AlfalfaGEDB | MS.gene51505

M. sativa cultivar XinJiangDaYe / MS.gene51505

KEGG: K01079
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34 PF12710.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51505.t1	XP_003598991.1	71.3	188	12	1	18	163	1	188	4.60E-65	258.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51505.t1	O82796	67.4	138	45	0	26	163	49	186	3.7e-47	190.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51505.t1	G7IZA6	71.3	188	12	1	18	163	1	188	3.3e-65	258.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene51505.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51505.t1	MTR_3g025840	71.277	188	12	1	18	163	1	188	2.46e-88	268
MS.gene51505.t1	MTR_3g025840	91.892	37	3	0	164	200	84	120	1.74e-16	79.3
MS.gene51505.t1	MTR_4g098870	94.681	94	5	0	221	314	266	359	2.32e-51	179
MS.gene51505.t1	MTR_4g098870	94.681	94	5	0	221	314	286	379	2.51e-51	179
MS.gene51505.t1	MTR_4g098870	94.681	94	5	0	221	314	266	359	2.70e-51	179
MS.gene51505.t1	MTR_4g098870	94.681	94	5	0	221	314	286	379	3.47e-51	179
MS.gene51505.t1	MTR_4g098870	94.681	94	5	0	221	314	305	398	4.55e-51	179
MS.gene51505.t1	MTR_5g014040	63.918	97	34	1	221	317	228	323	1.72e-28	115
MS.gene51505.t1	MTR_5g014040	63.918	97	34	1	221	317	268	363	1.85e-28	115
MS.gene51505.t1	MTR_5g014040	65.957	94	31	1	221	314	268	360	1.26e-27	113

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51505.t1	AT1G18640	67.391	138	45	26	163	49	186	1.60e-59	194
MS.gene51505.t1	AT1G18640	85.714	35	5	166	200	84	118	4.18e-14	72.4
MS.gene51505.t1	AT1G18640	67.391	138	45	26	163	49	186	3.05e-59	192
MS.gene51505.t1	AT1G18640	85.714	35	5	166	200	84	118	4.70e-14	72.0
MS.gene51505.t1	AT5G44190	77.358	53	12	262	314	144	196	9.91e-21	92.0
MS.gene51505.t1	AT5G44190	77.358	53	12	262	314	144	196	1.07e-20	92.4
MS.gene51505.t1	AT4G18020	84.000	50	8	265	314	296	345	4.00e-20	91.7
MS.gene51505.t1	AT4G18020	84.000	50	8	265	314	296	345	4.00e-20	91.7
MS.gene51505.t1	AT4G18020	84.000	50	8	265	314	296	345	4.00e-20	91.7
MS.gene51505.t1	AT4G18020	84.000	50	8	265	314	296	345	4.00e-20	91.7

