Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51708.t1 | AES68615.2 | 76.6 | 529 | 61 | 9 | 81 | 572 | 1 | 503 | 1.80E-223 | 785.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51708.t1 | Q9SLH0 | 50.2 | 309 | 130 | 6 | 20 | 309 | 31 | 334 | 4.0e-83 | 310.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51708.t1 | G7IVH7 | 76.6 | 529 | 61 | 9 | 81 | 572 | 1 | 503 | 1.3e-223 | 785.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51708.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51708.t1 | MTR_3g010790 | 79.048 | 525 | 55 | 8 | 81 | 572 | 1 | 503 | 0.0 | 826 |
| MS.gene51708.t1 | MTR_6g060600 | 46.565 | 655 | 236 | 16 | 9 | 564 | 18 | 657 | 1.39e-166 | 489 |
| MS.gene51708.t1 | MTR_6g460640 | 45.697 | 674 | 243 | 18 | 1 | 564 | 1 | 661 | 4.72e-162 | 477 |
| MS.gene51708.t1 | MTR_3g078770 | 51.568 | 287 | 129 | 4 | 32 | 312 | 51 | 333 | 1.91e-99 | 315 |
| MS.gene51708.t1 | MTR_5g087790 | 51.042 | 288 | 132 | 3 | 29 | 309 | 45 | 330 | 1.58e-98 | 312 |
| MS.gene51708.t1 | MTR_2g098470 | 52.364 | 275 | 113 | 5 | 17 | 281 | 24 | 290 | 4.74e-92 | 295 |
| MS.gene51708.t1 | MTR_3g087530 | 48.000 | 250 | 125 | 3 | 33 | 278 | 32 | 280 | 1.25e-80 | 259 |
| MS.gene51708.t1 | MTR_8g091370 | 48.837 | 258 | 124 | 4 | 26 | 278 | 17 | 271 | 1.04e-76 | 250 |
| MS.gene51708.t1 | MTR_1g024420 | 64.078 | 103 | 29 | 1 | 29 | 123 | 6 | 108 | 7.10e-36 | 130 |
| MS.gene51708.t1 | MTR_3g010785 | 92.500 | 80 | 5 | 1 | 1 | 79 | 1 | 80 | 6.63e-25 | 99.0 |
| MS.gene51708.t1 | MTR_6g060630 | 59.091 | 88 | 20 | 3 | 448 | 520 | 120 | 206 | 9.80e-21 | 91.3 |
| MS.gene51708.t1 | MTR_7g095580 | 36.634 | 101 | 58 | 1 | 70 | 164 | 1 | 101 | 9.64e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51708.t1 | AT2G27050 | 53.160 | 269 | 110 | 4 | 29 | 286 | 45 | 308 | 7.56e-99 | 312 |
| MS.gene51708.t1 | AT3G20770 | 49.679 | 312 | 146 | 4 | 5 | 309 | 23 | 330 | 2.41e-98 | 312 |
| MS.gene51708.t1 | AT1G73730 | 48.254 | 315 | 135 | 7 | 16 | 312 | 23 | 327 | 5.93e-92 | 293 |
| MS.gene51708.t1 | AT1G73730 | 47.937 | 315 | 136 | 6 | 16 | 312 | 11 | 315 | 7.20e-92 | 293 |
| MS.gene51708.t1 | AT5G10120 | 45.247 | 263 | 131 | 5 | 26 | 278 | 16 | 275 | 6.76e-76 | 249 |
| MS.gene51708.t1 | AT5G21120 | 43.151 | 292 | 143 | 5 | 38 | 309 | 53 | 341 | 8.54e-76 | 249 |
| MS.gene51708.t1 | AT5G21120 | 43.151 | 292 | 143 | 5 | 38 | 309 | 53 | 341 | 8.54e-76 | 249 |
| MS.gene51708.t1 | AT5G21120 | 43.151 | 292 | 143 | 5 | 38 | 309 | 60 | 348 | 9.64e-76 | 250 |
| MS.gene51708.t1 | AT5G65100 | 41.935 | 279 | 136 | 5 | 25 | 280 | 32 | 307 | 1.21e-71 | 240 |
Find 114 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACATTGTTCTTCATATT+TGG | 0.130679 | 3.4:-6784422 | None:intergenic |
| TTCTCTTGGCCAAACAATAT+TGG | 0.211643 | 3.4:+6786045 | MS.gene51708:CDS |
| AACAACCAATTCCACATAAT+TGG | 0.212331 | 3.4:+6785186 | MS.gene51708:CDS |
| AAGGAGAAGATGTTTCTATT+TGG | 0.240323 | 3.4:+6785647 | MS.gene51708:CDS |
| TGTTGCTGCTTCCTCCTATT+TGG | 0.243104 | 3.4:-6785161 | None:intergenic |
| AGATTTGAGGCTGAAAATTT+TGG | 0.272574 | 3.4:-6785723 | None:intergenic |
| GAAGAATTTAAGAATGATTC+AGG | 0.273405 | 3.4:-6784880 | None:intergenic |
| ATGCTAAGGATACAGCTATT+TGG | 0.278436 | 3.4:+6784812 | MS.gene51708:CDS |
| CTCCTGATCTTCTGAAAATT+AGG | 0.282984 | 3.4:-6784751 | None:intergenic |
| CCATTTGAGGCTGCATGTTT+TGG | 0.285639 | 3.4:-6785807 | None:intergenic |
| TCTCTTGGCCAAACAATATT+GGG | 0.290198 | 3.4:+6786046 | MS.gene51708:CDS |
| CACATGATTTGAAGAAGGTT+TGG | 0.299071 | 3.4:+6784689 | MS.gene51708:CDS |
| CAACTCCAATTATGTGGAAT+TGG | 0.301685 | 3.4:-6785191 | None:intergenic |
