Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50846.t1 | AES68281.1 | 81.4 | 274 | 41 | 1 | 1 | 274 | 1 | 264 | 1.70E-123 | 452.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50846.t1 | Q8L3W1 | 27.9 | 341 | 153 | 8 | 21 | 274 | 6 | 340 | 7.0e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50846.t1 | G7IYE9 | 81.4 | 274 | 41 | 1 | 1 | 274 | 1 | 264 | 1.2e-123 | 452.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene50846.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50846.t1 | MTR_3g005480 | 83.942 | 274 | 34 | 1 | 1 | 274 | 1 | 264 | 3.53e-171 | 474 |
| MS.gene50846.t1 | MTR_3g005490 | 78.261 | 276 | 49 | 2 | 1 | 276 | 1 | 265 | 1.32e-156 | 437 |
| MS.gene50846.t1 | MTR_5g070440 | 69.203 | 276 | 83 | 1 | 1 | 276 | 1 | 274 | 1.95e-138 | 391 |
| MS.gene50846.t1 | MTR_3g005420 | 64.368 | 261 | 91 | 1 | 16 | 276 | 284 | 542 | 1.97e-117 | 347 |
| MS.gene50846.t1 | MTR_3g005420 | 54.275 | 269 | 97 | 4 | 1 | 267 | 20 | 264 | 8.43e-84 | 261 |
| MS.gene50846.t1 | MTR_3g005460 | 62.132 | 272 | 94 | 3 | 14 | 276 | 252 | 523 | 1.35e-111 | 332 |
| MS.gene50846.t1 | MTR_3g005460 | 54.717 | 265 | 93 | 4 | 2 | 264 | 4 | 243 | 1.99e-87 | 270 |
| MS.gene50846.t1 | MTR_3g005420 | 54.023 | 261 | 83 | 2 | 16 | 276 | 265 | 488 | 2.36e-89 | 274 |
| MS.gene50846.t1 | MTR_3g005420 | 54.275 | 269 | 97 | 4 | 1 | 267 | 1 | 245 | 1.31e-84 | 261 |
| MS.gene50846.t1 | MTR_3g005440 | 59.821 | 224 | 83 | 1 | 5 | 228 | 226 | 442 | 4.63e-85 | 261 |
| MS.gene50846.t1 | MTR_3g005440 | 49.787 | 235 | 65 | 3 | 35 | 267 | 34 | 217 | 1.87e-61 | 200 |
| MS.gene50846.t1 | MTR_3g005495 | 53.725 | 255 | 97 | 6 | 16 | 268 | 238 | 473 | 1.39e-80 | 251 |
| MS.gene50846.t1 | MTR_3g005495 | 52.301 | 239 | 81 | 4 | 36 | 273 | 28 | 234 | 5.15e-73 | 231 |
| MS.gene50846.t1 | MTR_3g098790 | 30.405 | 296 | 159 | 10 | 20 | 273 | 12 | 302 | 4.49e-32 | 120 |
| MS.gene50846.t1 | MTR_7g050710 | 30.565 | 301 | 160 | 10 | 20 | 273 | 12 | 310 | 2.74e-31 | 119 |
| MS.gene50846.t1 | MTR_1g015350 | 37.647 | 255 | 76 | 8 | 1 | 253 | 1 | 174 | 1.29e-29 | 110 |
| MS.gene50846.t1 | MTR_1g034240 | 49.495 | 99 | 50 | 0 | 21 | 119 | 7 | 105 | 2.78e-29 | 115 |
| MS.gene50846.t1 | MTR_1g034240 | 36.364 | 132 | 71 | 4 | 147 | 271 | 268 | 393 | 5.06e-16 | 77.8 |
| MS.gene50846.t1 | MTR_3g061310 | 29.252 | 294 | 168 | 9 | 5 | 269 | 3 | 285 | 6.63e-28 | 108 |
| MS.gene50846.t1 | MTR_7g050560 | 26.207 | 290 | 170 | 5 | 20 | 273 | 12 | 293 | 1.63e-27 | 108 |
| MS.gene50846.t1 | MTR_3g061320 | 31.010 | 287 | 143 | 11 | 20 | 269 | 11 | 279 | 3.45e-27 | 107 |
