Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51647.t1 | XP_024633556.1 | 94 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 3.80E-100 | 374.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51647.t1 | Q9LTT3 | 50.0 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 1.2e-41 | 171.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51647.t1 | I3SK14 | 94.0 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 4.6e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51647.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51647.t1 | MTR_3g009890 | 94.416 | 197 | 11 | 0 | 17 | 213 | 26 | 222 | 1.03e-134 | 380 |
| MS.gene51647.t1 | MTR_3g114920 | 45.000 | 220 | 113 | 3 | 1 | 215 | 1 | 217 | 1.79e-54 | 177 |
| MS.gene51647.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.16e-52 | 171 |
| MS.gene51647.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.27e-51 | 171 |
| MS.gene51647.t1 | MTR_7g005970 | 45.455 | 209 | 101 | 4 | 6 | 201 | 9 | 217 | 5.95e-50 | 169 |
| MS.gene51647.t1 | MTR_2g084375 | 83.871 | 62 | 10 | 0 | 159 | 220 | 201 | 262 | 1.60e-25 | 100 |
| MS.gene51647.t1 | MTR_2g084410 | 83.871 | 62 | 10 | 0 | 159 | 220 | 215 | 276 | 1.69e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51647.t1 | AT3G13350 | 50.000 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 3.01e-52 | 171 |
| MS.gene51647.t1 | AT1G55650 | 46.277 | 188 | 81 | 4 | 26 | 209 | 29 | 200 | 2.60e-51 | 169 |
| MS.gene51647.t1 | AT1G04880 | 44.103 | 195 | 101 | 3 | 16 | 202 | 14 | 208 | 9.09e-48 | 163 |
| MS.gene51647.t1 | AT1G76110 | 47.027 | 185 | 91 | 4 | 21 | 201 | 28 | 209 | 1.90e-45 | 154 |
Find 62 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTGATGCTAACCTCTTC+TGG | 0.176030 | 3.4:-4819636 | MS.gene51647:CDS |
| GGAGCAATTAGTAGGAAAAT+TGG | 0.205100 | 3.4:-4816753 | MS.gene51647:CDS |
| GTTCAGTCTCACGCGGATTT+TGG | 0.242316 | 3.4:+4819704 | None:intergenic |
| TGTTTCAAGCAATGCATCTA+AGG | 0.259440 | 3.4:-4816931 | MS.gene51647:CDS |
| TATCAATGATTCACCTGTTC+AGG | 0.286987 | 3.4:-4818203 | MS.gene51647:CDS |
| AGGTAATTGTAGATCGTAAA+TGG | 0.317695 | 3.4:-4818501 | MS.gene51647:CDS |
| TGTGTAGGATTCCTACTATA+GGG | 0.338046 | 3.4:-4818812 | MS.gene51647:intron |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.354657 | 3.4:+4817053 | None:intergenic |
| GAGCAATTAGTAGGAAAATT+GGG | 0.369568 | 3.4:-4816752 | MS.gene51647:CDS |
| CATAACAAGCGCATCATTCA+TGG | 0.386953 | 3.4:-4818443 | MS.gene51647:CDS |
| CGTATTGGTTGTGAAGCTAT+TGG | 0.406695 | 3.4:+4818237 | None:intergenic |
| TTCATTGACTTACCCTGAAC+AGG | 0.413930 | 3.4:+4818190 | None:intergenic |
| TTGTGTAGGATTCCTACTAT+AGG | 0.432421 | 3.4:-4818813 | MS.gene51647:intron |
| GTGATAAAGCAACGATAGAT+AGG | 0.439414 | 3.4:+4818411 | None:intergenic |
| TCGTGATGCTAACCTCTTCT+GGG | 0.445073 | 3.4:-4819635 | MS.gene51647:CDS |
