Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51042.t1 | XP_003608986.1 | 91.9 | 283 | 18 | 3 | 1 | 279 | 56 | 337 | 8.10E-113 | 416.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51042.t1 | Q940J1 | 67.8 | 90 | 26 | 1 | 15 | 101 | 31 | 120 | 2.7e-24 | 114.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51042.t1 | B7FK22 | 91.9 | 283 | 18 | 3 | 1 | 279 | 56 | 337 | 5.8e-113 | 416.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene51042.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51042.t1 | MTR_4g107650 | 93.640 | 283 | 13 | 3 | 1 | 279 | 56 | 337 | 0.0 | 513 |
MS.gene51042.t1 | MTR_5g038280 | 48.443 | 289 | 128 | 9 | 1 | 277 | 45 | 324 | 7.07e-72 | 224 |
MS.gene51042.t1 | MTR_8g469430 | 42.972 | 249 | 92 | 6 | 35 | 279 | 84 | 286 | 9.84e-51 | 168 |
MS.gene51042.t1 | MTR_6g007647 | 48.108 | 185 | 71 | 3 | 39 | 220 | 32 | 194 | 2.41e-45 | 153 |
MS.gene51042.t1 | MTR_6g007647 | 48.108 | 185 | 71 | 3 | 39 | 220 | 66 | 228 | 6.22e-45 | 153 |
MS.gene51042.t1 | MTR_5g039000 | 53.846 | 143 | 56 | 3 | 11 | 144 | 45 | 186 | 1.52e-38 | 137 |
MS.gene51042.t1 | MTR_8g468210 | 54.815 | 135 | 53 | 3 | 18 | 144 | 52 | 186 | 2.54e-38 | 136 |
MS.gene51042.t1 | MTR_3g086790 | 57.895 | 114 | 48 | 0 | 28 | 141 | 48 | 161 | 2.05e-36 | 132 |
MS.gene51042.t1 | MTR_3g080100 | 62.857 | 105 | 39 | 0 | 39 | 143 | 19 | 123 | 4.13e-36 | 128 |
MS.gene51042.t1 | MTR_3g080100 | 62.857 | 105 | 39 | 0 | 39 | 143 | 58 | 162 | 9.29e-36 | 129 |
MS.gene51042.t1 | MTR_6g011610 | 52.846 | 123 | 51 | 1 | 34 | 149 | 90 | 212 | 1.33e-35 | 129 |
MS.gene51042.t1 | MTR_6g011610 | 52.846 | 123 | 51 | 1 | 34 | 149 | 71 | 193 | 1.33e-35 | 128 |
MS.gene51042.t1 | MTR_8g089895 | 60.784 | 102 | 40 | 0 | 39 | 140 | 53 | 154 | 3.00e-35 | 129 |
MS.gene51042.t1 | MTR_7g010020 | 43.158 | 190 | 94 | 6 | 26 | 202 | 64 | 252 | 5.19e-32 | 119 |
MS.gene51042.t1 | MTR_7g103340 | 48.148 | 135 | 50 | 4 | 39 | 173 | 62 | 176 | 7.99e-30 | 112 |
MS.gene51042.t1 | MTR_1g061660 | 53.982 | 113 | 42 | 3 | 29 | 141 | 49 | 151 | 5.15e-29 | 110 |
MS.gene51042.t1 | MTR_3g092150 | 55.789 | 95 | 42 | 0 | 42 | 136 | 40 | 134 | 1.45e-28 | 109 |
MS.gene51042.t1 | MTR_8g026960 | 47.778 | 90 | 47 | 0 | 47 | 136 | 41 | 130 | 1.06e-24 | 99.4 |