| MS.gene50846.t1 | MTR_3g061370 | 28.975 | 283 | 157 | 7 | 21 | 269 | 9 | 281 | 8.06e-27 | 105 |
| MS.gene50846.t1 | MTR_7g050580 | 28.070 | 285 | 171 | 8 | 20 | 273 | 12 | 293 | 8.46e-27 | 106 |
| MS.gene50846.t1 | MTR_3g061350 | 29.333 | 300 | 159 | 10 | 5 | 269 | 3 | 284 | 4.57e-26 | 103 |
| MS.gene50846.t1 | MTR_4g068320 | 42.991 | 107 | 61 | 0 | 21 | 127 | 6 | 112 | 8.31e-26 | 105 |
| MS.gene50846.t1 | MTR_4g068320 | 30.729 | 192 | 101 | 6 | 104 | 273 | 210 | 391 | 8.03e-17 | 80.1 |
| MS.gene50846.t1 | MTR_3g061340 | 31.227 | 269 | 153 | 10 | 21 | 266 | 12 | 271 | 2.02e-25 | 102 |
| MS.gene50846.t1 | MTR_0152s0100 | 42.982 | 114 | 62 | 1 | 161 | 274 | 2 | 112 | 2.09e-24 | 95.1 |
| MS.gene50846.t1 | MTR_0152s0100 | 42.982 | 114 | 62 | 1 | 161 | 274 | 2 | 112 | 2.09e-24 | 95.1 |
| MS.gene50846.t1 | MTR_8g103940 | 24.679 | 312 | 174 | 7 | 12 | 271 | 30 | 332 | 1.17e-23 | 100 |
| MS.gene50846.t1 | MTR_1g034210 | 47.778 | 90 | 47 | 0 | 21 | 110 | 7 | 96 | 2.30e-23 | 97.4 |
| MS.gene50846.t1 | MTR_1g034210 | 47.778 | 90 | 47 | 0 | 21 | 110 | 7 | 96 | 4.97e-23 | 97.4 |
| MS.gene50846.t1 | MTR_1g034210 | 33.871 | 124 | 69 | 4 | 155 | 271 | 242 | 359 | 4.88e-12 | 65.9 |
| MS.gene50846.t1 | MTR_5g044670 | 24.490 | 294 | 178 | 7 | 21 | 273 | 16 | 306 | 3.64e-22 | 94.4 |
| MS.gene50846.t1 | MTR_7g050590 | 25.172 | 290 | 156 | 7 | 37 | 273 | 2 | 283 | 1.44e-21 | 92.0 |
| MS.gene50846.t1 | MTR_1g108780 | 25.260 | 289 | 154 | 8 | 36 | 271 | 12 | 291 | 1.34e-20 | 91.3 |
| MS.gene50846.t1 | MTR_3g061330 | 29.703 | 202 | 104 | 5 | 5 | 179 | 3 | 193 | 1.78e-20 | 88.2 |
| MS.gene50846.t1 | MTR_3g061290 | 39.316 | 117 | 68 | 2 | 20 | 136 | 11 | 124 | 7.09e-20 | 85.5 |
| MS.gene50846.t1 | MTR_1g035460 | 25.338 | 296 | 151 | 9 | 37 | 271 | 2 | 288 | 4.51e-19 | 86.3 |
| MS.gene50846.t1 | MTR_7g050720 | 36.634 | 101 | 64 | 0 | 20 | 120 | 9 | 109 | 9.30e-19 | 84.7 |
| MS.gene50846.t1 | MTR_4g119990 | 25.347 | 288 | 160 | 11 | 20 | 256 | 14 | 297 | 4.47e-16 | 77.8 |
| MS.gene50846.t1 | MTR_6g043890 | 35.577 | 104 | 66 | 1 | 20 | 122 | 14 | 117 | 9.95e-16 | 76.3 |
| MS.gene50846.t1 | MTR_7g050640 | 32.353 | 102 | 69 | 0 | 20 | 121 | 12 | 113 | 2.89e-14 | 68.2 |
| MS.gene50846.t1 | MTR_3g061220 | 34.783 | 115 | 53 | 3 | 5 | 119 | 3 | 95 | 4.63e-14 | 67.4 |
| MS.gene50846.t1 | MTR_1g050845 | 23.792 | 269 | 188 | 7 | 19 | 274 | 7 | 271 | 7.26e-14 | 72.0 |
| MS.gene50846.t1 | MTR_1g035440 | 30.769 | 104 | 71 | 1 | 20 | 122 | 14 | 117 | 7.71e-13 | 67.0 |
