Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51332.t1 | RYR21771.1 | 61.6 | 906 | 235 | 13 | 91 | 929 | 3 | 862 | 4.50E-269 | 937.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51332.t1 | Q6H7U2 | 31.1 | 447 | 250 | 15 | 95 | 514 | 11 | 426 | 5.1e-35 | 151.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51332.t1 | A0A445A5N9 | 61.6 | 906 | 235 | 13 | 91 | 929 | 3 | 862 | 3.3e-269 | 937.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51332.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51332.t1 | MTR_4g046697 | 93.362 | 467 | 25 | 3 | 62 | 528 | 1 | 461 | 0.0 | 889 |
| MS.gene51332.t1 | MTR_4g046697 | 95.011 | 441 | 20 | 2 | 88 | 528 | 1 | 439 | 0.0 | 861 |
| MS.gene51332.t1 | MTR_4g046697 | 94.724 | 398 | 19 | 2 | 131 | 528 | 19 | 414 | 0.0 | 766 |
| MS.gene51332.t1 | MTR_4g046707 | 96.389 | 360 | 11 | 1 | 570 | 929 | 1 | 358 | 0.0 | 714 |
| MS.gene51332.t1 | MTR_4g046697 | 95.702 | 349 | 14 | 1 | 88 | 436 | 1 | 348 | 0.0 | 683 |
| MS.gene51332.t1 | MTR_4g046697 | 95.425 | 306 | 13 | 1 | 131 | 436 | 19 | 323 | 0.0 | 590 |
| MS.gene51332.t1 | MTR_4g046697 | 92.254 | 284 | 20 | 2 | 245 | 528 | 34 | 315 | 0.0 | 529 |
| MS.gene51332.t1 | MTR_6g055230 | 48.443 | 289 | 108 | 3 | 640 | 924 | 46 | 297 | 2.98e-75 | 249 |
| MS.gene51332.t1 | MTR_4g046663 | 69.737 | 76 | 23 | 0 | 833 | 908 | 1 | 76 | 6.86e-31 | 117 |
| MS.gene51332.t1 | MTR_1g101540 | 29.258 | 229 | 141 | 5 | 669 | 878 | 93 | 319 | 8.16e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51332.t1 | AT1G05270 | 59.043 | 376 | 133 | 4 | 570 | 929 | 1 | 371 | 9.15e-150 | 447 |
| MS.gene51332.t1 | AT2G32340 | 56.395 | 344 | 133 | 5 | 599 | 926 | 13 | 355 | 2.00e-125 | 384 |
| MS.gene51332.t1 | AT2G32340 | 61.694 | 248 | 87 | 4 | 605 | 850 | 38 | 279 | 5.09e-97 | 306 |
| MS.gene51332.t1 | AT3G21810 | 38.014 | 292 | 166 | 4 | 95 | 371 | 7 | 298 | 8.97e-46 | 171 |
| MS.gene51332.t1 | AT3G21810 | 37.131 | 237 | 146 | 1 | 138 | 371 | 38 | 274 | 8.26e-34 | 135 |
| MS.gene51332.t1 | AT5G52030 | 31.148 | 244 | 132 | 7 | 669 | 878 | 94 | 335 | 6.20e-21 | 96.7 |
| MS.gene51332.t1 | AT5G52030 | 34.965 | 143 | 87 | 4 | 740 | 878 | 51 | 191 | 8.00e-16 | 79.0 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATGTTTGAAGTACTTTA+TGG | 0.122060 | 4.1:-50766173 | MS.gene51332:CDS |
| TCCAATCACCAAACATAATT+TGG | 0.129454 | 4.1:-50773490 | MS.gene51332:CDS |
| AGTAAGCTTGAGGTCTTTCC+TGG | 0.209500 | 4.1:-50765989 | MS.gene51332:CDS |
| TAAAGAGTTTCCAACTTTAA+TGG | 0.223585 | 4.1:-50764908 | MS.gene51332:CDS |
| GCGGATCTCCTTGCAGAAAA+AGG | 0.236552 | 4.1:-50773458 | MS.gene51332:CDS |
| GTTCCTGAATTCTAGAATTA+AGG | 0.245226 | 4.1:+50774007 | None:intergenic |
| CAGATAGATGCCAGATATTA+TGG | 0.246803 | 4.1:+50763992 | None:intergenic |
| TCTGTAGGTGTTGGCGTGGC+TGG | 0.248845 | 4.1:-50764020 | MS.gene51332:CDS |
| TAGCCTTAATTCTAGAATTC+AGG | 0.264978 | 4.1:-50774010 | MS.gene51332:CDS |