| TAACTTTGTGTTGCCACATT+AGG | 0.315473 | 3.4:-6786018 | None:intergenic |
| TTCATCTTTAGATGAGTTGA+TGG | 0.334799 | 3.4:+6785948 | MS.gene51708:CDS |
| TATTAATTCCCAATATTGTT+TGG | 0.336531 | 3.4:-6786054 | None:intergenic |
| GATGTTCGTGGCTTCGTCTA+TGG | 0.352458 | 3.4:+6784295 | MS.gene51708:CDS |
| CAAACCAATGATTGGCTCTT+CGG | 0.371062 | 3.4:+6784336 | MS.gene51708:CDS |
| ATTGAACCTAATATTGTATC+AGG | 0.373081 | 3.4:-6784508 | None:intergenic |
| CGAATCATGGTGGAAGGAAA+TGG | 0.374307 | 3.4:+6784621 | MS.gene51708:CDS |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 3.4:+6784595 | MS.gene51708:CDS |
| AAGAGAAAGGCTAACCAAAT+AGG | 0.386111 | 3.4:+6785147 | MS.gene51708:CDS |
| GACCTACCTGATACAATATT+AGG | 0.387617 | 3.4:+6784502 | MS.gene51708:CDS |
| TCATATTTGGCGATTGCAGC+TGG | 0.389765 | 3.4:-6784409 | None:intergenic |
| TTCTTAAATTCTTCTTGTGT+TGG | 0.395347 | 3.4:+6784889 | MS.gene51708:CDS |
| CACAAAGTTATGATTTCTCT+TGG | 0.396627 | 3.4:+6786031 | MS.gene51708:CDS |
| GTTGGAATCATGTTGGTAAC+TGG | 0.406571 | 3.4:-6785772 | None:intergenic |
| TAGAAATTCTGCTCCATTTG+AGG | 0.408160 | 3.4:-6785820 | None:intergenic |
| GTGCACAAGAGGGCATATTA+AGG | 0.410074 | 3.4:+6783185 | MS.gene51708:CDS |
| ATCATTGAAGTGTAGATTTG+AGG | 0.410822 | 3.4:-6785736 | None:intergenic |
| CCAAAACATGCAGCCTCAAA+TGG | 0.411657 | 3.4:+6785807 | MS.gene51708:CDS |
| CCCTCATCACATGATGATAA+AGG | 0.413199 | 3.4:-6784982 | None:intergenic |
| TATTAGTTATGAAGAAAGAT+TGG | 0.415453 | 3.4:+6784843 | MS.gene51708:CDS |
| ACCCCAAAGAAAACATCCTT+TGG | 0.424688 | 3.4:+6784561 | MS.gene51708:CDS |
| CGGAAAATCTACGCGGTTGG+TGG | 0.429144 | 3.4:+6784356 | MS.gene51708:CDS |
| CAATCTTGTTATTGAGAGTA+GGG | 0.434145 | 3.4:+6785116 | MS.gene51708:CDS |
| GGAGTATTGTTAGACATTCC+AGG | 0.438919 | 3.4:+6784770 | MS.gene51708:CDS |
| AGCTTCCAACTCCAATTATG+TGG | 0.441856 | 3.4:-6785197 | None:intergenic |
| AGGAACTAGAGACAAAGATA+TGG | 0.443648 | 3.4:+6783068 | MS.gene51708:CDS |
| GACAATGGCTCGTGCACAAG+AGG | 0.447975 | 3.4:+6783174 | MS.gene51708:CDS |
| TGAAAGTAGTTATGAGTTTG+TGG | 0.453514 | 3.4:+6784912 | MS.gene51708:CDS |
| GAAGGAAATGGGATTTAGTA+AGG | 0.462346 | 3.4:+6784633 | MS.gene51708:CDS |
| CACCATGATTCGTTCCCTGT+TGG | 0.467429 | 3.4:-6784610 | None:intergenic |
| GACAATGGCAAACCAATGAT+TGG | 0.467907 | 3.4:+6784328 | MS.gene51708:CDS |
| AAAACCACATGATTTGAAGA+AGG | 0.473630 | 3.4:+6784684 | MS.gene51708:CDS |
| TGTTGCTTGATGAGCAAGTA+AGG | 0.474666 | 3.4:+6784464 | MS.gene51708:CDS |
| GAAGCACCGTTATCAACGTT+GGG | 0.485553 | 3.4:-6782977 | None:intergenic |
| GGCCAACAGGGAACGAATCA+TGG | 0.488109 | 3.4:+6784608 | MS.gene51708:CDS |
| ACCAACATGATTCCAACTCC+TGG | 0.488765 | 3.4:+6785778 | MS.gene51708:CDS |
| GCAAAATAAATTCAATGCTA+AGG | 0.497897 | 3.4:+6784798 | MS.gene51708:CDS |
| TGTGAAGTTTCAACAGTGAA+TGG | 0.499106 | 3.4:+6784439 | MS.gene51708:CDS |
| CCTGTTGGCCACCATGGTGG+AGG | 0.500513 | 3.4:-6784595 | None:intergenic |
| AAAGTAAACTTTGAGGAAAA+CGG | 0.500540 | 3.4:+6784385 | MS.gene51708:CDS |
| ACATTAACGACTTCAGCATT+AGG | 0.506244 | 3.4:-6785886 | None:intergenic |
| GGTAGGTCATACAAGGAGTA+AGG | 0.514149 | 3.4:-6784487 | None:intergenic |
| AACATGATTCCTACTCCTGC+TGG | 0.514537 | 3.4:+6785694 | MS.gene51708:CDS |
| GAATCATGGTGGAAGGAAAT+GGG | 0.515364 | 3.4:+6784622 | MS.gene51708:CDS |
| AACAATGCAAAACAAGATAA+CGG | 0.516750 | 3.4:+6783001 | MS.gene51708:CDS |
| CAATTCCACATAATTGGAGT+TGG | 0.517142 | 3.4:+6785192 | MS.gene51708:CDS |
| TTGGAAAATTTGTGTGTTGA+CGG | 0.518161 | 3.4:+6784708 | MS.gene51708:CDS |
| AAATCTACGCGGTTGGTGGA+AGG | 0.522592 | 3.4:+6784360 | MS.gene51708:CDS |
