Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51374.t1 | XP_024640623.1 | 94.2 | 224 | 13 | 0 | 1 | 224 | 1 | 224 | 7.90E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51374.t1 | Q9SZL8 | 27.5 | 207 | 132 | 6 | 30 | 224 | 59 | 259 | 2.6e-14 | 81.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51374.t1 | A0A072TDR2 | 94.9 | 158 | 8 | 0 | 20 | 177 | 1 | 158 | 5.9e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51374.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51374.t1 | MTR_0853s0010 | 94.937 | 158 | 8 | 0 | 20 | 177 | 1 | 158 | 5.74e-112 | 323 |
| MS.gene51374.t1 | MTR_1g019850 | 60.432 | 139 | 48 | 2 | 41 | 179 | 67 | 198 | 1.43e-52 | 174 |
| MS.gene51374.t1 | MTR_0734s0010 | 50.000 | 136 | 62 | 3 | 228 | 358 | 52 | 186 | 8.74e-33 | 121 |
| MS.gene51374.t1 | MTR_2g024230 | 55.224 | 67 | 30 | 0 | 37 | 103 | 83 | 149 | 4.36e-20 | 86.7 |
| MS.gene51374.t1 | MTR_1g033820 | 53.571 | 56 | 26 | 0 | 32 | 87 | 15 | 70 | 1.33e-15 | 72.0 |
| MS.gene51374.t1 | MTR_6g048540 | 43.299 | 97 | 49 | 3 | 35 | 128 | 19 | 112 | 5.02e-13 | 68.6 |
| MS.gene51374.t1 | MTR_1g013060 | 26.471 | 204 | 127 | 7 | 31 | 219 | 3 | 198 | 6.81e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51374.t1 | AT4G38180 | 28.061 | 196 | 123 | 7 | 41 | 224 | 70 | 259 | 1.71e-15 | 78.6 |
Find 39 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCAGCATTTGATTT+TGG | 0.146038 | 4.1:-51798889 | None:intergenic |
| CCTTTAGTTTGTGCCATTAT+CGG | 0.234963 | 4.1:-51801082 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 4.1:+51799128 | MS.gene51374:CDS |
| AGAAGAACATGTCAAATATC+TGG | 0.310486 | 4.1:+51801190 | MS.gene51374:CDS |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 4.1:+51799304 | MS.gene51374:CDS |
| AACTCAGCTTCTTCAGTTGT+TGG | 0.313522 | 4.1:-51801046 | None:intergenic |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 4.1:+51799451 | MS.gene51374:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 4.1:-51799397 | None:intergenic |
| TCTTTCGGAGTCCATCATTA+TGG | 0.327337 | 4.1:-51800975 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 4.1:-51799451 | None:intergenic |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 4.1:-51799450 | None:intergenic |
| GCTTGAAAAGATCATCAAAA+AGG | 0.372423 | 4.1:+51800952 | MS.gene51374:CDS |
| TGAAACTCTAGTTTGTCTTT+CGG | 0.388167 | 4.1:-51800990 | None:intergenic |
| AATGTTTAGCAATGAAGGTT+CGG | 0.437737 | 4.1:+51799557 | MS.gene51374:CDS |
| GCTACAATGTTTAGCAATGA+AGG | 0.444472 | 4.1:+51799552 | MS.gene51374:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 4.1:+51799341 | MS.gene51374:CDS |
| CTTTCTCTGATAGAGATTGT+TGG | 0.446604 | 4.1:+51799580 | MS.gene51374:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 4.1:+51799249 | MS.gene51374:CDS |
| CAATATTCAAGATCCGATAA+TGG | 0.465564 | 4.1:+51801069 | MS.gene51374:CDS |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 4.1:-51799093 | None:intergenic |
| TGGAAGAATCAAAAGCGGTC+TGG | 0.495399 | 4.1:+51801138 | MS.gene51374:CDS |
| GATCAAGAGGGCTTGCCTAC+CGG | 0.495549 | 4.1:+51799522 | MS.gene51374:CDS |
| CCGATAATGGCACAAACTAA+AGG | 0.499113 | 4.1:+51801082 | MS.gene51374:CDS |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 4.1:-51799396 | None:intergenic |
| TGTCAAATATCTGGAGAAGA+AGG | 0.509005 | 4.1:+51801199 | MS.gene51374:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 4.1:-51800889 | None:intergenic |
| ACAAACTAAAGGAAGACAAA+AGG | 0.527619 | 4.1:+51801093 | MS.gene51374:CDS |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 4.1:-51799272 | None:intergenic |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 4.1:+51798915 | MS.gene51374:CDS |
| AGTTGAACAGTTTGATCAAG+AGG | 0.557965 | 4.1:+51799509 | MS.gene51374:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 4.1:-51799449 | None:intergenic |
| GTTGAACAGTTTGATCAAGA+GGG | 0.578599 | 4.1:+51799510 | MS.gene51374:CDS |
| AATGCTCGAGTTTCTCAACC+TGG | 0.593762 | 4.1:+51801118 | MS.gene51374:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 4.1:+51799422 | MS.gene51374:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 4.1:-51799135 | None:intergenic |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 4.1:-51799092 | None:intergenic |
| CAACCTGGAAGAATCAAAAG+CGG | 0.677260 | 4.1:+51801133 | MS.gene51374:CDS |