| MS.gene50846.t1 | MTR_1g021290 | 38.144 | 97 | 59 | 1 | 18 | 114 | 25 | 120 | 1.53e-12 | 67.0 |
| MS.gene50846.t1 | MTR_1g021400 | 36.082 | 97 | 62 | 0 | 18 | 114 | 27 | 123 | 3.21e-12 | 66.2 |
| MS.gene50846.t1 | MTR_1g035480 | 28.226 | 124 | 76 | 3 | 20 | 143 | 16 | 126 | 1.31e-11 | 62.4 |
| MS.gene50846.t1 | MTR_1g035620 | 20.863 | 278 | 193 | 6 | 21 | 274 | 9 | 283 | 1.45e-11 | 64.7 |
| MS.gene50846.t1 | MTR_1g035510 | 31.633 | 98 | 64 | 2 | 37 | 134 | 2 | 96 | 2.84e-11 | 62.0 |
| MS.gene50846.t1 | MTR_1g021380 | 34.021 | 97 | 60 | 1 | 18 | 110 | 14 | 110 | 6.56e-11 | 62.4 |
| MS.gene50846.t1 | MTR_1g021320 | 33.333 | 93 | 62 | 0 | 18 | 110 | 22 | 114 | 6.59e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50846.t1 | AT3G18990 | 41.667 | 120 | 66 | 1 | 21 | 140 | 6 | 121 | 6.42e-25 | 102 |
| MS.gene50846.t1 | AT3G18990 | 36.296 | 135 | 74 | 4 | 147 | 275 | 213 | 341 | 1.13e-15 | 76.3 |
| MS.gene50846.t1 | AT3G18990 | 41.667 | 120 | 66 | 1 | 21 | 140 | 6 | 121 | 1.64e-24 | 101 |
| MS.gene50846.t1 | AT3G18990 | 36.029 | 136 | 75 | 4 | 147 | 276 | 213 | 342 | 2.70e-15 | 75.5 |
| MS.gene50846.t1 | AT1G49475 | 41.667 | 120 | 69 | 1 | 10 | 129 | 23 | 141 | 2.11e-23 | 94.7 |
| MS.gene50846.t1 | AT3G18960 | 36.975 | 119 | 72 | 1 | 3 | 121 | 15 | 130 | 3.31e-21 | 89.0 |
| MS.gene50846.t1 | AT3G18960 | 36.975 | 119 | 72 | 1 | 3 | 121 | 15 | 130 | 4.27e-21 | 89.0 |
| MS.gene50846.t1 | AT4G01580 | 37.383 | 107 | 67 | 0 | 15 | 121 | 24 | 130 | 9.97e-21 | 87.4 |
| MS.gene50846.t1 | AT1G49480 | 36.296 | 135 | 74 | 4 | 147 | 275 | 98 | 226 | 4.89e-16 | 75.5 |
| MS.gene50846.t1 | AT1G49480 | 36.296 | 135 | 74 | 4 | 147 | 275 | 98 | 226 | 4.89e-16 | 75.5 |
| MS.gene50846.t1 | AT1G49480 | 36.296 | 135 | 74 | 4 | 147 | 275 | 98 | 226 | 4.89e-16 | 75.5 |
| MS.gene50846.t1 | AT3G18960 | 38.372 | 86 | 53 | 0 | 36 | 121 | 8 | 93 | 1.14e-15 | 73.6 |
| MS.gene50846.t1 | AT4G31640 | 24.427 | 262 | 157 | 11 | 20 | 271 | 13 | 243 | 1.24e-13 | 70.5 |
Find 50 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTTCCCATTAGAATTT+TGG | 0.142530 | 3.4:+1072265 | None:intergenic |
| AATGCTCTCCCTCAGAATTT+TGG | 0.165314 | 3.4:+1072105 | None:intergenic |
| AAGTGAGAGTCATGAGAAAA+AGG | 0.253305 | 3.4:-1072369 | MS.gene50846:CDS |
| GATGAGTTTATAACAAGATT+TGG | 0.275708 | 3.4:-1072689 | MS.gene50846:CDS |
| TTTGCAGAATACTATTCTAT+AGG | 0.313465 | 3.4:-1072557 | MS.gene50846:CDS |
| CATTGCAGATGATGATGATT+TGG | 0.324669 | 3.4:+1072055 | None:intergenic |
| TTGCAGAATACTATTCTATA+GGG | 0.341018 | 3.4:-1072556 | MS.gene50846:CDS |
