AlfalfaGEDB | MS.gene51286

M. sativa cultivar XinJiangDaYe / MS.gene51286

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF13947.9 PF14380.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51286.t1	XP_024641567.1	48.3	693	281	11	4	626	9	694	1.10E-162	583.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51286.t1	P0C5E2	35.3	638	363	15	11	626	7	616	7.8e-96	352.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51286.t1	A0A1S2Z0M2	47.5	689	289	11	3	626	8	688	1.4e-159	572.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51286.t1	MTR_6g044830	38.585	622	318	14	38	629	2	589	2.31e-122	376
MS.gene51286.t1	MTR_6g083020	37.816	632	335	15	13	627	21	611	8.45e-122	376
MS.gene51286.t1	MTR_7g082530	35.000	620	346	14	40	626	41	636	1.55e-108	342
MS.gene51286.t1	MTR_7g082530	35.000	620	346	14	40	626	41	636	1.65e-108	342
MS.gene51286.t1	MTR_6g044740	37.398	615	308	18	34	629	54	610	1.05e-103	328
MS.gene51286.t1	MTR_5g055310	43.750	400	196	9	247	626	198	588	1.99e-95	306
MS.gene51286.t1	MTR_1g110180	45.797	345	174	3	288	626	276	613	6.61e-91	295
MS.gene51286.t1	MTR_6g082940	55.472	265	100	8	2	255	3	260	6.29e-86	272
MS.gene51286.t1	MTR_6g082920	55.472	265	100	8	2	255	3	260	6.29e-86	272
MS.gene51286.t1	MTR_6g082820	56.250	256	102	6	5	255	10	260	1.29e-84	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51286.t1	AT5G38210	35.725	655	352	19	17	628	1	629	1.52e-121	376
MS.gene51286.t1	AT5G38210	35.562	658	355	19	14	628	16	647	2.39e-121	376
MS.gene51286.t1	AT1G18390	34.434	636	365	15	16	627	13	620	1.17e-115	360
MS.gene51286.t1	AT1G18390	36.071	621	346	17	29	627	23	614	3.40e-114	356
MS.gene51286.t1	AT1G66880	35.093	644	342	16	32	626	247	863	3.01e-109	350
MS.gene51286.t1	AT5G38210	34.656	655	360	21	10	628	13	635	4.23e-109	343
MS.gene51286.t1	AT1G66880	36.911	615	334	16	38	626	35	621	1.63e-108	342
MS.gene51286.t1	AT1G66880	35.429	652	337	17	28	626	622	1242	4.11e-106	348
MS.gene51286.t1	AT1G25390	48.973	292	146	2	337	627	279	568	3.50e-88	287
MS.gene51286.t1	AT1G25390	48.973	292	146	2	337	627	279	568	3.50e-88	287