| CATGAATGATGCGCTTGTTA+TGG | 0.445119 | 3.4:+4818444 | None:intergenic |
| GAGTAGAGAGCGGTTGGAGG+AGG | 0.454942 | 3.4:+4819667 | None:intergenic |
| TCTAAGGGTTCTTCTATTGA+AGG | 0.459768 | 3.4:-4816915 | MS.gene51647:intron |
| ACAATTGACATGAAATTTGA+TGG | 0.468681 | 3.4:-4817011 | MS.gene51647:CDS |
| ATATATAGTTACGGTGGACC+TGG | 0.474943 | 3.4:-4816985 | MS.gene51647:CDS |
| GATAGCAGCACCGTCCGTAT+TGG | 0.475279 | 3.4:+4818222 | None:intergenic |
| ATCTCGTGGTGGTATTGAAA+AGG | 0.485522 | 3.4:-4818748 | MS.gene51647:intron |
| CTTCACTAACCAGGTGTTGA+GGG | 0.490947 | 3.4:+4818352 | None:intergenic |
| CTCTATCCAGATGCTTTGAG+TGG | 0.513745 | 3.4:-4818268 | MS.gene51647:intron |
| CATTGCTTGAAACATGATAC+AGG | 0.516873 | 3.4:+4816940 | None:intergenic |
| ATCAATGATTCACCTGTTCA+GGG | 0.519797 | 3.4:-4818202 | MS.gene51647:intron |
| TTCCTACTAATTGCTCCTTG+TGG | 0.533197 | 3.4:+4816759 | None:intergenic |
| AGGTCAGAGTAGAGAGCGGT+TGG | 0.533695 | 3.4:+4819661 | None:intergenic |
| TCAGAGTAGAGAGCGGTTGG+AGG | 0.537076 | 3.4:+4819664 | None:intergenic |
| GGAAAATTGGGTTTGCGTGG+AGG | 0.541228 | 3.4:-4816740 | MS.gene51647:CDS |
| CAATAGCTTCACAACCAATA+CGG | 0.543956 | 3.4:-4818236 | MS.gene51647:CDS |
| TGATGGCGGATATATAGTTA+CGG | 0.545231 | 3.4:-4816994 | MS.gene51647:CDS |
| CAAGTCCCTCCCTCAACACC+TGG | 0.550783 | 3.4:-4818361 | MS.gene51647:intron |
| ATTAGTCCAGCACAGACACT+TGG | 0.556813 | 3.4:-4817050 | MS.gene51647:CDS |
| GGCCACAAGGAGCAATTAGT+AGG | 0.560286 | 3.4:-4816761 | MS.gene51647:CDS |
| GAAGAACCAAGTGTCTGTGC+TGG | 0.560864 | 3.4:+4817044 | None:intergenic |
| ATGCGCTTGTTATGGTATCT+CGG | 0.562285 | 3.4:+4818452 | None:intergenic |
| CTTCAACGAAGAGGTGATGC+AGG | 0.562980 | 3.4:+4818775 | None:intergenic |
| GTTTCAAGCAATGCATCTAA+GGG | 0.563003 | 3.4:-4816930 | MS.gene51647:CDS |
| GTGTAGGATTCCTACTATAG+GGG | 0.574437 | 3.4:-4818811 | MS.gene51647:intron |
| TTCGTTGAAGTAACATCTCG+TGG | 0.581244 | 3.4:-4818762 | MS.gene51647:CDS |
| TCTTCACTAACCAGGTGTTG+AGG | 0.585501 | 3.4:+4818351 | None:intergenic |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 3.4:-4816966 | MS.gene51647:CDS |
| GTAGGAAAATTGGGTTTGCG+TGG | 0.592801 | 3.4:-4816743 | MS.gene51647:CDS |
| GAGCGGTTGGAGGAGGACAA+AGG | 0.594063 | 3.4:+4819674 | None:intergenic |
| CACTAACCAGGTGTTGAGGG+AGG | 0.596662 | 3.4:+4818355 | None:intergenic |
| AATTGTAGATCGTAAATGGA+AGG | 0.598698 | 3.4:-4818497 | MS.gene51647:CDS |
| AAGAGGTGATGCAGGTCTAG+TGG | 0.600590 | 3.4:+4818783 | None:intergenic |
| ACACTTGGTTCTTCAGTGCG+TGG | 0.611516 | 3.4:-4817035 | MS.gene51647:CDS |
| TGTAGATCGTAAATGGAAGG+AGG | 0.611934 | 3.4:-4818494 | MS.gene51647:CDS |
| AGAGGTTAGCATCACGAACA+AGG | 0.617590 | 3.4:+4819641 | None:intergenic |
| ACTAACCAGGTGTTGAGGGA+GGG | 0.618972 | 3.4:+4818356 | None:intergenic |
| TATATAGTTACGGTGGACCT+GGG | 0.620088 | 3.4:-4816984 | MS.gene51647:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 3.4:+4816967 | None:intergenic |
