Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51078.t1 | XP_003616690.1 | 98.2 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 1.70E-86 | 328.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51078.t1 | Q8LBW3 | 88.7 | 115 | 13 | 0 | 3 | 117 | 5 | 119 | 9.6e-54 | 211.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51078.t1 | G7K288 | 98.2 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 1.2e-86 | 328.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene51078.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51078.t1 | MTR_5g083230 | 98.204 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 4.81e-122 | 340 |
MS.gene51078.t1 | MTR_3g071590 | 73.171 | 164 | 35 | 4 | 1 | 160 | 1 | 159 | 1.95e-80 | 235 |
MS.gene51078.t1 | MTR_3g031660 | 65.909 | 176 | 44 | 5 | 1 | 160 | 1 | 176 | 9.54e-73 | 216 |
MS.gene51078.t1 | MTR_4g083680 | 56.098 | 164 | 61 | 1 | 2 | 165 | 11 | 163 | 1.57e-58 | 180 |
MS.gene51078.t1 | MTR_2g068760 | 76.364 | 110 | 26 | 0 | 2 | 111 | 9 | 118 | 1.84e-58 | 179 |
MS.gene51078.t1 | MTR_2g093310 | 62.832 | 113 | 42 | 0 | 5 | 117 | 32 | 144 | 9.00e-51 | 161 |
MS.gene51078.t1 | MTR_7g033800 | 53.020 | 149 | 66 | 1 | 4 | 148 | 9 | 157 | 1.96e-50 | 160 |
MS.gene51078.t1 | MTR_4g105170 | 52.532 | 158 | 58 | 1 | 4 | 144 | 9 | 166 | 2.16e-50 | 160 |
MS.gene51078.t1 | MTR_3g077240 | 71.154 | 104 | 30 | 0 | 4 | 107 | 8 | 111 | 4.15e-50 | 159 |
MS.gene51078.t1 | MTR_4g060950 | 64.035 | 114 | 40 | 1 | 5 | 117 | 23 | 136 | 1.72e-49 | 158 |
MS.gene51078.t1 | MTR_5g083960 | 60.504 | 119 | 47 | 0 | 1 | 119 | 34 | 152 | 1.03e-48 | 156 |
MS.gene51078.t1 | MTR_6g005070 | 57.377 | 122 | 52 | 0 | 4 | 125 | 7 | 128 | 1.50e-48 | 154 |
MS.gene51078.t1 | MTR_1g095850 | 64.865 | 111 | 39 | 0 | 7 | 117 | 73 | 183 | 5.31e-48 | 155 |
MS.gene51078.t1 | MTR_3g094690 | 69.903 | 103 | 31 | 0 | 5 | 107 | 46 | 148 | 1.26e-47 | 154 |
MS.gene51078.t1 | MTR_6g005080 | 49.315 | 146 | 63 | 1 | 4 | 149 | 8 | 142 | 2.47e-47 | 150 |
MS.gene51078.t1 | MTR_3g073690 | 61.207 | 116 | 44 | 1 | 5 | 120 | 8 | 122 | 1.92e-46 | 150 |
MS.gene51078.t1 | MTR_3g094690 | 68.932 | 103 | 31 | 1 | 5 | 107 | 46 | 147 | 4.83e-45 | 148 |
MS.gene51078.t1 | MTR_5g017950 | 59.200 | 125 | 50 | 1 | 4 | 127 | 6 | 130 | 6.18e-45 | 150 |
MS.gene51078.t1 | MTR_3g071420 | 67.000 | 100 | 33 | 0 | 4 | 103 | 12 | 111 | 6.07e-44 | 144 |
MS.gene51078.t1 | MTR_3g452660 | 62.136 | 103 | 39 | 0 | 4 | 106 | 5 | 107 | 6.72e-44 | 147 |
