AlfalfaGEDB | MS.gene51374

M. sativa cultivar XinJiangDaYe / MS.gene51374

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51374.t1	XP_024640623.1	94.2	224	13	0	1	224	1	224	7.90E-116	427.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51374.t1	Q9SZL8	27.5	207	132	6	30	224	59	259	2.6e-14	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51374.t1	A0A072TDR2	94.9	158	8	0	20	177	1	158	5.9e-81	310.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene51374.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51374.t1	MTR_0853s0010	94.937	158	8	0	20	177	1	158	5.74e-112	323
MS.gene51374.t1	MTR_1g019850	60.432	139	48	2	41	179	67	198	1.43e-52	174
MS.gene51374.t1	MTR_0734s0010	50.000	136	62	3	228	358	52	186	8.74e-33	121
MS.gene51374.t1	MTR_2g024230	55.224	67	30	0	37	103	83	149	4.36e-20	86.7
MS.gene51374.t1	MTR_1g033820	53.571	56	26	0	32	87	15	70	1.33e-15	72.0
MS.gene51374.t1	MTR_6g048540	43.299	97	49	3	35	128	19	112	5.02e-13	68.6
MS.gene51374.t1	MTR_1g013060	26.471	204	127	7	31	219	3	198	6.81e-11	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51374.t1	AT4G38180	28.061	196	123	7	41	224	70	259	1.71e-15	78.6

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Find 39 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTAATGATAGTCCATT+TGG	0.314496	4.1:-51799397	None:intergenic
AACATCAAGAACTGATTGTA+AGG	0.444776	4.1:+51799341	MS.gene51374:CDS
AACTCAGCTTCTTCAGTTGT+TGG	0.313522	4.1:-51801046	None:intergenic
AATGCTCGAGTTTCTCAACC+TGG	0.593762	4.1:+51801118	MS.gene51374:CDS
AATGTAATGATAGTCCATTT+GGG	0.500833	4.1:-51799396	None:intergenic
AATGTTTAGCAATGAAGGTT+CGG	0.437737	4.1:+51799557	MS.gene51374:CDS
ACAAACTAAAGGAAGACAAA+AGG	0.527619	4.1:+51801093	MS.gene51374:CDS
AGAAGAACATGTCAAATATC+TGG	0.310486	4.1:+51801190	MS.gene51374:CDS
AGAAGATAGTCATAACATGG+AGG	0.748276	4.1:+51798906	MS.gene51374:CDS
AGTTGAACAGTTTGATCAAG+AGG	0.557965	4.1:+51799509	MS.gene51374:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCAAGAACTGATTGTA+AGG	+	chr4.1:51799341-51799360	MS.gene51374:CDS	30.0%
AAGGACAAAATCGAGAAAAA+TGG	+	chr4.1:51800566-51800585	MS.gene51374:intron	30.0%
AATGTTTAGCAATGAAGGTT+CGG	+	chr4.1:51799557-51799576	MS.gene51374:CDS	30.0%
ACAAACTAAAGGAAGACAAA+AGG	+	chr4.1:51801093-51801112	MS.gene51374:CDS	30.0%
AGAAGAACATGTCAAATATC+TGG	+	chr4.1:51801190-51801209	MS.gene51374:CDS	30.0%
AGAGTCATATACTGTTTATG+TGG	+	chr4.1:51800631-51800650	MS.gene51374:intron	30.0%
AGGACAAAATCGAGAAAAAT+GGG	+	chr4.1:51800567-51800586	MS.gene51374:intron	30.0%
ATAAAGTTGACAACCACATT+TGG	-	chr4.1:51800675-51800694	None:intergenic	30.0%
ATATTTGTTTGCTCTAATGC+TGG	+	chr4.1:51799249-51799268	MS.gene51374:CDS	30.0%
ATTATGCAGACATATCTTGA+TGG	+	chr4.1:51800709-51800728	MS.gene51374:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	51798880	51801282	51798880	ID=MS.gene51374
chr4.1	mRNA	51798880	51801282	51798880	ID=MS.gene51374.t1;Parent=MS.gene51374
chr4.1	exon	51798880	51798936	51798880	ID=MS.gene51374.t1.exon1;Parent=MS.gene51374.t1
chr4.1	CDS	51798880	51798936	51798880	ID=cds.MS.gene51374.t1;Parent=MS.gene51374.t1
chr4.1	exon	51799063	51799669	51799063	ID=MS.gene51374.t1.exon2;Parent=MS.gene51374.t1
chr4.1	CDS	51799063	51799669	51799063	ID=cds.MS.gene51374.t1;Parent=MS.gene51374.t1
chr4.1	exon	51800840	51801282	51800840	ID=MS.gene51374.t1.exon3;Parent=MS.gene51374.t1
chr4.1	CDS	51800840	51801282	51800840	ID=cds.MS.gene51374.t1;Parent=MS.gene51374.t1