| AGGGGCAACAATCTGTCTTA+TGG | 0.381060 | 3.4:-1072002 | MS.gene50846:CDS |
| TTCCTGTGTTTCAAATATGA+AGG | 0.394296 | 3.4:-1072524 | MS.gene50846:CDS |
| CTCTGTCCTGCCACCGGCGG+CGG | 0.394380 | 3.4:-1073735 | MS.gene50846:CDS |
| AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3.4:+1072692 | None:intergenic |
| TTCAAAACTCAAAGTACAAA+TGG | 0.427538 | 3.4:-1072443 | MS.gene50846:CDS |
| GGGATTTACTATATTTCAAA+GGG | 0.437078 | 3.4:-1072021 | MS.gene50846:CDS |
| AAATTCTGAGGGAGAGCATT+GGG | 0.443772 | 3.4:-1072102 | MS.gene50846:CDS |
| ATACTTCCCTCACCCATTCA+TGG | 0.444076 | 3.4:-1073683 | MS.gene50846:CDS |
| CTTTCTCCGCCGCCGGTGGC+AGG | 0.463519 | 3.4:+1073729 | None:intergenic |
| ACTCTCACTTGTTTCAACCT+TGG | 0.466400 | 3.4:+1072382 | None:intergenic |
| CTGTTCCTGATGGTCGTGAT+TGG | 0.473060 | 3.4:-1072637 | MS.gene50846:CDS |
| CATCTGCAATGATAATATCA+AGG | 0.473557 | 3.4:-1072043 | MS.gene50846:CDS |
| GGGGATTTACTATATTTCAA+AGG | 0.484674 | 3.4:-1072022 | MS.gene50846:CDS |
| AGTGTCATAGTCGTAGAAAA+AGG | 0.486595 | 3.4:-1072406 | MS.gene50846:CDS |
| TTGAAATCTTTCTCCGCCGC+CGG | 0.497487 | 3.4:+1073722 | None:intergenic |
| ATTCTCCAATCACGACCATC+AGG | 0.498836 | 3.4:+1072632 | None:intergenic |
| AATTCTAATGGGAAATTATG+TGG | 0.499901 | 3.4:-1072261 | MS.gene50846:intron |
| GTGGCAGGACAGAGCTTCTC+CGG | 0.500731 | 3.4:+1073744 | None:intergenic |
| CCCCTTCATATTTGAAACAC+AGG | 0.508323 | 3.4:+1072522 | None:intergenic |
| GAATACTATTCTATAGGGTA+TGG | 0.523564 | 3.4:-1072551 | MS.gene50846:CDS |
| AAAATTCTGAGGGAGAGCAT+TGG | 0.523796 | 3.4:-1072103 | MS.gene50846:CDS |
| TCCTGTGTTTCAAATATGAA+GGG | 0.529278 | 3.4:-1072523 | MS.gene50846:CDS |
| AACAAACAATGCAGGCTCGC+CGG | 0.535855 | 3.4:-1073763 | None:intergenic |
| AATGTGCAGTATGTTAATGC+TGG | 0.551027 | 3.4:-1072170 | MS.gene50846:intron |
| ATCTGCAATGATAATATCAA+GGG | 0.551519 | 3.4:-1072042 | MS.gene50846:CDS |
| TACTAATTGAGTGCCATGAA+TGG | 0.560737 | 3.4:+1073670 | None:intergenic |
| GAGAAGCTCTGTCCTGCCAC+CGG | 0.575070 | 3.4:-1073741 | MS.gene50846:CDS |
| AAATCTTTCTCCGCCGCCGG+TGG | 0.575868 | 3.4:+1073725 | None:intergenic |
| ACTAATTGAGTGCCATGAAT+GGG | 0.579633 | 3.4:+1073671 | None:intergenic |
| TGATGGTCGTGATTGGAGAA+TGG | 0.589995 | 3.4:-1072630 | MS.gene50846:CDS |
| CCTGTGTTTCAAATATGAAG+GGG | 0.591078 | 3.4:-1072522 | MS.gene50846:CDS |
| TGAGCTGATCAATAAGAAGC+CGG | 0.592920 | 3.4:-1071964 | MS.gene50846:CDS |
| TGTAAAGCTCCAAAATTCTG+AGG | 0.595481 | 3.4:-1072114 | MS.gene50846:CDS |
| ACATGCTTCTGAAAGAGCAA+AGG | 0.603971 | 3.4:-1072330 | MS.gene50846:CDS |