MS.gene51078.t1 | MTR_5g075020 | 68.932 | 103 | 32 | 0 | 5 | 107 | 42 | 144 | 2.19e-43 | 144 |
MS.gene51078.t1 | MTR_5g075020 | 68.932 | 103 | 32 | 0 | 5 | 107 | 46 | 148 | 3.93e-43 | 143 |
MS.gene51078.t1 | MTR_5g083010 | 63.366 | 101 | 37 | 0 | 3 | 103 | 8 | 108 | 6.01e-42 | 138 |
MS.gene51078.t1 | MTR_8g040900 | 63.551 | 107 | 39 | 0 | 4 | 110 | 5 | 111 | 1.61e-41 | 139 |
MS.gene51078.t1 | MTR_5g093010 | 52.294 | 109 | 52 | 0 | 7 | 115 | 6 | 114 | 9.34e-39 | 129 |
MS.gene51078.t1 | MTR_7g096530 | 56.604 | 106 | 45 | 1 | 2 | 106 | 10 | 115 | 1.87e-38 | 130 |
MS.gene51078.t1 | MTR_1g070220 | 59.406 | 101 | 40 | 1 | 6 | 105 | 15 | 115 | 1.06e-37 | 128 |
MS.gene51078.t1 | MTR_8g036105 | 52.846 | 123 | 54 | 2 | 3 | 121 | 15 | 137 | 1.59e-37 | 128 |
MS.gene51078.t1 | MTR_7g028905 | 50.450 | 111 | 55 | 0 | 5 | 115 | 4 | 114 | 4.64e-37 | 124 |
MS.gene51078.t1 | MTR_7g075230 | 45.455 | 165 | 78 | 5 | 3 | 164 | 9 | 164 | 9.13e-37 | 125 |
MS.gene51078.t1 | MTR_8g036085 | 55.882 | 102 | 44 | 1 | 6 | 106 | 23 | 124 | 8.04e-36 | 124 |
MS.gene51078.t1 | MTR_7g074990 | 57.843 | 102 | 42 | 1 | 6 | 106 | 20 | 121 | 9.11e-36 | 124 |
MS.gene51078.t1 | MTR_7g096610 | 47.143 | 140 | 62 | 4 | 2 | 130 | 4 | 142 | 1.17e-34 | 121 |
MS.gene51078.t1 | MTR_5g080470 | 42.177 | 147 | 72 | 3 | 2 | 140 | 3 | 144 | 2.52e-33 | 117 |
MS.gene51078.t1 | MTR_1g070205 | 56.701 | 97 | 39 | 2 | 6 | 100 | 12 | 107 | 5.86e-33 | 117 |
MS.gene51078.t1 | MTR_6g027710 | 49.038 | 104 | 52 | 1 | 5 | 107 | 39 | 142 | 4.52e-32 | 114 |
MS.gene51078.t1 | MTR_8g079660 | 48.515 | 101 | 52 | 0 | 6 | 106 | 8 | 108 | 1.62e-30 | 111 |
MS.gene51078.t1 | MTR_8g079580 | 48.544 | 103 | 52 | 1 | 6 | 107 | 8 | 110 | 6.73e-29 | 106 |
MS.gene51078.t1 | MTR_8g079620 | 45.545 | 101 | 55 | 0 | 6 | 106 | 8 | 108 | 1.55e-28 | 105 |
MS.gene51078.t1 | MTR_6g027700 | 46.535 | 101 | 53 | 1 | 6 | 105 | 7 | 107 | 1.97e-28 | 104 |
MS.gene51078.t1 | MTR_6g011250 | 40.351 | 114 | 67 | 1 | 1 | 113 | 4 | 117 | 4.08e-27 | 100 |
MS.gene51078.t1 | MTR_4g107450 | 43.220 | 118 | 66 | 1 | 2 | 118 | 6 | 123 | 2.53e-24 | 96.3 |
MS.gene51078.t1 | MTR_6g011230 | 41.935 | 93 | 54 | 0 | 7 | 99 | 12 | 104 | 2.97e-24 | 94.0 |
MS.gene51078.t1 | MTR_6g011200 | 44.578 | 83 | 45 | 1 | 4 | 85 | 7 | 89 | 4.95e-23 | 92.0 |
MS.gene51078.t1 | MTR_2g100020 | 35.238 | 105 | 68 | 0 | 2 | 106 | 15 | 119 | 4.88e-21 | 87.0 |