| TGGTGTTTGTGATGTTTATT+TGG | 0.265438 | 4.1:-50769375 | MS.gene51332:CDS |
| TCGAATGCACAATCAGAAAT+TGG | 0.265489 | 4.1:-50773783 | MS.gene51332:CDS |
| TTCTCAGACATTTCTAGAAT+TGG | 0.297684 | 4.1:-50773573 | MS.gene51332:CDS |
| TGATAATGGAATGGCATTAC+AGG | 0.320982 | 4.1:-50772222 | MS.gene51332:CDS |
| TTGCTGCGGGGAATCAAATC+TGG | 0.330633 | 4.1:+50772173 | None:intergenic |
| TACAAGGAATAAAGAAGAAT+TGG | 0.330803 | 4.1:-50764319 | MS.gene51332:CDS |
| GTCTTCGACGGCGGCGGCGG+GGG | 0.333014 | 4.1:+50769625 | None:intergenic |
| GAAGTCTTCGACGGCGGCGG+CGG | 0.333052 | 4.1:+50769622 | None:intergenic |
| GATGCGCGTCCATTGGAGTT+AGG | 0.335868 | 4.1:+50769669 | None:intergenic |
| CTGTAGGTGTTGGCGTGGCT+GGG | 0.344238 | 4.1:-50764019 | MS.gene51332:CDS |
| AAGTCTTCGACGGCGGCGGC+GGG | 0.345213 | 4.1:+50769623 | None:intergenic |
| CATTGCAGAGATAGCTGGTT+TGG | 0.349792 | 4.1:+50764055 | None:intergenic |
| AAGAGGATGGGGAGTGTAAA+AGG | 0.350759 | 4.1:-50773966 | MS.gene51332:intron |
| GCAGGAAAGAGAGACTATTT+AGG | 0.365279 | 4.1:-50777142 | MS.gene51332:intron |
| TAGAAATACTCTTGAGGATC+AGG | 0.371223 | 4.1:-50775532 | MS.gene51332:intron |
| TGAAAATTCACCATTATAGT+TGG | 0.375369 | 4.1:+50779542 | None:intergenic |
| GAAAACACAAGAAAGGAATA+TGG | 0.376155 | 4.1:-50772616 | MS.gene51332:CDS |
| ACTTTGGTACAAGACAAAAT+TGG | 0.377559 | 4.1:-50765140 | MS.gene51332:CDS |
| TCACATCCACGATCTCAAAA+TGG | 0.378158 | 4.1:-50769597 | MS.gene51332:CDS |
| GCTTACCCTTCAAAATCTTA+AGG | 0.379693 | 4.1:-50767191 | MS.gene51332:intron |
| GTTTGTGATGTTTATTTGGT+TGG | 0.379917 | 4.1:-50769371 | MS.gene51332:CDS |
| AGTGGCCAAAGTGATATTTC+TGG | 0.381454 | 4.1:-50775621 | MS.gene51332:CDS |
| GGTTGACGGCACTTCAATCC+TGG | 0.385159 | 4.1:+50772331 | None:intergenic |
| GAACTTACTGATCTCGTTCA+TGG | 0.387801 | 4.1:+50764875 | None:intergenic |
| TCAAGGACAGAAAATGATAA+TGG | 0.388686 | 4.1:-50772236 | MS.gene51332:CDS |
| GGAGGGTGGTTGAGAAGAAT+TGG | 0.390167 | 4.1:+50769699 | None:intergenic |
| TCAATCATTTCTCTCATAGT+AGG | 0.391823 | 4.1:+50766215 | None:intergenic |
| GGGGTGGTGGAGGAGGAATC+TGG | 0.395928 | 4.1:+50769644 | None:intergenic |
| AGGAAAGACCTCAAGCTTAC+TGG | 0.396406 | 4.1:+50765991 | None:intergenic |
| TCAATCATCCAGTCTGTTCA+TGG | 0.396743 | 4.1:-50781410 | MS.gene51332:CDS |
| GTTACTTCAACTCCATTGTC+AGG | 0.404300 | 4.1:+50772659 | None:intergenic |
| TATGAAGAAGCAATTAAGTA+TGG | 0.408284 | 4.1:-50765947 | MS.gene51332:CDS |
| GTGGTGGAGGAGGAATCTGG+TGG | 0.411485 | 4.1:+50769647 | None:intergenic |
| GAGGGTGGTTGAGAAGAATT+GGG | 0.413398 | 4.1:+50769700 | None:intergenic |
| GCTGGGGTTGCCATAATATC+TGG | 0.417138 | 4.1:-50764002 | MS.gene51332:CDS |
| AAAATGTATCCAACCTGTAC+AGG | 0.418915 | 4.1:+50765899 | None:intergenic |
| GCGTCGTCTGCTCCTGCATC+AGG | 0.418956 | 4.1:+50769497 | None:intergenic |
| TCCAAATTATGTTTGGTGAT+TGG | 0.421141 | 4.1:+50773489 | None:intergenic |
| ATGAATGAAAGGCGCGAGTT+GGG | 0.425930 | 4.1:+50769751 | None:intergenic |