| AGCTTCACAACCAATACGGA+CGG | 0.629115 | 3.4:-4818232 | MS.gene51647:CDS |
| TGTAGGATTCCTACTATAGG+GGG | 0.629514 | 3.4:-4818810 | MS.gene51647:intron |
| ATTGACATGAAATTTGATGG+CGG | 0.676313 | 3.4:-4817008 | MS.gene51647:CDS |
| AACAAGGTCAGAGTAGAGAG+CGG | 0.693390 | 3.4:+4819657 | None:intergenic |
| GAGATGTTACTTCAACGAAG+AGG | 0.709606 | 3.4:+4818766 | None:intergenic |
| TGGCGGATATATAGTTACGG+TGG | 0.725652 | 3.4:-4816991 | MS.gene51647:CDS |
| TTTGTGAGTTCAGTCTCACG+CGG | 0.743764 | 3.4:+4819697 | None:intergenic |
| GTTGAAGTAACATCTCGTGG+TGG | 0.754811 | 3.4:-4818759 | MS.gene51647:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAAAAATTGTATTTTAT+TGG | - | chr3.4:4817143-4817162 | MS.gene51647:intron | 10.0% |
| !! | AAATTTAAGAAAAAGATTAG+AGG | + | chr3.4:4817935-4817954 | None:intergenic | 15.0% |
| !!! | ATGATTTGTTTCTTTAATTT+AGG | - | chr3.4:4818900-4818919 | MS.gene51647:intron | 15.0% |
| !!! | TCTTTTTCTTAAATTTATGT+AGG | - | chr3.4:4817939-4817958 | MS.gene51647:intron | 15.0% |
| !!! | TTTTATGCACAAAAAAATAT+AGG | - | chr3.4:4817305-4817324 | MS.gene51647:intron | 15.0% |
| !!! | TTTTATTGGATAGTATAATA+TGG | - | chr3.4:4817157-4817176 | MS.gene51647:intron | 15.0% |
| !!! | TTTTTTTTTATCTCTTGTTA+CGG | - | chr3.4:4818804-4818823 | MS.gene51647:CDS | 15.0% |
| !! | AGGATTTATCTTAATGAATT+AGG | - | chr3.4:4817484-4817503 | MS.gene51647:intron | 20.0% |
| !! | GAAAATCTTGAATTATTGTT+AGG | + | chr3.4:4817350-4817369 | None:intergenic | 20.0% |
| !! | TACACAAAGCTAAAAAAAAA+TGG | + | chr3.4:4818931-4818950 | None:intergenic | 20.0% |
| !!! | AATCATGATTTGTTAAGAAT+AGG | + | chr3.4:4817187-4817206 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAACGTAATTAG+AGG | + | chr3.4:4818147-4818166 | None:intergenic | 20.0% |
| !!! | ATTTAAAACAAAACTGAACT+CGG | + | chr3.4:4817570-4817589 | None:intergenic | 20.0% |
| !!! | ATTTTCAAAACGTAATTAGA+GGG | + | chr3.4:4818146-4818165 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTATGTTTTTATG+TGG | - | chr3.4:4818501-4818520 | MS.gene51647:CDS | 20.0% |
| !!! | TTTTTTTTATCTCTTGTTAC+GGG | - | chr3.4:4818805-4818824 | MS.gene51647:CDS | 20.0% |
| ! | AAGGGCAAAACATTATTATT+AGG | + | chr3.4:4817622-4817641 | None:intergenic | 25.0% |
| ! | ACAATTGACATGAAATTTGA+TGG | - | chr3.4:4819449-4819468 | MS.gene51647:intron | 25.0% |
| ! | AGAAACAAATCATCTAAGAA+TGG | + | chr3.4:4818893-4818912 | None:intergenic | 25.0% |
| ! | AGGGCAAAACATTATTATTA+GGG | + | chr3.4:4817621-4817640 | None:intergenic | 25.0% |
| ! | ATATACTTTCCATTTATCTG+TGG | - | chr3.4:4819354-4819373 | MS.gene51647:intron | 25.0% |
| ! | ATTTGATTCAGATTGTGAAT+CGG | - | chr3.4:4817210-4817229 | MS.gene51647:intron | 25.0% |
| ! | GAAAACACATAAGAAAGTAA+AGG | + | chr3.4:4817805-4817824 | None:intergenic | 25.0% |
| ! | GCAGAAAAAACACTAAAAAA+TGG | + | chr3.4:4816987-4817006 | None:intergenic | 25.0% |