| AAGTGACAATAAAACATCAC+TGG | 0.527333 | 3.4:+6783135 | MS.gene51708:CDS |
| CAAACCTTCTTCAAATCATG+TGG | 0.527454 | 3.4:-6784688 | None:intergenic |
| AACCTCCATGATGATTGTCT+TGG | 0.533086 | 3.4:-6785083 | None:intergenic |
| TAGGGGTGCTAATAAGAGAA+AGG | 0.537089 | 3.4:+6785134 | MS.gene51708:CDS |
| ACCTTTATCATCATGTGATG+AGG | 0.538023 | 3.4:+6784981 | MS.gene51708:CDS |
| ACAATCTTGTTATTGAGAGT+AGG | 0.541787 | 3.4:+6785115 | MS.gene51708:CDS |
| CCTTTATCATCATGTGATGA+GGG | 0.544805 | 3.4:+6784982 | MS.gene51708:CDS |
| ATGCATCCCAACGTTGATAA+CGG | 0.547251 | 3.4:+6782971 | MS.gene51708:CDS |
| CAGAATTTCTATGATCAACA+AGG | 0.550654 | 3.4:+6785832 | MS.gene51708:CDS |
| ATGAATCATGTTGTGCAAGC+TGG | 0.553031 | 3.4:+6785670 | MS.gene51708:CDS |
| TGAAGCACCGTTATCAACGT+TGG | 0.555762 | 3.4:-6782978 | None:intergenic |
| CTCATCTAAAGATGAATCGA+AGG | 0.557404 | 3.4:-6785941 | None:intergenic |
| CTTCGGAAAATCTACGCGGT+TGG | 0.564527 | 3.4:+6784353 | MS.gene51708:CDS |
| TGGTAATCACCAGCAGGAGT+AGG | 0.564794 | 3.4:-6785703 | None:intergenic |
| AATCAGATCACTATTCATGC+AGG | 0.564840 | 3.4:+6785285 | MS.gene51708:CDS |
| AAACATAGATATGACTATTG+AGG | 0.565786 | 3.4:+6783048 | MS.gene51708:CDS |
| ACTTATTGATTCTCCTAATG+TGG | 0.567478 | 3.4:+6786005 | MS.gene51708:CDS |
| TCGTTCCCTGTTGGCCACCA+TGG | 0.567749 | 3.4:-6784601 | None:intergenic |
| CAGGTACATGTTAAAGATGG+TGG | 0.568652 | 3.4:+6784264 | MS.gene51708:intron |
| TGATGATTGTCTTGGTAATG+TGG | 0.571675 | 3.4:-6785075 | None:intergenic |
| GAAGGACAAAGTAAACTTTG+AGG | 0.573836 | 3.4:+6784378 | MS.gene51708:CDS |
| GGAGGAATGCCGCTTTCCAA+AGG | 0.574058 | 3.4:-6784577 | None:intergenic |
| CTCCACCATGGTGGCCAACA+GGG | 0.575877 | 3.4:+6784596 | MS.gene51708:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.581079 | 3.4:-6784598 | None:intergenic |
| TTCAAGTTGATCAACCATGT+TGG | 0.584606 | 3.4:-6785013 | None:intergenic |
| TACCATGCAGGTAATGACTC+AGG | 0.590669 | 3.4:+6785622 | MS.gene51708:intron |
| GTGATCTGATTTGCAACAGA+AGG | 0.591015 | 3.4:-6785273 | None:intergenic |
| TGTATCAGGTAGGTCATACA+AGG | 0.591621 | 3.4:-6784494 | None:intergenic |
| AGAAAGGCTAACCAAATAGG+AGG | 0.593390 | 3.4:+6785150 | MS.gene51708:CDS |
| CATTACCAAGACAATCATCA+TGG | 0.594402 | 3.4:+6785078 | MS.gene51708:CDS |
| AGAAAACATCCTTTGGAAAG+CGG | 0.596755 | 3.4:+6784568 | MS.gene51708:CDS |
| GCTTGCTCATGTTGGTCAAG+AGG | 0.599308 | 3.4:-6785243 | None:intergenic |
| TCCAGGAGTTGGAATCATGT+TGG | 0.604429 | 3.4:-6785779 | None:intergenic |
| ACAATTGAAAAGAAAGACAA+TGG | 0.608503 | 3.4:+6783159 | MS.gene51708:CDS |
| AGGGAACGAATCATGGTGGA+AGG | 0.608968 | 3.4:+6784615 | MS.gene51708:CDS |
| GCAGGTAATGACTCAGGAGA+AGG | 0.617966 | 3.4:+6785628 | MS.gene51708:intron |
| GTACTGCAGCTTGCTCATGT+TGG | 0.618229 | 3.4:-6785251 | None:intergenic |
| AGAATTTCTATGATCAACAA+GGG | 0.625036 | 3.4:+6785833 | MS.gene51708:CDS |
| AATCTTGTTATTGAGAGTAG+GGG | 0.639924 | 3.4:+6785117 | MS.gene51708:CDS |
| TGCAAAACAAGATAACGGAA+AGG | 0.654316 | 3.4:+6783006 | MS.gene51708:CDS |
| ACAATGGCTCGTGCACAAGA+GGG | 0.658700 | 3.4:+6783175 | MS.gene51708:CDS |
| AGCTCAAAGAATCAACAACA+TGG | 0.679952 | 3.4:+6785216 | MS.gene51708:CDS |
| GCGGCATTCCTCCACCATGG+TGG | 0.682914 | 3.4:+6784587 | MS.gene51708:CDS |
| GGACAGGTACATGTTAAAGA+TGG | 0.686569 | 3.4:+6784261 | MS.gene51708:intron |
| AACCTAATATTGTATCAGGT+AGG | 0.686602 | 3.4:-6784504 | None:intergenic |
| TATGGAGTAGTACTTGACAA+TGG | 0.689392 | 3.4:+6784313 | MS.gene51708:CDS |
| GAATTTCTATGATCAACAAG+GGG | 0.696998 | 3.4:+6785834 | MS.gene51708:CDS |
| GGAAACAGATGATTATGATG+TGG | 0.698666 | 3.4:+6784933 | MS.gene51708:CDS |