| TCTGGTGGATGCGCGTCCAT+TGG | 0.449204 | 4.1:+50769662 | None:intergenic |
| CACGACTCGAGCACAATTCA+AGG | 0.450223 | 4.1:+50767221 | None:intergenic |
| CAGAAGACATAGGAGAAAAC+AGG | 0.454769 | 4.1:-50775649 | MS.gene51332:CDS |
| GACAAAACTAACCGATAGTT+GGG | 0.456546 | 4.1:+50775363 | None:intergenic |
| ATTGCAGAGATAGCTGGTTT+GGG | 0.457276 | 4.1:+50764056 | None:intergenic |
| GTTCTGTTCCAAATTATGTT+TGG | 0.459172 | 4.1:+50773482 | None:intergenic |
| TCGGATCGATGATCATTCTT+CGG | 0.462677 | 4.1:-50769552 | MS.gene51332:CDS |
| TCTCGAGCCGGTGAATATCT+TGG | 0.463968 | 4.1:+50777073 | None:intergenic |
| TCTTGTGAATCTTCTGCTGA+TGG | 0.464383 | 4.1:-50769398 | MS.gene51332:CDS |
| AAACGTGCATGCAGGGCATT+CGG | 0.468056 | 4.1:-50772759 | MS.gene51332:intron |
| TTTAGGTAATAATGACTTGA+GGG | 0.469756 | 4.1:-50777125 | MS.gene51332:CDS |
| ACAACACGCTCGACGCAACT+TGG | 0.469935 | 4.1:-50779715 | MS.gene51332:CDS |
| AGACAAAACTAACCGATAGT+TGG | 0.470883 | 4.1:+50775362 | None:intergenic |
| GTAAGCAATGGTGAGAATAC+TGG | 0.475904 | 4.1:-50773519 | MS.gene51332:CDS |
| ATGAAGGAGTGAAGAAAGAG+TGG | 0.479166 | 4.1:+50779840 | None:intergenic |
| TTATGGCTGGTTCCTTGCCA+AGG | 0.479240 | 4.1:-50766156 | MS.gene51332:intron |
| GAGATAGCTGGTTTGGGAGA+TGG | 0.479500 | 4.1:+50764062 | None:intergenic |
| AGATCAGTTGTGGCTGTTGT+TGG | 0.480034 | 4.1:-50764353 | MS.gene51332:CDS |
| AGTCTTCGACGGCGGCGGCG+GGG | 0.480110 | 4.1:+50769624 | None:intergenic |
| GTCTTTACATCTGTAGGTGT+TGG | 0.482799 | 4.1:-50764029 | MS.gene51332:CDS |
| ATGCGCGTCCATTGGAGTTA+GGG | 0.482953 | 4.1:+50769670 | None:intergenic |
| TCGTCTGCTCCTCCTGATGC+AGG | 0.483156 | 4.1:-50769509 | MS.gene51332:CDS |
| ACTCTCATTGCAGAGATAGC+TGG | 0.483703 | 4.1:+50764050 | None:intergenic |
| AAAGTACTTCAAACATGTTA+CGG | 0.487465 | 4.1:+50766177 | None:intergenic |
| GTTATTAAGATCATCAGAGC+TGG | 0.494439 | 4.1:+50765084 | None:intergenic |
| CGACCTCTTGCCTCTCGAGC+CGG | 0.496526 | 4.1:+50777061 | None:intergenic |
| GCTTCTTCAGATGAAGGAGA+TGG | 0.498793 | 4.1:-50764971 | MS.gene51332:intron |
| TGCTGCGGGGAATCAAATCT+GGG | 0.499304 | 4.1:+50772174 | None:intergenic |
| TGGAGTTAGGGTGCAGCGGA+GGG | 0.499450 | 4.1:+50769682 | None:intergenic |
| CAACAACATTCAGTCAGAAA+AGG | 0.500378 | 4.1:-50772582 | MS.gene51332:intron |
| TTCTAGAATTCAGGAACTTG+AGG | 0.500849 | 4.1:-50774001 | MS.gene51332:CDS |
| ACAAGGGTCTCCATTAAAGT+TGG | 0.503321 | 4.1:+50764898 | None:intergenic |
| CAGGTCCGACTTCAAAGGTT+CGG | 0.509285 | 4.1:-50773606 | MS.gene51332:CDS |
| ACTTCAATCCTGGATTCCTT+CGG | 0.509539 | 4.1:+50772341 | None:intergenic |
| TCCCCGCAGCAATTATTCAC+AGG | 0.509785 | 4.1:-50772162 | MS.gene51332:intron |
| AATGAAGTCTTCGACGGCGG+CGG | 0.509858 | 4.1:+50769619 | None:intergenic |
| GTTACCGTTGTGTTTATCAT+CGG | 0.510198 | 4.1:-50781348 | MS.gene51332:CDS |
| TGTTTGAAGTACTTTATGGC+TGG | 0.512196 | 4.1:-50766169 | MS.gene51332:CDS |
| AGCGTTGATATTGTAAGCAA+TGG | 0.513750 | 4.1:-50773531 | MS.gene51332:CDS |