MS.gene51078.t1 | MTR_4g099230 | 40.426 | 94 | 51 | 2 | 7 | 95 | 3 | 96 | 9.07e-21 | 83.6 |
MS.gene51078.t1 | MTR_8g017090 | 31.159 | 138 | 95 | 0 | 7 | 144 | 13 | 150 | 9.28e-20 | 84.0 |
MS.gene51078.t1 | MTR_4g088035 | 39.080 | 87 | 53 | 0 | 7 | 93 | 7 | 93 | 2.99e-19 | 82.0 |
MS.gene51078.t1 | MTR_5g085390 | 39.759 | 83 | 49 | 1 | 4 | 85 | 7 | 89 | 6.76e-18 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51078.t1 | AT2G30130 | 78.947 | 133 | 24 | 1 | 3 | 131 | 5 | 137 | 8.42e-74 | 219 |
MS.gene51078.t1 | AT1G31320 | 70.940 | 117 | 34 | 0 | 2 | 118 | 9 | 125 | 3.14e-52 | 164 |
MS.gene51078.t1 | AT2G28500 | 55.714 | 140 | 61 | 1 | 5 | 144 | 54 | 192 | 7.67e-52 | 165 |
MS.gene51078.t1 | AT1G07900 | 59.091 | 132 | 53 | 1 | 5 | 136 | 32 | 162 | 2.57e-51 | 162 |
MS.gene51078.t1 | AT1G16530 | 70.093 | 107 | 31 | 1 | 5 | 110 | 13 | 119 | 1.47e-50 | 160 |
MS.gene51078.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
MS.gene51078.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
MS.gene51078.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
MS.gene51078.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
MS.gene51078.t1 | AT3G27650 | 67.308 | 104 | 34 | 0 | 4 | 107 | 37 | 140 | 1.13e-48 | 155 |
MS.gene51078.t1 | AT2G30340 | 60.504 | 119 | 47 | 0 | 5 | 123 | 51 | 169 | 3.77e-47 | 154 |
MS.gene51078.t1 | AT2G30340 | 60.504 | 119 | 47 | 0 | 5 | 123 | 52 | 170 | 4.60e-47 | 154 |
MS.gene51078.t1 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.87e-45 | 151 |
MS.gene51078.t1 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.87e-45 | 151 |
MS.gene51078.t1 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.87e-45 | 151 |
MS.gene51078.t1 | AT2G40470 | 70.874 | 103 | 30 | 0 | 5 | 107 | 19 | 121 | 3.51e-45 | 147 |
MS.gene51078.t1 | AT2G40470 | 70.874 | 103 | 30 | 0 | 5 | 107 | 44 | 146 | 5.36e-45 | 147 |
MS.gene51078.t1 | AT5G66870 | 64.078 | 103 | 37 | 0 | 4 | 106 | 5 | 107 | 6.80e-44 | 147 |
MS.gene51078.t1 | AT3G26660 | 59.091 | 110 | 45 | 0 | 7 | 116 | 6 | 115 | 1.55e-43 | 140 |
MS.gene51078.t1 | AT3G26620 | 59.091 | 110 | 45 | 0 | 7 | 116 | 6 | 115 | 1.98e-43 | 140 |
MS.gene51078.t1 | AT3G11090 | 58.621 | 116 | 47 | 1 | 4 | 118 | 9 | 124 | 1.22e-41 | 137 |
MS.gene51078.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
MS.gene51078.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
MS.gene51078.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
