATGTCACCTGGTAATT+CGG - chr4.3:33719082-33719101 MS.gene50698:intron 40.0%
GTTTGGATCAACAGTGAGAT+TGG - chr4.3:33720883-33720902 MS.gene50698:CDS 40.0%
TGAGAGTAAGGTGAAATAGG+TGG + chr4.3:33718288-33718307 None:intergenic 40.0%
TGCACAACTTACTTTGTTGC+AGG - chr4.3:33719434-33719453 MS.gene50698:intron 40.0%
TGCTAAACCTAATTCGTCTG+TGG - chr4.3:33718656-33718675 MS.gene50698:intron 40.0%
TGCTGTTGTTGGAACATCAT+AGG + chr4.3:33721520-33721539 None:intergenic 40.0%
TGGTGATAATCGCGATGATT+TGG - chr4.3:33718827-33718846 MS.gene50698:intron 40.0%
TGTATGCAGAGAGATTCAGT+TGG - chr4.3:33719720-33719739 MS.gene50698:intron 40.0%
TTGATGTCACCTGGTAATTC+GGG - chr4.3:33719083-33719102 MS.gene50698:intron 40.0%
! AAGTTGTGCAGAAAGTGTAG+TGG + chr4.3:33719424-33719443 None:intergenic 40.0%
! ATTTTCTCGGCGGTAAAGAA+GGG + chr4.3:33718545-33718564 None:intergenic 40.0%
! CGCGTTTTGTAAAATTGTGG+TGG - chr4.3:33719549-33719568 MS.gene50698:intron 40.0%
! CTCTGTTTAGCATTGGAAGA+TGG - chr4.3:33720623-33720642 MS.gene50698:CDS 40.0%
! CTTTTCACCACAGACGAATT+AGG + chr4.3:33718666-33718685 None:intergenic 40.0%
! GTAATGGAATCAGTAAACCC+CGG + chr4.3:33720749-33720768 None:intergenic 40.0%
! TGGCGCGTTTTGTAAAATTG+TGG - chr4.3:33719546-33719565 MS.gene50698:intron 40.0%
! TTGGGAACATGGTAATGTAG+AGG - chr4.3:33718695-33718714 MS.gene50698:intron 40.0%
!! TAAAGTTTGGTGTTTGGCCA+AGG - chr4.3:33720284-33720303 MS.gene50698:intron 40.0%
!! TAGGTTACTTGGTGCATGTT+TGG - chr4.3:33720866-33720885 MS.gene50698:CDS 40.0%
!! TTTAGTTTGGAGTTCGGGAA+TGG - chr4.3:33719125-33719144 MS.gene50698:intron 40.0%
!!! GGGCCTTTTGAGGTAAATAA+CGG - chr4.3:33720136-33720155 MS.gene50698:intron 40.0%
AAATAGGTGGGATCTGGTGT+GGG + chr4.3:33718275-33718294 None:intergenic 45.0%
AAGATTCGCGAAACGTGCAA+GGG + chr4.3:33718437-33718456 None:intergenic 45.0%
AAGGTGAAATAGGTGGGATC+TGG + chr4.3:33718281-33718300 None:intergenic 45.0%
AGCAGAAATCAAAGAGGAGG+TGG - chr4.3:33718234-33718253 MS.gene50698:CDS 45.0%
AGCAGGAAGGCTCTCTAATT+GGG - chr4.3:33720169-33720188 MS.gene50698:intron 45.0%
AGTGGAACGAAGACTAATGG+TGG - chr4.3:33718861-33718880 MS.gene50698:intron 45.0%
ATAGTATGCAGAGGAGGGAA+GGG - chr4.3:33718931-33718950 MS.gene50698:intron 45.0%
ATCTTGATTGACGGTGAGTC+CGG + chr4.3:33720992-33721011 None:intergenic 45.0%
ATGAATGGAGTTGGAATCCG+AGG - chr4.3:33720114-33720133 MS.gene50698:intron 45.0%
ATTGCTACAGCTGAGCTGAA+TGG - chr4.3:33721448-33721467 MS.gene50698:CDS 45.0%