| ! | GTCAATTTCATTTGTATGAT+GGG | - | chr3.4:4817037-4817056 | MS.gene51647:CDS | 25.0% |
| !! | AATTAGTAGAGAAGTATACA+AGG | + | chr3.4:4817742-4817761 | None:intergenic | 25.0% |
| !! | ATATTTTTCTGTGATGTATG+TGG | - | chr3.4:4818743-4818762 | MS.gene51647:intron | 25.0% |
| !! | ATTAAAACAGCTTTTCAGTT+TGG | - | chr3.4:4817841-4817860 | MS.gene51647:intron | 25.0% |
| !!! | ATTCTTAGTTTTCGATTTTG+TGG | - | chr3.4:4817009-4817028 | MS.gene51647:CDS | 25.0% |
| !!! | TGCTTCTTTTATTTTGAAAC+TGG | - | chr3.4:4818849-4818868 | MS.gene51647:intron | 25.0% |
| !!! | TTCTTAGTTTTCGATTTTGT+GGG | - | chr3.4:4817010-4817029 | MS.gene51647:CDS | 25.0% |
| AAAACGTAATTAGAGGGAAA+AGG | + | chr3.4:4818140-4818159 | None:intergenic | 30.0% | |
| AAACCTTTACCACAGATAAA+TGG | + | chr3.4:4819366-4819385 | None:intergenic | 30.0% | |
| AACAAGCTGTGATACAAAAA+GGG | + | chr3.4:4816932-4816951 | None:intergenic | 30.0% | |
| AATTGTAGATCGTAAATGGA+AGG | - | chr3.4:4817963-4817982 | MS.gene51647:intron | 30.0% | |
| AGGATTCATCTTAATGAATC+TGG | - | chr3.4:4817504-4817523 | MS.gene51647:intron | 30.0% | |
| AGGTAATTGTAGATCGTAAA+TGG | - | chr3.4:4817959-4817978 | MS.gene51647:intron | 30.0% | |
| ATGTATAACCTAACTCATGA+TGG | + | chr3.4:4818667-4818686 | None:intergenic | 30.0% | |
| ATTGACATGAAATTTGATGG+CGG | - | chr3.4:4819452-4819471 | MS.gene51647:intron | 30.0% | |
| CTACTATTGTAAGAAGTTAG+AGG | + | chr3.4:4818370-4818389 | None:intergenic | 30.0% | |
| CTTTGTGTACATCTAATCTA+TGG | - | chr3.4:4818942-4818961 | MS.gene51647:intron | 30.0% | |
| GAGCAATTAGTAGGAAAATT+GGG | - | chr3.4:4819708-4819727 | MS.gene51647:CDS | 30.0% | |
| GGATGTATAGTCAGTATTAT+TGG | + | chr3.4:4818646-4818665 | None:intergenic | 30.0% | |
| GGTCAATTTCATTTGTATGA+TGG | - | chr3.4:4817036-4817055 | MS.gene51647:CDS | 30.0% | |
| TATATCGACCGAAATCAAAT+AGG | - | chr3.4:4819617-4819636 | MS.gene51647:CDS | 30.0% | |
| TGAATCCAGATTCATTAAGA+TGG | + | chr3.4:4817451-4817470 | None:intergenic | 30.0% | |
| TGATTCGCTACAAAAAGTTT+AGG | - | chr3.4:4817399-4817418 | MS.gene51647:intron | 30.0% | |
| TGCTGTTATCTGAATGAATT+AGG | - | chr3.4:4817423-4817442 | MS.gene51647:intron | 30.0% | |
| TGTATGTGGAAATAGAAGTA+AGG | - | chr3.4:4818757-4818776 | MS.gene51647:CDS | 30.0% | |
| TTTCCATTTATCTGTGGTAA+AGG | - | chr3.4:4819360-4819379 | MS.gene51647:intron | 30.0% | |
| ! | TAACCACTCCTATTTGATTT+CGG | + | chr3.4:4819628-4819647 | None:intergenic | 30.0% |
| !! | AGCTATTAGCTGTTTTCATT+AGG | + | chr3.4:4819192-4819211 | None:intergenic | 30.0% |
| !! | CTATGTTTTTATGTGGTGTT+TGG | - | chr3.4:4818508-4818527 | MS.gene51647:intron | 30.0% |
| !!! | TGAATCGGAAACCTATTTTT+TGG | - | chr3.4:4817225-4817244 | MS.gene51647:intron | 30.0% |
| AACAGAGTCCTAATCTATGT+TGG | - | chr3.4:4819324-4819343 | MS.gene51647:intron | 35.0% | |
| AATAGTAGTAGCAGAGATAG+GGG | - | chr3.4:4818382-4818401 | MS.gene51647:CDS | 35.0% | |
