AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50937

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50937.t1 MTR_3g022830 96.394 416 15 0 1 416 23 438 0.0 832
MS.gene50937.t1 MTR_5g009080 55.660 424 177 4 4 416 57 480 2.50e-164 471
MS.gene50937.t1 MTR_4g076140 51.064 423 197 4 4 416 49 471 1.20e-153 443
MS.gene50937.t1 MTR_3g022580 72.251 191 22 2 226 416 26 185 3.69e-93 278
MS.gene50937.t1 MTR_5g097480 30.549 419 231 6 4 414 178 544 1.60e-60 205
MS.gene50937.t1 MTR_3g022005 91.667 96 8 0 321 416 32 127 4.25e-59 189
MS.gene50937.t1 MTR_7g027190 29.535 430 227 6 4 414 301 673 6.00e-59 204
MS.gene50937.t1 MTR_1g029420 29.736 417 237 4 4 414 226 592 1.47e-58 201
MS.gene50937.t1 MTR_2g082090 30.529 416 233 6 4 413 213 578 2.88e-55 192
MS.gene50937.t1 MTR_5g094450 27.446 419 248 6 4 414 162 532 1.42e-54 189
MS.gene50937.t1 MTR_3g056110 28.058 417 244 6 4 414 176 542 8.49e-54 187
MS.gene50937.t1 MTR_3g089055 28.058 417 244 4 4 414 199 565 8.58e-54 188
MS.gene50937.t1 MTR_3g089055 28.058 417 244 4 4 414 204 570 8.97e-54 188
MS.gene50937.t1 MTR_3g027430 55.500 200 30 6 4 203 140 280 4.72e-53 180
MS.gene50937.t1 MTR_3g027430 57.955 88 3 1 329 416 279 332 3.65e-23 99.8
MS.gene50937.t1 MTR_7g074650 29.157 415 225 8 6 414 441 792 4.18e-52 187
MS.gene50937.t1 MTR_4g133660 27.316 421 241 8 4 413 176 542 2.25e-47 170
MS.gene50937.t1 MTR_4g102790 27.078 421 244 8 4 413 293 661 5.44e-46 168
MS.gene50937.t1 MTR_3g021320 57.333 150 36 3 103 249 1 125 1.75e-45 154
MS.gene50937.t1 MTR_8g442410 27.934 426 236 9 4 414 156 525 5.48e-45 164
MS.gene50937.t1 MTR_4g064160 28.230 418 241 8 4 413 317 683 1.25e-44 164
MS.gene50937.t1 MTR_2g097467 28.469 418 237 8 4 413 290 653 1.57e-44 164
MS.gene50937.t1 MTR_2g097410 26.555 418 250 6 4 413 372 740 1.75e-44 165
MS.gene50937.t1 MTR_2g026250 26.014 419 251 7 4 414 229 596 2.64e-43 160
MS.gene50937.t1 MTR_4g064200 27.512 418 242 7 4 413 285 649 3.87e-43 160
MS.gene50937.t1 MTR_4g064150 27.423 423 242 9 4 413 362 732 4.55e-42 158
MS.gene50937.t1 MTR_7g062120 27.273 418 247 6 4 414 373 740 5.57e-42 157
MS.gene50937.t1 MTR_2g097310 26.969 419 243 8 4 413 273 637 1.38e-41 155
MS.gene50937.t1 MTR_2g097473 27.818 417 241 7 4 413 290 653 2.58e-41 155
MS.gene50937.t1 MTR_2g097350 27.619 420 239 10 4 413 275 639 4.36e-41 154
MS.gene50937.t1 MTR_2g097390 25.542 415 254 7 4 413 276 640 4.48e-41 154
MS.gene50937.t1 MTR_4g104020 26.241 423 248 7 4 414 150 520 6.15e-41 152
MS.gene50937.t1 MTR_4g064120 26.794 418 243 10 4 409 255 621 2.64e-40 152
MS.gene50937.t1 MTR_4g064180 26.619 417 245 9 4 409 255 621 1.14e-39 150