| AAAGCGGCATTCCTCCACCA+TGG | 0.708484 | 3.4:+6784584 | MS.gene51708:CDS |
| TACCAAGACAATCATCATGG+AGG | 0.740488 | 3.4:+6785081 | MS.gene51708:CDS |
| GGCTCTTCGGAAAATCTACG+CGG | 0.742332 | 3.4:+6784349 | MS.gene51708:CDS |
| CAACAGGGAACGAATCATGG+TGG | 0.754137 | 3.4:+6784611 | MS.gene51708:CDS |
| TGAGGGTTCTGATACCAACA+TGG | 0.812240 | 3.4:+6784999 | MS.gene51708:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATATTAAATTTAA+AGG | - | chr3.4:6783740-6783759 | None:intergenic | 0.0% |
| !! | AAAAATTAGCATAAATTAAA+AGG | + | chr3.4:6783465-6783484 | MS.gene51708:intron | 10.0% |
| !! | GTAACTAAAAATATATTATT+GGG | - | chr3.4:6783425-6783444 | None:intergenic | 10.0% |
| !! | TAACTAAAAATATATTATTG+GGG | - | chr3.4:6783424-6783443 | None:intergenic | 10.0% |
| !! | TTTACTTCATATTAAAATTA+TGG | - | chr3.4:6784108-6784127 | None:intergenic | 10.0% |
| !!! | TCAATAGAAATAAAAATTTT+GGG | - | chr3.4:6783372-6783391 | None:intergenic | 10.0% |
| !!! | TTCAATAGAAATAAAAATTT+TGG | - | chr3.4:6783373-6783392 | None:intergenic | 10.0% |
| !! | CCTAAAAAAATATTTGTATT+TGG | + | chr3.4:6783784-6783803 | MS.gene51708:intron | 15.0% |
| !! | GGTAACTAAAAATATATTAT+TGG | - | chr3.4:6783426-6783445 | None:intergenic | 15.0% |
| !!! | CAATAGAAATAAAAATTTTG+GGG | - | chr3.4:6783371-6783390 | None:intergenic | 15.0% |
| !!! | CCAAATACAAATATTTTTTT+AGG | - | chr3.4:6783787-6783806 | None:intergenic | 15.0% |
| !!! | TACTTAAAAACTAGTTTTTA+GGG | + | chr3.4:6785441-6785460 | MS.gene51708:intron | 15.0% |
| !!! | TTACTTAAAAACTAGTTTTT+AGG | + | chr3.4:6785440-6785459 | MS.gene51708:intron | 15.0% |
| !! | AACCATTAGGTATATTAATA+TGG | + | chr3.4:6783391-6783410 | MS.gene51708:intron | 20.0% |
| !! | TATTAGTTATGAAGAAAGAT+TGG | + | chr3.4:6784843-6784862 | MS.gene51708:CDS | 20.0% |
| !! | TGTTTAATCTCTATAAAACT+AGG | - | chr3.4:6783710-6783729 | None:intergenic | 20.0% |
| !!! | ATATTTTAGTTAGTGAACTA+GGG | + | chr3.4:6783930-6783949 | MS.gene51708:intron | 20.0% |
| !!! | CCTGAAAATATTCTTTAAAA+CGG | - | chr3.4:6783311-6783330 | None:intergenic | 20.0% |
| !!! | CGTTTTAAAGAATATTTTCA+GGG | + | chr3.4:6783309-6783328 | MS.gene51708:intron | 20.0% |
| !!! | GTTTTAAAGAATATTTTCAG+GGG | + | chr3.4:6783310-6783329 | MS.gene51708:intron | 20.0% |
| !!! | TATTTTAATTCTATCTCTTG+AGG | + | chr3.4:6783843-6783862 | MS.gene51708:intron | 20.0% |
| !!! | TTTATTTCTATTGAACCATT+AGG | + | chr3.4:6783378-6783397 | MS.gene51708:intron | 20.0% |
| !!! | TTTGCAAATAAATTTGTTTG+AGG | - | chr3.4:6783447-6783466 | None:intergenic | 20.0% |
| ! | AAACATAGATATGACTATTG+AGG | + | chr3.4:6783048-6783067 | MS.gene51708:CDS | 25.0% |
| ! | AACAATGCAAAACAAGATAA+CGG | + | chr3.4:6783001-6783020 | MS.gene51708:CDS | 25.0% |
| ! | AAGTCAAAGTTCTCAAAATT+GGG | - | chr3.4:6784195-6784214 | None:intergenic | 25.0% |
| ! | ACAATTGAAAAGAAAGACAA+TGG | + | chr3.4:6783159-6783178 | MS.gene51708:CDS | 25.0% |
| ! | AGAATTTCTATGATCAACAA+GGG | + | chr3.4:6785833-6785852 | MS.gene51708:CDS | 25.0% |
| ! | AGCCATATTAATATACCTAA+TGG | - | chr3.4:6783396-6783415 | None:intergenic | 25.0% |
| ! | ATTGAACCTAATATTGTATC+AGG | - | chr3.4:6784511-6784530 | None:intergenic | 25.0% |
| ! | GAAGAATTTAAGAATGATTC+AGG | - | chr3.4:6784883-6784902 | None:intergenic | 25.0% |
| ! | GCAAAATAAATTCAATGCTA+AGG | + | chr3.4:6784798-6784817 | MS.gene51708:CDS | 25.0% |
| ! | TCAATAGTCAAACATAATAG+AGG | + | chr3.4:6783587-6783606 | MS.gene51708:intron | 25.0% |
| ! | TTCACATTGTTCTTCATATT+TGG | - | chr3.4:6784425-6784444 | None:intergenic | 25.0% |
| ! | TTCTTAAATTCTTCTTGTGT+TGG | + | chr3.4:6784889-6784908 | MS.gene51708:CDS | 25.0% |