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Find 56 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCATGTATATCTGATCTC+AGG	0.425358	3.4:-2778892	MS.gene51505:CDS
AATATTGGATCTAATGAAAG+TGG	0.519493	3.4:-2777714	MS.gene51505:CDS
AATGTGAGATAAAAGCTATT+CGG	0.442989	3.4:-2777993	MS.gene51505:CDS
AATGTTGGATCTACGATCCA+TGG	0.500572	3.4:+2781172	None:intergenic
ACAACATTTGCAAATAAAGT+AGG	0.507830	3.4:-2778030	MS.gene51505:CDS
ACCACAGTTACCAAATGTGA+AGG	0.574268	3.4:-2778076	MS.gene51505:CDS
ACCTTCACATTTGGTAACTG+TGG	0.592713	3.4:+2778075	None:intergenic
AGAGTTAATCCAGAAACTAA+AGG	0.527183	3.4:-2778923	MS.gene51505:CDS
AGATTTGGTTCTGATTCAAA+CGG	0.510847	3.4:+2781058	None:intergenic
AGCACTGTGTGCATTGATGA+AGG	0.592504	3.4:-2778682	MS.gene51505:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGATGAATGGTGTAGA+GGG	-	chr3.4:2780343-2780362	MS.gene51505:intron	30.0%
AGAGTTAATCCAGAAACTAA+AGG	-	chr3.4:2779835-2779854	MS.gene51505:CDS	30.0%
AGTGAGAAGACAAAAAATGT+TGG	+	chr3.4:2777604-2777623	None:intergenic	30.0%
ATCAGAACCAAATCTCAAAA+AGG	-	chr3.4:2777708-2777727	MS.gene51505:CDS	30.0%
ATGAACATATTGTCATCTGA+AGG	-	chr3.4:2778684-2778703	MS.gene51505:CDS	30.0%
ATTAGATCCAATATTCGAGA+AGG	+	chr3.4:2781039-2781058	None:intergenic	30.0%
CAACATGACATGGAAAATAT+AGG	-	chr3.4:2780367-2780386	MS.gene51505:intron	30.0%
CAATGAACAGTGTGAAATAA+CGG	+	chr3.4:2780851-2780870	None:intergenic	30.0%
GAAAGCAGAGAAAATAAAGT+AGG	+	chr3.4:2779713-2779732	None:intergenic	30.0%
GCAAAGTTAGATTGTTCAAA+TGG	-	chr3.4:2778960-2778979	MS.gene51505:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	2777577	2781203	2777577	ID=MS.gene51505
chr3.4	mRNA	2777577	2781203	2777577	ID=MS.gene51505.t1;Parent=MS.gene51505
chr3.4	exon	2781050	2781203	2781050	ID=MS.gene51505.t1.exon1;Parent=MS.gene51505.t1
chr3.4	CDS	2781050	2781203	2781050	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1
chr3.4	exon	2779816	2779948	2779816	ID=MS.gene51505.t1.exon2;Parent=MS.gene51505.t1
chr3.4	CDS	2779816	2779948	2779816	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1
chr3.4	exon	2779622	2779729	2779622	ID=MS.gene51505.t1.exon3;Parent=MS.gene51505.t1
chr3.4	CDS	2779622	2779729	2779622	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1
chr3.4	exon	2778870	2778963	2778870	ID=MS.gene51505.t1.exon4;Parent=MS.gene51505.t1
chr3.4	CDS	2778870	2778963	2778870	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1
chr3.4	exon	2778622	2778734	2778622	ID=MS.gene51505.t1.exon5;Parent=MS.gene51505.t1
chr3.4	CDS	2778622	2778734	2778622	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1
chr3.4	exon	2778268	2778314	2778268	ID=MS.gene51505.t1.exon6;Parent=MS.gene51505.t1
chr3.4	CDS	2778268	2778314	2778268	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1
chr3.4	exon	2777981	2778132	2777981	ID=MS.gene51505.t1.exon7;Parent=MS.gene51505.t1
chr3.4	CDS	2777981	2778132	2777981	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1
chr3.4	exon	2777577	2777816	2777577	ID=MS.gene51505.t1.exon8;Parent=MS.gene51505.t1
chr3.4	CDS	2777577	2777816	2777577	ID=cds.MS.gene51505.t1;Parent=MS.gene51505.t1