| TGAAGAAGATAGTCATAACA+TGG | 0.681121 | 4.1:+51798903 | MS.gene51374:CDS |
| AGAAGATAGTCATAACATGG+AGG | 0.748276 | 4.1:+51798906 | MS.gene51374:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr4.1:51799730-51799749 | MS.gene51374:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr4.1:51799731-51799750 | MS.gene51374:intron | 10.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr4.1:51800193-51800212 | MS.gene51374:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr4.1:51800193-51800212 | None:intergenic | 15.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr4.1:51799778-51799797 | None:intergenic | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr4.1:51800269-51800288 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr4.1:51799983-51800002 | MS.gene51374:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr4.1:51799695-51799714 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr4.1:51799696-51799715 | None:intergenic | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr4.1:51800683-51800702 | MS.gene51374:intron | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr4.1:51800682-51800701 | MS.gene51374:intron | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr4.1:51800765-51800784 | MS.gene51374:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr4.1:51800207-51800226 | MS.gene51374:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr4.1:51800764-51800783 | None:intergenic | 20.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | chr4.1:51799400-51799419 | None:intergenic | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | chr4.1:51799399-51799418 | None:intergenic | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | chr4.1:51800475-51800494 | MS.gene51374:intron | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr4.1:51799453-51799472 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr4.1:51799452-51799471 | None:intergenic | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr4.1:51799373-51799392 | MS.gene51374:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr4.1:51799138-51799157 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | chr4.1:51799978-51799997 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr4.1:51800514-51800533 | MS.gene51374:intron | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | chr4.1:51799186-51799205 | MS.gene51374:CDS | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | chr4.1:51800157-51800176 | MS.gene51374:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr4.1:51800109-51800128 | None:intergenic | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr4.1:51799128-51799147 | MS.gene51374:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr4.1:51799192-51799211 | MS.gene51374:CDS | 25.0% |
| AACATCAAGAACTGATTGTA+AGG | + | chr4.1:51799341-51799360 | MS.gene51374:CDS | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr4.1:51800566-51800585 | MS.gene51374:intron | 30.0% | |
| AATGTTTAGCAATGAAGGTT+CGG | + | chr4.1:51799557-51799576 | MS.gene51374:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | + | chr4.1:51801093-51801112 | MS.gene51374:CDS | 30.0% | |
| AGAAGAACATGTCAAATATC+TGG | + | chr4.1:51801190-51801209 | MS.gene51374:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr4.1:51800631-51800650 | MS.gene51374:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr4.1:51800567-51800586 | MS.gene51374:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr4.1:51800675-51800694 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr4.1:51799249-51799268 | MS.gene51374:CDS | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr4.1:51800709-51800728 | MS.gene51374:intron | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr4.1:51799422-51799441 | MS.gene51374:CDS | 30.0% | |
| CAATATTCAAGATCCGATAA+TGG | + | chr4.1:51801069-51801088 | MS.gene51374:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr4.1:51799454-51799473 | None:intergenic | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | - | chr4.1:51800235-51800254 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | chr4.1:51799304-51799323 | MS.gene51374:CDS | 30.0% | |
| GCTAATATTGGCATTATATG+TGG | + | chr4.1:51800797-51800816 | MS.gene51374:intron | 30.0% | |