| TTGAGTGCCATGAATGGGTG+AGG | 0.609441 | 3.4:+1073676 | None:intergenic |
| GTAAAGCTCCAAAATTCTGA+GGG | 0.614548 | 3.4:-1072113 | MS.gene50846:CDS |
| TTCATATTTGAAACACAGGA+AGG | 0.623348 | 3.4:+1072526 | None:intergenic |
| GCTACAATTACTGTTCCTGA+TGG | 0.638622 | 3.4:-1072647 | MS.gene50846:CDS |
| AAGCTCTGTCCTGCCACCGG+CGG | 0.650688 | 3.4:-1073738 | MS.gene50846:CDS |
| AGAATGGAACTGAAGAAATG+CGG | 0.686385 | 3.4:-1072614 | MS.gene50846:CDS |
| TCTGCAATGATAATATCAAG+GGG | 0.693916 | 3.4:-1072041 | MS.gene50846:CDS |
| TGAGTGCCATGAATGGGTGA+GGG | 0.700904 | 3.4:+1073677 | None:intergenic |
| GGATTTACTATATTTCAAAG+GGG | 0.704196 | 3.4:-1072020 | MS.gene50846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTCATATTAAAAACAATTA+AGG | + | chr3.4:1072455-1072474 | None:intergenic | 15.0% |
| !! | TAAGTAAACTTAGTAGAAAA+AGG | + | chr3.4:1072767-1072786 | None:intergenic | 20.0% |
| !! | TTTAATATGAAGCTAGAATT+AGG | - | chr3.4:1072463-1072482 | MS.gene50846:CDS | 20.0% |
| !!! | ACATTTGAGATTTACATAAT+TGG | + | chr3.4:1072895-1072914 | None:intergenic | 20.0% |
| !!! | AGAATTTTGGAACAAAAATA+AGG | + | chr3.4:1073397-1073416 | None:intergenic | 20.0% |
| !!! | ATAATTTCCCATTAGAATTT+TGG | + | chr3.4:1073410-1073429 | None:intergenic | 20.0% |
| !!! | GAATTTTGGAACAAAAATAA+GGG | + | chr3.4:1073396-1073415 | None:intergenic | 20.0% |
| !!! | GTTTTTTGGATTAAATTCTT+TGG | + | chr3.4:1073374-1073393 | None:intergenic | 20.0% |
| !!! | TAGTTTAATTTGTGAATTGT+GGG | - | chr3.4:1072591-1072610 | MS.gene50846:CDS | 20.0% |
| !!! | TTAGTTTAATTTGTGAATTG+TGG | - | chr3.4:1072590-1072609 | MS.gene50846:CDS | 20.0% |
| !!! | TTTGAGACATAAACATATAT+AGG | + | chr3.4:1072066-1072085 | None:intergenic | 20.0% |
| !!! | TTTTGTTCCAAAATTCTAAT+GGG | - | chr3.4:1073400-1073419 | MS.gene50846:intron | 20.0% |
| !!! | TTTTTGTTCCAAAATTCTAA+TGG | - | chr3.4:1073399-1073418 | MS.gene50846:intron | 20.0% |
| ! | AAAGTCTCTTTATGATTGTT+TGG | - | chr3.4:1072636-1072655 | MS.gene50846:CDS | 25.0% |
| ! | AAGTCTCTTTATGATTGTTT+GGG | - | chr3.4:1072637-1072656 | MS.gene50846:CDS | 25.0% |
| ! | AATTCTAATGGGAAATTATG+TGG | - | chr3.4:1073411-1073430 | MS.gene50846:intron | 25.0% |
| ! | AATTTGGTCCTATACTATAA+CGG | - | chr3.4:1072931-1072950 | MS.gene50846:intron | 25.0% |
| ! | ATCTGCAATGATAATATCAA+GGG | - | chr3.4:1073630-1073649 | MS.gene50846:intron | 25.0% |
| ! | GATGAGTTTATAACAAGATT+TGG | - | chr3.4:1072983-1073002 | MS.gene50846:intron | 25.0% |
| ! | GGATTTACTATATTTCAAAG+GGG | - | chr3.4:1073652-1073671 | MS.gene50846:intron | 25.0% |