MS.gene51078.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
MS.gene51078.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
MS.gene51078.t1 | AT4G00210 | 45.283 | 159 | 70 | 3 | 2 | 159 | 7 | 149 | 2.20e-37 | 128 |
MS.gene51078.t1 | AT2G42430 | 56.604 | 106 | 45 | 1 | 2 | 106 | 11 | 116 | 5.72e-37 | 127 |
MS.gene51078.t1 | AT2G45410 | 50.388 | 129 | 60 | 2 | 9 | 133 | 19 | 147 | 1.85e-36 | 125 |
MS.gene51078.t1 | AT3G03760 | 54.808 | 104 | 46 | 1 | 5 | 107 | 50 | 153 | 3.05e-36 | 126 |
MS.gene51078.t1 | AT2G42440 | 47.143 | 140 | 64 | 4 | 2 | 139 | 3 | 134 | 4.65e-35 | 122 |
MS.gene51078.t1 | AT2G31310 | 45.455 | 143 | 66 | 4 | 1 | 132 | 1 | 142 | 7.61e-35 | 120 |
MS.gene51078.t1 | AT2G45420 | 52.885 | 104 | 48 | 1 | 9 | 111 | 40 | 143 | 7.00e-34 | 120 |
MS.gene51078.t1 | AT4G00220 | 53.846 | 104 | 47 | 1 | 9 | 111 | 20 | 123 | 1.38e-33 | 118 |
MS.gene51078.t1 | AT3G58190 | 48.031 | 127 | 58 | 3 | 6 | 130 | 11 | 131 | 2.57e-33 | 117 |
MS.gene51078.t1 | AT5G06080 | 52.727 | 110 | 46 | 2 | 5 | 113 | 6 | 110 | 9.65e-32 | 112 |
MS.gene51078.t1 | AT3G50510 | 47.573 | 103 | 54 | 0 | 4 | 106 | 10 | 112 | 2.65e-30 | 109 |
MS.gene51078.t1 | AT3G50510 | 47.573 | 103 | 54 | 0 | 4 | 106 | 10 | 112 | 2.65e-30 | 109 |
MS.gene51078.t1 | AT5G35900 | 42.718 | 103 | 59 | 0 | 7 | 109 | 6 | 108 | 1.97e-25 | 97.1 |
MS.gene51078.t1 | AT1G72980 | 39.130 | 115 | 69 | 1 | 2 | 115 | 9 | 123 | 1.78e-23 | 92.4 |
MS.gene51078.t1 | AT3G47870 | 36.190 | 105 | 67 | 0 | 2 | 106 | 32 | 136 | 3.74e-23 | 93.6 |
MS.gene51078.t1 | AT3G13850 | 38.947 | 95 | 58 | 0 | 7 | 101 | 37 | 131 | 8.90e-22 | 89.0 |
MS.gene51078.t1 | AT1G06280 | 45.455 | 77 | 42 | 0 | 7 | 83 | 25 | 101 | 1.96e-19 | 81.6 |
MS.gene51078.t1 | AT2G19820 | 37.079 | 89 | 55 | 1 | 5 | 92 | 11 | 99 | 1.30e-16 | 72.0 |
MS.gene51078.t1 | AT4G22700 | 36.634 | 101 | 62 | 2 | 7 | 106 | 6 | 105 | 8.66e-16 | 71.6 |
MS.gene51078.t1 | AT5G15060 | 43.243 | 74 | 38 | 2 | 7 | 77 | 18 | 90 | 5.16e-14 | 65.9 |
MS.gene51078.t1 | AT1G36000 | 29.348 | 92 | 65 | 0 | 1 | 92 | 4 | 95 | 8.00e-13 | 62.0 |
MS.gene51078.t1 | AT2G19510 | 27.174 | 92 | 67 | 0 | 1 | 92 | 4 | 95 | 7.58e-11 | 57.0 |
Find 22 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATCTGCTCTTTGGTGAAT+TGG | 0.247897 | 5.1:-65576655 | None:intergenic |
CTCACTCAGTACCTTAATTA+TGG | 0.253719 | 5.1:+65576895 | MS.gene51078:CDS |
TGTGAACTATGGCAAACTTT+TGG | 0.274301 | 5.1:-65575802 | None:intergenic |