| CTGATACTAATGAAACTTCA+AGG | 0.514385 | 4.1:-50772253 | MS.gene51332:CDS |
| AAGCAATTAAGTATGGTGGC+AGG | 0.514395 | 4.1:-50765940 | MS.gene51332:CDS |
| TGTAGGTGTTGGCGTGGCTG+GGG | 0.514441 | 4.1:-50764018 | MS.gene51332:CDS |
| GTCCGCCACATTATTAAAAG+TGG | 0.514526 | 4.1:-50764387 | MS.gene51332:CDS |
| AACTTCCAGAAATATCACTT+TGG | 0.517782 | 4.1:+50775616 | None:intergenic |
| AAATTATGTTTGGTGATTGG+AGG | 0.521526 | 4.1:+50773492 | None:intergenic |
| ACTAGGCACCAAGATCTTGA+AGG | 0.524279 | 4.1:-50772638 | MS.gene51332:CDS |
| AACCTGTGAATAATTGCTGC+GGG | 0.525149 | 4.1:+50772160 | None:intergenic |
| GTTGATATTGAGCATGATAA+CGG | 0.525710 | 4.1:-50772278 | MS.gene51332:CDS |
| ACATACAGCCGAAGGAATCC+AGG | 0.526971 | 4.1:-50772349 | MS.gene51332:intron |
| CTCAGTTAAACAAAGAGGAT+GGG | 0.527683 | 4.1:-50773978 | MS.gene51332:CDS |
| ATCACCTCCAAGATATTCAC+CGG | 0.528176 | 4.1:-50777080 | MS.gene51332:CDS |
| TGGAATGGCATTACAGGTGA+AGG | 0.528941 | 4.1:-50772216 | MS.gene51332:CDS |
| GAAAAGTTGAAGAAGAATGA+AGG | 0.529515 | 4.1:+50779824 | None:intergenic |
| TTGGAGTTAGGGTGCAGCGG+AGG | 0.532602 | 4.1:+50769681 | None:intergenic |
| TGAATCCACCGCTGCGACGA+CGG | 0.534633 | 4.1:+50769475 | None:intergenic |
| CTTGAAGGAAAACACAAGAA+AGG | 0.535513 | 4.1:-50772623 | MS.gene51332:CDS |
| AGTTAGGGTGCAGCGGAGGG+TGG | 0.535563 | 4.1:+50769685 | None:intergenic |
| CTCTGATGATCTTAATAACA+TGG | 0.536497 | 4.1:-50765080 | MS.gene51332:intron |
| CAATAATTCCATGAACAGAC+TGG | 0.536995 | 4.1:+50781402 | None:intergenic |
| CGACGCCGTCGTCGCAGCGG+TGG | 0.537022 | 4.1:-50769480 | MS.gene51332:CDS |
| TTCTAGAATTGGTGCTGATG+AGG | 0.537743 | 4.1:-50773562 | MS.gene51332:CDS |
| TGAGGTCTCCAGAGAAAAGA+AGG | 0.539215 | 4.1:-50776598 | MS.gene51332:intron |
| GCTCAGTTAAACAAAGAGGA+TGG | 0.540853 | 4.1:-50773979 | MS.gene51332:CDS |
| GGAAGAAAATCGTCGAAGCT+CGG | 0.540943 | 4.1:+50779563 | None:intergenic |
| TCCTGGGTCTGAGTTTCGTG+TGG | 0.541592 | 4.1:-50765972 | MS.gene51332:CDS |
| ACCTTCGAGGTAGTTGGCAG+CGG | 0.542359 | 4.1:+50781372 | None:intergenic |
| CATGGAGTAAGATGCCACTT+TGG | 0.542574 | 4.1:-50765156 | MS.gene51332:CDS |
| ACTTGGTGACCGCCCTGTAC+AGG | 0.542788 | 4.1:-50765912 | MS.gene51332:intron |
| TCAACTTTGAACAATTCGAT+CGG | 0.545191 | 4.1:+50779685 | None:intergenic |
| GGAGTTGAGTGCGAGTGAGG+TGG | 0.547101 | 4.1:+50769774 | None:intergenic |
| ACCGTTGTGTTTATCATCGG+AGG | 0.549225 | 4.1:-50781345 | MS.gene51332:intron |
| GAATGTTCACATACCATGAC+AGG | 0.549536 | 4.1:+50764290 | None:intergenic |
| TGAATGAAAGGCGCGAGTTG+GGG | 0.550550 | 4.1:+50769752 | None:intergenic |
| GATGAATGAAAGGCGCGAGT+TGG | 0.551408 | 4.1:+50769750 | None:intergenic |
| CCGCTGCACCCTAACTCCAA+TGG | 0.553073 | 4.1:-50769678 | MS.gene51332:CDS |
| AGAGGTCGGCAGACCATTCG+CGG | 0.553269 | 4.1:-50777046 | MS.gene51332:intron |
| GCTTATCAGATAGCATGGTT+CGG | 0.553430 | 4.1:-50769571 | MS.gene51332:CDS |
| GAATTGGAAGCAACCTGTCA+TGG | 0.555197 | 4.1:-50764303 | MS.gene51332:intron |