MS.gene50937.t1 MTR_3g025350 42.453 212 38 5 154 364 1 129 1.40e-39 138
MS.gene50937.t1 MTR_2g097463 27.338 417 243 7 4 413 291 654 1.31e-38 147
MS.gene50937.t1 MTR_4g076020 28.641 412 222 12 6 414 87 429 5.29e-38 142
MS.gene50937.t1 MTR_4g097080 23.821 424 256 8 4 414 134 503 5.90e-36 138
MS.gene50937.t1 MTR_2g034280 28.037 428 237 9 4 415 204 576 1.45e-35 138
MS.gene50937.t1 MTR_4g077760 27.251 422 236 11 4 414 194 555 1.81e-35 137
MS.gene50937.t1 MTR_1g069725 26.077 418 242 10 4 416 110 465 2.08e-35 136
MS.gene50937.t1 MTR_2g034250 27.506 429 241 8 4 415 211 586 3.34e-35 137
MS.gene50937.t1 MTR_2g097380 24.939 409 227 7 8 413 229 560 1.25e-34 135
MS.gene50937.t1 MTR_2g089100 25.943 424 266 10 4 413 53 442 3.93e-33 129
MS.gene50937.t1 MTR_2g034260 26.977 430 241 9 4 415 211 585 6.24e-33 130
MS.gene50937.t1 MTR_5g015490 23.349 424 264 8 4 414 115 490 5.52e-32 127
MS.gene50937.t1 MTR_1g106590 50.000 110 55 0 5 114 132 241 5.45e-30 119
MS.gene50937.t1 MTR_1g106590 48.936 94 45 2 229 319 247 340 1.46e-14 74.7
MS.gene50937.t1 MTR_5g058860 24.190 401 236 7 29 413 148 496 2.57e-29 119
MS.gene50937.t1 MTR_3g065980 39.752 161 83 3 269 415 381 541 1.78e-28 117
MS.gene50937.t1 MTR_3g065980 31.100 209 130 4 4 207 173 372 5.96e-28 116
MS.gene50937.t1 MTR_3g072710 24.374 439 250 13 1 413 117 499 5.63e-28 115
MS.gene50937.t1 MTR_1g096030 24.153 443 248 14 2 414 75 459 2.38e-27 113
MS.gene50937.t1 MTR_4g095500 24.537 432 280 10 4 413 60 467 2.65e-26 110
MS.gene50937.t1 MTR_5g015950 22.811 434 287 10 4 413 36 445 6.76e-24 103
MS.gene50937.t1 MTR_3g053270 22.811 434 287 10 4 413 36 445 6.76e-24 103
MS.gene50937.t1 MTR_7g057230 25.714 420 244 13 4 413 295 656 2.79e-23 102
MS.gene50937.t1 MTR_3g025340 73.770 61 16 0 61 121 9 69 1.26e-22 91.3
MS.gene50937.t1 MTR_7g109580 24.129 402 241 12 23 415 209 555 2.85e-22 99.4
MS.gene50937.t1 MTR_1g086970 24.561 399 226 13 34 415 139 479 2.02e-19 90.5
MS.gene50937.t1 MTR_3g021090 42.636 129 59 4 117 242 297 413 1.51e-18 87.4
MS.gene50937.t1 MTR_2g099110 22.529 435 255 11 4 414 75 451 3.68e-18 86.7
MS.gene50937.t1 MTR_6g047750 24.235 425 250 16 4 414 296 662 4.14e-18 87.0
MS.gene50937.t1 MTR_8g093070 23.797 395 226 13 30 413 165 495 1.95e-17 84.7
MS.gene50937.t1 MTR_0092s0100 31.915 141 94 1 4 144 376 514 5.22e-11 65.1
MS.gene50937.t1 MTR_0092s0100 31.915 141 94 1 4 144 373 511 5.35e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50937.t1 AT1G50420 50.472 424 199 4 4 416 58 481 1.26e-147 428
MS.gene50937.t1 AT1G66350 31.325 415 217 9 4 414 156 506 2.39e-63 212