CATCTGCTCTTTGGTGAATT+GGG | 0.326240 | 5.1:-65576654 | None:intergenic |
TGTTCACTGCATCTGCTCTT+TGG | 0.348086 | 5.1:-65576663 | None:intergenic |
TAGAAGAAGAACCATAATTA+AGG | 0.350630 | 5.1:-65576906 | None:intergenic |
GCTCCAACACAGCCATAAAC+TGG | 0.374722 | 5.1:-65576721 | None:intergenic |
TAATATGTATGGACATGATA+TGG | 0.378652 | 5.1:+65576963 | MS.gene51078:CDS |
TATAGTAAGATTTCTGATCT+TGG | 0.393066 | 5.1:-65576861 | None:intergenic |
AGAGTGAGGGATCCAGTTTA+TGG | 0.403662 | 5.1:+65576709 | MS.gene51078:CDS |
TCTTGGTTGATTTGTGGTGT+TGG | 0.412347 | 5.1:-65576844 | None:intergenic |
GGTTCATGAGAAGGAAAATA+AGG | 0.413213 | 5.1:-65575779 | None:intergenic |
CAATGTTAGCAAAATGTTGC+AGG | 0.415314 | 5.1:+65575841 | MS.gene51078:CDS |
CTTAAGAGAGATAATATGTA+TGG | 0.442326 | 5.1:+65576952 | MS.gene51078:CDS |
TTCTGATCTTGGTTGATTTG+TGG | 0.443495 | 5.1:-65576850 | None:intergenic |
GGTACTGAGTGAGTTCATCT+TGG | 0.471762 | 5.1:-65576885 | None:intergenic |
GATCCAGTTTATGGCTGTGT+TGG | 0.485932 | 5.1:+65576718 | MS.gene51078:CDS |
AAAGTTTGCCATAGTTCACA+AGG | 0.602163 | 5.1:+65575805 | MS.gene51078:CDS |
AGAAGGAAAATAAGGAGCAA+AGG | 0.607624 | 5.1:-65575771 | None:intergenic |
ATGAAGCAAATGCAAGAGTG+AGG | 0.619290 | 5.1:+65576695 | MS.gene51078:CDS |
AGAAGCTTGCATGAAGCACA+TGG | 0.628381 | 5.1:-65575722 | None:intergenic |
TGAAGCAAATGCAAGAGTGA+GGG | 0.632506 | 5.1:+65576696 | MS.gene51078:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTGTTTTTTTTTTTTTATG+CGG | - | chr5.1:65576474-65576493 | None:intergenic | 10.0% |
!! | AAAAATACTAATCATTAGAA+AGG | - | chr5.1:65576344-65576363 | None:intergenic | 15.0% |
!! | AGTTTGTGAATAAAATATTT+GGG | + | chr5.1:65576033-65576052 | MS.gene51078:intron | 15.0% |
!! | TAATAGTAAACAACTAAAAA+AGG | - | chr5.1:65576191-65576210 | None:intergenic | 15.0% |
!!! | TAATTTTTTTTGTTTGAATC+AGG | + | chr5.1:65576627-65576646 | MS.gene51078:intron | 15.0% |
!!! | TAGTTTGTGAATAAAATATT+TGG | + | chr5.1:65576032-65576051 | MS.gene51078:intron | 15.0% |
!!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr5.1:65576133-65576152 | None:intergenic | 15.0% |
!! | AAACACTTAAAAAAAGTAAG+AGG | - | chr5.1:65575869-65575888 | None:intergenic | 20.0% |
!! | TAAGTGTTTATTATTGTTCA+AGG | + | chr5.1:65576386-65576405 | MS.gene51078:intron | 20.0% |
!! | TGTTTACTATTATAGTTATG+AGG | + | chr5.1:65576199-65576218 | MS.gene51078:intron | 20.0% |
!!! | TACTTTCTTTGATGATTAAA+GGG | + | chr5.1:65575893-65575912 | MS.gene51078:intron | 20.0% |