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Find 135 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTCTACAGCTT+TGG	0.398933	6.3:-77821385	MS.gene51286:CDS
AAAATGAAGTTAGCAAGCTC+AGG	0.435226	6.3:-77821798	MS.gene51286:CDS
AAACATAACATATCAGTTCC+TGG	0.445697	6.3:-77822928	MS.gene51286:CDS
AAAGGAGAAGAGTCTGGATC+TGG	0.451510	6.3:+77823057	None:intergenic
AAATGAAGTTAGCAAGCTCA+GGG	0.632109	6.3:-77821797	MS.gene51286:CDS
AACGTGCTTATGATGAGCAC+AGG	0.573167	6.3:-77821333	MS.gene51286:CDS
AACTAATTGTTGCAGGAGGA+TGG	0.506979	6.3:-77822579	MS.gene51286:intron
AAGAAGCAGGAGGAAGAGAA+AGG	0.452533	6.3:+77823470	None:intergenic
AAGACCCAACCTAATTATTG+TGG	0.570655	6.3:-77823336	MS.gene51286:CDS
AATCAAACCTGCTAGGAGAA+GGG	0.588256	6.3:-77822210	MS.gene51286:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATAACATATCAGTTCC+TGG	-	chr6.3:77821681-77821700	MS.gene51286:CDS	30.0%
ACTGCAATATGAACTTCATT+AGG	+	chr6.3:77822741-77822760	None:intergenic	30.0%
ATTAACATCGGTATAATGCA+AGG	+	chr6.3:77821460-77821479	None:intergenic	30.0%
CAGTTTAATACTATAGAGGA+AGG	-	chr6.3:77821726-77821745	MS.gene51286:CDS	30.0%
CTATAATGTATCTTCGAATG+AGG	-	chr6.3:77821821-77821840	MS.gene51286:CDS	30.0%
CTTCCTCTATAGTATTAAAC+TGG	+	chr6.3:77821728-77821747	None:intergenic	30.0%
TAGCCAGTTTAATACTATAG+AGG	-	chr6.3:77821722-77821741	MS.gene51286:CDS	30.0%
TGCATTAGAGCATATTCATA+GGG	-	chr6.3:77823496-77823515	MS.gene51286:CDS	30.0%
TTAACATCGGTATAATGCAA+GGG	+	chr6.3:77821459-77821478	None:intergenic	30.0%
TTGCATTAGAGCATATTCAT+AGG	-	chr6.3:77823495-77823514	MS.gene51286:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	77821108	77823523	77821108	ID=MS.gene51286
chr6.3	mRNA	77821108	77823523	77821108	ID=MS.gene51286.t1;Parent=MS.gene51286
chr6.3	exon	77822728	77823523	77822728	ID=MS.gene51286.t1.exon1;Parent=MS.gene51286.t1
chr6.3	CDS	77822728	77823523	77822728	ID=cds.MS.gene51286.t1;Parent=MS.gene51286.t1
chr6.3	exon	77822554	77822586	77822554	ID=MS.gene51286.t1.exon2;Parent=MS.gene51286.t1
chr6.3	CDS	77822554	77822586	77822554	ID=cds.MS.gene51286.t1;Parent=MS.gene51286.t1
chr6.3	exon	77822188	77822454	77822188	ID=MS.gene51286.t1.exon3;Parent=MS.gene51286.t1
chr6.3	CDS	77822188	77822454	77822188	ID=cds.MS.gene51286.t1;Parent=MS.gene51286.t1
chr6.3	exon	77821108	77821901	77821108	ID=MS.gene51286.t1.exon4;Parent=MS.gene51286.t1
chr6.3	CDS	77821108	77821901	77821108	ID=cds.MS.gene51286.t1;Parent=MS.gene51286.t1