ATTTACCTCAAAAGGCCCCT+CGG + chr4.3:33720134-33720153 None:intergenic 45.0%
CAACCCACACAAGACGTAAT+AGG + chr4.3:33720444-33720463 None:intergenic 45.0%
CAGTGAGATTGGCAGAATTG+CGG - chr4.3:33720894-33720913 MS.gene50698:CDS 45.0%
CATCAACAACAGCAGCAGAA+TGG - chr4.3:33721583-33721602 MS.gene50698:CDS 45.0%
CATTTCCGAGCTAGAACACA+AGG - chr4.3:33719377-33719396 MS.gene50698:intron 45.0%
CCTTCAATCCATGGAACAAC+AGG - chr4.3:33719776-33719795 MS.gene50698:intron 45.0%
CGCGCCACAATATCAAATGA+AGG + chr4.3:33719533-33719552 None:intergenic 45.0%
CTTGGAGATGGAGTTTGGTT+AGG - chr4.3:33720066-33720085 MS.gene50698:intron 45.0%
GAACTCCAAACTAAAAGCCG+CGG + chr4.3:33719120-33719139 None:intergenic 45.0%
GAGTCGAGGGAGAAAAAAGA+CGG + chr4.3:33718399-33718418 None:intergenic 45.0%
GATGATAAAAACGCGGCTAC+TGG - chr4.3:33718807-33718826 MS.gene50698:intron 45.0%
GCTGCTACCATACAGTGATA+TGG - chr4.3:33720391-33720410 MS.gene50698:CDS 45.0%
GGATCATGCTGACGTTTCTA+TGG - chr4.3:33718467-33718486 MS.gene50698:intron 45.0%
GTAGGACTTGTACTATGCGA+CGG + chr4.3:33718348-33718367 None:intergenic 45.0%
TACTCAGCATCTACTTTCCC+AGG + chr4.3:33721165-33721184 None:intergenic 45.0%
TCATCCACAACTTCACCTTC+CGG + chr4.3:33718741-33718760 None:intergenic 45.0%
TCGGGAATGGTGAGTTTAGT+GGG - chr4.3:33719138-33719157 MS.gene50698:intron 45.0%
TGAAATGATCATGACAGCCG+GGG - chr4.3:33720729-33720748 MS.gene50698:CDS 45.0%
TGAATGGAGTTGGAATCCGA+GGG - chr4.3:33720115-33720134 MS.gene50698:intron 45.0%
TGCGGAATCATGCAGTTAGA+AGG + chr4.3:33721484-33721503 None:intergenic 45.0%
TTCGGGAATGGTGAGTTTAG+TGG - chr4.3:33719137-33719156 MS.gene50698:intron 45.0%
TTGAGAGAGTGATCGTGTGT+GGG + chr4.3:33718376-33718395 None:intergenic 45.0%
TTGCTACAGCTGAGCTGAAT+GGG - chr4.3:33721449-33721468 MS.gene50698:CDS 45.0%
! ACGAAATCAAGGTGCTAGCT+TGG - chr4.3:33720048-33720067 MS.gene50698:intron 45.0%
! ATAACGGAATCTAGAGCAGC+AGG - chr4.3:33720152-33720171 MS.gene50698:intron 45.0%
! ATCGCGATGATTTGGACAGT+AGG - chr4.3:33718835-33718854 MS.gene50698:intron 45.0%
! CCTGTTGTTCCATGGATTGA+AGG + chr4.3:33719779-33719798 None:intergenic 45.0%
! CTGAACCTTGTGTTCTAGCT+CGG + chr4.3:33719385-33719404 None:intergenic 45.0%
! GAAGGGAATAAGAGAAGTGC+AGG - chr4.3:33718948-33718967 MS.gene50698:intron 45.0%
! GAGTTTTGCCTGTTGTTCCA+TGG + chr4.3:33719787-33719806 None:intergenic 45.0%
! GATTTTCTCGGCGGTAAAGA+AGG + chr4.3:33718546-33718565 None:intergenic 45.0%
! GTATCGCATTTTGCGCTCTT+TGG + chr4.3:33719358-33719377 None:intergenic 45.0%