MS.gene50937.t1 AT5G48150 30.216 417 236 4 4 414 123 490 3.35e-61 206
MS.gene50937.t1 AT5G48150 30.216 417 236 4 4 414 123 490 3.35e-61 206
MS.gene50937.t1 AT5G48150 30.216 417 236 4 4 414 123 490 3.35e-61 206
MS.gene50937.t1 AT5G48150 30.216 417 236 4 4 414 123 490 3.35e-61 206
MS.gene50937.t1 AT3G03450 29.481 424 226 10 4 415 184 546 1.13e-59 203
MS.gene50937.t1 AT1G50600 29.496 417 238 5 4 414 160 526 4.77e-57 196
MS.gene50937.t1 AT2G04890 30.340 412 234 6 4 414 54 413 7.30e-57 192
MS.gene50937.t1 AT1G50600 29.257 417 239 4 4 414 235 601 1.20e-56 196
MS.gene50937.t1 AT1G50600 29.257 417 239 4 4 414 231 597 1.57e-56 196
MS.gene50937.t1 AT1G14920 29.343 426 219 10 4 415 173 530 3.43e-55 191
MS.gene50937.t1 AT2G01570 28.504 421 229 8 4 415 225 582 1.43e-54 190
MS.gene50937.t1 AT4G17230 28.777 417 241 6 4 414 159 525 1.37e-51 181
MS.gene50937.t1 AT4G17230 28.777 417 241 6 4 414 159 525 1.37e-51 181
MS.gene50937.t1 AT3G54220 28.744 414 235 7 6 416 296 652 5.00e-51 182
MS.gene50937.t1 AT1G21450 28.947 418 240 7 4 414 226 593 5.92e-50 178
MS.gene50937.t1 AT1G63100 25.059 427 252 5 4 413 253 628 7.82e-45 164
MS.gene50937.t1 AT1G63100 25.059 427 252 5 4 413 278 653 1.04e-44 164
MS.gene50937.t1 AT2G29060 28.504 421 239 10 4 413 285 654 1.98e-43 161
MS.gene50937.t1 AT2G29060 28.504 421 239 10 4 413 322 691 2.79e-43 161
MS.gene50937.t1 AT1G07530 27.316 421 242 9 4 413 397 764 1.22e-42 160
MS.gene50937.t1 AT5G59450 28.504 421 241 8 4 414 228 598 1.16e-41 155
MS.gene50937.t1 AT3G46600 27.273 418 246 6 4 414 5 371 6.98e-39 144
MS.gene50937.t1 AT5G41920 27.644 416 237 9 4 414 44 400 9.54e-39 144
MS.gene50937.t1 AT3G46600 27.990 418 243 8 4 414 181 547 2.40e-37 143
MS.gene50937.t1 AT3G46600 27.990 418 243 8 4 414 213 579 6.81e-37 142
MS.gene50937.t1 AT1G07520 25.117 426 245 9 7 413 158 528 7.70e-36 138
MS.gene50937.t1 AT1G07520 25.117 426 245 9 7 413 158 528 7.70e-36 138
MS.gene50937.t1 AT1G55580 26.049 453 241 8 4 414 45 445 1.75e-35 136
MS.gene50937.t1 AT1G07520 25.117 426 245 9 7 413 322 692 2.93e-35 138
MS.gene50937.t1 AT1G07520 25.117 426 245 9 7 413 323 693 3.00e-35 138
MS.gene50937.t1 AT2G37650 25.837 418 251 7 4 414 336 701 9.66e-35 137
MS.gene50937.t1 AT2G37650 25.837 418 251 7 4 414 348 713 1.04e-34 136
MS.gene50937.t1 AT5G66770 26.950 423 238 9 4 414 221 584 2.54e-34 134
MS.gene50937.t1 AT2G29065 24.590 427 253 8 4 413 253 627 2.98e-32 129
MS.gene50937.t1 AT4G37650 23.112 437 256 12 4 414 147 529 7.06e-32 127
MS.gene50937.t1 AT3G50650 25.743 404 226 7 26 414 198 542 1.20e-31 126