| CTTCTTGAACACTCTCATCC+AGG | 0.556266 | 4.1:+50774037 | None:intergenic |
| ATCTTGTGTCTAACCGCGAA+TGG | 0.556846 | 4.1:+50777033 | None:intergenic |
| ACATTCCTCGATAACTCCTC+AGG | 0.557097 | 4.1:+50769431 | None:intergenic |
| AGACGAAGCTGCTGCATCGA+CGG | 0.557145 | 4.1:+50769526 | None:intergenic |
| CGAGCCGGTGAATATCTTGG+AGG | 0.558434 | 4.1:+50777076 | None:intergenic |
| GTAAGCTTGAGGTCTTTCCT+GGG | 0.562244 | 4.1:-50765988 | MS.gene51332:CDS |
| GACAGAAAATGATAATGGAA+TGG | 0.562419 | 4.1:-50772231 | MS.gene51332:CDS |
| TTACTTCAACTCCATTGTCA+GGG | 0.564290 | 4.1:+50772660 | None:intergenic |
| AGTTGTGGCTGTTGTTGGAA+AGG | 0.565891 | 4.1:-50764348 | MS.gene51332:CDS |
| GTTGTGGCTGTTGTTGGAAA+GGG | 0.566868 | 4.1:-50764347 | MS.gene51332:CDS |
| AAGATATTCACCGGCTCGAG+AGG | 0.567135 | 4.1:-50777071 | MS.gene51332:CDS |
| TGTGAGGAGGCCCCTGACAA+TGG | 0.567240 | 4.1:-50772671 | MS.gene51332:CDS |
| TAACTTAATGTGCAGTATGA+GGG | 0.569651 | 4.1:-50772062 | MS.gene51332:intron |
| GTGAATGAAGTCTTCGACGG+CGG | 0.570074 | 4.1:+50769616 | None:intergenic |
| GATCACAGGTCCGACTTCAA+AGG | 0.571245 | 4.1:-50773611 | MS.gene51332:CDS |
| GACAACATGAGCTGCCATGC+TGG | 0.571700 | 4.1:+50772310 | None:intergenic |
| AGCAGCAGCACATGTGGACA+TGG | 0.572941 | 4.1:-50771997 | MS.gene51332:intron |
| GTAACCACCTTCGAGGTAGT+TGG | 0.576202 | 4.1:+50781366 | None:intergenic |
| AGCAATTAAGTATGGTGGCA+GGG | 0.576248 | 4.1:-50765939 | MS.gene51332:CDS |
| TTGAGATGGTGATGAATGAA+AGG | 0.577954 | 4.1:+50769740 | None:intergenic |
| TGTGAATCTTCTGCTGATGG+TGG | 0.578930 | 4.1:-50769395 | MS.gene51332:CDS |
| TCGGTTGAAACAGCAAGAAG+TGG | 0.579611 | 4.1:-50772740 | MS.gene51332:CDS |
| GGATGAGAGTGTTCAAGAAG+TGG | 0.580126 | 4.1:-50774034 | MS.gene51332:CDS |
| ACTGATCTCGTTCATGGACA+AGG | 0.581009 | 4.1:+50764881 | None:intergenic |
| TCAGTTAAACAAAGAGGATG+GGG | 0.582580 | 4.1:-50773977 | MS.gene51332:CDS |
| GAACCGAAAATCCCAACTAT+CGG | 0.583849 | 4.1:-50775374 | MS.gene51332:intron |
| CACAACGGTAACCACCTTCG+AGG | 0.583878 | 4.1:+50781359 | None:intergenic |
| GCCACACGAAACTCAGACCC+AGG | 0.583957 | 4.1:+50765971 | None:intergenic |
| ATGAGAGTCTTTACATCTGT+AGG | 0.586791 | 4.1:-50764035 | MS.gene51332:CDS |
| TGAGCTGCCATGCTGGTTGA+CGG | 0.590544 | 4.1:+50772317 | None:intergenic |
| TCGTCTGCTCCTGCATCAGG+AGG | 0.591008 | 4.1:+50769500 | None:intergenic |
| GTTGGAAAGGGACATCTACA+AGG | 0.592838 | 4.1:-50764335 | MS.gene51332:CDS |
| GGAGAGCTTATCAGATAGCA+TGG | 0.593499 | 4.1:-50769576 | MS.gene51332:CDS |
| TATGGTGGCAGGGTGATACT+TGG | 0.597732 | 4.1:-50765929 | MS.gene51332:CDS |
| GCCGCTGCCAACTACCTCGA+AGG | 0.598155 | 4.1:-50781373 | MS.gene51332:CDS |
| ATTTAGGTAATAATGACTTG+AGG | 0.602441 | 4.1:-50777126 | MS.gene51332:CDS |
| TGGAACTGCTCATGTTTCTG+AGG | 0.605070 | 4.1:-50769351 | MS.gene51332:intron |
| GATCTCCGAACCTTTGAAGT+CGG | 0.606184 | 4.1:+50773601 | None:intergenic |
| CATAGAAACATGCCTTGGCA+AGG | 0.609074 | 4.1:+50766144 | None:intergenic |