Gene Sequence

>MS.gene51286

ATGTCTCCACATTTTTCTTTCACCATCAACTCCTTTCTCTTCCTCCTGCTTCTTTTCTTAATCCAAATCCAAACACACGCCGTTACGGCAGATGAAATGTACACATCTTGTGCACCTTTCAGCTGCGGTAACTTCACATCTCTTTCATATCCGTTTTGGAGTTCAAAGACCCAACCTAATTATTGTGGTCACCCAAAGTTCAAGGTTGATTGCCATCATGGCATCTTGACTTTGGACATGATTTCACAAAGGTTTAAAATCATTTCCATAAACCAAACATCCCAATTGTTAAGGATTGCAAGGACATATTTATATGATGATGCTGCTATGGCTACACTTGATTCTTGTCCCTTGCATTATACCGATGTTAATGTGGATTTAGATTTTTTCCATTACACTTCCAATGATGAAAACTATACTCTATTGTATGAGTGTAGTGAGCTTCCAGATCCAGACTCTTCTCCTTTGATTTCAGAAATTTCTGAATTTACCGGATGCCTCATTGATGGTAAACGTCAAACATCATACCTAGTATTGAAAAATAGAGCAGTAGATTTTAATGTTCTAGGTTGCAAACATAACATATCAGTTCCTGGATTGAAAACATCGCTCACTAGCCAGTTTAATACTATAGAGGAAGGTTTTGAGGTTAGGTGGAGTGGTGTGGATGAGGAAAAGAAGTGTCATGGTTGCATGAAATATGGTAGATGTGGCTATAATGTATCTTCGAATGAGGTTATCTGTCTATCTTCTCAGAAATCTGCGACACCATCACCACAAATAGCACGAACACATGGTATTCTTTCTTCTCTTGATGTTTAACTATACTCTTCTGTTGAACTAGTTTATCACATATTTTTAAGTTGTTTATGCTGAACTATTCTATGAAATTATTACAATGTTAACTCATCATTTCTTTCACAACTAATTGTTGCAGGAGGATGGAATTCAAAGACAAAAATCATTCTTGGTAATAAATCCAATTTTTCTTGATATCTTTCATTATTTTTTCATGTAAATACTTAAATAAGATAATATACTGATCTTGATTTCCTACATTTTTTTAAAGGTGTTGTTTGTGGTGTGTTATCAACACTTATTGTGATCACAGCCGGGTATTTATGTTGGCGTCACGACACTTGTAGTTCTGCAGAGCTTGATCCAGAGTCTCTTAACCACTCTTCTCAACCATCTACTCAAGAAACACAGAGACTTGGAACAGCTGATAACTTTGGTGGAGTTCATCATTTCACTTTTAACGATCTTCGATGGTGCACAAGAAACTTCCACCAATCAAACCTGCTAGGAGAAGGGACTTTTGGGAAAGTATATCATGGTAAAACCTTGCACCTTCTTGTAGTAGAAGCAGAGTCTTTATGGTCAACAGTCATTGCAGTCAGTGATCATGTCTATATATCTAGATCAAACAATTAAGATCATGAATTTTAAATTGGCCAAAAGTCTCATGTGGGTCGAACAGTCTCTAGAACGACTGATAAACTGAATGCAGTGACAAAAGGAAATTCTGACCATAGGAAATCGAGTTTTTATTTATTGTATCTATTTCTATTTTAACATTCAATAATATTAACATATATTTTCTATGATATTTTCTTGTCTAGGTAAACTGCCTAATGAAGTTCATATTGCAGTGAAGAAGCTTAAGCGTCGTGATCTCAGCTCCAACCCATATTATATGTTTGAAAATGAAGTTAGCAAGCTCAGGGACCTTCAACATCCAAATATTGTTAAGTTATTAGGGTGCACCTCACGCCAAGGCCGCAGTAACATGCTTGTCTACGAGTATGTATCTAATGGAACTGTGGCTGATCACCTTCATGGCAACAAGGCACAAGAGGGCAGATTAACTTGGATGGTAAGGATGAATATTGCAGTGGAGACTGCCAGGGCACTGGAGCATCTTCATGCCTCAAAAGTAGTCCATAGAGATATAAAGAGCAGCAATATTCTTCTTGACGCCAACTTTCATGCAATAGTTGGAGATTTTGGACTCGCCCGCCATTTTCCGAGGGATCAAAGCCATGTTCAAACAAGGGCAAAAGGGACTCCAGGTTATATAGATCCTGAGTACGTTCGGAGCCATCACCTTACTCTTAAAAGTGATGTCTACAGCTTTGGAGTATTCATGTTTGAGTTGATTACATCAAAACGTGCTTATGATGAGCACAGGTCCAGGGATAGTATCAAATTGGCCTTCATGGCTTTGAAGAGAAAATCAAATCAAACCTTTTCTGAACTTGTGGATAGTAACCTCGGTTTTCATGCAGATCCAATGGCACATGAAATGATAAATCAGGTTGCTAACTTAGCTTTTCAATGTGTTTCTCAGGAGCCAAATATGAGACCTACCATGGCTGAGGTGTTGCTTGCATTAGAGCATATTCATAGGGCATAA

Protein sequence

>MS.gene51286.t1

MSPHFSFTINSFLFLLLLFLIQIQTHAVTADEMYTSCAPFSCGNFTSLSYPFWSSKTQPNYCGHPKFKVDCHHGILTLDMISQRFKIISINQTSQLLRIARTYLYDDAAMATLDSCPLHYTDVNVDLDFFHYTSNDENYTLLYECSELPDPDSSPLISEISEFTGCLIDGKRQTSYLVLKNRAVDFNVLGCKHNISVPGLKTSLTSQFNTIEEGFEVRWSGVDEEKKCHGCMKYGRCGYNVSSNEVICLSSQKSATPSPQIARTHGGWNSKTKIILGVVCGVLSTLIVITAGYLCWRHDTCSSAELDPESLNHSSQPSTQETQRLGTADNFGGVHHFTFNDLRWCTRNFHQSNLLGEGTFGKVYHGKLPNEVHIAVKKLKRRDLSSNPYYMFENEVSKLRDLQHPNIVKLLGCTSRQGRSNMLVYEYVSNGTVADHLHGNKAQEGRLTWMVRMNIAVETARALEHLHASKVVHRDIKSSNILLDANFHAIVGDFGLARHFPRDQSHVQTRAKGTPGYIDPEYVRSHHLTLKSDVYSFGVFMFELITSKRAYDEHRSRDSIKLAFMALKRKSNQTFSELVDSNLGFHADPMAHEMINQVANLAFQCVSQEPNMRPTMAEVLLALEHIHRA