MS.gene51042.t1 | MTR_5g019680 | 45.872 | 109 | 52 | 1 | 40 | 148 | 53 | 154 | 9.06e-22 | 90.9 |
MS.gene51042.t1 | MTR_5g019650 | 49.091 | 110 | 54 | 2 | 40 | 148 | 53 | 161 | 2.02e-21 | 90.1 |
MS.gene51042.t1 | MTR_4g100550 | 50.926 | 108 | 44 | 2 | 25 | 132 | 107 | 205 | 8.26e-21 | 89.7 |
MS.gene51042.t1 | MTR_5g013010 | 44.275 | 131 | 54 | 3 | 2 | 132 | 110 | 221 | 1.05e-18 | 84.3 |
MS.gene51042.t1 | MTR_1g054285 | 46.341 | 123 | 55 | 3 | 14 | 132 | 124 | 239 | 1.14e-18 | 84.3 |
MS.gene51042.t1 | MTR_2g061030 | 50.000 | 90 | 45 | 0 | 38 | 127 | 198 | 287 | 6.00e-18 | 82.8 |
MS.gene51042.t1 | MTR_7g093430 | 47.115 | 104 | 53 | 1 | 24 | 127 | 146 | 247 | 6.07e-18 | 82.0 |
MS.gene51042.t1 | MTR_8g006705 | 51.613 | 93 | 38 | 2 | 40 | 132 | 146 | 231 | 2.33e-17 | 80.5 |
MS.gene51042.t1 | MTR_4g097600 | 46.154 | 104 | 49 | 1 | 29 | 132 | 116 | 212 | 3.18e-17 | 79.7 |
MS.gene51042.t1 | MTR_1g017090 | 42.727 | 110 | 52 | 1 | 18 | 127 | 119 | 217 | 2.67e-16 | 77.4 |
MS.gene51042.t1 | MTR_5g014890 | 44.792 | 96 | 53 | 0 | 32 | 127 | 115 | 210 | 9.09e-16 | 75.9 |
MS.gene51042.t1 | MTR_3g103590 | 48.611 | 72 | 37 | 0 | 40 | 111 | 145 | 216 | 2.38e-14 | 72.0 |
MS.gene51042.t1 | MTR_4g084750 | 45.161 | 93 | 44 | 1 | 40 | 132 | 65 | 150 | 3.50e-14 | 70.1 |
MS.gene51042.t1 | MTR_4g126900 | 44.444 | 90 | 43 | 1 | 43 | 132 | 91 | 173 | 5.62e-14 | 69.7 |
MS.gene51042.t1 | MTR_5g013010 | 45.556 | 90 | 37 | 2 | 2 | 91 | 110 | 187 | 9.53e-14 | 68.9 |
MS.gene51042.t1 | MTR_2g038625 | 40.909 | 88 | 52 | 0 | 40 | 127 | 82 | 169 | 1.39e-11 | 63.2 |
MS.gene51042.t1 | MTR_2g038580 | 40.909 | 88 | 52 | 0 | 40 | 127 | 82 | 169 | 1.39e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51042.t1 | AT3G01470 | 50.282 | 177 | 63 | 4 | 39 | 212 | 67 | 221 | 2.34e-44 | 151 |
MS.gene51042.t1 | AT4G40060 | 42.308 | 234 | 115 | 7 | 15 | 245 | 31 | 247 | 1.39e-40 | 142 |
MS.gene51042.t1 | AT3G01220 | 58.621 | 116 | 44 | 1 | 38 | 153 | 85 | 196 | 7.58e-37 | 132 |
MS.gene51042.t1 | AT2G22430 | 63.636 | 99 | 36 | 0 | 38 | 136 | 60 | 158 | 1.07e-36 | 132 |
MS.gene51042.t1 | AT5G15150 | 65.263 | 95 | 33 | 0 | 38 | 132 | 113 | 207 | 2.02e-36 | 132 |
MS.gene51042.t1 | AT1G69780 | 54.918 | 122 | 50 | 1 | 28 | 144 | 73 | 194 | 5.44e-36 | 130 |
MS.gene51042.t1 | AT5G65310 | 62.626 | 99 | 37 | 0 | 38 | 136 | 52 | 150 | 7.54e-36 | 130 |