| ! | GGGATTTACTATATTTCAAA+GGG | - | chr3.4:1073651-1073670 | MS.gene50846:intron | 25.0% |
| ! | TAAACTTAGTAGAAAAAGGA+AGG | + | chr3.4:1072763-1072782 | None:intergenic | 25.0% |
| ! | TAAGTTTACTTATCTTCGTT+TGG | - | chr3.4:1072775-1072794 | MS.gene50846:intron | 25.0% |
| ! | TTAGTGTTTCTTTCATTCAA+AGG | - | chr3.4:1072285-1072304 | MS.gene50846:CDS | 25.0% |
| ! | TTCAAAACTCAAAGTACAAA+TGG | - | chr3.4:1073229-1073248 | MS.gene50846:intron | 25.0% |
| ! | TTGCAGAATACTATTCTATA+GGG | - | chr3.4:1073116-1073135 | MS.gene50846:intron | 25.0% |
| ! | TTTGCAGAATACTATTCTAT+AGG | - | chr3.4:1073115-1073134 | MS.gene50846:intron | 25.0% |
| !! | AATCTTGTTATAAACTCATC+TGG | + | chr3.4:1072983-1073002 | None:intergenic | 25.0% |
| !!! | ACGTTTACTTTTGTAACAAA+TGG | - | chr3.4:1073086-1073105 | MS.gene50846:intron | 25.0% |
| !!! | GAACAAAAATAAGGGTTTTT+TGG | + | chr3.4:1073388-1073407 | None:intergenic | 25.0% |
| !!! | TCAAATAGTAGTGTTTTTTC+TGG | - | chr3.4:1072081-1072100 | MS.gene50846:CDS | 25.0% |
| !!! | TTTGTACTTTGAGTTTTGAA+TGG | + | chr3.4:1073229-1073248 | None:intergenic | 25.0% |
| AATTGAACCAAATCGAAACT+AGG | - | chr3.4:1072854-1072873 | MS.gene50846:intron | 30.0% | |
| AGTCTCTTTATGATTGTTTG+GGG | - | chr3.4:1072638-1072657 | MS.gene50846:CDS | 30.0% | |
| ATGATGACATGTTCTGTTTA+AGG | - | chr3.4:1072732-1072751 | MS.gene50846:intron | 30.0% | |
| CATCTGCAATGATAATATCA+AGG | - | chr3.4:1073629-1073648 | MS.gene50846:intron | 30.0% | |
| GAATACTATTCTATAGGGTA+TGG | - | chr3.4:1073121-1073140 | MS.gene50846:intron | 30.0% | |
| GGGGATTTACTATATTTCAA+AGG | - | chr3.4:1073650-1073669 | MS.gene50846:intron | 30.0% | |
| TCCTGTGTTTCAAATATGAA+GGG | - | chr3.4:1073149-1073168 | MS.gene50846:intron | 30.0% | |
| TCTGCAATGATAATATCAAG+GGG | - | chr3.4:1073631-1073650 | MS.gene50846:intron | 30.0% | |
| TTCCTGTGTTTCAAATATGA+AGG | - | chr3.4:1073148-1073167 | MS.gene50846:intron | 30.0% | |
| TTGAATTGAAAGTGACTACA+TGG | - | chr3.4:1072525-1072544 | MS.gene50846:CDS | 30.0% | |
| ! | AGTATAGGACCAAATTTTAG+AGG | + | chr3.4:1072927-1072946 | None:intergenic | 30.0% |
| ! | AGTCACTTTCAATTCAACTA+TGG | + | chr3.4:1072522-1072541 | None:intergenic | 30.0% |
| ! | GAGTTAGTTTAGTGTATGTT+TGG | - | chr3.4:1072339-1072358 | MS.gene50846:CDS | 30.0% |
| ! | GTCACTTTCAATTCAACTAT+GGG | + | chr3.4:1072521-1072540 | None:intergenic | 30.0% |
| ! | TTCATATTTGAAACACAGGA+AGG | + | chr3.4:1073149-1073168 | None:intergenic | 30.0% |
| !! | TGTATGTTTGGTTTCACTTT+TGG | - | chr3.4:1072351-1072370 | MS.gene50846:CDS | 30.0% |
| !! | TTTGGTTTCACTTTTGGATA+AGG | - | chr3.4:1072357-1072376 | MS.gene50846:CDS | 30.0% |