! GTTGTTCCATGGATTGAAGG+CGG + chr4.3:33719776-33719795 None:intergenic 45.0%
! TCGCGATGATTTGGACAGTA+GGG - chr4.3:33718836-33718855 MS.gene50698:intron 45.0%
!! AGCATTGGAAGATGGGTTGT+AGG - chr4.3:33720631-33720650 MS.gene50698:CDS 45.0%
!! CGAGATAGTGGACGAAATCA+AGG - chr4.3:33720037-33720056 MS.gene50698:intron 45.0%
!! GAAGGGTTTCTAGCAGCAAA+CGG + chr4.3:33718528-33718547 None:intergenic 45.0%
!! GAATTCCGCGGCTTTTAGTT+TGG - chr4.3:33719112-33719131 MS.gene50698:intron 45.0%
!!! CGGCTTTTAGTTTGGAGTTC+GGG - chr4.3:33719120-33719139 MS.gene50698:intron 45.0%
!!! GCGGCTTTTAGTTTGGAGTT+CGG - chr4.3:33719119-33719138 MS.gene50698:intron 45.0%
!!! GTTGTTTTTGGGGAGTCTCT+TGG - chr4.3:33720346-33720365 MS.gene50698:CDS 45.0%
AAGGCTCTCTAATTGGGTCG+CGG - chr4.3:33720175-33720194 MS.gene50698:intron 50.0%
AGAGTGGGGATAGTATGCAG+AGG - chr4.3:33718922-33718941 MS.gene50698:intron 50.0%
CAAATTTCTTGGGGAGGCCT+AGG - chr4.3:33720811-33720830 MS.gene50698:CDS 50.0%
CAACAGGCAAAACTCCGAGA+TGG - chr4.3:33719792-33719811 MS.gene50698:intron 50.0%
CACCTGGTAATTCGGGTGAT+GGG - chr4.3:33719090-33719109 MS.gene50698:intron 50.0%
CAGCAGGAAGGCTCTCTAAT+TGG - chr4.3:33720168-33720187 MS.gene50698:intron 50.0%
CCCACACAAGACGTAATAGG+CGG + chr4.3:33720441-33720460 None:intergenic 50.0%
CCGCCTATTACGTCTTGTGT+GGG - chr4.3:33720438-33720457 MS.gene50698:intron 50.0%
CTAGCAGCAAACGGAGGTAA+AGG + chr4.3:33718519-33718538 None:intergenic 50.0%
CTTCCTCTCAGCGGAATCAA+CGG + chr4.3:33718630-33718649 None:intergenic 50.0%
GAAATAGGTGGGATCTGGTG+TGG + chr4.3:33718276-33718295 None:intergenic 50.0%
GAAGAAATCGTCGTTGTCGC+CGG - chr4.3:33718719-33718738 MS.gene50698:intron 50.0%
GAAGATTCGCGAAACGTGCA+AGG + chr4.3:33718438-33718457 None:intergenic 50.0%
GAAGTTCCGCCTTCAATCCA+TGG - chr4.3:33719767-33719786 MS.gene50698:intron 50.0%
GAATGGAGTTGGAATCCGAG+GGG - chr4.3:33720116-33720135 MS.gene50698:intron 50.0%
GAGGGATGTAGACGAGATAG+TGG - chr4.3:33720025-33720044 MS.gene50698:intron 50.0%
GATAGTATGCAGAGGAGGGA+AGG - chr4.3:33718930-33718949 MS.gene50698:intron 50.0%
GCGAGTGGAACGAAGACTAA+TGG - chr4.3:33718858-33718877 MS.gene50698:intron 50.0%
GCTGATGCTGATGCTGTTGT+TGG + chr4.3:33721531-33721550 None:intergenic 50.0%
GTACTATGCGACGGCATTTG+CGG + chr4.3:33718339-33718358 None:intergenic 50.0%
GTGAGTCCGGCAACAAATCA+TGG + chr4.3:33720979-33720998 None:intergenic 50.0%
GTTGAGAGAGTGATCGTGTG+TGG + chr4.3:33718377-33718396 None:intergenic 50.0%