MS.gene51042.t1 | AT5G65310 | 62.626 | 99 | 37 | 0 | 38 | 136 | 70 | 168 | 8.90e-36 | 130 |
MS.gene51042.t1 | AT1G26960 | 48.872 | 133 | 67 | 1 | 4 | 135 | 34 | 166 | 1.01e-31 | 118 |
MS.gene51042.t1 | AT1G27045 | 47.445 | 137 | 65 | 1 | 16 | 145 | 37 | 173 | 3.74e-31 | 116 |
MS.gene51042.t1 | AT1G27045 | 53.846 | 117 | 53 | 1 | 28 | 143 | 12 | 128 | 1.81e-30 | 113 |
MS.gene51042.t1 | AT1G27045 | 53.846 | 117 | 53 | 1 | 28 | 143 | 12 | 128 | 1.81e-30 | 113 |
MS.gene51042.t1 | AT1G27045 | 53.846 | 117 | 53 | 1 | 28 | 143 | 4 | 120 | 2.12e-30 | 112 |
MS.gene51042.t1 | AT1G27045 | 49.194 | 124 | 56 | 1 | 16 | 132 | 37 | 160 | 2.49e-29 | 112 |
MS.gene51042.t1 | AT2G46680 | 46.903 | 113 | 60 | 0 | 31 | 143 | 23 | 135 | 3.13e-28 | 109 |
MS.gene51042.t1 | AT2G18550 | 48.120 | 133 | 54 | 3 | 10 | 142 | 39 | 156 | 4.51e-28 | 107 |
MS.gene51042.t1 | AT3G61890 | 51.485 | 101 | 48 | 1 | 43 | 143 | 33 | 132 | 1.86e-27 | 106 |
MS.gene51042.t1 | AT2G46680 | 51.020 | 98 | 48 | 0 | 31 | 128 | 23 | 120 | 9.69e-27 | 105 |
MS.gene51042.t1 | AT2G36610 | 40.909 | 154 | 65 | 5 | 12 | 148 | 34 | 178 | 1.18e-25 | 100 |
MS.gene51042.t1 | AT4G36740 | 50.485 | 103 | 44 | 1 | 40 | 142 | 56 | 151 | 1.20e-25 | 101 |
MS.gene51042.t1 | AT4G36740 | 50.485 | 103 | 44 | 1 | 40 | 142 | 55 | 150 | 1.27e-25 | 101 |
MS.gene51042.t1 | AT5G03790 | 45.528 | 123 | 54 | 3 | 40 | 156 | 77 | 192 | 1.74e-25 | 101 |
MS.gene51042.t1 | AT5G03790 | 53.763 | 93 | 36 | 1 | 40 | 132 | 77 | 162 | 2.65e-25 | 99.8 |
MS.gene51042.t1 | AT5G66700 | 48.454 | 97 | 43 | 1 | 40 | 136 | 71 | 160 | 8.88e-23 | 94.0 |
MS.gene51042.t1 | AT3G60390 | 46.281 | 121 | 54 | 3 | 12 | 132 | 138 | 247 | 1.05e-18 | 84.7 |
MS.gene51042.t1 | AT5G06710 | 48.624 | 109 | 40 | 2 | 24 | 132 | 183 | 275 | 1.19e-18 | 84.7 |
MS.gene51042.t1 | AT5G53980 | 46.667 | 90 | 48 | 0 | 40 | 129 | 11 | 100 | 4.18e-18 | 79.7 |
MS.gene51042.t1 | AT5G47370 | 48.077 | 104 | 47 | 1 | 29 | 132 | 119 | 215 | 8.60e-18 | 81.6 |
MS.gene51042.t1 | AT2G44910 | 51.613 | 93 | 38 | 1 | 40 | 132 | 163 | 248 | 1.41e-17 | 81.6 |
MS.gene51042.t1 | AT4G16780 | 45.133 | 113 | 47 | 2 | 20 | 132 | 117 | 214 | 1.58e-17 | 80.9 |
MS.gene51042.t1 | AT4G17460 | 47.619 | 105 | 47 | 2 | 29 | 132 | 123 | 220 | 5.68e-17 | 79.3 |
