AlfalfaGEDB | MS.gene51148

M. sativa cultivar XinJiangDaYe / MS.gene51148

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51148.t1	ATO87670.1	92.9	85	6	0	172	256	89	173	8.70E-37	164.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51148.t1	Q2V9B0	79.8	84	17	0	172	255	94	177	7.7e-34	145.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51148.t1	A0A072V1C4	92.9	85	6	0	172	256	83	167	6.3e-37	164.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene51148.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51148.t1	MTR_4g107230	92.941	85	6	0	172	256	83	167	4.12e-39	137
MS.gene51148.t1	MTR_0036s0260	86.765	68	9	0	173	240	28	95	1.83e-36	128
MS.gene51148.t1	MTR_2g090305	83.824	68	11	0	173	240	28	95	2.97e-34	122
MS.gene51148.t1	MTR_4g100630	75.362	69	17	0	172	240	94	162	1.08e-32	122
MS.gene51148.t1	MTR_6g092540	77.273	66	15	0	172	237	96	161	1.32e-32	120
MS.gene51148.t1	MTR_2g100930	70.423	71	21	0	172	242	108	178	3.52e-32	121
MS.gene51148.t1	MTR_5g037080	85.915	71	10	0	172	242	101	171	5.16e-31	117
MS.gene51148.t1	MTR_8g101650	74.242	66	16	1	172	237	104	168	4.70e-30	114
MS.gene51148.t1	MTR_4g111975	70.588	68	20	0	172	239	137	204	5.19e-29	111
MS.gene51148.t1	MTR_1g111830	61.250	80	31	0	172	251	123	202	2.74e-28	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51148.t1	AT5G47390	65.517	87	30	0	172	258	95	181	2.49e-36	132
MS.gene51148.t1	AT1G49010	72.059	68	19	0	172	239	133	200	1.87e-29	113
MS.gene51148.t1	AT1G70000	73.171	82	22	0	172	253	97	178	6.91e-29	110
MS.gene51148.t1	AT1G70000	73.171	82	22	0	172	253	97	178	6.91e-29	110
MS.gene51148.t1	AT5G56840	65.385	78	22	2	172	248	90	163	6.91e-28	107
MS.gene51148.t1	AT5G04760	59.551	89	35	1	159	246	85	173	7.07e-28	106
MS.gene51148.t1	AT5G08520	67.647	68	22	0	172	239	117	184	2.16e-27	107
MS.gene51148.t1	AT2G38090	57.143	91	37	1	158	246	124	214	2.61e-27	107
MS.gene51148.t1	AT3G16350	62.921	89	31	1	172	258	136	224	2.84e-27	108
MS.gene51148.t1	AT1G74840	78.750	80	15	1	172	251	95	172	3.83e-27	105