MS.gene50937.t1 AT5G17490 30.769 208 133 5 4 207 161 361 3.26e-29 119
MS.gene50937.t1 AT5G17490 38.000 150 90 2 268 415 369 517 6.35e-26 110
MS.gene50937.t1 AT5G52510 23.611 432 249 9 4 414 269 640 6.87e-29 119
MS.gene50937.t1 AT3G49950 23.077 429 259 13 4 413 31 407 3.18e-24 103
MS.gene50937.t1 AT4G08250 22.717 427 262 12 1 413 104 476 4.71e-23 101

Find 64 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAAGTTTGCTAATTAT+TGG 0.118308 3.3:+13757262 None:intergenic
CTGTATCGGCCTGGAAATTT+AGG 0.184893 3.3:-13756553 MS.gene50937:CDS
GACAACCGAAGCAGGGATTT+TGG 0.226524 3.3:-13757305 MS.gene50937:CDS
TCTGAATGGATGTAATTTAA+TGG 0.250687 3.3:-13756915 MS.gene50937:CDS
ATTCAAAGACTTAAAATTGC+TGG 0.308650 3.3:-13756710 MS.gene50937:CDS
AAACTCGAGAGCATGCTTCT+TGG 0.323417 3.3:-13756806 MS.gene50937:CDS
ATGATTGTTTACTTGTTTGC+TGG 0.348919 3.3:-13756595 MS.gene50937:CDS
TCCAAGTGCTTCACTGAAAT+AGG 0.355279 3.3:+13757654 None:intergenic
TTAAGAAAGATCCCCATCTT+AGG 0.362744 3.3:+13756992 None:intergenic
TAATTGCTTGATTTGTGATC+AGG 0.367971 3.3:+13757503 None:intergenic
CCGCCCCATCTGAAAATTAC+AGG 0.369403 3.3:-13757373 MS.gene50937:CDS
TTTAGGTGCTTCACCTAAGA+TGG 0.374066 3.3:-13757005 MS.gene50937:CDS
TTCAGATGGGGCGGACCTCC+TGG 0.389229 3.3:+13757382 None:intergenic
AAGAGGTGATAATGCTGAAT+CGG 0.390322 3.3:+13757030 None:intergenic
GAATCATCACCTAAATTTCC+AGG 0.414889 3.3:+13756544 None:intergenic
TCTTGCCACTGATGATGAAA+TGG 0.424264 3.3:-13757164 MS.gene50937:CDS
CACTCAATAAGAGGGATCAT+TGG 0.426274 3.3:+13757781 None:intergenic
TGAATCGATGGAACTTGAAA+AGG 0.441610 3.3:-13757479 MS.gene50937:CDS
ATTATTGGATTGAACTGTAA+AGG 0.444269 3.3:+13757277 None:intergenic
TCAGTAATCACTAAAAGTTT+CGG 0.445565 3.3:+13756950 None:intergenic
TAAAATTGCTGGATTTATGA+AGG 0.446477 3.3:-13756699 MS.gene50937:CDS
TTTCATTTGACAACCGAAGC+AGG 0.447617 3.3:-13757313 MS.gene50937:CDS
AAAATCCAAAATCCCTGCTT+CGG 0.483217 3.3:+13757300 None:intergenic
TGTGCAAAATGTGTTGCATC+TGG 0.490537 3.3:-13757760 MS.gene50937:CDS
AGAGGTGATAATGCTGAATC+GGG 0.492776 3.3:+13757031 None:intergenic
TTAGGTGCTTCACCTAAGAT+GGG 0.494167 3.3:-13757004 MS.gene50937:CDS
GAAAACTTGCCTGTCAAGAC+AGG 0.495316 3.3:-13757229 MS.gene50937:CDS
GAACAGGAATCAAATCTGAA+TGG 0.501626 3.3:-13756929 MS.gene50937:CDS
ATTTATCCATTGCGCTGGCT+CGG 0.503400 3.3:+13757429 None:intergenic
ATTTCATCACCTCATGGTAA+TGG 0.506040 3.3:-13757694 MS.gene50937:CDS
TGGTAATGGTGTACAAAGAA+TGG 0.507522 3.3:-13757680 MS.gene50937:CDS
TCAAGCAATTATTGAATCGA+TGG 0.507864 3.3:-13757491 MS.gene50937:CDS
TTGAGAGCTTTGTATACGCC+AGG 0.508327 3.3:+13757610 None:intergenic