TACCGCCGAGAAAATCTCAC+CGG - chr4.3:33718550-33718569 MS.gene50698:intron 50.0%
TCACCTGGTAATTCGGGTGA+TGG - chr4.3:33719089-33719108 MS.gene50698:intron 50.0%
TCCGCCTATTACGTCTTGTG+TGG - chr4.3:33720437-33720456 MS.gene50698:intron 50.0%
TCGCGAATCTTCTTCCACGT+CGG - chr4.3:33718446-33718465 MS.gene50698:intron 50.0%
TGCTACAGCTGAGCTGAATG+GGG - chr4.3:33721450-33721469 MS.gene50698:CDS 50.0%
TGGGGATAGTATGCAGAGGA+GGG - chr4.3:33718926-33718945 MS.gene50698:intron 50.0%
TTCCCATCACCCGAATTACC+AGG + chr4.3:33719095-33719114 None:intergenic 50.0%
TTGCTATGGCTGATCCGAAG+CGG - chr4.3:33719204-33719223 MS.gene50698:intron 50.0%
! GAACGCCGGTGAGATTTTCT+CGG + chr4.3:33718558-33718577 None:intergenic 50.0%
! GAATGGTGAGTTTAGTGGGC+CGG - chr4.3:33719142-33719161 MS.gene50698:intron 50.0%
! GCGGTAGTCTACCGTGATTT+TGG - chr4.3:33720913-33720932 MS.gene50698:CDS 50.0%
! GCTAGCTTGGAGATGGAGTT+TGG - chr4.3:33720061-33720080 MS.gene50698:intron 50.0%
! GGGAATAAGAGAAGTGCAGG+AGG - chr4.3:33718951-33718970 MS.gene50698:intron 50.0%
! GTTGATTCCGCTGAGAGGAA+GGG - chr4.3:33718629-33718648 MS.gene50698:intron 50.0%
! TCAAGGTGCTAGCTTGGAGA+TGG - chr4.3:33720054-33720073 MS.gene50698:intron 50.0%
! TGTGTTTGCTGCTGCCAGTA+GGG - chr4.3:33720233-33720252 MS.gene50698:intron 50.0%
!! AGTTTGGTGTTTGGCCAAGG+CGG - chr4.3:33720287-33720306 MS.gene50698:intron 50.0%
!! GTGCTGCCATGATTTGTTGC+CGG - chr4.3:33720970-33720989 MS.gene50698:CDS 50.0%
AAATCGTCGTTGTCGCCGGA+AGG - chr4.3:33718723-33718742 MS.gene50698:intron 55.0%
AACGTCAGCATGATCCGACG+TGG + chr4.3:33718463-33718482 None:intergenic 55.0%
ATCTGGTGTGGGTGTGATGG+TGG + chr4.3:33718264-33718283 None:intergenic 55.0%
CTCCTATGAACGTACCGCCT+TGG + chr4.3:33720304-33720323 None:intergenic 55.0%
GAGAGTGATCGTGTGTGGGA+AGG + chr4.3:33718372-33718391 None:intergenic 55.0%
GATTTGGACAGTAGGGCGAG+TGG - chr4.3:33718843-33718862 MS.gene50698:intron 55.0%
GCAACTTCCCTTCCTCTCAG+CGG + chr4.3:33718639-33718658 None:intergenic 55.0%
GTGGGGATAGTATGCAGAGG+AGG - chr4.3:33718925-33718944 MS.gene50698:intron 55.0%
TGCTATGGCTGATCCGAAGC+GGG - chr4.3:33719205-33719224 MS.gene50698:intron 55.0%
TTGAAGATGCCTCCTTCGCC+TGG - chr4.3:33719056-33719075 MS.gene50698:intron 55.0%
! CGGAATCTAGAGCAGCAGGA+AGG - chr4.3:33720156-33720175 MS.gene50698:intron 55.0%
! CTGTGTTTGCTGCTGCCAGT+AGG - chr4.3:33720232-33720251 MS.gene50698:intron 55.0%
! GATCGTGTGTGGGAAGGTGT+AGG + chr4.3:33718366-33718385 None:intergenic 55.0%