MS.gene51042.t1 | AT2G22800 | 43.750 | 96 | 54 | 0 | 32 | 127 | 105 | 200 | 1.61e-15 | 75.1 |
MS.gene51042.t1 | AT2G01430 | 42.478 | 113 | 51 | 3 | 25 | 132 | 121 | 224 | 1.19e-14 | 72.8 |
MS.gene51042.t1 | AT4G37790 | 43.810 | 105 | 52 | 2 | 28 | 132 | 114 | 211 | 2.09e-14 | 72.0 |
MS.gene51042.t1 | AT5G06710 | 41.837 | 98 | 46 | 2 | 24 | 119 | 183 | 271 | 8.81e-14 | 70.1 |
MS.gene51042.t1 | AT2G01430 | 46.575 | 73 | 32 | 2 | 25 | 92 | 121 | 191 | 8.77e-12 | 63.5 |
MS.gene51042.t1 | AT1G70920 | 43.011 | 93 | 46 | 1 | 40 | 132 | 69 | 154 | 2.17e-11 | 62.4 |
MS.gene51042.t1 | AT1G70920 | 43.011 | 93 | 46 | 1 | 40 | 132 | 39 | 124 | 2.41e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCTCAACAATTGACAATT+TGG | 0.241624 | 8.2:-17998899 | None:intergenic |
TGAGAGACGCCGTTTCTTCT+CGG | 0.306253 | 8.2:-17998117 | None:intergenic |
ATCATCAAGCTCTTTGGCCT+TGG | 0.324405 | 8.2:+17999181 | MS.gene51042:CDS |
AGCCACGGCAAGTTGCTATT+TGG | 0.343826 | 8.2:+17998234 | MS.gene51042:CDS |
TTCAGCAAGGAGTGACATAT+TGG | 0.347228 | 8.2:+17998954 | MS.gene51042:CDS |
TCAACGAAAGGTTTATTCAT+TGG | 0.362631 | 8.2:-17998853 | None:intergenic |
TGTCTTCTTCATCTTGTGAT+AGG | 0.364063 | 8.2:-17999059 | None:intergenic |
CATGATAATTCATCAAGTTA+TGG | 0.374938 | 8.2:+17999141 | MS.gene51042:CDS |
AAGATCATCATCAAGCTCTT+TGG | 0.376736 | 8.2:+17999175 | MS.gene51042:CDS |
ACCAAGGTCTTTAGCTAGCT+TGG | 0.382164 | 8.2:-17998207 | None:intergenic |
GGATTTGATCTTGACGAAAA+CGG | 0.405214 | 8.2:+17998062 | MS.gene51042:CDS |
ATAATCCTTCTCAAGCTGTT+TGG | 0.413395 | 8.2:-17998285 | None:intergenic |
TGAAACAAAGGAATTCTTGC+AGG | 0.414573 | 8.2:+17998825 | MS.gene51042:CDS |
AAGGAAGGAAAAGGTGCAAC+AGG | 0.438515 | 8.2:+17998027 | MS.gene51042:CDS |
ACCTTCTCAAAGAGAAAGAT+AGG | 0.463134 | 8.2:+17998354 | MS.gene51042:CDS |
CGAAAACGGCGAGGATGAGA+TGG | 0.475286 | 8.2:+17998076 | MS.gene51042:CDS |
AGGTGCAACAGGTCTTTCTT+CGG | 0.489691 | 8.2:+17998038 | MS.gene51042:CDS |
GGTAGCAAGCCTAACTGAAA+AGG | 0.493946 | 8.2:+17998756 | MS.gene51042:intron |
ACCTATCTTTCTCTTTGAGA+AGG | 0.495244 | 8.2:-17998355 | None:intergenic |
AAGACCTTGGTTTGCAGCCA+CGG | 0.500948 | 8.2:+17998219 | MS.gene51042:CDS |
ATCCAAATTGTCAATTGTTG+AGG | 0.508800 | 8.2:+17998897 | MS.gene51042:CDS |