| !! | AAAGTAAACTTTGAGGAAAA+CGG | + | chr3.4:6784385-6784404 | MS.gene51708:CDS | 25.0% |
| !! | AAGCTAGAGAAATTTTTACA+AGG | - | chr3.4:6783813-6783832 | None:intergenic | 25.0% |
| !! | AGCTAGAGAAATTTTTACAA+GGG | - | chr3.4:6783812-6783831 | None:intergenic | 25.0% |
| !!! | AAATCATGTGGTTTTTTGTA+TGG | - | chr3.4:6784679-6784698 | None:intergenic | 25.0% |
| !!! | CATATTTTAGTTAGTGAACT+AGG | + | chr3.4:6783929-6783948 | MS.gene51708:intron | 25.0% |
| !!! | CCGTTTTAAAGAATATTTTC+AGG | + | chr3.4:6783308-6783327 | MS.gene51708:intron | 25.0% |
| !!! | GGATCATTTTCAAGTTTAAT+TGG | + | chr3.4:6783897-6783916 | MS.gene51708:intron | 25.0% |
| AAAACCACATGATTTGAAGA+AGG | + | chr3.4:6784684-6784703 | MS.gene51708:CDS | 30.0% | |
| AACAACCAATTCCACATAAT+TGG | + | chr3.4:6785186-6785205 | MS.gene51708:CDS | 30.0% | |
| AACCTAATATTGTATCAGGT+AGG | - | chr3.4:6784507-6784526 | None:intergenic | 30.0% | |
| AAGTGACAATAAAACATCAC+TGG | + | chr3.4:6783135-6783154 | MS.gene51708:CDS | 30.0% | |
| ATCATTGAAGTGTAGATTTG+AGG | - | chr3.4:6785739-6785758 | None:intergenic | 30.0% | |
| ATGCATGACAAATGTAGATA+GGG | - | chr3.4:6785400-6785419 | None:intergenic | 30.0% | |
| CAAGTCAAAGTTCTCAAAAT+TGG | - | chr3.4:6784196-6784215 | None:intergenic | 30.0% | |
| CACAAAGTTATGATTTCTCT+TGG | + | chr3.4:6786031-6786050 | MS.gene51708:CDS | 30.0% | |
| CAGAATTTCTATGATCAACA+AGG | + | chr3.4:6785832-6785851 | MS.gene51708:CDS | 30.0% | |
| GAATTTCTATGATCAACAAG+GGG | + | chr3.4:6785834-6785853 | MS.gene51708:CDS | 30.0% | |
| TGAAAGTAGTTATGAGTTTG+TGG | + | chr3.4:6784912-6784931 | MS.gene51708:CDS | 30.0% | |
| TTAAACTTGAAAATGATCCC+TGG | - | chr3.4:6783896-6783915 | None:intergenic | 30.0% | |
| TTGGAAAATTTGTGTGTTGA+CGG | + | chr3.4:6784708-6784727 | MS.gene51708:CDS | 30.0% | |
| ! | AAGGAGAAGATGTTTCTATT+TGG | + | chr3.4:6785647-6785666 | MS.gene51708:CDS | 30.0% |
| ! | GCTAGAGAAATTTTTACAAG+GGG | - | chr3.4:6783811-6783830 | None:intergenic | 30.0% |
| ! | TAAAAATTTCTCTAGCTTCG+CGG | + | chr3.4:6783815-6783834 | MS.gene51708:intron | 30.0% |
| ! | TTCATCTTTAGATGAGTTGA+TGG | + | chr3.4:6785948-6785967 | MS.gene51708:CDS | 30.0% |
| ! | TTCCAAAGGATGTTTTCTTT+GGG | - | chr3.4:6784566-6784585 | None:intergenic | 30.0% |
| ! | TTTCCAAAGGATGTTTTCTT+TGG | - | chr3.4:6784567-6784586 | None:intergenic | 30.0% |
| ! | TTTTTCCTATGTAAGTAGCT+CGG | - | chr3.4:6785519-6785538 | None:intergenic | 30.0% |
| !! | AATCTTGTTATTGAGAGTAG+GGG | + | chr3.4:6785117-6785136 | MS.gene51708:CDS | 30.0% |
| !! | ACAATCTTGTTATTGAGAGT+AGG | + | chr3.4:6785115-6785134 | MS.gene51708:CDS | 30.0% |
| !! | ACTTATTGATTCTCCTAATG+TGG | + | chr3.4:6786005-6786024 | MS.gene51708:CDS | 30.0% |
| !! | AGATTTGAGGCTGAAAATTT+TGG | - | chr3.4:6785726-6785745 | None:intergenic | 30.0% |
| !! | CAATCTTGTTATTGAGAGTA+GGG | + | chr3.4:6785116-6785135 | MS.gene51708:CDS | 30.0% |
| AAAATCGCAAGTTAAAGTCC+AGG | + | chr3.4:6783875-6783894 | MS.gene51708:intron | 35.0% | |
| AAATCGCAAGTTAAAGTCCA+GGG | + | chr3.4:6783876-6783895 | MS.gene51708:intron | 35.0% | |
| AACGGAAAGGAAAAAGAAGA+AGG | + | chr3.4:6783019-6783038 | MS.gene51708:CDS | 35.0% | |
| AAGAGAAAGGCTAACCAAAT+AGG | + | chr3.4:6785147-6785166 | MS.gene51708:CDS | 35.0% | |
| AATCAGATCACTATTCATGC+AGG | + | chr3.4:6785285-6785304 | MS.gene51708:CDS | 35.0% | |
| ACATTAACGACTTCAGCATT+AGG | - | chr3.4:6785889-6785908 | None:intergenic | 35.0% | |
| ACCTTTATCATCATGTGATG+AGG | + | chr3.4:6784981-6785000 | MS.gene51708:CDS | 35.0% | |
| ACTATTCATGCAGGTAATCA+TGG | + | chr3.4:6785294-6785313 | MS.gene51708:intron | 35.0% | |
| AGCTCAAAGAATCAACAACA+TGG | + | chr3.4:6785216-6785235 | MS.gene51708:CDS | 35.0% | |