Gene Sequence

>MS.gene51374

ATGGAAAGTCCAAAATCAAATGCTGAAGAAGATAGTCATAACATGGAGGACATAGAGGTATTATGAATTAATTCTTCAATTACATTTGCTTTATGTCTTTTATATATCTCTTAACAAAATCATATGTATTTCATAGAATTTTAATTTTTAAGACTTTACGATGTTTTTTATTTTAATATATAGTGCAATCAAAATTCTCAAGAAAGAAGAAACCCTGAGCATGACTTAGATGTTCATGAGCATCAAAATATTGATCCTTGTATTGATATGGAATTTGACTCTCTTGATGATGTTAAAAATTTATACACATCATTTGCTAAAAAAGAAGGTTTTGGAATTCGTACACGTTCAACTAAGACAAATTTGTGCATATTTGTTTGCTCTAATGCTGGCCAACATGTTGATAGTAATGACAAAGAAGAAAGCAATACAATCACAGTAAAAAGGAAAAAAAGATGTTCAACATCAAGAACTGATTGTAAGGCAACACTTGTAGTTTCAAAAGCAAAAATGAGGCCCAAATGGACTATCATTACATTTAACAATACTCATAATCATGCAATGGTTAGCCCCAAGAGTATAAACTATCTTAGGTGCCATAAAAAAATGGGTGGGGCAGCAGAGAATCTAGTTGAACAGTTTGATCAAGAGGGCTTGCCTACCGGAAAAGTCGCTACAATGTTTAGCAATGAAGGTTCGGCTTTCTCTGATAGAGATTGTTGGAATCATCTTAGAGATCTCCGATCTAAAAAACTGGATGTTGGAGATGCTCAAGCAGTGTTAAACTTTTGTAAGCAAAAACAAGCAGAGAACCCAAATTTCTTTTATGCAATACAAGTTGATAATCATGATAGAATGATTAATTTTTTTTGGGTTGATGCAAGGTCGAGGTTGGCCTATAATTATTTTGGAGATGTTGTTACATTTGATACAACATATAAGAAGAACAAGTATCTTATGCCATTTGCGCCATTTACTGGATTGAATCATCATCATCAGTCCATTTTATTCGGTTGTGCTTTGTTGCAAGATGAAACGGAGAAGTCTTTTACATGGTTGTTTGAAACTTGGCTAATGGCAATGGGTGGAAAGAGTCCTGTTTCAATAATTACAGATCAAGATAAGGCGATGTGCGGAGCAATATCTAAGGTATTTCCTAATACTCGACATCGTTTATGTTTGTGGCACATTAGAAAAAAGTTTGCCGAGAAGCTTTCACACATATACCATAAAAGTTCAAATTTCAAGCGTGAGCTGAAAAAGTGTATACGTGAATCATTATGCATTGAAGATTTTGAGGAAGATTGGCACCAAATAATGGTTAAATATGATTTGGAAAAAAATGAATGGCTCCAAGGTTTGTATGAAATTAGAGAGTCATGGATTCCTATTTATAATATGAAGACCTTTTTTGCTGGGATGAATACAACACAGAGGAGTGAGAGCATAAATGCATTTTTTGATTCTTTTGTTGATTCTTCAACCACACTGCGAGATTTCGTAGTAAAGTTTGACAAAGCAGTGGATAGTCGCTACGAGAAAGAAAAAAAAGAAGATTTTGAGTCGCGACATCGATCACGTCTCTTAAGTGTTAGATCAAAAATTGAAAAGCAAGCGGCAACTATTTATACTAGAAACATCTTTAAGAAGTTTCAGGACGAGCTTGCAAAGGTTAGCCACTTCATCAAGGACAAAATCGAGAAAAATGGGTCTCAATATACATATAAAGTAACTAATTGTGATAATACTCGAGAGTCATATACTGTTTATGTGGACCTTGATACAAGGGCTGCCAAATGTGGTTGTCAACTTTATGAATTTATGGGCATATTATGCAGACATATCTTGATGGTTTTTCAATCAAAAAATATTATTGAAATTCCAAATGAATATATTTTAAAGCGTTGGACAAAGGATGCTAATATTGGCATTATATGTGGTATTAATGAAAACAATTCAGTACGTGAGAGTACTCAATCAGCAACTCTTCGAAGTATGCATGTGCTTAGCCAAGCAAGTTTATTATCTGACCTTGCAAAATCTGAGAACATATATGAGTTTATATCTCCAGAGCTTGAAAAGATCATCAAAAAGGCCATAATGATGGACTCCGAAAGACAAACTAGAGTTTCAGAAACAGCGTTTGAAGATGAGAGCATGTGTGATCCAACAACTGAAGAAGCTGAGTTCAATATTCAAGATCCGATAATGGCACAAACTAAAGGAAGACAAAAGGACAATGCTCGAGTTTCTCAACCTGGAAGAATCAAAAGCGGTCTGGAGTTATCAATGAATCGTATCTCAGCAAAAAGAAGAACATGTCAAATATCTGGAGAAGAAGGTCATAATCGACGAAGTTGCAAGCAAAAAATAAGCGACGAAGAAACTATTTTCTCTCGTTAA

Protein sequence

>MS.gene51374.t1

MESPKSNAEEDSHNMEDIECNQNSQERRNPEHDLDVHEHQNIDPCIDMEFDSLDDVKNLYTSFAKKEGFGIRTRSTKTNLCIFVCSNAGQHVDSNDKEESNTITVKRKKRCSTSRTDCKATLVVSKAKMRPKWTIITFNNTHNHAMVSPKSINYLRCHKKMGGAAENLVEQFDQEGLPTGKVATMFSNEGSAFSDRDCWNHLRDLRSKKLDVGDAQAVLNFLRESTQSATLRSMHVLSQASLLSDLAKSENIYEFISPELEKIIKKAIMMDSERQTRVSETAFEDESMCDPTTEEAEFNIQDPIMAQTKGRQKDNARVSQPGRIKSGLELSMNRISAKRRTCQISGEEGHNRRSCKQKISDEETIFSR