| GCATGCAGAACGAGATTCTG+TGG | 0.609093 | 4.1:-50773433 | MS.gene51332:CDS |
| CGGTTGAAACAGCAAGAAGT+GGG | 0.611761 | 4.1:-50772739 | MS.gene51332:CDS |
| TTATTAAGATCATCAGAGCT+GGG | 0.614482 | 4.1:+50765085 | None:intergenic |
| ACAGATTGCCAGTAAGCTTG+AGG | 0.615590 | 4.1:-50765999 | MS.gene51332:intron |
| AAATGTATCCAACCTGTACA+GGG | 0.617068 | 4.1:+50765900 | None:intergenic |
| AAACAGCAAGAAGTGGGAAG+CGG | 0.617248 | 4.1:-50772733 | MS.gene51332:CDS |
| CGCTTCCTGAGGAGTTATCG+AGG | 0.618132 | 4.1:-50769436 | MS.gene51332:CDS |
| AGATTACATTGAAGAGAACA+TGG | 0.619490 | 4.1:-50765174 | MS.gene51332:CDS |
| AAGAGTATTTCTAGAACCAG+AGG | 0.619782 | 4.1:+50775542 | None:intergenic |
| AGGGTGGTTGAGAAGAATTG+GGG | 0.623289 | 4.1:+50769701 | None:intergenic |
| GAATGAAAGGCGCGAGTTGG+GGG | 0.623865 | 4.1:+50769753 | None:intergenic |
| TACTTCAACTCCATTGTCAG+GGG | 0.624441 | 4.1:+50772661 | None:intergenic |
| GGAATGGCATTACAGGTGAA+GGG | 0.625351 | 4.1:-50772215 | MS.gene51332:CDS |
| TGAAGTGCCGTCAACCAGCA+TGG | 0.625663 | 4.1:-50772324 | MS.gene51332:CDS |
| TGGTTCTAGAAATACTCTTG+AGG | 0.626257 | 4.1:-50775538 | MS.gene51332:CDS |
| ACAATGGAGTTGAAGTAACT+AGG | 0.628231 | 4.1:-50772655 | MS.gene51332:CDS |
| GAAGAAGCAATTAAGTATGG+TGG | 0.634407 | 4.1:-50765944 | MS.gene51332:CDS |
| GGCAGCTCATGTTGTCGATG+AGG | 0.635035 | 4.1:-50772303 | MS.gene51332:CDS |
| TGTCAGTTTACTGAAACCAG+AGG | 0.635790 | 4.1:-50767361 | MS.gene51332:intron |
| TGTGGATGGTCTTGATGAAG+AGG | 0.636361 | 4.1:-50772021 | MS.gene51332:CDS |
| AGAGGCAGCAGCAGCACATG+TGG | 0.636794 | 4.1:-50772003 | MS.gene51332:CDS |
| GATGTGAATGAAGTCTTCGA+CGG | 0.637965 | 4.1:+50769613 | None:intergenic |
| TGAGGCTCAGTTAAACAAAG+AGG | 0.640733 | 4.1:-50773983 | MS.gene51332:CDS |
| TACATCTGTAGGTGTTGGCG+TGG | 0.642917 | 4.1:-50764024 | MS.gene51332:CDS |
| GGAGAAGTAACGCTGAACAC+TGG | 0.644160 | 4.1:+50779861 | None:intergenic |
| AGTTGCAAGATGAACTGAAG+AGG | 0.645881 | 4.1:-50773760 | MS.gene51332:intron |
| TAACCTGTGAATAATTGCTG+CGG | 0.646818 | 4.1:+50772159 | None:intergenic |
| CCATTGGAGTTAGGGTGCAG+CGG | 0.647068 | 4.1:+50769678 | None:intergenic |
| AAGTGAGAGCAGATCAGTTG+TGG | 0.647491 | 4.1:-50764363 | MS.gene51332:CDS |
| CTGATCTCGTTCATGGACAA+GGG | 0.650040 | 4.1:+50764882 | None:intergenic |
| AACGAGAATGTGGATGTGGA+TGG | 0.650385 | 4.1:-50772035 | MS.gene51332:CDS |
| ATCGATTGACAAGAGTTGTG+AGG | 0.651602 | 4.1:-50772687 | MS.gene51332:CDS |
| AGACGACGCCGTCGTCGCAG+CGG | 0.651737 | 4.1:-50769483 | MS.gene51332:CDS |
| TCACCGGCTCGAGAGGCAAG+AGG | 0.653046 | 4.1:-50777064 | MS.gene51332:CDS |
| TTATGCGCTCTTTATCAGAA+CGG | 0.655430 | 4.1:-50779627 | MS.gene51332:CDS |
| TGAGGGATAAACTTGACAGA+AGG | 0.656295 | 4.1:-50777108 | MS.gene51332:CDS |
| GCTGCCAACTACCTCGAAGG+TGG | 0.659057 | 4.1:-50781370 | MS.gene51332:CDS |
| CGGCTCGAGAGGCAAGAGGT+CGG | 0.660465 | 4.1:-50777060 | MS.gene51332:CDS |
| AACACTGGTACAGCTACTCG+TGG | 0.662851 | 4.1:+50779876 | None:intergenic |