ACGAAAGGTTTATTCATTGG+TGG | 0.509961 | 8.2:-17998850 | None:intergenic |
TTCATCAATCCGAGAAGAAA+CGG | 0.510950 | 8.2:+17998108 | MS.gene51042:CDS |
TTTCGTTGATTCAGTTTCTG+AGG | 0.525520 | 8.2:+17998867 | MS.gene51042:CDS |
TTCGTTGATTCAGTTTCTGA+GGG | 0.530384 | 8.2:+17998868 | MS.gene51042:CDS |
TCTTGAGAAAAGCTTTGAAG+AGG | 0.530902 | 8.2:+17998157 | MS.gene51042:CDS |
GAAAGATAGGTTACAATCTG+AGG | 0.533848 | 8.2:+17998367 | MS.gene51042:CDS |
AAGATGTTCAAGGAAGGAAA+AGG | 0.536023 | 8.2:+17998018 | MS.gene51042:CDS |
TTCAAAACCGTCGTGCAAGA+TGG | 0.537462 | 8.2:+17998258 | MS.gene51042:CDS |
ATTTGAACATGAATATCAAT+CGG | 0.545738 | 8.2:+17999035 | MS.gene51042:CDS |
ACCAAGCTAGCTAAAGACCT+TGG | 0.547629 | 8.2:+17998206 | MS.gene51042:CDS |
GATTCAGTTTCTGAGGGTGA+AGG | 0.556405 | 8.2:+17998874 | MS.gene51042:CDS |
ATATTCATGTTCAAATACAT+AGG | 0.565080 | 8.2:-17999028 | None:intergenic |
TGCAACAGGTCTTTCTTCGG+AGG | 0.566461 | 8.2:+17998041 | MS.gene51042:CDS |
ACTGATGGAGTGTTAGAGAC+AGG | 0.581498 | 8.2:+17998997 | MS.gene51042:CDS |
GACAGCCCACGTTACACTGA+TGG | 0.581501 | 8.2:+17998982 | MS.gene51042:CDS |
CTTGCCGTGGCTGCAAACCA+AGG | 0.588928 | 8.2:-17998223 | None:intergenic |
GAAGAAACGGCGTCTCTCAG+TGG | 0.590083 | 8.2:+17998121 | MS.gene51042:CDS |
TTGATGAATTATCATGTGGC+GGG | 0.592126 | 8.2:-17999134 | None:intergenic |
CTTGATGAATTATCATGTGG+CGG | 0.594488 | 8.2:-17999135 | None:intergenic |
ATCAAGTTATGGATTTCAAG+AGG | 0.600284 | 8.2:+17999152 | MS.gene51042:CDS |
TGAATTATCATGTGGCGGGT+CGG | 0.601580 | 8.2:-17999130 | None:intergenic |
ACAAGGTGAAAGTGAAACAA+AGG | 0.601903 | 8.2:+17998813 | MS.gene51042:CDS |
TGGTCTTCCATCTTGCACGA+CGG | 0.616539 | 8.2:-17998265 | None:intergenic |
GAAGACCAAACAGCTTGAGA+AGG | 0.620125 | 8.2:+17998280 | MS.gene51042:CDS |
CAAGAGGGAAAATTCAAACA+AGG | 0.630062 | 8.2:+17998796 | MS.gene51042:CDS |
AACACTCCATCAGTGTAACG+TGG | 0.635850 | 8.2:-17998988 | None:intergenic |
TAACTTGATGAATTATCATG+TGG | 0.637883 | 8.2:-17999138 | None:intergenic |
ATGAAGATATTAGTTCAGCA+AGG | 0.640831 | 8.2:+17998941 | MS.gene51042:CDS |
AACCAAATAGCAACTTGCCG+TGG | 0.641928 | 8.2:-17998236 | None:intergenic |
TCAGAAACTGAATCAACGAA+AGG | 0.656347 | 8.2:-17998865 | None:intergenic |
CATATCATTTAATAAGACCA+AGG | 0.657999 | 8.2:-17999198 | None:intergenic |