| ACAATAGTAGTAGCAGAGAT+AGG | - | chr3.4:4818380-4818399 | MS.gene51647:CDS | 35.0% | |
| ACATAGATTAGGACTCTGTT+TGG | + | chr3.4:4819324-4819343 | None:intergenic | 35.0% | |
| AGGATCCATCTTAATGAATC+TGG | - | chr3.4:4817443-4817462 | MS.gene51647:intron | 35.0% | |
| ATCAATGATTCACCTGTTCA+GGG | - | chr3.4:4818258-4818277 | MS.gene51647:CDS | 35.0% | |
| ATGTAACCTGTTAGCTCATT+CGG | + | chr3.4:4818578-4818597 | None:intergenic | 35.0% | |
| ATTTACTGCCATAAGCACAT+AGG | - | chr3.4:4819075-4819094 | MS.gene51647:intron | 35.0% | |
| CAATAGCTTCACAACCAATA+CGG | - | chr3.4:4818224-4818243 | MS.gene51647:CDS | 35.0% | |
| CAATAGTAGTAGCAGAGATA+GGG | - | chr3.4:4818381-4818400 | MS.gene51647:CDS | 35.0% | |
| CATGTATGTTTCATGAGACA+AGG | + | chr3.4:4817779-4817798 | None:intergenic | 35.0% | |
| CATTGCTTGAAACATGATAC+AGG | + | chr3.4:4819523-4819542 | None:intergenic | 35.0% | |
| CGATTCACAGTCCAAAAAAT+AGG | + | chr3.4:4817239-4817258 | None:intergenic | 35.0% | |
| CTATACATCCATCATGAGTT+AGG | - | chr3.4:4818656-4818675 | MS.gene51647:intron | 35.0% | |
| GAACAAGCTGTGATACAAAA+AGG | + | chr3.4:4816933-4816952 | None:intergenic | 35.0% | |
| GAATCCTACACAAACACAAA+GGG | + | chr3.4:4817640-4817659 | None:intergenic | 35.0% | |
| GGAGCAATTAGTAGGAAAAT+TGG | - | chr3.4:4819707-4819726 | MS.gene51647:CDS | 35.0% | |
| GGATAGAGGAAATTATTGAG+TGG | + | chr3.4:4818180-4818199 | None:intergenic | 35.0% | |
| GTGATAAAGCAACGATAGAT+AGG | + | chr3.4:4818052-4818071 | None:intergenic | 35.0% | |
| GTTTCAAGCAATGCATCTAA+GGG | - | chr3.4:4819530-4819549 | MS.gene51647:intron | 35.0% | |
| TAGGTATCTTGGAGAGTTTA+AGG | + | chr3.4:4819173-4819192 | None:intergenic | 35.0% | |
| TATCAATGATTCACCTGTTC+AGG | - | chr3.4:4818257-4818276 | MS.gene51647:CDS | 35.0% | |
| TCCACTTACCAACATAGATT+AGG | + | chr3.4:4819335-4819354 | None:intergenic | 35.0% | |
| TCTAAGGGTTCTTCTATTGA+AGG | - | chr3.4:4819545-4819564 | MS.gene51647:intron | 35.0% | |
| TGTGTAGGATTCCTACTATA+GGG | - | chr3.4:4817648-4817667 | MS.gene51647:intron | 35.0% | |
| TGTTTCAAGCAATGCATCTA+AGG | - | chr3.4:4819529-4819548 | MS.gene51647:intron | 35.0% | |
| TTGTGTAGGATTCCTACTAT+AGG | - | chr3.4:4817647-4817666 | MS.gene51647:intron | 35.0% | |
| TTTACTGCCATAAGCACATA+GGG | - | chr3.4:4819076-4819095 | MS.gene51647:intron | 35.0% | |
| ! | ACATGTGATTTGTGATGGAA+TGG | - | chr3.4:4818473-4818492 | MS.gene51647:CDS | 35.0% |
| ! | AGTTTTCGATTTTGTGGGTT+AGG | - | chr3.4:4817015-4817034 | MS.gene51647:CDS | 35.0% |
| ! | ATCCAAAGCTTTATCACACT+AGG | + | chr3.4:4819039-4819058 | None:intergenic | 35.0% |
| ! | ATTGAAGTTTTTCCCAGAAG+AGG | + | chr3.4:4816840-4816859 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3.4:4816856-4816875 | MS.gene51647:intron | 35.0% |
| ! | GGTACGCTCATTTAAAACAA+CGG | - | chr3.4:4819566-4819585 | MS.gene51647:intron | 35.0% |