! GTGTTTGCTGCTGCCAGTAG+GGG - chr4.3:33720234-33720253 MS.gene50698:intron 55.0%
!! CGTTGATTCCGCTGAGAGGA+AGG - chr4.3:33718628-33718647 MS.gene50698:intron 55.0%
!! GGGTTTCTAGCAGCAAACGG+AGG + chr4.3:33718525-33718544 None:intergenic 55.0%
!! TTCGGGTGATGGGAATTCCG+CGG - chr4.3:33719100-33719119 MS.gene50698:intron 55.0%
!!! GGGTCGCGGTGCAGTTTTTT+TGG - chr4.3:33720189-33720208 MS.gene50698:intron 55.0%
AACGTGCAAGGGCTGAGAGG+CGG + chr4.3:33718426-33718445 None:intergenic 60.0%
AAGATGCCTCCTTCGCCTGG+AGG - chr4.3:33719059-33719078 MS.gene50698:intron 60.0%
AGATGCCTCCTTCGCCTGGA+GGG - chr4.3:33719060-33719079 MS.gene50698:intron 60.0%
ATCAACCCTCCAGGCGAAGG+AGG + chr4.3:33719068-33719087 None:intergenic 60.0%
CAGCACCTCTTAGCCCGCTT+CGG + chr4.3:33719221-33719240 None:intergenic 60.0%
CCAGGTGACATCAACCCTCC+AGG + chr4.3:33719077-33719096 None:intergenic 60.0%
CCTCTCAGCGGAATCAACGG+CGG + chr4.3:33718627-33718646 None:intergenic 60.0%
CGAAACGTGCAAGGGCTGAG+AGG + chr4.3:33718429-33718448 None:intergenic 60.0%
GACATCAACCCTCCAGGCGA+AGG + chr4.3:33719071-33719090 None:intergenic 60.0%
GAGAGGCGGAAGAGAGTCGA+GGG + chr4.3:33718412-33718431 None:intergenic 60.0%
GCATTTGCGGCCGTGAAACC+GGG + chr4.3:33718326-33718345 None:intergenic 60.0%
GGCATTTGCGGCCGTGAAAC+CGG + chr4.3:33718327-33718346 None:intergenic 60.0%
GGCCAAGGCGGTACGTTCAT+AGG - chr4.3:33720299-33720318 MS.gene50698:CDS 60.0%
GGGATCTGGTGTGGGTGTGA+TGG + chr4.3:33718267-33718286 None:intergenic 60.0%
GTCGCCGGAAGGTGAAGTTG+TGG - chr4.3:33718734-33718753 MS.gene50698:intron 60.0%
TGAGAGGCGGAAGAGAGTCG+AGG + chr4.3:33718413-33718432 None:intergenic 60.0%
! CGCCGGTGAGATTTTCTCGG+CGG + chr4.3:33718555-33718574 None:intergenic 60.0%
! GGAATCCGAGGGGCCTTTTG+AGG - chr4.3:33720126-33720145 MS.gene50698:intron 60.0%
!! CCTGGAGGGTTGATGTCACC+TGG - chr4.3:33719074-33719093 MS.gene50698:intron 60.0%
!! CTGATCCGAAGCGGGCTAAG+AGG - chr4.3:33719213-33719232 MS.gene50698:intron 60.0%
CCAGCACAGACAGCCCCTAC+TGG + chr4.3:33720250-33720269 None:intergenic 65.0%
CCAGTAGGGGCTGTCTGTGC+TGG - chr4.3:33720247-33720266 MS.gene50698:intron 65.0%
!! CCGCCGTTGATTCCGCTGAG+AGG - chr4.3:33718624-33718643 MS.gene50698:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 33718108 33721639 33718108 ID=MS.gene50698
chr4.3 mRNA 33718108 33721639 33718108 ID=MS.gene50698.t1;Parent=MS.gene50698
chr4.3 exon 33720513 33721639 33720513 ID=MS.gene50698.t1.exon1;Parent=MS.gene50698.t1