ACTTGCAAGAGAGAAACAAG+AGG | 0.662555 | 8.2:+17998780 | MS.gene51042:CDS |
TGATCTTGACGAAAACGGCG+AGG | 0.684795 | 8.2:+17998067 | MS.gene51042:CDS |
CTTGCAAGAGAGAAACAAGA+GGG | 0.688671 | 8.2:+17998781 | MS.gene51042:CDS |
ACACTCCATCAGTGTAACGT+GGG | 0.696078 | 8.2:-17998987 | None:intergenic |
ACAACAAGCTTGAACCAGAG+AGG | 0.699556 | 8.2:+17998180 | MS.gene51042:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATAAAATTCATGAAATTG+TGG | + | chr8.2:17998667-17998686 | MS.gene51042:intron | 20.0% |
!! | ATATTCATGTTCAAATACAT+AGG | - | chr8.2:17999031-17999050 | None:intergenic | 20.0% |
!! | ATTTGAACATGAATATCAAT+CGG | + | chr8.2:17999035-17999054 | MS.gene51042:CDS | 20.0% |
!!! | CTTAATTGTAAATTTGAGAT+CGG | + | chr8.2:17998472-17998491 | MS.gene51042:intron | 20.0% |
!!! | TCAAGTTTTGTAAAAATGTA+AGG | - | chr8.2:17999096-17999115 | None:intergenic | 20.0% |
! | CATGATAATTCATCAAGTTA+TGG | + | chr8.2:17999141-17999160 | MS.gene51042:CDS | 25.0% |
! | TAACTTGATGAATTATCATG+TGG | - | chr8.2:17999141-17999160 | None:intergenic | 25.0% |
!!! | AGTTTTGTAAAAATGTAAGG+AGG | - | chr8.2:17999093-17999112 | None:intergenic | 25.0% |
ATCAAGTTATGGATTTCAAG+AGG | + | chr8.2:17999152-17999171 | MS.gene51042:CDS | 30.0% | |
ATCCAAATTGTCAATTGTTG+AGG | + | chr8.2:17998897-17998916 | MS.gene51042:CDS | 30.0% | |
ATGAAGATATTAGTTCAGCA+AGG | + | chr8.2:17998941-17998960 | MS.gene51042:CDS | 30.0% | |
TCAACGAAAGGTTTATTCAT+TGG | - | chr8.2:17998856-17998875 | None:intergenic | 30.0% | |
TGTGGTTCACATAAAACTAT+TGG | + | chr8.2:17998685-17998704 | MS.gene51042:intron | 30.0% | |
AAGATCATCATCAAGCTCTT+TGG | + | chr8.2:17999175-17999194 | MS.gene51042:CDS | 35.0% | |
AAGATGTTCAAGGAAGGAAA+AGG | + | chr8.2:17998018-17998037 | MS.gene51042:CDS | 35.0% | |
ACAAGGTGAAAGTGAAACAA+AGG | + | chr8.2:17998813-17998832 | MS.gene51042:CDS | 35.0% | |
ACCTTCTCAAAGAGAAAGAT+AGG | + | chr8.2:17998354-17998373 | MS.gene51042:CDS | 35.0% | |
ACGAAAGGTTTATTCATTGG+TGG | - | chr8.2:17998853-17998872 | None:intergenic | 35.0% | |
AGCCTCAACAATTGACAATT+TGG | - | chr8.2:17998902-17998921 | None:intergenic | 35.0% | |
ATAATCCTTCTCAAGCTGTT+TGG | - | chr8.2:17998288-17998307 | None:intergenic | 35.0% | |
CAAGAGGGAAAATTCAAACA+AGG | + | chr8.2:17998796-17998815 | MS.gene51042:CDS | 35.0% | |