| ! | TCCTAATCTATGTTGGTAAG+TGG | - | chr3.4:4819331-4819350 | MS.gene51647:intron | 35.0% |
| ! | TTTTTGCTGAGAATTATGCC+AGG | - | chr3.4:4819657-4819676 | MS.gene51647:CDS | 35.0% |
| !! | GCTGTTTTCATTAGGTATCT+TGG | + | chr3.4:4819184-4819203 | None:intergenic | 35.0% |
| !! | TCGGGTTATAGTCTTATTGT+CGG | + | chr3.4:4818559-4818578 | None:intergenic | 35.0% |
| !! | TGATGGCGGATATATAGTTA+CGG | - | chr3.4:4819466-4819485 | MS.gene51647:intron | 35.0% |
| AGGTAGTATCTTCACTAACC+AGG | + | chr3.4:4818120-4818139 | None:intergenic | 40.0% | |
| ATATATAGTTACGGTGGACC+TGG | - | chr3.4:4819475-4819494 | MS.gene51647:intron | 40.0% | |
| CACCTAGTGTGATAAAGCTT+TGG | - | chr3.4:4819034-4819053 | MS.gene51647:intron | 40.0% | |
| CATAACAAGCGCATCATTCA+TGG | - | chr3.4:4818017-4818036 | MS.gene51647:intron | 40.0% | |
| GAATGAGCTAACAGGTTACA+TGG | - | chr3.4:4818577-4818596 | MS.gene51647:intron | 40.0% | |
| GGAATCCTACACAAACACAA+AGG | + | chr3.4:4817641-4817660 | None:intergenic | 40.0% | |
| GGATTCATGTCTTGTGAAAC+AGG | - | chr3.4:4817464-4817483 | MS.gene51647:intron | 40.0% | |
| GTGTAGGATTCCTACTATAG+GGG | - | chr3.4:4817649-4817668 | MS.gene51647:intron | 40.0% | |
| TATAACCCGAATGAGCTAAC+AGG | - | chr3.4:4818569-4818588 | MS.gene51647:intron | 40.0% | |
| TATATAGTTACGGTGGACCT+GGG | - | chr3.4:4819476-4819495 | MS.gene51647:intron | 40.0% | |
| TGATCCATGACAAATGTCAG+AGG | + | chr3.4:4818426-4818445 | None:intergenic | 40.0% | |
| TGTAACCTGTTAGCTCATTC+GGG | + | chr3.4:4818577-4818596 | None:intergenic | 40.0% | |
| TGTAGATCGTAAATGGAAGG+AGG | - | chr3.4:4817966-4817985 | MS.gene51647:intron | 40.0% | |
| TGTAGGATTCCTACTATAGG+GGG | - | chr3.4:4817650-4817669 | MS.gene51647:intron | 40.0% | |
| TGTTCCTCTGACATTTGTCA+TGG | - | chr3.4:4818419-4818438 | MS.gene51647:CDS | 40.0% | |
| TTACTGCCATAAGCACATAG+GGG | - | chr3.4:4819077-4819096 | MS.gene51647:intron | 40.0% | |
| TTCCTACTAATTGCTCCTTG+TGG | + | chr3.4:4819704-4819723 | None:intergenic | 40.0% | |
| TTCGTTGAAGTAACATCTCG+TGG | - | chr3.4:4817698-4817717 | MS.gene51647:intron | 40.0% | |
| TTGGGAGAGCTTATGGAAAT+TGG | - | chr3.4:4819105-4819124 | MS.gene51647:intron | 40.0% | |
| TTTGCCCTTTGTGTTTGTGT+AGG | - | chr3.4:4817633-4817652 | MS.gene51647:intron | 40.0% | |
| ! | AAGCTTTATCACACTAGGTG+AGG | + | chr3.4:4819034-4819053 | None:intergenic | 40.0% |
| ! | ATCGCTGTGTGTAGCATTTT+TGG | + | chr3.4:4817538-4817557 | None:intergenic | 40.0% |
| ! | ATCTCGTGGTGGTATTGAAA+AGG | - | chr3.4:4817712-4817731 | MS.gene51647:intron | 40.0% |
| ! | CATGAATGATGCGCTTGTTA+TGG | + | chr3.4:4818019-4818038 | None:intergenic | 40.0% |
| ! | GAGATGTTACTTCAACGAAG+AGG | + | chr3.4:4817697-4817716 | None:intergenic | 40.0% |
| ! | GTGATTTGTGATGGAATGGT+TGG | - | chr3.4:4818477-4818496 | MS.gene51647:CDS | 40.0% |
| !! | ATGCGCTTGTTATGGTATCT+CGG | + | chr3.4:4818011-4818030 | None:intergenic | 40.0% |