| GGTGCAGTGACAGAAGACAT+AGG | 0.669837 | 4.1:-50775659 | MS.gene51332:intron |
| AGGAGAAAACAGGATATCAG+TGG | 0.680364 | 4.1:-50775639 | MS.gene51332:CDS |
| ACAGAAAGTTACGCTTCCTG+AGG | 0.681688 | 4.1:-50769447 | MS.gene51332:CDS |
| GATTGACAAGAGTTGTGAGG+AGG | 0.689653 | 4.1:-50772684 | MS.gene51332:CDS |
| CATAATTTGGAACAGAACAG+CGG | 0.694176 | 4.1:-50773477 | MS.gene51332:CDS |
| ACCTGTGAATAATTGCTGCG+GGG | 0.699773 | 4.1:+50772161 | None:intergenic |
| GCTGCGGGGAATCAAATCTG+GGG | 0.713601 | 4.1:+50772175 | None:intergenic |
| GGGTGGTTGAGAAGAATTGG+GGG | 0.720249 | 4.1:+50769702 | None:intergenic |
| TCTGTGGAAGAGTTACAACA+AGG | 0.739554 | 4.1:-50773417 | MS.gene51332:intron |
| ACCTCCGATGATAAACACAA+CGG | 0.740253 | 4.1:+50781344 | None:intergenic |
| TTGCAGAATATAGTCCACTG+AGG | 0.772392 | 4.1:-50776616 | MS.gene51332:intron |
| TGTATCCAACCTGTACAGGG+CGG | 0.779909 | 4.1:+50765903 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 50763977 | 50781768 | 50763977 | ID=MS.gene51332 |
| chr4.1 | mRNA | 50763977 | 50781768 | 50763977 | ID=MS.gene51332.t1;Parent=MS.gene51332 |
| chr4.1 | exon | 50781766 | 50781768 | 50781766 | ID=MS.gene51332.t1.exon1;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50781766 | 50781768 | 50781766 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50781346 | 50781437 | 50781346 | ID=MS.gene51332.t1.exon2;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50781346 | 50781437 | 50781346 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50781212 | 50781234 | 50781212 | ID=MS.gene51332.t1.exon3;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50781212 | 50781234 | 50781212 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50779821 | 50779906 | 50779821 | ID=MS.gene51332.t1.exon4;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50779821 | 50779906 | 50779821 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50779553 | 50779739 | 50779553 | ID=MS.gene51332.t1.exon5;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50779553 | 50779739 | 50779553 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50777047 | 50777160 | 50777047 | ID=MS.gene51332.t1.exon6;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50777047 | 50777160 | 50777047 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50776599 | 50776632 | 50776599 | ID=MS.gene51332.t1.exon7;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50776599 | 50776632 | 50776599 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50775533 | 50775674 | 50775533 | ID=MS.gene51332.t1.exon8;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50775533 | 50775674 | 50775533 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50775375 | 50775431 | 50775375 | ID=MS.gene51332.t1.exon9;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50775375 | 50775431 | 50775375 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50773967 | 50774064 | 50773967 | ID=MS.gene51332.t1.exon10;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50773967 | 50774064 | 50773967 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50773761 | 50773832 | 50773761 | ID=MS.gene51332.t1.exon11;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50773761 | 50773832 | 50773761 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50773418 | 50773632 | 50773418 | ID=MS.gene51332.t1.exon12;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50773418 | 50773632 | 50773418 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50772583 | 50772767 | 50772583 | ID=MS.gene51332.t1.exon13;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50772583 | 50772767 | 50772583 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50772163 | 50772363 | 50772163 | ID=MS.gene51332.t1.exon14;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50772163 | 50772363 | 50772163 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50771998 | 50772069 | 50771998 | ID=MS.gene51332.t1.exon15;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50771998 | 50772069 | 50771998 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50769352 | 50769807 | 50769352 | ID=MS.gene51332.t1.exon16;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50769352 | 50769807 | 50769352 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50767362 | 50767409 | 50767362 | ID=MS.gene51332.t1.exon17;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50767362 | 50767409 | 50767362 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50767192 | 50767251 | 50767192 | ID=MS.gene51332.t1.exon18;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50767192 | 50767251 | 50767192 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50766157 | 50766240 | 50766157 | ID=MS.gene51332.t1.exon19;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50766157 | 50766240 | 50766157 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50765913 | 50766017 | 50765913 | ID=MS.gene51332.t1.exon20;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50765913 | 50766017 | 50765913 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50765081 | 50765194 | 50765081 | ID=MS.gene51332.t1.exon21;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50765081 | 50765194 | 50765081 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50764883 | 50764983 | 50764883 | ID=MS.gene51332.t1.exon22;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50764883 | 50764983 | 50764883 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50764304 | 50764415 | 50764304 | ID=MS.gene51332.t1.exon23;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50764304 | 50764415 | 50764304 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| chr4.1 | exon | 50763977 | 50764105 | 50763977 | ID=MS.gene51332.t1.exon24;Parent=MS.gene51332.t1 |
| chr4.1 | CDS | 50763977 | 50764105 | 50763977 | ID=cds.MS.gene51332.t1;Parent=MS.gene51332.t1 |
| Gene Sequence |
| Protein sequence |