ACAGCGTCTCCTGTCTTGAC+AGG 0.513933 3.3:+13757220 None:intergenic
AGGTACCTTTGAGTTACAAT+GGG 0.518881 3.3:-13756679 MS.gene50937:CDS
ACCTATTTCAGTGAAGCACT+TGG 0.523468 3.3:-13757655 MS.gene50937:CDS
GATGAAATGGTCTCCTCAGC+AGG 0.533946 3.3:-13757151 MS.gene50937:CDS
ATCAGATTTATCCATTGCGC+TGG 0.534751 3.3:+13757424 None:intergenic
AAGGTACCTTTGAGTTACAA+TGG 0.544427 3.3:-13756680 MS.gene50937:CDS
ATTGCGCTGGCTCGGAACAA+TGG 0.551742 3.3:+13757437 None:intergenic
TTTAATGGAGAGAATCGATC+GGG 0.556728 3.3:-13756900 MS.gene50937:CDS
TCTCAGATTTCATCACCTCA+TGG 0.558265 3.3:-13757700 MS.gene50937:CDS
TTCATTTGACAACCGAAGCA+GGG 0.560755 3.3:-13757312 MS.gene50937:CDS
TATACATAGAGCAGCGCACA+TGG 0.562664 3.3:-13757113 MS.gene50937:CDS
TACCTTTGAGTTACAATGGG+AGG 0.570596 3.3:-13756676 MS.gene50937:CDS
GGCATGAGAAGCTCGAGCAA+TGG 0.571455 3.3:-13756733 MS.gene50937:CDS
ATCGATGGAACTTGAAAAGG+TGG 0.571637 3.3:-13757476 MS.gene50937:CDS
AAGAACATCATTACTTGTGA+GGG 0.575874 3.3:-13756773 MS.gene50937:CDS
ATCCTCCCATTGTAACTCAA+AGG 0.576632 3.3:+13756674 None:intergenic
AAAGAACATCATTACTTGTG+AGG 0.578365 3.3:-13756774 MS.gene50937:CDS
GATAGATGTCGCACCTGCTG+AGG 0.593900 3.3:+13757138 None:intergenic
TTGTGAGGGAGTCGACAGAA+AGG 0.598299 3.3:-13756759 MS.gene50937:CDS
TAGGTGCTTCACCTAAGATG+GGG 0.607732 3.3:-13757003 MS.gene50937:CDS
ATTTAATGGAGAGAATCGAT+CGG 0.609880 3.3:-13756901 MS.gene50937:CDS
AAGATAGTTAAACATTTACC+TGG 0.616797 3.3:-13757628 MS.gene50937:CDS
ATTGTTCCGAGCCAGCGCAA+TGG 0.617587 3.3:-13757435 MS.gene50937:CDS
CAAACTTTAAAGAAACGTCC+AGG 0.618702 3.3:-13757400 MS.gene50937:CDS
GAGCAGCGCACATGGGTCAG+AGG 0.620315 3.3:-13757105 MS.gene50937:CDS
GGAGACCATTTCATCATCAG+TGG 0.644820 3.3:+13757159 None:intergenic
GTCAGAGGACTTTCGCAGAG+TGG 0.652841 3.3:-13757090 MS.gene50937:CDS
AGGGAGTCGACAGAAAGGAA+AGG 0.657047 3.3:-13756754 MS.gene50937:CDS
CTTTGTACACCATTACCATG+AGG 0.671867 3.3:+13757685 None:intergenic
ATACATAGAGCAGCGCACAT+GGG 0.681588 3.3:-13757112 MS.gene50937:CDS
ACTTTAAAGAAACGTCCAGG+AGG 0.710882 3.3:-13757397 MS.gene50937:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGATAGTTAAACATTTACC+TGG - chr3.3:13756700-13756719 MS.gene50937:CDS 25.0%
! AGCATAAAAAATGCTGATAT+TGG - chr3.3:13756592-13756611 MS.gene50937:CDS 25.0%
! AGGTATGAAAACTTCAAAAA+AGG + chr3.3:13756808-13756827 None:intergenic 25.0%
! ATTATTGGATTGAACTGTAA+AGG + chr3.3:13757054-13757073 None:intergenic 25.0%
! ATTCAAAGACTTAAAATTGC+TGG - chr3.3:13757618-13757637 MS.gene50937:CDS 25.0%
! TAAAATTGCTGGATTTATGA+AGG - chr3.3:13757629-13757648 MS.gene50937:CDS 25.0%
! TCAGTAATCACTAAAAGTTT+CGG + chr3.3:13757381-13757400 None:intergenic 25.0%