CTTGATGAATTATCATGTGG+CGG | - | chr8.2:17999138-17999157 | None:intergenic | 35.0% | |
GAAAGATAGGTTACAATCTG+AGG | + | chr8.2:17998367-17998386 | MS.gene51042:CDS | 35.0% | |
GGATTTGATCTTGACGAAAA+CGG | + | chr8.2:17998062-17998081 | MS.gene51042:CDS | 35.0% | |
TCAGAAACTGAATCAACGAA+AGG | - | chr8.2:17998868-17998887 | None:intergenic | 35.0% | |
TCTCTGTGATGTTTCAATAC+AGG | + | chr8.2:17998735-17998754 | MS.gene51042:intron | 35.0% | |
TGAAACAAAGGAATTCTTGC+AGG | + | chr8.2:17998825-17998844 | MS.gene51042:CDS | 35.0% | |
TGTCTTCTTCATCTTGTGAT+AGG | - | chr8.2:17999062-17999081 | None:intergenic | 35.0% | |
TTCATCAATCCGAGAAGAAA+CGG | + | chr8.2:17998108-17998127 | MS.gene51042:CDS | 35.0% | |
TTGATGAATTATCATGTGGC+GGG | - | chr8.2:17999137-17999156 | None:intergenic | 35.0% | |
! | ACCTATCTTTCTCTTTGAGA+AGG | - | chr8.2:17998358-17998377 | None:intergenic | 35.0% |
! | TTGCAAGTACCTTTTCAGTT+AGG | - | chr8.2:17998768-17998787 | None:intergenic | 35.0% |
!! | TCTTGAGAAAAGCTTTGAAG+AGG | + | chr8.2:17998157-17998176 | MS.gene51042:CDS | 35.0% |
!! | TTCGTTGATTCAGTTTCTGA+GGG | + | chr8.2:17998868-17998887 | MS.gene51042:CDS | 35.0% |
!! | TTTCGTTGATTCAGTTTCTG+AGG | + | chr8.2:17998867-17998886 | MS.gene51042:CDS | 35.0% |
!!! | GTGAGTTTTGAAGATGTTCA+AGG | + | chr8.2:17998008-17998027 | MS.gene51042:CDS | 35.0% |
!!! | GTTTTGAAGATGTTCAAGGA+AGG | + | chr8.2:17998012-17998031 | MS.gene51042:CDS | 35.0% |
ACTTGCAAGAGAGAAACAAG+AGG | + | chr8.2:17998780-17998799 | MS.gene51042:CDS | 40.0% | |
CTTGCAAGAGAGAAACAAGA+GGG | + | chr8.2:17998781-17998800 | MS.gene51042:CDS | 40.0% | |
TTCAGCAAGGAGTGACATAT+TGG | + | chr8.2:17998954-17998973 | MS.gene51042:CDS | 40.0% | |
AACACTCCATCAGTGTAACG+TGG | - | chr8.2:17998991-17999010 | None:intergenic | 45.0% | |
AACCAAATAGCAACTTGCCG+TGG | - | chr8.2:17998239-17998258 | None:intergenic | 45.0% | |
ACAACAAGCTTGAACCAGAG+AGG | + | chr8.2:17998180-17998199 | MS.gene51042:CDS | 45.0% | |
ACACTCCATCAGTGTAACGT+GGG | - | chr8.2:17998990-17999009 | None:intergenic | 45.0% | |
ACCAAGCTAGCTAAAGACCT+TGG | + | chr8.2:17998206-17998225 | MS.gene51042:CDS | 45.0% | |
ACCAAGGTCTTTAGCTAGCT+TGG | - | chr8.2:17998210-17998229 | None:intergenic | 45.0% | |
AGGTGCAACAGGTCTTTCTT+CGG | + | chr8.2:17998038-17998057 | MS.gene51042:CDS | 45.0% | |