| AGGAACTAGAGACAAAGATA+TGG | + | chr3.4:6783068-6783087 | MS.gene51708:CDS | 35.0% | |
| ATGCTAAGGATACAGCTATT+TGG | + | chr3.4:6784812-6784831 | MS.gene51708:CDS | 35.0% | |
| CAAACCTTCTTCAAATCATG+TGG | - | chr3.4:6784691-6784710 | None:intergenic | 35.0% | |
| CAACTCCAATTATGTGGAAT+TGG | - | chr3.4:6785194-6785213 | None:intergenic | 35.0% | |
| CAATTCCACATAATTGGAGT+TGG | + | chr3.4:6785192-6785211 | MS.gene51708:CDS | 35.0% | |
| CACATGATTTGAAGAAGGTT+TGG | + | chr3.4:6784689-6784708 | MS.gene51708:CDS | 35.0% | |
| CATTACCAAGACAATCATCA+TGG | + | chr3.4:6785078-6785097 | MS.gene51708:CDS | 35.0% | |
| CCTTTATCATCATGTGATGA+GGG | + | chr3.4:6784982-6785001 | MS.gene51708:CDS | 35.0% | |
| CTCATCTAAAGATGAATCGA+AGG | - | chr3.4:6785944-6785963 | None:intergenic | 35.0% | |
| GAAGGAAATGGGATTTAGTA+AGG | + | chr3.4:6784633-6784652 | MS.gene51708:CDS | 35.0% | |
| GAAGGACAAAGTAAACTTTG+AGG | + | chr3.4:6784378-6784397 | MS.gene51708:CDS | 35.0% | |
| GACCTACCTGATACAATATT+AGG | + | chr3.4:6784502-6784521 | MS.gene51708:CDS | 35.0% | |
| GATGCATGACAAATGTAGAT+AGG | - | chr3.4:6785401-6785420 | None:intergenic | 35.0% | |
| GGAAACAGATGATTATGATG+TGG | + | chr3.4:6784933-6784952 | MS.gene51708:CDS | 35.0% | |
| TAACTTTGTGTTGCCACATT+AGG | - | chr3.4:6786021-6786040 | None:intergenic | 35.0% | |
| TAGAAATTCTGCTCCATTTG+AGG | - | chr3.4:6785823-6785842 | None:intergenic | 35.0% | |
| TATGGAGTAGTACTTGACAA+TGG | + | chr3.4:6784313-6784332 | MS.gene51708:CDS | 35.0% | |
| TCTCTTGGCCAAACAATATT+GGG | + | chr3.4:6786046-6786065 | MS.gene51708:CDS | 35.0% | |
| TGTGAAGTTTCAACAGTGAA+TGG | + | chr3.4:6784439-6784458 | MS.gene51708:CDS | 35.0% | |
| TTCTCTTGGCCAAACAATAT+TGG | + | chr3.4:6786045-6786064 | MS.gene51708:CDS | 35.0% | |
| ! | AGAAAACATCCTTTGGAAAG+CGG | + | chr3.4:6784568-6784587 | MS.gene51708:CDS | 35.0% |
| ! | CTCCTAATTTTCAGAAGATC+AGG | + | chr3.4:6784749-6784768 | MS.gene51708:CDS | 35.0% |
| ! | CTCCTGATCTTCTGAAAATT+AGG | - | chr3.4:6784754-6784773 | None:intergenic | 35.0% |
| ! | GTTGAGACATTTTCATGCAT+TGG | - | chr3.4:6785913-6785932 | None:intergenic | 35.0% |
| ! | TCCAAAGGATGTTTTCTTTG+GGG | - | chr3.4:6784565-6784584 | None:intergenic | 35.0% |
| ! | TCTTGATTTGATTACCATGC+AGG | + | chr3.4:6785610-6785629 | MS.gene51708:intron | 35.0% |
| !! | AAATTTTGGTAATCACCAGC+AGG | - | chr3.4:6785712-6785731 | None:intergenic | 35.0% |
| !! | TGATGATTGTCTTGGTAATG+TGG | - | chr3.4:6785078-6785097 | None:intergenic | 35.0% |
| !! | TGCAAAACAAGATAACGGAA+AGG | + | chr3.4:6783006-6783025 | MS.gene51708:CDS | 35.0% |
| !! | TTCAAGTTGATCAACCATGT+TGG | - | chr3.4:6785016-6785035 | None:intergenic | 35.0% |
| !! | TTTTGGTTAAATCCAGGAGT+TGG | - | chr3.4:6785793-6785812 | None:intergenic | 35.0% |
| !!! | GAATTTATTTTGCAAGCTCC+TGG | - | chr3.4:6784791-6784810 | None:intergenic | 35.0% |
| !!! | TCATGTGGTTTTTTGTATGG+TGG | - | chr3.4:6784676-6784695 | None:intergenic | 35.0% |
| !!! | TGCATGTTTTGGTTAAATCC+AGG | - | chr3.4:6785799-6785818 | None:intergenic | 35.0% |
| AACCTCCATGATGATTGTCT+TGG | - | chr3.4:6785086-6785105 | None:intergenic | 40.0% | |
| ACCCCAAAGAAAACATCCTT+TGG | + | chr3.4:6784561-6784580 | MS.gene51708:CDS | 40.0% | |
| AGAAAGGCTAACCAAATAGG+AGG | + | chr3.4:6785150-6785169 | MS.gene51708:CDS | 40.0% | |
| AGCTTCCAACTCCAATTATG+TGG | - | chr3.4:6785200-6785219 | None:intergenic | 40.0% | |
| ATGAATCATGTTGTGCAAGC+TGG | + | chr3.4:6785670-6785689 | MS.gene51708:CDS | 40.0% | |
| CAGGTACATGTTAAAGATGG+TGG | + | chr3.4:6784264-6784283 | MS.gene51708:intron | 40.0% | |