!!! | TGTACTTATGTTTTTATTCA+AGG | + | chr5.1:65575991-65576010 | MS.gene51078:intron | 20.0% |
!!! | TTACTTTCTTTGATGATTAA+AGG | + | chr5.1:65575892-65575911 | MS.gene51078:intron | 20.0% |
!!! | TTTTTTTATGCGGAAAATTA+GGG | - | chr5.1:65576464-65576483 | None:intergenic | 20.0% |
!!! | TTTTTTTTATGCGGAAAATT+AGG | - | chr5.1:65576465-65576484 | None:intergenic | 20.0% |
! | ACAAAAATCACAATCAAATG+TGG | - | chr5.1:65576276-65576295 | None:intergenic | 25.0% |
! | CTTAAGAGAGATAATATGTA+TGG | + | chr5.1:65576952-65576971 | MS.gene51078:CDS | 25.0% |
! | TAATATGTATGGACATGATA+TGG | + | chr5.1:65576963-65576982 | MS.gene51078:CDS | 25.0% |
! | TAGAAGAAGAACCATAATTA+AGG | - | chr5.1:65576909-65576928 | None:intergenic | 25.0% |
! | TATAGTAAGATTTCTGATCT+TGG | - | chr5.1:65576864-65576883 | None:intergenic | 25.0% |
!!! | ATTTTTGTTTTGCGATGTTA+AGG | + | chr5.1:65576288-65576307 | MS.gene51078:intron | 25.0% |
!!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr5.1:65576123-65576142 | None:intergenic | 25.0% |
AAGAACACAACAATTGATCA+CGG | - | chr5.1:65576529-65576548 | None:intergenic | 30.0% | |
ATTATAGTTATGAGGAGTTG+AGG | + | chr5.1:65576207-65576226 | MS.gene51078:intron | 30.0% | |
CTCTATTGTTGAAGACATAT+TGG | + | chr5.1:65576496-65576515 | MS.gene51078:intron | 30.0% | |
!! | GTAGAATCAGACTTGTTATT+CGG | + | chr5.1:65576567-65576586 | MS.gene51078:intron | 30.0% |
AAAGTTTGCCATAGTTCACA+AGG | + | chr5.1:65575805-65575824 | MS.gene51078:CDS | 35.0% | |
ACCAAAAACCTTGTGAACTA+TGG | - | chr5.1:65575816-65575835 | None:intergenic | 35.0% | |
AGAAGGAAAATAAGGAGCAA+AGG | - | chr5.1:65575774-65575793 | None:intergenic | 35.0% | |
CAATGTTAGCAAAATGTTGC+AGG | + | chr5.1:65575841-65575860 | MS.gene51078:CDS | 35.0% | |
CACAAACTATTCAACCTACA+AGG | - | chr5.1:65576021-65576040 | None:intergenic | 35.0% | |
CTCACTCAGTACCTTAATTA+TGG | + | chr5.1:65576895-65576914 | MS.gene51078:CDS | 35.0% | |
GGTTCATGAGAAGGAAAATA+AGG | - | chr5.1:65575782-65575801 | None:intergenic | 35.0% | |
TTATTCAAGGTTCACCTTGT+AGG | + | chr5.1:65576004-65576023 | MS.gene51078:intron | 35.0% | |
! | GTGAACTATGGCAAACTTTT+GGG | - | chr5.1:65575804-65575823 | None:intergenic | 35.0% |
! | TGAACTATGGCAAACTTTTG+GGG | - | chr5.1:65575803-65575822 | None:intergenic | 35.0% |
! | TGTGAACTATGGCAAACTTT+TGG | - | chr5.1:65575805-65575824 | None:intergenic | 35.0% |