! TCTGAATGGATGTAATTTAA+TGG - chr3.3:13757413-13757432 MS.gene50937:CDS 25.0%
!! AATTCCTGTAATTTTCAGAT+GGG + chr3.3:13756962-13756981 None:intergenic 25.0%
!!! CATAGAAGTATTTTTGAACA+AGG + chr3.3:13756777-13756796 None:intergenic 25.0%
!!! TCTTCAAGTTTGCTAATTAT+TGG + chr3.3:13757069-13757088 None:intergenic 25.0%
AAAGAACATCATTACTTGTG+AGG - chr3.3:13757554-13757573 MS.gene50937:CDS 30.0%
AAGAACATCATTACTTGTGA+GGG - chr3.3:13757555-13757574 MS.gene50937:CDS 30.0%
ATGATTGTTTACTTGTTTGC+TGG - chr3.3:13757733-13757752 MS.gene50937:CDS 30.0%
ATTTAATGGAGAGAATCGAT+CGG - chr3.3:13757427-13757446 MS.gene50937:CDS 30.0%
TCAAGCAATTATTGAATCGA+TGG - chr3.3:13756837-13756856 MS.gene50937:CDS 30.0%
! ACTTTTAGTGATTACTGAAC+AGG - chr3.3:13757383-13757402 MS.gene50937:CDS 30.0%
! ATTCCTGTAATTTTCAGATG+GGG + chr3.3:13756961-13756980 None:intergenic 30.0%
! ATTTTGCACACTCAATAAGA+GGG + chr3.3:13756558-13756577 None:intergenic 30.0%
! GAATTCCTGTAATTTTCAGA+TGG + chr3.3:13756963-13756982 None:intergenic 30.0%
! TGAAGATGATGATATTTTCG+AGG + chr3.3:13756746-13756765 None:intergenic 30.0%
!! TAATTGCTTGATTTGTGATC+AGG + chr3.3:13756828-13756847 None:intergenic 30.0%
!!! GCATTATCACCTCTTTTTTT+AGG - chr3.3:13757306-13757325 MS.gene50937:CDS 30.0%
AAAATCCAAAATCCCTGCTT+CGG + chr3.3:13757031-13757050 None:intergenic 35.0%
ATTTCATCACCTCATGGTAA+TGG - chr3.3:13756634-13756653 MS.gene50937:CDS 35.0%
GAACAGGAATCAAATCTGAA+TGG - chr3.3:13757399-13757418 MS.gene50937:CDS 35.0%
TGAATCGATGGAACTTGAAA+AGG - chr3.3:13756849-13756868 MS.gene50937:CDS 35.0%
TTAAGAAAGATCCCCATCTT+AGG + chr3.3:13757339-13757358 None:intergenic 35.0%
TTTAATGGAGAGAATCGATC+GGG - chr3.3:13757428-13757447 MS.gene50937:CDS 35.0%
! AAGAGGTGATAATGCTGAAT+CGG + chr3.3:13757301-13757320 None:intergenic 35.0%
! AAGGTACCTTTGAGTTACAA+TGG - chr3.3:13757648-13757667 MS.gene50937:CDS 35.0%
! AGGTACCTTTGAGTTACAAT+GGG - chr3.3:13757649-13757668 MS.gene50937:CDS 35.0%
! CAAACTTTAAAGAAACGTCC+AGG - chr3.3:13756928-13756947 MS.gene50937:CDS 35.0%
! CATTTTGCACACTCAATAAG+AGG + chr3.3:13756559-13756578 None:intergenic 35.0%
!! GATCGGGCATTGTATTTTTA+CGG - chr3.3:13757444-13757463 MS.gene50937:CDS 35.0%
!! TGGTAATGGTGTACAAAGAA+TGG - chr3.3:13756648-13756667 MS.gene50937:CDS 35.0%
!!! CAGACCACTTTTTTCTGTAT+CGG - chr3.3:13757761-13757780 MS.gene50937:CDS 35.0%
ATCAGATTTATCCATTGCGC+TGG + chr3.3:13756907-13756926 None:intergenic 40.0%
ATCCTCCCATTGTAACTCAA+AGG + chr3.3:13757657-13757676 None:intergenic 40.0%
ATCGATGGAACTTGAAAAGG+TGG - chr3.3:13756852-13756871 MS.gene50937:CDS 40.0%