| CCCTCATCACATGATGATAA+AGG | - | chr3.4:6784985-6785004 | None:intergenic | 40.0% | |
| GACAATGGCAAACCAATGAT+TGG | + | chr3.4:6784328-6784347 | MS.gene51708:CDS | 40.0% | |
| GGAAAGGAAAAAGAAGAAGG+TGG | + | chr3.4:6783022-6783041 | MS.gene51708:CDS | 40.0% | |
| GGACAGGTACATGTTAAAGA+TGG | + | chr3.4:6784261-6784280 | MS.gene51708:intron | 40.0% | |
| TACCAAGACAATCATCATGG+AGG | + | chr3.4:6785081-6785100 | MS.gene51708:CDS | 40.0% | |
| TGTATCAGGTAGGTCATACA+AGG | - | chr3.4:6784497-6784516 | None:intergenic | 40.0% | |
| ! | ATGCATCCCAACGTTGATAA+CGG | + | chr3.4:6782971-6782990 | MS.gene51708:CDS | 40.0% |
| ! | CAAACCAATGATTGGCTCTT+CGG | + | chr3.4:6784336-6784355 | MS.gene51708:CDS | 40.0% |
| ! | GAATCATGGTGGAAGGAAAT+GGG | + | chr3.4:6784622-6784641 | MS.gene51708:CDS | 40.0% |
| ! | GTGATCTGATTTGCAACAGA+AGG | - | chr3.4:6785276-6785295 | None:intergenic | 40.0% |
| ! | GTGGAATTTTGTGATGTTCG+TGG | + | chr3.4:6784283-6784302 | MS.gene51708:CDS | 40.0% |
| ! | TGTTGCTTGATGAGCAAGTA+AGG | + | chr3.4:6784464-6784483 | MS.gene51708:CDS | 40.0% |
| ! | TTTTCCGAAGAGCCAATCAT+TGG | - | chr3.4:6784343-6784362 | None:intergenic | 40.0% |
| !! | AAAGGATGTTTTCTTTGGGG+TGG | - | chr3.4:6784562-6784581 | None:intergenic | 40.0% |
| !! | CGAATCCTTTTGATAGCATG+GGG | + | chr3.4:6783333-6783352 | MS.gene51708:intron | 40.0% |
| !! | GCGAATCCTTTTGATAGCAT+GGG | + | chr3.4:6783332-6783351 | MS.gene51708:intron | 40.0% |
| !! | GGAGTATTGTTAGACATTCC+AGG | + | chr3.4:6784770-6784789 | MS.gene51708:CDS | 40.0% |
| !! | GTTGGAATCATGTTGGTAAC+TGG | - | chr3.4:6785775-6785794 | None:intergenic | 40.0% |
| !! | TAGGGGTGCTAATAAGAGAA+AGG | + | chr3.4:6785134-6785153 | MS.gene51708:CDS | 40.0% |
| !!! | GTGGTTTTTTGTATGGTGGT+GGG | - | chr3.4:6784672-6784691 | None:intergenic | 40.0% |
| !!! | TGTGGTTTTTTGTATGGTGG+TGG | - | chr3.4:6784673-6784692 | None:intergenic | 40.0% |
| AACATGATTCCTACTCCTGC+TGG | + | chr3.4:6785694-6785713 | MS.gene51708:CDS | 45.0% | |
| ACAGTACATGTCAGCTCAAC+GGG | - | chr3.4:6784241-6784260 | None:intergenic | 45.0% | |
| ACCAACATGATTCCAACTCC+TGG | + | chr3.4:6785778-6785797 | MS.gene51708:CDS | 45.0% | |
| ACCAACCGAGCTACTTACAT+AGG | + | chr3.4:6785511-6785530 | MS.gene51708:intron | 45.0% | |
| CACAGTACATGTCAGCTCAA+CGG | - | chr3.4:6784242-6784261 | None:intergenic | 45.0% | |
| CCAAAACATGCAGCCTCAAA+TGG | + | chr3.4:6785807-6785826 | MS.gene51708:CDS | 45.0% | |
| GGTAGGTCATACAAGGAGTA+AGG | - | chr3.4:6784490-6784509 | None:intergenic | 45.0% | |
| GTGAACTAGGGTAAACTTGC+AGG | + | chr3.4:6783942-6783961 | MS.gene51708:intron | 45.0% | |
| TACCATGCAGGTAATGACTC+AGG | + | chr3.4:6785622-6785641 | MS.gene51708:intron | 45.0% | |
| TCATATTTGGCGATTGCAGC+TGG | - | chr3.4:6784412-6784431 | None:intergenic | 45.0% | |
| TCCAGGAGTTGGAATCATGT+TGG | - | chr3.4:6785782-6785801 | None:intergenic | 45.0% | |
| TCCTATGTAAGTAGCTCGGT+TGG | - | chr3.4:6785515-6785534 | None:intergenic | 45.0% | |
| TGCTACCCCATGCTATCAAA+AGG | - | chr3.4:6783341-6783360 | None:intergenic | 45.0% | |
| ! | CGAATCATGGTGGAAGGAAA+TGG | + | chr3.4:6784621-6784640 | MS.gene51708:CDS | 45.0% |
| ! | GTGCACAAGAGGGCATATTA+AGG | + | chr3.4:6783185-6783204 | MS.gene51708:CDS | 45.0% |
| ! | TGAGGGTTCTGATACCAACA+TGG | + | chr3.4:6784999-6785018 | MS.gene51708:CDS | 45.0% |
| ! | TGTTGCTGCTTCCTCCTATT+TGG | - | chr3.4:6785164-6785183 | None:intergenic | 45.0% |
| ! | TTGATAGCATGGGGTAGCAT+TGG | + | chr3.4:6783342-6783361 | MS.gene51708:intron | 45.0% |
| !! | CCATTTGAGGCTGCATGTTT+TGG | - | chr3.4:6785810-6785829 | None:intergenic | 45.0% |
| !! | GAAGCACCGTTATCAACGTT+GGG | - | chr3.4:6782980-6782999 | None:intergenic | 45.0% |