| GCTTGAAAAGATCATCAAAA+AGG | + | chr4.1:51800952-51800971 | MS.gene51374:CDS | 30.0% | |
| TGAAGAAGATAGTCATAACA+TGG | + | chr4.1:51798903-51798922 | MS.gene51374:CDS | 30.0% | |
| TGATGATTCAATCCAGTAAA+TGG | - | chr4.1:51799852-51799871 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr4.1:51800240-51800259 | MS.gene51374:intron | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr4.1:51799275-51799294 | None:intergenic | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr4.1:51800913-51800932 | None:intergenic | 30.0% |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr4.1:51799870-51799889 | MS.gene51374:intron | 30.0% |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr4.1:51799451-51799470 | MS.gene51374:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr4.1:51799468-51799487 | MS.gene51374:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr4.1:51799467-51799486 | MS.gene51374:CDS | 30.0% |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | - | chr4.1:51800993-51801012 | None:intergenic | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | chr4.1:51799928-51799947 | MS.gene51374:intron | 30.0% |
| !! | TCTTCTTCAGCATTTGATTT+TGG | - | chr4.1:51798892-51798911 | None:intergenic | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | + | chr4.1:51800165-51800184 | MS.gene51374:intron | 30.0% |
| !!! | AATATGAAGACCTTTTTTGC+TGG | + | chr4.1:51800275-51800294 | MS.gene51374:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr4.1:51799768-51799787 | MS.gene51374:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | + | chr4.1:51800276-51800295 | MS.gene51374:intron | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr4.1:51799742-51799761 | MS.gene51374:intron | 30.0% |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | - | chr4.1:51799623-51799642 | None:intergenic | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr4.1:51800772-51800791 | MS.gene51374:intron | 30.0% |
| AGAAGATAGTCATAACATGG+AGG | + | chr4.1:51798906-51798925 | MS.gene51374:CDS | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | + | chr4.1:51799614-51799633 | MS.gene51374:CDS | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr4.1:51800382-51800401 | MS.gene51374:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr4.1:51799509-51799528 | MS.gene51374:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr4.1:51799883-51799902 | None:intergenic | 35.0% | |
| CATAAACGATGTCGAGTATT+AGG | - | chr4.1:51800038-51800057 | None:intergenic | 35.0% | |
| CATCAAAAAGGCCATAATGA+TGG | + | chr4.1:51800964-51800983 | MS.gene51374:CDS | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | + | chr4.1:51799621-51799640 | MS.gene51374:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | chr4.1:51799580-51799599 | MS.gene51374:CDS | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr4.1:51800215-51800234 | MS.gene51374:intron | 35.0% | |
| GCTACAATGTTTAGCAATGA+AGG | + | chr4.1:51799552-51799571 | MS.gene51374:CDS | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | chr4.1:51800087-51800106 | None:intergenic | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr4.1:51799510-51799529 | MS.gene51374:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr4.1:51800785-51800804 | MS.gene51374:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | - | chr4.1:51800288-51800307 | None:intergenic | 35.0% | |
| TGTCAAATATCTGGAGAAGA+AGG | + | chr4.1:51801199-51801218 | MS.gene51374:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr4.1:51800646-51800665 | MS.gene51374:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr4.1:51800645-51800664 | MS.gene51374:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | chr4.1:51799544-51799563 | None:intergenic | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | chr4.1:51799913-51799932 | MS.gene51374:intron | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | chr4.1:51800892-51800911 | None:intergenic | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | chr4.1:51799935-51799954 | MS.gene51374:intron | 35.0% |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | chr4.1:51799896-51799915 | MS.gene51374:intron | 35.0% |
| !! | CCTTTAGTTTGTGCCATTAT+CGG | - | chr4.1:51801085-51801104 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | - | chr4.1:51800950-51800969 | None:intergenic | 35.0% |
| AACTCAGCTTCTTCAGTTGT+TGG | - | chr4.1:51801049-51801068 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | chr4.1:51799382-51799401 | MS.gene51374:CDS | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr4.1:51799843-51799862 | None:intergenic | 40.0% | |
| CAACCTGGAAGAATCAAAAG+CGG | + | chr4.1:51801133-51801152 | MS.gene51374:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | chr4.1:51800042-51800061 | MS.gene51374:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | chr4.1:51799942-51799961 | MS.gene51374:intron | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | chr4.1:51799095-51799114 | None:intergenic | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | + | chr4.1:51800178-51800197 | MS.gene51374:intron | 40.0% | |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr4.1:51799473-51799492 | MS.gene51374:CDS | 40.0% | |
| TCATAACATGGAGGACATAG+AGG | + | chr4.1:51798915-51798934 | MS.gene51374:CDS | 40.0% | |
| TCTTTCGGAGTCCATCATTA+TGG | - | chr4.1:51800978-51800997 | None:intergenic | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | chr4.1:51799941-51799960 | MS.gene51374:intron | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | chr4.1:51799096-51799115 | None:intergenic | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr4.1:51800547-51800566 | MS.gene51374:intron | 40.0% |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr4.1:51799471-51799490 | MS.gene51374:CDS | 40.0% |
| ! | CCGATAATGGCACAAACTAA+AGG | + | chr4.1:51801082-51801101 | MS.gene51374:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr4.1:51800559-51800578 | None:intergenic | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr4.1:51799472-51799491 | MS.gene51374:CDS | 40.0% |
| AATGCTCGAGTTTCTCAACC+TGG | + | chr4.1:51801118-51801137 | MS.gene51374:CDS | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr4.1:51800658-51800677 | None:intergenic | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | chr4.1:51800294-51800313 | MS.gene51374:intron | 45.0% | |
| GATCAAGATAAGGCGATGTG+CGG | + | chr4.1:51799993-51800012 | MS.gene51374:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | chr4.1:51800007-51800026 | MS.gene51374:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr4.1:51800366-51800385 | None:intergenic | 45.0% | |
| TGGAAGAATCAAAAGCGGTC+TGG | + | chr4.1:51801138-51801157 | MS.gene51374:CDS | 45.0% | |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr4.1:51799837-51799856 | MS.gene51374:intron | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | chr4.1:51799540-51799559 | None:intergenic | 45.0% |
| !! | AGACCGCTTTTGATTCTTCC+AGG | - | chr4.1:51801139-51801158 | None:intergenic | 45.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr4.1:51799479-51799498 | None:intergenic | 45.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | chr4.1:51799945-51799964 | MS.gene51374:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr4.1:51800659-51800678 | MS.gene51374:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr4.1:51800529-51800548 | MS.gene51374:intron | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr4.1:51799748-51799767 | MS.gene51374:intron | 50.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr4.1:51799522-51799541 | MS.gene51374:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr4.1:51799752-51799771 | MS.gene51374:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 51798880 | 51801282 | 51798880 | ID=MS.gene51374 |
| chr4.1 | mRNA | 51798880 | 51801282 | 51798880 | ID=MS.gene51374.t1;Parent=MS.gene51374 |
| chr4.1 | exon | 51798880 | 51798936 | 51798880 | ID=MS.gene51374.t1.exon1;Parent=MS.gene51374.t1 |
| chr4.1 | CDS | 51798880 | 51798936 | 51798880 | ID=cds.MS.gene51374.t1;Parent=MS.gene51374.t1 |
| chr4.1 | exon | 51799063 | 51799669 | 51799063 | ID=MS.gene51374.t1.exon2;Parent=MS.gene51374.t1 |
| chr4.1 | CDS | 51799063 | 51799669 | 51799063 | ID=cds.MS.gene51374.t1;Parent=MS.gene51374.t1 |
| chr4.1 | exon | 51800840 | 51801282 | 51800840 | ID=MS.gene51374.t1.exon3;Parent=MS.gene51374.t1 |
| chr4.1 | CDS | 51800840 | 51801282 | 51800840 | ID=cds.MS.gene51374.t1;Parent=MS.gene51374.t1 |
| Gene Sequence |
| Protein sequence |