ATCATCAAGCTCTTTGGCCT+TGG | + | chr8.2:17999181-17999200 | MS.gene51042:CDS | 45.0% | |
GAAGACCAAACAGCTTGAGA+AGG | + | chr8.2:17998280-17998299 | MS.gene51042:CDS | 45.0% | |
GGTAGCAAGCCTAACTGAAA+AGG | + | chr8.2:17998756-17998775 | MS.gene51042:intron | 45.0% | |
TTCAAAACCGTCGTGCAAGA+TGG | + | chr8.2:17998258-17998277 | MS.gene51042:CDS | 45.0% | |
! | AAGGAAGGAAAAGGTGCAAC+AGG | + | chr8.2:17998027-17998046 | MS.gene51042:CDS | 45.0% |
! | ACTGATGGAGTGTTAGAGAC+AGG | + | chr8.2:17998997-17999016 | MS.gene51042:CDS | 45.0% |
! | GATTCAGTTTCTGAGGGTGA+AGG | + | chr8.2:17998874-17998893 | MS.gene51042:CDS | 45.0% |
!! | TGAATTATCATGTGGCGGGT+CGG | - | chr8.2:17999133-17999152 | None:intergenic | 45.0% |
TGAGAGACGCCGTTTCTTCT+CGG | - | chr8.2:17998120-17998139 | None:intergenic | 50.0% | |
TGATCTTGACGAAAACGGCG+AGG | + | chr8.2:17998067-17998086 | MS.gene51042:CDS | 50.0% | |
TGCAACAGGTCTTTCTTCGG+AGG | + | chr8.2:17998041-17998060 | MS.gene51042:CDS | 50.0% | |
TGGTCTTCCATCTTGCACGA+CGG | - | chr8.2:17998268-17998287 | None:intergenic | 50.0% | |
! | AGCCACGGCAAGTTGCTATT+TGG | + | chr8.2:17998234-17998253 | MS.gene51042:CDS | 50.0% |
!! | AAGACCTTGGTTTGCAGCCA+CGG | + | chr8.2:17998219-17998238 | MS.gene51042:CDS | 50.0% |
!! | GCTAGCTTGGTTTTCCTCTC+TGG | - | chr8.2:17998197-17998216 | None:intergenic | 50.0% |
CGAAAACGGCGAGGATGAGA+TGG | + | chr8.2:17998076-17998095 | MS.gene51042:CDS | 55.0% | |
GAAGAAACGGCGTCTCTCAG+TGG | + | chr8.2:17998121-17998140 | MS.gene51042:CDS | 55.0% | |
GACAGCCCACGTTACACTGA+TGG | + | chr8.2:17998982-17999001 | MS.gene51042:CDS | 55.0% | |
CTTGCCGTGGCTGCAAACCA+AGG | - | chr8.2:17998226-17998245 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 17998005 | 17999212 | 17998005 | ID=MS.gene51042 |
chr8.2 | mRNA | 17998005 | 17999212 | 17998005 | ID=MS.gene51042.t1;Parent=MS.gene51042 |
chr8.2 | exon | 17998005 | 17998388 | 17998005 | ID=MS.gene51042.t1.exon1;Parent=MS.gene51042.t1 |
chr8.2 | CDS | 17998005 | 17998388 | 17998005 | ID=cds.MS.gene51042.t1;Parent=MS.gene51042.t1 |
chr8.2 | exon | 17998757 | 17999212 | 17998757 | ID=MS.gene51042.t1.exon2;Parent=MS.gene51042.t1 |
chr8.2 | CDS | 17998757 | 17999212 | 17998757 | ID=cds.MS.gene51042.t1;Parent=MS.gene51042.t1 |
Gene Sequence |
Protein sequence |