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Find 61 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGTAGTAGCTTTGTA+TGG	0.511830	7.3:-27257561	None:intergenic
AACAGGTCAAGAATCAAGAT+AGG	0.553293	7.3:+27261046	MS.gene51148:CDS
AACGCATACCGAGGGATCGA+AGG	0.511646	7.3:-27257098	None:intergenic
AACTGCTGGCCCCACCGTGA+CGG	0.587658	7.3:-27256028	None:intergenic
AAGCTGGATGCTTTGGTTAT+GGG	0.364403	7.3:+27257521	MS.gene51148:CDS
AAGTTAACAAGGATACGTTT+TGG	0.484803	7.3:-27255990	None:intergenic
AATTCCAGTGGAGGCAGAAC+AGG	0.422715	7.3:+27261029	MS.gene51148:CDS
ACAAGTTACTGAAGTTAACA+AGG	0.643513	7.3:-27256001	None:intergenic
AGAAAGTGAGAAAAGGTGAT+TGG	0.439667	7.3:+27259230	MS.gene51148:CDS
AGAAGATTGTTGATTCTGTT+GGG	0.368197	7.3:+27257492	MS.gene51148:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAAATCACACACAG+AGG	-	chr7.3:27257597-27257616	None:intergenic	30.0%
AACACTCTTGGAATTCAAAA+TGG	+	chr7.3:27256110-27256129	MS.gene51148:intron	30.0%
AATCAAATGAAGTTGAATGG+TGG	+	chr7.3:27258260-27258279	MS.gene51148:intron	30.0%
AATGCAGCACAATTCAAAAT+TGG	-	chr7.3:27258821-27258840	None:intergenic	30.0%
ACAAATACCTCCAATCAAAA+AGG	-	chr7.3:27257205-27257224	None:intergenic	30.0%
ACAAGTTACTGAAGTTAACA+AGG	-	chr7.3:27256004-27256023	None:intergenic	30.0%
ACATGTGCACAAACTTTAAT+TGG	+	chr7.3:27258884-27258903	MS.gene51148:intron	30.0%
AGCTCATTAGTACATATTGT+TGG	+	chr7.3:27260286-27260305	MS.gene51148:intron	30.0%
ATACAAAGCTACTACTACTT+TGG	+	chr7.3:27257563-27257582	MS.gene51148:CDS	30.0%
ATGCATTTCAAGAGTTTACT+CGG	+	chr7.3:27260815-27260834	MS.gene51148:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	27255985	27261074	27255985	ID=MS.gene51148
chr7.3	mRNA	27255985	27261074	27255985	ID=MS.gene51148.t1;Parent=MS.gene51148
chr7.3	exon	27255985	27256035	27255985	ID=MS.gene51148.t1.exon1;Parent=MS.gene51148.t1
chr7.3	CDS	27255985	27256035	27255985	ID=cds.MS.gene51148.t1;Parent=MS.gene51148.t1
chr7.3	exon	27256799	27257111	27256799	ID=MS.gene51148.t1.exon2;Parent=MS.gene51148.t1
chr7.3	CDS	27256799	27257111	27256799	ID=cds.MS.gene51148.t1;Parent=MS.gene51148.t1
chr7.3	exon	27257237	27257280	27257237	ID=MS.gene51148.t1.exon3;Parent=MS.gene51148.t1
chr7.3	CDS	27257237	27257280	27257237	ID=cds.MS.gene51148.t1;Parent=MS.gene51148.t1
chr7.3	exon	27257479	27257584	27257479	ID=MS.gene51148.t1.exon4;Parent=MS.gene51148.t1
chr7.3	CDS	27257479	27257584	27257479	ID=cds.MS.gene51148.t1;Parent=MS.gene51148.t1
chr7.3	exon	27259182	27259390	27259182	ID=MS.gene51148.t1.exon5;Parent=MS.gene51148.t1
chr7.3	CDS	27259182	27259390	27259182	ID=cds.MS.gene51148.t1;Parent=MS.gene51148.t1
chr7.3	exon	27261021	27261074	27261021	ID=MS.gene51148.t1.exon6;Parent=MS.gene51148.t1
chr7.3	CDS	27261021	27261074	27261021	ID=cds.MS.gene51148.t1;Parent=MS.gene51148.t1