Gene Sequence

>MS.gene51505

ATGGAGATTCCATGGATCGTAGATCCAACATTTTTTGTCTTCTCACTGTACATGGAAGCTTTGATCAGTTATGGGATCAACCCAGTTCGTGTAAATGTCATTACAAAGCAGCGATCTTGTTTTCCGTTTGAATCAGAACCAAATCTCAAAAAGGGTACGTTTGGATTTCAAATTGGAGTCGTGAACAAGAAGAAGAAGTTTTCTCCTTTGATTATGGCTGCTGCTACTGTTGGAAATTGACAAGTTGGTCATTTTGAGAATATGGTTCCTTCCAAAGGTTTATAAAATTCTTAAATTTTGATATTTTTTTTATTATCTATGGAATTATGAAGTGTCTTATTGAATTTTCATTCATTTTTGTTTTTAAATTATGTATTTAATTAAAAATGAATTTAACAATATAGTGTCCACTAGAAAGCGGATATAATTGTCCGTAAGACACAACTCAACGGACAATGTCAATATTGTTAGGCTAAACATGTTCACCCTGGTTTGAATTCAGACCTCGCAGTTGTGTGTCGGAGTTTAGGTGGCGTTTTCCACTTTGTTTGAACCCCAATTTGGAGAGGTGGTTTGGGTGGGGGAGTTAAGGAGTGGATTGATAAGGAGGTTGAGAGTTTAACGTCTGCTGTCATGTCGCGGTCTTTGATATTACGGAGAATCACAGTTAAATGTGGTTGATGAAGCCTCAATTGCGTAGCATTGCGGATTCAGTAACATAAAAAACTATTATGTTGAGGTCTAGATGGTCATGGACCTTTAATTAAAATCCTGTTGTCGACATGTTTTATTCATGCGTCTAATTATATTTTATTTTGATTTGTTGAATTTCATCATGGGGGTGTTTGGAGAAGTGGGACAAGATAGAGATATATGATTTAATATCTGTTTAATTGTGCATACTTATTATATTTCAGAAAACATTAATTCAATAGTCGTTAATTTAATTATATTTCACCGTTTTGATATATTTAATTTTACCATGGTAGATAGAGAAATATAATGGAATTTCTGCGTAAAATATACTCTGTGCAGTTATTAAATATTTTAAAATTGTGCTTTTGTTAACATCCATTGATACTAAAAATACACTTTTAAGCGATTAGAATGAACATATTGTCATCTGAAGGGGTTAGCAATCTATTTTAGCATTTTATATAATTTTTATGTGTCTGTGTTAGAGTAATTCTCAATGTTATTGGCTTCTATGTTTTCTTGGGATGATGATTTTCTGTGTTGTTTTGATGATGGATAGAAATTCTGGAGCTATGGAAGAATGGTGATGCAGTGTGCTTTGATGTGGATAGCACTGTGTGCCTGGATGAAGGAATTGACGAGCTTGCTGAATTTTGTGGGGCTGGAAAAGCTGTTGCAGAATGGACTGCAAAGTTAGATTGTTCAAATGGAAATTCTGTTTTGAGAAATGGTTTATGTTTTTGAATTTCTTTGGTATCTTTTTTGTTATATTTCACAGAGAAATGGGTGGTTCTGTTCCTTTTGAGGAAGCCTTGGCTGCTAGGTTATCTTTGTTGAATCCCTCTATGTCTCAACTTGAAAATTTTCTTCAGCAAAGGCCGCCAAGGTATGATTGAGACCAGCTGATTTTGTTTTCAGTGTTTTTTGTCTTGAGCAGCTTTCACATATTGATGATAATCAATGTAGCTTCATGACTTAGGAGTATTTCGCTTTCGATTTGGCTAGTAATCACGTTAAGTTGATCAGGCAGTTCCTACTCCCCCATTTCTCTTGCCTTAGACTTTTAACTTGGCAGAGCTGAAAGGTTTTATTGACTTGTCAACACTGAGAGAAATGATACCCTACACTTCTAATGATATTTTAGATTTATTGACTTGTTCGTTCTCATAACCATCCAAAACTTTAAAGGGGTGTTTTGATTCAACGGTTGAGTTGCTACTGCGTGACTAAGAGGTCGCATAGGTTTGAGTAGCTGAATCAGTCCCTTGTAAATGCAGTCTAACTGGTAAGGCAGCATACTATAGACTTGGAAGAAGTTGATTTTGCCCTAGAATATACTATAACAGTAGCTTTGTTGAACCAGGTTATTTTTTTGCTAGACCAGCCAAAACTCTGACGAGACAAAAAGTTTATATATGTATCACCAAAGCCTAACTACCTACTTTATTTTCTCTGCTTTCTCATCACTGTTTCTCCTATTGTATCCTGAACTGGTCAATTCAGACATATTTGGAACAATTCTTATGATTCTCTTTAATATGCAGACTTTCCCCTGGCATTGAAGAGTTAATCCAGAAACTAAAGGCTAATGGCAAGCATGTATATCTGATCTCAGGGAGCTTTCGTCAAATAATCAATGTATGGATAATAGTTGTAATGATTATTTTTTTGGATTTATTTTAGACTAAGAAGAGTATTTCAGTAGTAAAAAAATAGAGTAGTTAAAACTACAATTAAAATTCTTAAAAAAAACTACTACAATTTTTATGGAAGAATGGTGATGCAGTGTGCTTTGATGTGGATAGCACTGTGTGCATTGATGAAGGAATTGATGAGCTTGCTGAATTTTGCGGGACAGGAAAGGCTGCTGCAGACTGGACTGCTAGGTTAGATTGTTCAGATGGAATTTTTTTTTTTGATAAATGGTTTATATTTTTGAATTTCTTTGGTATCTCTTTTGTTATATTTGATTTAAGTGTTGAATTTTCACATAGCAATGGGTGGTTCTGTTCCTTTTGAGGAAGCATTGGCTGCTATGTTATTTTTGTTCGATCCCTCTATGGAAACTTGAAATTGATGAATGGTGTAGAGGGGCAACATGACATGGAAAATATAGGGAAAATGTTGACATTGATGCTTTTTTGTGCTTGCTGCAAGTTTTGTAACCAGTGACTTCTTCAATTTTTGATGCAGTGACTTCAAACAGCGATTGTCTGAACACCATGATGAAGTGCATAGCAGTAAGATATTGGTTAAATTCTTTGAGCTAAATCCAATTTCCGTATATCGTTATTTCATGCTTTGGATTCTTTCCGATAGACCATATCCTTTTAAAATTAGTGGGCTAATCAAACTAGTTTTATTTGATTTTTCAGTTCTACTTACTTCTAAGTATGAGAGTGTTGTTTCACCACAGTTACCAAATGTGAAGGTTCTAAACAATAGTGAAAGTAATACAACATTTGCAAATAAAGTAGGTATTCGCAGTCATAAATGTGAGATAAAAGCTATTCGGAAGAAGATGAAAGTAAGTTGTTTTTTCCATTCATTCTTCTCATAATGTTCTTGTTCTGTTCCGTTATTTCACACTGTTCATTGTTTATCCATGTTGTATAAGGTTATATTCATTTTATGTATGAGTGATCTACTGAACCTGATTTTCTTAATACAGTTTTGGTACTTTGGTCTCAGGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGGTTATAATCTACCTTCCCACGGTTTCCAAAAACTATTTCAATACCTCATTCAAAACTGTAATTAATAATAAATTGATATTCATATATCTTCATAGGTAA

Protein sequence

>MS.gene51505.t1

MEIPWIVDPTFFVFSLYMEALISYGINPVRVNVITKQRSCFPFESEPNLKKEILELWKNGDAVCFDVDSTVCLDEGIDELAEFCGAGKAVAEWTAKEMGGSVPFEEALAARLSLLNPSMSQLENFLQQRPPRLSPGIEELIQKLKANGKHVYLISGSFRQIINNGDAVCFDVDSTVCIDEGIDELAEFCGTGKAAADWTASDFKQRLSEHHDEVHSILLTSKYESVVSPQLPNVKVLNNSESNTTFANKVGIRSHKCEIKAIRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQVIIYLPTVSKNYFNTSFKTVINNKLIFIYLHR