| AACCAGATTCACAAAAGCAA+TGG | + | chr3.4:1072207-1072226 | None:intergenic | 35.0% | |
| AAGTGAGAGTCATGAGAAAA+AGG | - | chr3.4:1073303-1073322 | MS.gene50846:intron | 35.0% | |
| AATGTGCAGTATGTTAATGC+TGG | - | chr3.4:1073502-1073521 | MS.gene50846:intron | 35.0% | |
| AATTGAAAGTGACTACATGG+TGG | - | chr3.4:1072528-1072547 | MS.gene50846:CDS | 35.0% | |
| ACTAATTGAGTGCCATGAAT+GGG | + | chr3.4:1072004-1072023 | None:intergenic | 35.0% | |
| AGAATGGAACTGAAGAAATG+CGG | - | chr3.4:1073058-1073077 | MS.gene50846:intron | 35.0% | |
| AGTGAGAGTCATGAGAAAAA+GGG | - | chr3.4:1073304-1073323 | MS.gene50846:intron | 35.0% | |
| AGTGTCATAGTCGTAGAAAA+AGG | - | chr3.4:1073266-1073285 | MS.gene50846:intron | 35.0% | |
| CAATCATAAAGAGACTTTCG+AGG | + | chr3.4:1072634-1072653 | None:intergenic | 35.0% | |
| CAGTTCATCCGTTATAGTAT+AGG | + | chr3.4:1072942-1072961 | None:intergenic | 35.0% | |
| CCTGTGTTTCAAATATGAAG+GGG | - | chr3.4:1073150-1073169 | MS.gene50846:intron | 35.0% | |
| GTAAAGCTCCAAAATTCTGA+GGG | - | chr3.4:1073559-1073578 | MS.gene50846:intron | 35.0% | |
| TAATGGGAAATTATGTGGTG+AGG | - | chr3.4:1073416-1073435 | MS.gene50846:intron | 35.0% | |
| TACTAATTGAGTGCCATGAA+TGG | + | chr3.4:1072005-1072024 | None:intergenic | 35.0% | |
| TATTGCTCCTAGTTTCGATT+TGG | + | chr3.4:1072864-1072883 | None:intergenic | 35.0% | |
| TGTAAAGCTCCAAAATTCTG+AGG | - | chr3.4:1073558-1073577 | MS.gene50846:intron | 35.0% | |
| ! | ATTGTGACTTTTAGCACATC+CGG | + | chr3.4:1073730-1073749 | None:intergenic | 35.0% |
| ! | CATTGCAGATGATGATGATT+TGG | + | chr3.4:1073620-1073639 | None:intergenic | 35.0% |
| !! | ATAGGACCAAATTTTAGAGG+AGG | + | chr3.4:1072924-1072943 | None:intergenic | 35.0% |
| !! | CTTATCTTCGTTTGGTTCTA+TGG | - | chr3.4:1072783-1072802 | MS.gene50846:intron | 35.0% |
| !! | TAGGACCAAATTTTAGAGGA+GGG | + | chr3.4:1072923-1072942 | None:intergenic | 35.0% |
| !!! | TCAGAATTTTGGAGCTTTAC+AGG | + | chr3.4:1073559-1073578 | None:intergenic | 35.0% |
| ACTCTCACTTGTTTCAACCT+TGG | + | chr3.4:1073293-1073312 | None:intergenic | 40.0% | |
| AGCAATGGCAAAGAGAGTTT+CGG | + | chr3.4:1072192-1072211 | None:intergenic | 40.0% | |
| GCTACAATTACTGTTCCTGA+TGG | - | chr3.4:1073025-1073044 | MS.gene50846:intron | 40.0% | |
| TAGTCGTAGAAAAAGGTCCA+AGG | - | chr3.4:1073273-1073292 | MS.gene50846:intron | 40.0% | |
| TGAGCTGATCAATAAGAAGC+CGG | - | chr3.4:1073708-1073727 | MS.gene50846:CDS | 40.0% | |
| ! | AAAATTCTGAGGGAGAGCAT+TGG | - | chr3.4:1073569-1073588 | MS.gene50846:intron | 40.0% |