CTTTGTACACCATTACCATG+AGG + chr3.3:13756646-13756665 None:intergenic 40.0%
TCCAAGTGCTTCACTGAAAT+AGG + chr3.3:13756677-13756696 None:intergenic 40.0%
TCTCAGATTTCATCACCTCA+TGG - chr3.3:13756628-13756647 MS.gene50937:CDS 40.0%
TGTGCAAAATGTGTTGCATC+TGG - chr3.3:13756568-13756587 MS.gene50937:CDS 40.0%
TTAGGTGCTTCACCTAAGAT+GGG - chr3.3:13757324-13757343 MS.gene50937:CDS 40.0%
TTCATTTGACAACCGAAGCA+GGG - chr3.3:13757016-13757035 MS.gene50937:CDS 40.0%
TTTAGGTGCTTCACCTAAGA+TGG - chr3.3:13757323-13757342 MS.gene50937:CDS 40.0%
TTTCATTTGACAACCGAAGC+AGG - chr3.3:13757015-13757034 MS.gene50937:CDS 40.0%
! ACCTATTTCAGTGAAGCACT+TGG - chr3.3:13756673-13756692 MS.gene50937:CDS 40.0%
! ACTTTAAAGAAACGTCCAGG+AGG - chr3.3:13756931-13756950 MS.gene50937:CDS 40.0%
! AGAGGTGATAATGCTGAATC+GGG + chr3.3:13757300-13757319 None:intergenic 40.0%
! GGTGAAGCACCTAAAAAAAG+AGG + chr3.3:13757318-13757337 None:intergenic 40.0%
! TACCTTTGAGTTACAATGGG+AGG - chr3.3:13757652-13757671 MS.gene50937:CDS 40.0%
! TCTTGCCACTGATGATGAAA+TGG - chr3.3:13757164-13757183 MS.gene50937:CDS 40.0%
ATACATAGAGCAGCGCACAT+GGG - chr3.3:13757216-13757235 MS.gene50937:CDS 45.0%
CAGGCCGATACAGAAAAAAG+TGG + chr3.3:13757768-13757787 None:intergenic 45.0%
GAAAACTTGCCTGTCAAGAC+AGG - chr3.3:13757099-13757118 MS.gene50937:CDS 45.0%
GGAGACCATTTCATCATCAG+TGG + chr3.3:13757172-13757191 None:intergenic 45.0%
TAGGTGCTTCACCTAAGATG+GGG - chr3.3:13757325-13757344 MS.gene50937:CDS 45.0%
TATACATAGAGCAGCGCACA+TGG - chr3.3:13757215-13757234 MS.gene50937:CDS 45.0%
! AAACTCGAGAGCATGCTTCT+TGG - chr3.3:13757522-13757541 MS.gene50937:CDS 45.0%
! CCTGTAATTTTCAGATGGGG+CGG + chr3.3:13756958-13756977 None:intergenic 45.0%
! CTGTATCGGCCTGGAAATTT+AGG - chr3.3:13757775-13757794 MS.gene50937:CDS 45.0%
! TTGAGAGCTTTGTATACGCC+AGG + chr3.3:13756721-13756740 None:intergenic 45.0%
!! ATTTATCCATTGCGCTGGCT+CGG + chr3.3:13756902-13756921 None:intergenic 45.0%
!!! CACTTTTTTCTGTATCGGCC+TGG - chr3.3:13757766-13757785 MS.gene50937:CDS 45.0%
!!! CGGTTCACTTTTTGACTGCT+TGG - chr3.3:13757464-13757483 MS.gene50937:CDS 45.0%
AGGGAGTCGACAGAAAGGAA+AGG - chr3.3:13757574-13757593 MS.gene50937:CDS 50.0%
CCGCCCCATCTGAAAATTAC+AGG - chr3.3:13756955-13756974 MS.gene50937:CDS 50.0%
GATGAAATGGTCTCCTCAGC+AGG - chr3.3:13757177-13757196 MS.gene50937:CDS 50.0%
TTGTGAGGGAGTCGACAGAA+AGG - chr3.3:13757569-13757588 MS.gene50937:CDS 50.0%
! GACAACCGAAGCAGGGATTT+TGG - chr3.3:13757023-13757042 MS.gene50937:CDS 50.0%
ACAGCGTCTCCTGTCTTGAC+AGG + chr3.3:13757111-13757130 None:intergenic 55.0%
ATTGTTCCGAGCCAGCGCAA+TGG - chr3.3:13756893-13756912 MS.gene50937:CDS 55.0%