| !! | GGCGAATCCTTTTGATAGCA+TGG | + | chr3.4:6783331-6783350 | MS.gene51708:intron | 45.0% |
| !! | TGAAGCACCGTTATCAACGT+TGG | - | chr3.4:6782981-6783000 | None:intergenic | 45.0% |
| !!! | TTTTGTATGGTGGTGGGAGT+GGG | - | chr3.4:6784666-6784685 | None:intergenic | 45.0% |
| !!! | TTTTTGTATGGTGGTGGGAG+TGG | - | chr3.4:6784667-6784686 | None:intergenic | 45.0% |
| ACAATGGCTCGTGCACAAGA+GGG | + | chr3.4:6783175-6783194 | MS.gene51708:CDS | 50.0% | |
| AGCTGACATGTACTGTGGAC+AGG | + | chr3.4:6784245-6784264 | MS.gene51708:intron | 50.0% | |
| CAACAGGGAACGAATCATGG+TGG | + | chr3.4:6784611-6784630 | MS.gene51708:CDS | 50.0% | |
| CACCATGATTCGTTCCCTGT+TGG | - | chr3.4:6784613-6784632 | None:intergenic | 50.0% | |
| CAGTACATGTCAGCTCAACG+GGG | - | chr3.4:6784240-6784259 | None:intergenic | 50.0% | |
| CGTTGAGCTGACATGTACTG+TGG | + | chr3.4:6784240-6784259 | MS.gene51708:intron | 50.0% | |
| CTCCTGAGTCATTACCTGCA+TGG | - | chr3.4:6785627-6785646 | None:intergenic | 50.0% | |
| CTTCGGAAAATCTACGCGGT+TGG | + | chr3.4:6784353-6784372 | MS.gene51708:CDS | 50.0% | |
| GATGTTCGTGGCTTCGTCTA+TGG | + | chr3.4:6784295-6784314 | MS.gene51708:CDS | 50.0% | |
| GCAGGTAATGACTCAGGAGA+AGG | + | chr3.4:6785628-6785647 | MS.gene51708:intron | 50.0% | |
| GCTTGCTCATGTTGGTCAAG+AGG | - | chr3.4:6785246-6785265 | None:intergenic | 50.0% | |
| GGCTCTTCGGAAAATCTACG+CGG | + | chr3.4:6784349-6784368 | MS.gene51708:CDS | 50.0% | |
| TGGTAATCACCAGCAGGAGT+AGG | - | chr3.4:6785706-6785725 | None:intergenic | 50.0% | |
| ! | AGGGAACGAATCATGGTGGA+AGG | + | chr3.4:6784615-6784634 | MS.gene51708:CDS | 50.0% |
| ! | GTACTGCAGCTTGCTCATGT+TGG | - | chr3.4:6785254-6785273 | None:intergenic | 50.0% |
| !! | AAATCTACGCGGTTGGTGGA+AGG | + | chr3.4:6784360-6784379 | MS.gene51708:CDS | 50.0% |
| AAAGCGGCATTCCTCCACCA+TGG | + | chr3.4:6784584-6784603 | MS.gene51708:CDS | 55.0% | |
| CGGAAAATCTACGCGGTTGG+TGG | + | chr3.4:6784356-6784375 | MS.gene51708:CDS | 55.0% | |
| GACAATGGCTCGTGCACAAG+AGG | + | chr3.4:6783174-6783193 | MS.gene51708:CDS | 55.0% | |
| GGCCAACAGGGAACGAATCA+TGG | + | chr3.4:6784608-6784627 | MS.gene51708:CDS | 55.0% | |
| !! | GGAGGAATGCCGCTTTCCAA+AGG | - | chr3.4:6784580-6784599 | None:intergenic | 55.0% |
| CTCCACCATGGTGGCCAACA+GGG | + | chr3.4:6784596-6784615 | MS.gene51708:CDS | 60.0% | |
| TCGTTCCCTGTTGGCCACCA+TGG | - | chr3.4:6784604-6784623 | None:intergenic | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | - | chr3.4:6784601-6784620 | None:intergenic | 60.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | + | chr3.4:6784595-6784614 | MS.gene51708:CDS | 65.0% | |
| CCTGTTGGCCACCATGGTGG+AGG | - | chr3.4:6784598-6784617 | None:intergenic | 65.0% | |
| GCGGCATTCCTCCACCATGG+TGG | + | chr3.4:6784587-6784606 | MS.gene51708:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 6782971 | 6786074 | 6782971 | ID=MS.gene51708 |
| chr3.4 | mRNA | 6782971 | 6786074 | 6782971 | ID=MS.gene51708.t1;Parent=MS.gene51708 |
| chr3.4 | exon | 6782971 | 6783206 | 6782971 | ID=MS.gene51708.t1.exon1;Parent=MS.gene51708.t1 |
| chr3.4 | CDS | 6782971 | 6783206 | 6782971 | ID=cds.MS.gene51708.t1;Parent=MS.gene51708.t1 |
| chr3.4 | exon | 6784267 | 6785306 | 6784267 | ID=MS.gene51708.t1.exon2;Parent=MS.gene51708.t1 |
| chr3.4 | CDS | 6784267 | 6785306 | 6784267 | ID=cds.MS.gene51708.t1;Parent=MS.gene51708.t1 |
| chr3.4 | exon | 6785632 | 6786074 | 6785632 | ID=MS.gene51708.t1.exon3;Parent=MS.gene51708.t1 |
| chr3.4 | CDS | 6785632 | 6786074 | 6785632 | ID=cds.MS.gene51708.t1;Parent=MS.gene51708.t1 |
| Gene Sequence |
| Protein sequence |