| !! | CGTATTGGTTGTGAAGCTAT+TGG | + | chr3.4:4818226-4818245 | None:intergenic | 40.0% |
| !! | TTCATTGACTTACCCTGAAC+AGG | + | chr3.4:4818273-4818292 | None:intergenic | 40.0% |
| AACAAGGTCAGAGTAGAGAG+CGG | + | chr3.4:4816806-4816825 | None:intergenic | 45.0% | |
| AACAGTCCCCTATGTGCTTA+TGG | + | chr3.4:4819086-4819105 | None:intergenic | 45.0% | |
| AAGCACATAGGGGACTGTTT+GGG | - | chr3.4:4819087-4819106 | MS.gene51647:intron | 45.0% | |
| AGAGGTTAGCATCACGAACA+AGG | + | chr3.4:4816822-4816841 | None:intergenic | 45.0% | |
| AGCTTCACAACCAATACGGA+CGG | - | chr3.4:4818228-4818247 | MS.gene51647:CDS | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | chr3.4:4819410-4819429 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+TGG | - | chr3.4:4819410-4819429 | MS.gene51647:intron | 45.0% | |
| CCAGCTACTTAGATCAAACG+AGG | + | chr3.4:4819011-4819030 | None:intergenic | 45.0% | |
| CCTCGTTTGATCTAAGTAGC+TGG | - | chr3.4:4819008-4819027 | MS.gene51647:intron | 45.0% | |
| CGACCGAAATCAAATAGGAG+TGG | - | chr3.4:4819622-4819641 | MS.gene51647:CDS | 45.0% | |
| GTAGGAAAATTGGGTTTGCG+TGG | - | chr3.4:4819717-4819736 | MS.gene51647:CDS | 45.0% | |
| GTTGAAGTAACATCTCGTGG+TGG | - | chr3.4:4817701-4817720 | MS.gene51647:intron | 45.0% | |
| TAAGCACATAGGGGACTGTT+TGG | - | chr3.4:4819086-4819105 | MS.gene51647:intron | 45.0% | |
| TCGTGATGCTAACCTCTTCT+GGG | - | chr3.4:4816825-4816844 | MS.gene51647:intron | 45.0% | |
| TTCGTGATGCTAACCTCTTC+TGG | - | chr3.4:4816824-4816843 | MS.gene51647:intron | 45.0% | |
| TTTGTGAGTTCAGTCTCACG+CGG | + | chr3.4:4816766-4816785 | None:intergenic | 45.0% | |
| ! | ACGTTTCCACTCAAAGCATC+TGG | + | chr3.4:4818201-4818220 | None:intergenic | 45.0% |
| ! | CACTCAAAGCATCTGGATAG+AGG | + | chr3.4:4818194-4818213 | None:intergenic | 45.0% |
| ! | CGCTGACATGTGATTTGTGA+TGG | - | chr3.4:4818468-4818487 | MS.gene51647:CDS | 45.0% |
| ! | CTCTATCCAGATGCTTTGAG+TGG | - | chr3.4:4818192-4818211 | MS.gene51647:intron | 45.0% |
| ! | TCTTCACTAACCAGGTGTTG+AGG | + | chr3.4:4818112-4818131 | None:intergenic | 45.0% |
| ! | TGGCGGATATATAGTTACGG+TGG | - | chr3.4:4819469-4819488 | MS.gene51647:intron | 45.0% |
| !! | CTTCACTAACCAGGTGTTGA+GGG | + | chr3.4:4818111-4818130 | None:intergenic | 45.0% |
| AAGAGGTGATGCAGGTCTAG+TGG | + | chr3.4:4817680-4817699 | None:intergenic | 50.0% | |
| AGTGGCTTACCCCCTATAGT+AGG | + | chr3.4:4817662-4817681 | None:intergenic | 50.0% | |
| CCTTGTGGCCTGCAAAATGA+GGG | + | chr3.4:4819689-4819708 | None:intergenic | 50.0% | |
| CTTCAACGAAGAGGTGATGC+AGG | + | chr3.4:4817688-4817707 | None:intergenic | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | + | chr3.4:4819496-4819515 | None:intergenic | 50.0% | |
| GAAGAACCAAGTGTCTGTGC+TGG | + | chr3.4:4819419-4819438 | None:intergenic | 50.0% | |
| GGAAAATTGGGTTTGCGTGG+AGG | - | chr3.4:4819720-4819739 | MS.gene51647:CDS | 50.0% | |