| ! | AATGCTCTCCCTCAGAATTT+TGG | + | chr3.4:1073570-1073589 | None:intergenic | 40.0% |
| ! | ACATGCTTCTGAAAGAGCAA+AGG | - | chr3.4:1073342-1073361 | MS.gene50846:intron | 40.0% |
| ! | CCCCTTCATATTTGAAACAC+AGG | + | chr3.4:1073153-1073172 | None:intergenic | 40.0% |
| !! | AAATTCTGAGGGAGAGCATT+GGG | - | chr3.4:1073570-1073589 | MS.gene50846:intron | 40.0% |
| !! | TGCCATTGCTTTTGTGAATC+TGG | - | chr3.4:1072202-1072221 | MS.gene50846:intron | 40.0% |
| AGGGGCAACAATCTGTCTTA+TGG | - | chr3.4:1073670-1073689 | MS.gene50846:intron | 45.0% | |
| ATACTTCCCTCACCCATTCA+TGG | - | chr3.4:1071989-1072008 | MS.gene50846:CDS | 45.0% | |
| ATTCTCCAATCACGACCATC+AGG | + | chr3.4:1073043-1073062 | None:intergenic | 45.0% | |
| TGATGGTCGTGATTGGAGAA+TGG | - | chr3.4:1073042-1073061 | MS.gene50846:intron | 45.0% | |
| !! | GTCAGCCCTCCTCTAAAATT+TGG | - | chr3.4:1072915-1072934 | MS.gene50846:intron | 45.0% |
| CTGTTCCTGATGGTCGTGAT+TGG | - | chr3.4:1073035-1073054 | MS.gene50846:intron | 50.0% | |
| TGAGTGCCATGAATGGGTGA+GGG | + | chr3.4:1071998-1072017 | None:intergenic | 50.0% | |
| TTGAAATCTTTCTCCGCCGC+CGG | + | chr3.4:1071953-1071972 | None:intergenic | 50.0% | |
| TTGAGTGCCATGAATGGGTG+AGG | + | chr3.4:1071999-1072018 | None:intergenic | 50.0% | |
| AAATCTTTCTCCGCCGCCGG+TGG | + | chr3.4:1071950-1071969 | None:intergenic | 60.0% | |
| GAGAAGCTCTGTCCTGCCAC+CGG | - | chr3.4:1071931-1071950 | MS.gene50846:CDS | 60.0% | |
| GTGGCAGGACAGAGCTTCTC+CGG | + | chr3.4:1071931-1071950 | None:intergenic | 60.0% | |
| AAGCTCTGTCCTGCCACCGG+CGG | - | chr3.4:1071934-1071953 | MS.gene50846:CDS | 65.0% | |
| CTCTGTCCTGCCACCGGCGG+CGG | - | chr3.4:1071937-1071956 | MS.gene50846:CDS | 75.0% | |
| CTTTCTCCGCCGCCGGTGGC+AGG | + | chr3.4:1071946-1071965 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 1071917 | 1073777 | 1071917 | ID=MS.gene50846 |
| chr3.4 | mRNA | 1071917 | 1073777 | 1071917 | ID=MS.gene50846.t1;Parent=MS.gene50846 |
| chr3.4 | exon | 1073673 | 1073777 | 1073673 | ID=MS.gene50846.t1.exon1;Parent=MS.gene50846.t1 |
| chr3.4 | CDS | 1073673 | 1073777 | 1073673 | ID=cds.MS.gene50846.t1;Parent=MS.gene50846.t1 |
| chr3.4 | exon | 1072262 | 1072720 | 1072262 | ID=MS.gene50846.t1.exon2;Parent=MS.gene50846.t1 |
| chr3.4 | CDS | 1072262 | 1072720 | 1072262 | ID=cds.MS.gene50846.t1;Parent=MS.gene50846.t1 |
| chr3.4 | exon | 1071917 | 1072183 | 1071917 | ID=MS.gene50846.t1.exon3;Parent=MS.gene50846.t1 |
| chr3.4 | CDS | 1071917 | 1072183 | 1071917 | ID=cds.MS.gene50846.t1;Parent=MS.gene50846.t1 |
| Gene Sequence |
| Protein sequence |