!! | TTCTGATCTTGGTTGATTTG+TGG | - | chr5.1:65576853-65576872 | None:intergenic | 35.0% |
!!! | TAACTTGCTCATTTTGCATC+TGG | - | chr5.1:65576822-65576841 | None:intergenic | 35.0% |
ACAACAATTGATCACGGAGT+TGG | - | chr5.1:65576523-65576542 | None:intergenic | 40.0% | |
ATAGTTATGAGGAGTTGAGG+AGG | + | chr5.1:65576210-65576229 | MS.gene51078:intron | 40.0% | |
ATGAAGCAAATGCAAGAGTG+AGG | + | chr5.1:65576695-65576714 | MS.gene51078:CDS | 40.0% | |
CAACAATTGATCACGGAGTT+GGG | - | chr5.1:65576522-65576541 | None:intergenic | 40.0% | |
CATCTGCTCTTTGGTGAATT+GGG | - | chr5.1:65576657-65576676 | None:intergenic | 40.0% | |
GTTAAGGATTGCAATACGAG+AGG | + | chr5.1:65576304-65576323 | MS.gene51078:intron | 40.0% | |
TGAAGCAAATGCAAGAGTGA+GGG | + | chr5.1:65576696-65576715 | MS.gene51078:CDS | 40.0% | |
! | GCCATAGTTCACAAGGTTTT+TGG | + | chr5.1:65575812-65575831 | MS.gene51078:CDS | 40.0% |
! | GGGTTAGAGAGTACAAAACT+TGG | - | chr5.1:65576444-65576463 | None:intergenic | 40.0% |
!! | TCTTGGTTGATTTGTGGTGT+TGG | - | chr5.1:65576847-65576866 | None:intergenic | 40.0% |
!!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr5.1:65575791-65575810 | None:intergenic | 40.0% |
AGAAGCTTGCATGAAGCACA+TGG | - | chr5.1:65575725-65575744 | None:intergenic | 45.0% | |
AGAGTGAGGGATCCAGTTTA+TGG | + | chr5.1:65576709-65576728 | MS.gene51078:CDS | 45.0% | |
GATCCAGTTTATGGCTGTGT+TGG | + | chr5.1:65576718-65576737 | MS.gene51078:CDS | 45.0% | |
GCATCTGCTCTTTGGTGAAT+TGG | - | chr5.1:65576658-65576677 | None:intergenic | 45.0% | |
TGTTCACTGCATCTGCTCTT+TGG | - | chr5.1:65576666-65576685 | None:intergenic | 45.0% | |
TTGCGACACAATCACGATTG+AGG | + | chr5.1:65576241-65576260 | MS.gene51078:intron | 45.0% | |
! | GGTACTGAGTGAGTTCATCT+TGG | - | chr5.1:65576888-65576907 | None:intergenic | 45.0% |
GCTCCAACACAGCCATAAAC+TGG | - | chr5.1:65576724-65576743 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 65575707 | 65576993 | 65575707 | ID=MS.gene51078 |
chr5.1 | mRNA | 65575707 | 65576993 | 65575707 | ID=MS.gene51078.t1;Parent=MS.gene51078 |
chr5.1 | exon | 65575707 | 65575862 | 65575707 | ID=MS.gene51078.t1.exon1;Parent=MS.gene51078.t1 |
chr5.1 | CDS | 65575707 | 65575862 | 65575707 | ID=cds.MS.gene51078.t1;Parent=MS.gene51078.t1 |
chr5.1 | exon | 65576649 | 65576993 | 65576649 | ID=MS.gene51078.t1.exon2;Parent=MS.gene51078.t1 |
chr5.1 | CDS | 65576649 | 65576993 | 65576649 | ID=cds.MS.gene51078.t1;Parent=MS.gene51078.t1 |
Gene Sequence |
Protein sequence |