chr4.3 CDS 33720513 33721639 33720513 ID=cds.MS.gene50698.t1;Parent=MS.gene50698.t1
chr4.3 exon 33720292 33720424 33720292 ID=MS.gene50698.t1.exon2;Parent=MS.gene50698.t1
chr4.3 CDS 33720292 33720424 33720292 ID=cds.MS.gene50698.t1;Parent=MS.gene50698.t1
chr4.3 exon 33719934 33720018 33719934 ID=MS.gene50698.t1.exon3;Parent=MS.gene50698.t1
chr4.3 CDS 33719934 33720018 33719934 ID=cds.MS.gene50698.t1;Parent=MS.gene50698.t1
chr4.3 exon 33718108 33718340 33718108 ID=MS.gene50698.t1.exon4;Parent=MS.gene50698.t1
chr4.3 CDS 33718108 33718340 33718108 ID=cds.MS.gene50698.t1;Parent=MS.gene50698.t1
Gene Sequence

>MS.gene50698

ATGGAAGATAGTGAAGCAGCTTCATCTTTCATGAAACAACAACAACAAATGAACAATCATATGGAACAATTAACCATACCACACTTTAATGCATCATCATCACAATCACAAATGCGAACTGTTAGTAGCAGAAATCAAAGAGGAGGTGGTATACCACCATCACACCCACACCAGATCCCACCTATTTCACCTTACTCTCAGATGAATAATCAGATCCCGGTTTCACGGCCGCAAATGCCGTCGCATAGTACAAGTCCTACACCTTCCCACACACGATCACTCTCTCAACCGTCTTTTTTCTCCCTCGACTCTCTTCCGCCTCTCAGCCCTTGCACGTTTCGCGAATCTTCTTCCACGTCGGATCATGCTGACGTTTCTATGGAAGATCGTGACGTCACTTCTCATTCACCTTTACCTCCGTTTGCTGCTAGAAACCCTTCTTTACCGCCGAGAAAATCTCACCGGCGTTCTAACAGTGATATTCCGTTTGGATTTTCTACTGTTTTGCAGTCTTCGCCGCCGTTGATTCCGCTGAGAGGAAGGGAAGTTGCTAAACCTAATTCGTCTGTGGTGAAAAGGGAAACAAATTGGGAACATGGTAATGTAGAGGAGAAGAAATCGTCGTTGTCGCCGGAAGGTGAAGTTGTGGATGATCTTTTTTCTGCTTATATGAATTTGGATAACATTGATGCAATTAACGATGATAAAAACGCGGCTACTGGTGATAATCGCGATGATTTGGACAGTAGGGCGAGTGGAACGAAGACTAATGGTGGTGATAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATAGTATGCAGAGGAGGGAAGGGAATAAGAGAAGTGCAGGAGGTGATATTGCACCGACTACGAGACATTATAGAAGTGTTTCGATGGATAGTTTTATTGGGAAGTTGAATTTCAATGACGAGTCTTTGAAGATGCCTCCTTCGCCTGGAGGGTTGATGTCACCTGGTAATTCGGGTGATGGGAATTCCGCGGCTTTTAGTTTGGAGTTCGGGAATGGTGAGTTTAGTGGGCCGGAGTTGAAGAAAATTATGGCTAATGAAAAACTTGCTGAGATTGCTATGGCTGATCCGAAGCGGGCTAAGAGGTGCTGTAACTGAATTATTCAACGTTTTAGTTAGTATTGTCAATATGGATGGTTAATTTTGACTTGGATATTTTTTGGGTTATTTCAGGATATTGGCTAATAGGCAATCAGCTGCGCGTTCCAAAGAGCGCAAAATGCGATACATTTCCGAGCTAGAACACAAGGTTCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGGTGGGAACATTATTTGTGTTTGTGAATGCATGTTTTAGTTTGGTAATTTCAGCTTAGTTTCTTTTTTTACTAAGCCTTCATTTGATATTGTGGCGCGTTTTGTAAAATTGTGGTGGAAATCAACGCTGACGTGAAAGCTGCTTATTATAGCTTCTTTGTTTTCGGAAATCATGTTGATAATGTTTTGGGACTAACCAGAATAGTGAGTTGAAGTTAACACAATTGCAGGTTCAAACATGCGCTAATTTTATTCCTATTTTTTTGTGTATGCAGAGAGATTCAGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTCCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGGTATTTCTTTCAATCTTTTCAATCTCTCATTTTTTAAGGATTTGCAAAACATACAACATTGCAACTCATTTTATGTTTATGGCTGAAAACTATCAAGCTGAAAACATAAAAGATCCATAGATTTTATTAATGTAAGAAGGGGGCTAATTTGGCATGCAGCAATTTGGGTTATTTGAAAAACTAGAAATCATAGAATTTTTAAAAATGTGGTGAGGGATGTAGACGAGATAGTGGACGAAATCAAGGTGCTAGCTTGGAGATGGAGTTTGGTTAGGCTCAATATTCCTACTTGCTTGTATTATGAATGGAGTTGGAATCCGAGGGGCCTTTTGAGGTAAATAACGGAATCTAGAGCAGCAGGAAGGCTCTCTAATTGGGTCGCGGTGCAGTTTTTTTGGATACTTAGCAGACTGCTGTTCTGTGTTTGCTGCTGCCAGTAGGGGCTGTCTGTGCTGGTTTATATTTACTGCTAAAGTTTGGTGTTTGGCCAAGGCGGTACGTTCATAGGAGTGTGTTAATTAGGTGCATAACAGTTGTTTTTGGGGAGTCTCTTGGTTGTCTTCTTTGAACTTTAGGTGCTGCTACCATACAGTGATATGGCTATCCTTTGTTTTATGTTTTTCTCCGCCTATTACGTCTTGTGTGGGTTGCCGATTCAAAAAAAGAAAAACATTAACAGCTTAAGCTTTTAAGAATGTAGATCCCTGACATGGTACCAAAGTTTGTATGACCAAGTGTGGTTAGAAGTTTCATTCTCGCTATTCCAGTTTTCCTTAATATTAATTTGAATTTCAGTACAAGATTAAGTCCTCTGTTTAGCATTGGAAGATGGGTTGTAGGAATTAAAAAGATAAGATTAGAACTTTAATGATACAAAACAGCGTTTGTACTATGAGAAAAATAATATTTTGGTTATGAAATGATCATGACAGCCGGGGTTTACTGATTCCATTACTGATGTTCAATTGTTTAAGCTGTCCCTTTATTAATTCATGTTCAAATTTCTTGGGGAGGCCTAGGTAATATCTTGAGTCAGGTAGCTTTTCTTTATGTAGGTTACTTGGTGCATGTTTGGATCAACAGTGAGATTGGCAGAATTGCGGTAGTCTACCGTGATTTTGGAAAAAGCTACACTTTGTAGTTTCATAAAATCACGGTGCTGCCATGATTTGTTGCCGGACTCACCGTCAATCAAGATGACTATGAACACGACAATCCTATTATAACATCTATTTGGTTTTCCCTCAAATGGACGTTTTCCCTTTTGCTGAAACTGACGATACATGAGATTTCCTTTACATAGCTAATTATGTTTGTAAGAGTTACTACGGTTTTTGGAAAAAAGCATCCTGGGAAAGTAGATGCTGAGTAGTTGGTTTTCTCTTTGCATTTGTTATAGATAATATACTTTGTGATGCACGCTTCTTTTCTATTAGAAGTATTAATAAAAGCCATAATATCTCATCAACAACAATTATATACAATATCTAGTAGTTGTCACTTGTATCACAAACAATTTTAGACTTGTTAGTAGAACTTTTCATTGTTTGCTTTTTGCTGATTACTTCTGATCTGTGTATCCTTGTCTAATAGCTCTGAATGAGGCGCTTACTGCCGAAGTTCAAAGACTGAAGATTGCTACAGCTGAGCTGAATGGGGAGTCACTTCCTTCTAACTGCATGATTCCGCAACATTCTGTCAACCCTATGATGTTCCAACAACAGCATCAGCATCAGCATCAGCATCAGCAGCATCAACAACAGCAGCAGCATCAACAACAGCAGCAGAATGGTAATGCCAACTCAAAGAATGAGTTAAAGCAATAG
Protein sequence

>MS.gene50698.t1

MEDSEAASSFMKQQQQMNNHMEQLTIPHFNASSSQSQMRTVSSRNQRGGGIPPSHPHQIPPISPYSQMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLPPLSPCTFRESSSTSDHADVSMEDRDVTSHSPLPPFAARNPSLPPRKSHRRSNSDIPFGFSTVLQSSPPLIPLRGREVAKPNSSVVKRETNWEHGNVEEKKSSLSPEGEVVDDLFSAYMNLDNIDAINDDKNAATGDNRDDLDSRASGTKTNGGDSSDNEAESSVNESGDSMQRREGNKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESLKMPPSPGGLMSPGNSGDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIAMADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKIATAELNGESLPSNCMIPQHSVNPMMFQQQHQHQHQHQQHQQQQQHQQQQQNGNANSKNELKQ