| GGACTGTTTGGGAGAGCTTA+TGG | - | chr3.4:4819098-4819117 | MS.gene51647:intron | 50.0% | |
| GGCCACAAGGAGCAATTAGT+AGG | - | chr3.4:4819699-4819718 | MS.gene51647:CDS | 50.0% | |
| TCCTTGTGGCCTGCAAAATG+AGG | + | chr3.4:4819690-4819709 | None:intergenic | 50.0% | |
| ! | ACACTTGGTTCTTCAGTGCG+TGG | - | chr3.4:4819425-4819444 | MS.gene51647:intron | 50.0% |
| ! | GCAAAATGAGGGCTTTAGCC+TGG | + | chr3.4:4819678-4819697 | None:intergenic | 50.0% |
| ! | GGCTAAAGCCCTCATTTTGC+AGG | - | chr3.4:4819678-4819697 | MS.gene51647:CDS | 50.0% |
| ! | GTTCAGTCTCACGCGGATTT+TGG | + | chr3.4:4816759-4816778 | None:intergenic | 50.0% |
| !! | ACTAACCAGGTGTTGAGGGA+GGG | + | chr3.4:4818107-4818126 | None:intergenic | 50.0% |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | chr3.4:4819494-4819513 | MS.gene51647:intron | 50.0% |
| AGGTCAGAGTAGAGAGCGGT+TGG | + | chr3.4:4816802-4816821 | None:intergenic | 55.0% | |
| GATAGCAGCACCGTCCGTAT+TGG | + | chr3.4:4818241-4818260 | None:intergenic | 55.0% | |
| TCAGAGTAGAGAGCGGTTGG+AGG | + | chr3.4:4816799-4816818 | None:intergenic | 55.0% | |
| ! | CCCTCATTTTGCAGGCCACA+AGG | - | chr3.4:4819686-4819705 | MS.gene51647:CDS | 55.0% |
| !! | CACTAACCAGGTGTTGAGGG+AGG | + | chr3.4:4818108-4818127 | None:intergenic | 55.0% |
| CAAGTCCCTCCCTCAACACC+TGG | - | chr3.4:4818099-4818118 | MS.gene51647:intron | 60.0% | |
| GAGCGGTTGGAGGAGGACAA+AGG | + | chr3.4:4816789-4816808 | None:intergenic | 60.0% | |
| GAGTAGAGAGCGGTTGGAGG+AGG | + | chr3.4:4816796-4816815 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 4816733 | 4819749 | 4816733 | ID=MS.gene51647 |
| chr3.4 | mRNA | 4816733 | 4819749 | 4816733 | ID=MS.gene51647.t1;Parent=MS.gene51647 |
| chr3.4 | exon | 4819592 | 4819749 | 4819592 | ID=MS.gene51647.t1.exon1;Parent=MS.gene51647.t1 |
| chr3.4 | CDS | 4819592 | 4819749 | 4819592 | ID=cds.MS.gene51647.t1;Parent=MS.gene51647.t1 |
| chr3.4 | exon | 4818749 | 4818827 | 4818749 | ID=MS.gene51647.t1.exon2;Parent=MS.gene51647.t1 |
| chr3.4 | CDS | 4818749 | 4818827 | 4818749 | ID=cds.MS.gene51647.t1;Parent=MS.gene51647.t1 |
| chr3.4 | exon | 4818362 | 4818521 | 4818362 | ID=MS.gene51647.t1.exon3;Parent=MS.gene51647.t1 |
| chr3.4 | CDS | 4818362 | 4818521 | 4818362 | ID=cds.MS.gene51647.t1;Parent=MS.gene51647.t1 |
| chr3.4 | exon | 4818203 | 4818280 | 4818203 | ID=MS.gene51647.t1.exon4;Parent=MS.gene51647.t1 |
| chr3.4 | CDS | 4818203 | 4818280 | 4818203 | ID=cds.MS.gene51647.t1;Parent=MS.gene51647.t1 |
| chr3.4 | exon | 4816916 | 4817080 | 4816916 | ID=MS.gene51647.t1.exon5;Parent=MS.gene51647.t1 |
| chr3.4 | CDS | 4816916 | 4817080 | 4816916 | ID=cds.MS.gene51647.t1;Parent=MS.gene51647.t1 |
| chr3.4 | exon | 4816733 | 4816782 | 4816733 | ID=MS.gene51647.t1.exon6;Parent=MS.gene51647.t1 |
| chr3.4 | CDS | 4816733 | 4816782 | 4816733 | ID=cds.MS.gene51647.t1;Parent=MS.gene51647.t1 |
| Gene Sequence |
| Protein sequence |