GATAGATGTCGCACCTGCTG+AGG + chr3.3:13757193-13757212 None:intergenic 55.0%
GGCATGAGAAGCTCGAGCAA+TGG - chr3.3:13757595-13757614 MS.gene50937:CDS 55.0%
GTCAGAGGACTTTCGCAGAG+TGG - chr3.3:13757238-13757257 MS.gene50937:CDS 55.0%
!! ATTGCGCTGGCTCGGAACAA+TGG + chr3.3:13756894-13756913 None:intergenic 55.0%
GAGCAGCGCACATGGGTCAG+AGG - chr3.3:13757223-13757242 MS.gene50937:CDS 65.0%
TTCAGATGGGGCGGACCTCC+TGG + chr3.3:13756949-13756968 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 13756550 13757800 13756550 ID=MS.gene50937
chr3.3 mRNA 13756550 13757800 13756550 ID=MS.gene50937.t1;Parent=MS.gene50937
chr3.3 exon 13756550 13757800 13756550 ID=MS.gene50937.t1.exon1;Parent=MS.gene50937.t1
chr3.3 CDS 13756550 13757800 13756550 ID=cds.MS.gene50937.t1;Parent=MS.gene50937.t1
Gene Sequence

>MS.gene50937

ATGATCCCTCTTATTGAGTGTGCAAAATGTGTTGCATCTGGAAGCATAAAAAATGCTGATATTGGACTTGAGTATATTTCTCAGATTTCATCACCTCATGGTAATGGTGTACAAAGAATGGTCACCTATTTCAGTGAAGCACTTGGATACAAGATAGTTAAACATTTACCTGGCGTATACAAAGCTCTCAATTCCTCGAAAATATCATCATCTTCAGATGATATCCTTGTTCAAAAATACTTCTATGATCTGTGTCCTTTTTTGAAGTTTTCATACCTGATCACAAATCAAGCAATTATTGAATCGATGGAACTTGAAAAGGTGGTTCATATTATCGATCTCCATTGTTCCGAGCCAGCGCAATGGATAAATCTGATACAAACTTTAAAGAAACGTCCAGGAGGTCCGCCCCATCTGAAAATTACAGGAATTCATGAAAAGAAAGAAGTATTAGAGCAAATGAGCTTTCATTTGACAACCGAAGCAGGGATTTTGGATTTTCCTTTACAGTTCAATCCAATAATTAGCAAACTTGAAGATGTCGATTTCGAAAACTTGCCTGTCAAGACAGGAGACGCTGTCGCAATTTCTTCTGTTCTTCAGCTGCATTCTCTTCTTGCCACTGATGATGAAATGGTCTCCTCAGCAGGTGCGACATCTATCAATATACATAGAGCAGCGCACATGGGTCAGAGGACTTTCGCAGAGTGGCTAGAGAGAGACATGATCAATGCATATATCTTGAGTCCCGATTCAGCATTATCACCTCTTTTTTTAGGTGCTTCACCTAAGATGGGGATCTTTCTTAATGCTATGCGAAAATTACAACCGAAACTTTTAGTGATTACTGAACAGGAATCAAATCTGAATGGATGTAATTTAATGGAGAGAATCGATCGGGCATTGTATTTTTACGGTTCACTTTTTGACTGCTTGGAATCTACTGTTACGAGAACATCAGTCGAGAGACAAAAACTCGAGAGCATGCTTCTTGGAGAGCAAATAAAGAACATCATTACTTGTGAGGGAGTCGACAGAAAGGAAAGGCATGAGAAGCTCGAGCAATGGATTCAAAGACTTAAAATTGCTGGATTTATGAAGGTACCTTTGAGTTACAATGGGAGGATAGAAGCGACAAATCTATTGCAGCGATATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTACTTGTTTGCTGGAGTGACAGACCACTTTTTTCTGTATCGGCCTGGAAATTTAGGTGA
Protein sequence

>MS.gene50937.t1

MIPLIECAKCVASGSIKNADIGLEYISQISSPHGNGVQRMVTYFSEALGYKIVKHLPGVYKALNSSKISSSSDDILVQKYFYDLCPFLKFSYLITNQAIIESMELEKVVHIIDLHCSEPAQWINLIQTLKKRPGGPPHLKITGIHEKKEVLEQMSFHLTTEAGILDFPLQFNPIISKLEDVDFENLPVKTGDAVAISSVLQLHSLLATDDEMVSSAGATSINIHRAAHMGQRTFAEWLERDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLQPKLLVITEQESNLNGCNLMERIDRALYFYGSLFDCLESTVTRTSVERQKLESMLLGEQIKNIITCEGVDRKERHEKLEQWIQRLKIAGFMKVPLSYNGRIEATNLLQRYSHKYKFKEENDCLLVCWSDRPLFSVSAWKFR