Gene Sequence

>MS.gene51148

ATGGGCCAAAACGTATCCTTGTTAACTTCAGTAACTTGTCCAACCGTCACGGTGGGGCCAGCAGTTTCCAAGCTTGATCTTACACAGAAACTCCCACTCTTCCTCAAGCTTAAGCTCTTGAGATTAACACTCTTGGAATTCAAAATGGAAGAAGAAAATGAAGTAGTAGAAGAAGAAGAACCAAGTGATAGCTTCGATGAAGAAGTACTATCGAAGACGGTGGTGCCAATCCATTTAGGGGAGGTGCAGAGATTAAGAGCCATTGGTGTTGGCATGTGGAGAGTGAAGAATTGGACTCTTGAGATATGGTCGTGTGGTGGTGGATGTGAAGAGGAAGAAGAGTGGGAGTGATTAATCAAATGACGGTGTTGCCCTTGGAGTTTGTGTATGGTATTGTTGCGGTTGTTAATATGAGGGTGGAGTTGGTAAATTTGAATGAAACGGAAATGAAAGAGATGTGCGATTGTGTGTGATATTGTTTTTGGAATTGTGATTTGTGACCCTTCTTCTTTTACATAATTGGATGCTAAGATTCCCTTAGAATATCTCTTTTATTTTTTATGTCAAAAAATCATTTTTTTTCATTTGGCACTTTTTCTATTAGGTGATGAACCAAATATCTATCTATCTATCTATCTATATAAAAGTTAACCCATAAACTAATGTTAGCCCTAATTTTAACCTAAAACTTAAGCTTACTATTACTAAATTACCCCTGACCTATTTAATTAAGAGATAAACATAAGAAGAAGAAAGAAAAACGCCCTGACCTGTTTTGTTGCTCGCAAAAACGCCCTGACCTGATTTTTTGTAGCGGTTTGTAGATAACAAAAATTCACTTTCGTTCATTGACAGAAACTCCTTTGTGTCATCGACGATATCAAGTTCGGCTCTTTCGTTCAACATCCGAATCAAGCCGAGACTCCGAATCATCGCCGAACGTATCATCGCCGAGACTCCGAATCAAGCCGAACATATCATCGCCGACATCCGAATCAGCGCCGATCTTCTCCTCGAAGCTTTAGTCATCGCCGCCGTTCAACCTCATCAAGGCAATAAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCCATGCAACATCATTTTCAAGACCTTCGATCCCTCGGTATGCGTTTTTAGTTTCGTTACGTTTTGATTGATTTTGATATCGCAATTAGGGTTTTTGTATCGCCGGTGTTGTTTTGATTGATTTTTTCCTTTTTGATTGGAGGTATTTGTTGGTTTCGTGAGAAGAATATGGTGCGCACCAGTATGAAGTGGAACCTGATGCTGAGGTTTTGGACATACTTGATACTGCTTCTAGACAGAAACAAGTTTTTTTTTAATTATCGATTAGTGGGTTGTTTTTTTTTAATGTTTTGATTAATTAATGTTTGAATTTGGTTAAGTTAACATTTTTTTATAAGATGTTTGTTGAGGTTTCACTTAAGTTGAATTGTGTATAGGTGACTATGGTAGCGAAGGTATACTAGGGTGATGCAAGAGAGAAGATTGTTGATTCTGTTGGGGATTTGAAGCTGGATGCTTTGGTTATGGGTAGCAGAGGTTCGGGTGCCATACAAAGCTACTACTACTTTGGTTTGTTTTCCTCTGTGTGTGATTTTTTCTTTATTGAAATATGATTTCGTTACAAAATAAAATATCGGAATTGTTTGCAGAACTATCCATGTACGGTTGCATTACTCTTTTCTAAGCCATAATTTCATATCTAGGTAATCAACATGTTGTTTGATTTAATTGTAACTGCATTTTATTCTTTTTTTTCTTCATATTTGACGAGGCTAACTAACCTAATCTGAACTTTGTGCCAAATACTCATTTATATGATTACTCAAAAAAAAAAATTGACTTTAAAACTTCATATATGTGTAATCAAGCCATTATTATACACACTGCTCAAACACGACTTTATTTTGAGACTTGAATTCCTATATTTTTTTCTTTTTAGTTCATGCGCAGTGTATATTTGAAAGTTGTAAATTGGTCAGTTTTTGACAGCTTAGATTTAGATTGAGACTTCCATCTCTGCGTCAACTTTCTTCTCCACATTCGATTATGTATTTTCCGGCGACAATATGTTGTTGTTAAGCAACATTAATCCAATATATCTGGCGCACCAGCAACAATGTGTCCATCCTCTATTCAAGTTCATTCTTTTCTATGACTAATTCACATTGTTTTCTAACTTATAGATGAAATTTTATATATTTATTCTGAATTTCATATAAAATTGTTATTAACAGCATAAAGTGGAATCAAATGAAGTTGAATGGTGGAGCTGAGCAGCAAAAAAGAGTTATGGGGTTCAAAGCCAGGAAGCGGTTGTGCTGCCATCTCACCGCAGCCCCAAAAGAATCAATAGACCACCGTGATCGATTCTGATGACATGGAATGGTGTTGCTCGGTCCATCAATCCCCCGATCATATAAGCCACACTCCCCTTAAACTATTATATTCTTTTCAATTTTCAACATTTTATATCAGATATCACAACACTTATATTGCTCTATGAATAGAGTAATTATATTTAACATATGAAATTATAGACCATGAATATTTTTGCTTCAATATTAATTGTGTCTGGCCTTTGTTTCAATTTGCTCCATCCAATTTTTATTACTTTTGCAAGCTTTTCTTTATAAGTTTAATCTTTCATCTCTAGCAGACAATGTCTATCATGAAGATTCAAAACCAAAAAATGTTTGTTACTGAGTTTTTGAGAGCTGTTTTTTGTGTGCCCCCTATCCTGTGTGTTTTTTGTGAATTTGCTCCTGGTTTGTAAGGTAGCAGGTTTGTTACTTACAAGGATGTCCAATTTTGAATTGTGCTGCATTATTCATTTAGGGGCTGAGAAGAGACTGCTATTGGAGTTAACATACATGTGCACAAACTTTAATTGGAATAACTACATCTTATGCAAGAGTAACTTTCACTTGGATTGAGCATTAAAGGTTGTTTACCTCAGGATTTTAAGTAGATATTTGACTACATTCTCTCTGAGCAAACAATGGCTACATGTCTCACGTTTAAATGGTTTTTGGCTATTGTTTAATAGAGATTCTATAAATTAACTAAAACTTGAAATTAACTTGATAATTTTTGTGTTTCTTCCTTTGTTTGAATTGATTGAAATTGAAAAGTAATTATTGTTATTGATTTTCTTTGAATGGATCAGGGATTCCGTGGACTGAGGAAGAGCACAAGATGTTTTTGGTTGGATTGGAGAAAGTGAGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAACAAGAACGCCTACGTATGTTGCAAGTCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATCGTCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACCGACACGGTAATTTTTTCGGCAATCTCTTAATAGAAACAATAGAACACTTTTTTGCCTAAATTTGTATTCAATTAGTTACTAATCAATAGAGTAGTATTATGGTATTGCAAAAATGATATTTAATTTTCTCTGTTATTTTTTTGGTTTTCTAATTTTGATTCAATCAAGTTCAATGCTATTAAGACTTTTGCCATTTAGGAATTTGAACTATTGTAAAGGAAACAAAAAAAAAACATAGCAGAAGTGCAACTTTTGCTTCTTTTTTTTTTTGTGTGGAAATCCTTTGGTAGTTGTAAAGAAATCTAACAAAACTAGAATCGTTTACTTTATCAAATTCATAGATACTTTCTATTTTTTGGCAAATATCTTCTAATTATGCAAACTAGGACTATGTATGAACCTTGAATGTATACCTTGGTGTTATATGTTAAGTGATTCATTTGTTTAAATGGTTCATTATGTTAGTCCTTTAGGTTTATAATACAAAATTGTGCCTAATGAAAGTCCCTAATTACATTGAATTTGTAAGTTGAATTCATTTGTTAAGTCATTCATTTTTAAATGGTTCTTTCAATTGAGAACTCCCACTTTACCGTAAGTTGAATTTGTAGCTTTTCTCGCTTTACGGTAAGTTGAATTTGTACCTTTTACTACTGTTGGTTCGTATATATTATTAGTGCCGTTATTTTTCATGGTATCAATAATCTTGAACATAGATCACAAAAAAATGTGAAACTAAGTAAAGCCTTAAATCATTTGGTGTACTGCTTTAATTCCATTAATGACATGTAGCATGGATTATGTATCCTTTGAATGGAGAGATTAATCACTATTTAATGAATGAAGATCCTGCAAACTTGGTTGGATTTGACATCCTTATGCACCAAATAGTACCTTTGATAGCTCATTAGTACATATTGTTGGCTTTCTTATTTGAATTTTATTCATGGCATCCTTCGCACACTTTTGATAACAGTCCAAACATTATTTCTTTCTTATTTTGTTTTCAAAGCATTCATATTCTTAAAGTATTTATTTGCTGTTATTCATTTTATAGTTTATTTGACTTCAAATCTAGCTGCATGGTTGGGACTTATGATCTCAAAGCATGTATGAGTTTTCTTTCTATTCTACTGCTAGATTGTTTTTGAAGAACATTGGTGATTATAACATTGCAATTTGTCTGAGAACTAAGAATTTCTGTTTAGAAAGCTATTTGTGGTTGTGCTCTTTTGATCTATTCTTTAGACACCTTATGCTTAATTTAGAGTATTTCTTATAATATGTATGGTTTTTTTAATTGCAGGATTGCATGAAAAAAATGTGTAACAGCCCGCAAGTTGTGTTAGTATGGACAGAAATAACCAACAGTGATTTAAAAACACTAGAATATATCTTATAAGATTATAAGGTTTATGTTTGTTCTCTGCATGCATTTCAAGAGTTTACTCGGCAAGCGTTGATATATATCTTATAATATTTGATGTATCTGGACATATCTCTGAGTAATAAAAGTTGATGTATTTGGTACACATTTTGAAGCGAATACATTAACTTTCTTTGACTTATTTTTGTTAATATTTTGTTAAGTAAGTGTATGATTTACATGATTTGAACAACTTTGTGTTTATGTTAGGTATCTGCAATTCCAGTGGAGGCAGAACAGGTCAAGAATCAAGATAGGCCTTGA

Protein sequence

>MS.gene51148.t1

MGQNVSLLTSVTCPTVTRFVDNKNSLSFIDRNSFVSSTISSSALSFNIRIKPRLRIIAERIIAETPNQAEHIIADIRISADLLLEALVIAAVQPHQGNKPLQVFVKENASMQHHFQDLRSLEEYGAHQYEVEPDAEGDAREKIVDSVGDLKLDALVMGSRGSGAIQSYYYFGIPWTEEEHKMFLVGLEKVRKGDWRGISRNYVKTRTPTYVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPVEAEQVKNQDRP