Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51767.t1 | AES79839.1 | 94.8 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 5.50E-188 | 666.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51767.t1 | Q5CCK4 | 44.1 | 363 | 154 | 8 | 24 | 342 | 203 | 560 | 1.9e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51767.t1 | G7KY51 | 94.8 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 4.0e-188 | 666.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51767.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51767.t1 | MTR_7g073240 | 94.783 | 345 | 17 | 1 | 1 | 344 | 17 | 361 | 0.0 | 681 |
| MS.gene51767.t1 | MTR_4g028130 | 50.000 | 380 | 148 | 6 | 1 | 342 | 213 | 588 | 4.23e-113 | 348 |
| MS.gene51767.t1 | MTR_4g028130 | 44.819 | 415 | 153 | 8 | 1 | 342 | 213 | 624 | 6.04e-103 | 316 |
| MS.gene51767.t1 | MTR_4g028130 | 44.819 | 415 | 153 | 8 | 1 | 342 | 213 | 624 | 4.47e-101 | 318 |
| MS.gene51767.t1 | MTR_2g011940 | 43.934 | 305 | 135 | 4 | 73 | 341 | 320 | 624 | 2.55e-77 | 249 |
| MS.gene51767.t1 | MTR_2g011940 | 43.934 | 305 | 135 | 4 | 73 | 341 | 320 | 624 | 5.37e-77 | 249 |
| MS.gene51767.t1 | MTR_2g011940 | 44.262 | 305 | 134 | 5 | 73 | 341 | 311 | 615 | 5.05e-76 | 251 |
| MS.gene51767.t1 | MTR_3g467380 | 49.302 | 215 | 98 | 7 | 1 | 209 | 233 | 442 | 4.55e-55 | 193 |
| MS.gene51767.t1 | MTR_3g467380 | 51.969 | 127 | 48 | 2 | 229 | 342 | 522 | 648 | 1.71e-32 | 128 |
| MS.gene51767.t1 | MTR_5g075410 | 49.730 | 185 | 88 | 3 | 36 | 219 | 254 | 434 | 5.29e-52 | 184 |
| MS.gene51767.t1 | MTR_5g075410 | 56.944 | 72 | 30 | 1 | 231 | 301 | 507 | 578 | 2.04e-17 | 84.0 |
| MS.gene51767.t1 | MTR_7g083700 | 38.835 | 103 | 62 | 1 | 105 | 206 | 126 | 228 | 3.14e-17 | 81.6 |
| MS.gene51767.t1 | MTR_7g059330 | 39.216 | 102 | 60 | 2 | 105 | 204 | 623 | 724 | 1.79e-16 | 80.9 |
| MS.gene51767.t1 | MTR_1g058350 | 38.298 | 141 | 65 | 7 | 82 | 208 | 50 | 182 | 1.84e-16 | 79.3 |
| MS.gene51767.t1 | MTR_8g023990 | 40.000 | 110 | 56 | 5 | 105 | 207 | 171 | 277 | 2.30e-14 | 74.3 |
| MS.gene51767.t1 | MTR_7g105370 | 41.905 | 105 | 54 | 5 | 110 | 210 | 65 | 166 | 5.27e-14 | 72.0 |
| MS.gene51767.t1 | MTR_7g117455 | 40.659 | 91 | 49 | 3 | 105 | 192 | 117 | 205 | 2.28e-13 | 71.2 |
| MS.gene51767.t1 | MTR_5g053920 | 38.053 | 113 | 56 | 5 | 104 | 204 | 193 | 303 | 7.94e-13 | 69.3 |
| MS.gene51767.t1 | MTR_1g093600 | 34.641 | 153 | 69 | 7 | 92 | 215 | 168 | 318 | 2.29e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51767.t1 | AT4G32010 | 44.568 | 359 | 154 | 7 | 24 | 342 | 203 | 556 | 2.20e-89 | 284 |
| MS.gene51767.t1 | AT4G32010 | 44.077 | 363 | 154 | 8 | 24 | 342 | 203 | 560 | 1.91e-87 | 279 |
| MS.gene51767.t1 | AT2G30470 | 45.201 | 323 | 123 | 5 | 73 | 342 | 262 | 583 | 7.01e-80 | 259 |
| MS.gene51767.t1 | AT4G21550 | 38.545 | 275 | 154 | 6 | 38 | 299 | 254 | 526 | 1.64e-49 | 174 |
| MS.gene51767.t1 | AT4G21550 | 40.000 | 280 | 147 | 7 | 38 | 301 | 254 | 528 | 3.59e-44 | 161 |
| MS.gene51767.t1 | AT4G21550 | 37.879 | 264 | 143 | 7 | 38 | 285 | 254 | 512 | 1.27e-43 | 157 |
| MS.gene51767.t1 | AT3G26790 | 40.385 | 104 | 61 | 1 | 105 | 207 | 91 | 194 | 3.19e-18 | 84.3 |
| MS.gene51767.t1 | AT3G24650 | 38.211 | 123 | 74 | 2 | 105 | 225 | 571 | 693 | 1.36e-17 | 84.3 |
| MS.gene51767.t1 | AT1G28300 | 39.669 | 121 | 69 | 3 | 72 | 189 | 136 | 255 | 3.17e-17 | 82.0 |
| MS.gene51767.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 9.91e-17 | 79.7 |
| MS.gene51767.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.13e-16 | 79.3 |
| MS.gene51767.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.13e-16 | 79.7 |
| MS.gene51767.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.21e-16 | 79.3 |
| MS.gene51767.t1 | AT5G06250 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 1.48e-16 | 79.0 |
| MS.gene51767.t1 | AT1G13260 | 38.983 | 118 | 65 | 5 | 104 | 216 | 186 | 301 | 4.69e-16 | 78.6 |
| MS.gene51767.t1 | AT3G25730 | 37.815 | 119 | 65 | 5 | 105 | 216 | 182 | 298 | 1.53e-15 | 77.0 |
| MS.gene51767.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.33e-15 | 74.3 |
| MS.gene51767.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.80e-15 | 74.3 |
| MS.gene51767.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.95e-15 | 72.8 |
| MS.gene51767.t1 | AT2G36080 | 41.667 | 108 | 54 | 4 | 105 | 205 | 37 | 142 | 3.95e-15 | 72.8 |
| MS.gene51767.t1 | AT1G68840 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.76e-14 | 73.6 |
| MS.gene51767.t1 | AT1G68840 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 2.76e-14 | 73.6 |
| MS.gene51767.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.23e-14 | 71.2 |
| MS.gene51767.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.23e-14 | 71.2 |
| MS.gene51767.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 4.23e-14 | 71.2 |
| MS.gene51767.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 7.33e-14 | 71.2 |
| MS.gene51767.t1 | AT2G46870 | 38.889 | 108 | 57 | 5 | 105 | 205 | 34 | 139 | 8.65e-14 | 71.6 |
| MS.gene51767.t1 | AT1G01030 | 33.588 | 131 | 72 | 5 | 105 | 222 | 55 | 183 | 7.22e-13 | 68.9 |
| MS.gene51767.t1 | AT3G11580 | 39.316 | 117 | 52 | 5 | 105 | 205 | 28 | 141 | 9.78e-13 | 68.9 |
| MS.gene51767.t1 | AT3G61970 | 37.037 | 108 | 59 | 4 | 105 | 205 | 22 | 127 | 1.46e-12 | 67.8 |
| MS.gene51767.t1 | AT1G25560 | 37.931 | 116 | 58 | 5 | 105 | 208 | 194 | 307 | 2.34e-12 | 67.8 |
| MS.gene51767.t1 | AT4G01500 | 39.326 | 89 | 51 | 2 | 105 | 192 | 35 | 121 | 2.61e-12 | 67.4 |
| MS.gene51767.t1 | AT1G01030 | 37.288 | 118 | 64 | 5 | 105 | 214 | 55 | 170 | 2.70e-12 | 67.4 |
Find 77 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATCTGTGGAGAATTTA+TGG | 0.154338 | 7.3:+31657042 | MS.gene51767:CDS |
| CAATTGCAAGTTGGAGATTT+TGG | 0.162855 | 7.3:+31655522 | MS.gene51767:CDS |
| TATATCCTGCTGCTATTATT+TGG | 0.179530 | 7.3:-31655462 | None:intergenic |
| TGGTGTTTAAATTTAGATTT+TGG | 0.182651 | 7.3:+31655439 | MS.gene51767:CDS |
| CTTACTTCAACACATGATTT+TGG | 0.195081 | 7.3:-31655251 | None:intergenic |
| TGTTTCCTTTGTCGTCTTAC+AGG | 0.195568 | 7.3:-31654819 | None:intergenic |
| AAGAAGGGTATATTCATAAA+TGG | 0.214466 | 7.3:+31656610 | MS.gene51767:CDS |
| ATGACCTTTAATACTCCTTT+TGG | 0.228375 | 7.3:+31654612 | MS.gene51767:CDS |
| GGCTCTCCCTCTGAGAGATT+TGG | 0.271633 | 7.3:-31654690 | None:intergenic |
| AATTCTTGATCGGTAATCTT+AGG | 0.277029 | 7.3:-31654861 | None:intergenic |
| ATTTCCAAAAGGAGTATTAA+AGG | 0.297494 | 7.3:-31654616 | None:intergenic |
| CATTGATGCTGGAACTTACT+TGG | 0.314019 | 7.3:+31656151 | MS.gene51767:CDS |
| ATATCACTGTCTTCAATTCA+TGG | 0.371160 | 7.3:-31657184 | None:intergenic |
| TTCCTTGCGACATGATGAAT+TGG | 0.372803 | 7.3:-31654792 | None:intergenic |
| TTTGGAAATTCAAATTCCTT+TGG | 0.374583 | 7.3:+31654630 | MS.gene51767:CDS |
| ATACCCTTCTTTGCAATGAT+AGG | 0.386942 | 7.3:-31656598 | None:intergenic |
| AATTTGCAGTAACATTTAAC+CGG | 0.402045 | 7.3:+31655690 | MS.gene51767:intron |
| CTCAATAGCAAGAGTTGACT+TGG | 0.413822 | 7.3:-31654742 | None:intergenic |
| TTCAAACATTGTGGTGATTG+AGG | 0.415224 | 7.3:+31656215 | MS.gene51767:CDS |
| GGGATCTGTGGAGAATTTAT+GGG | 0.418012 | 7.3:+31657043 | MS.gene51767:CDS |
| TGCTCAGAATGGAGAAAGTT+GGG | 0.421979 | 7.3:+31657023 | MS.gene51767:CDS |
| TGCAAAAGATTCTGAGACTT+AGG | 0.426953 | 7.3:-31654711 | None:intergenic |
| AGACGTGAAAGGGAAGAAAT+TGG | 0.434182 | 7.3:+31655419 | MS.gene51767:CDS |
| GGAAATTCAAATTCCTTTGG+TGG | 0.453203 | 7.3:+31654633 | MS.gene51767:CDS |
| AGAAGGGTATATTCATAAAT+GGG | 0.456876 | 7.3:+31656611 | MS.gene51767:CDS |
| GTGCTCAGAATGGAGAAAGT+TGG | 0.457967 | 7.3:+31657022 | MS.gene51767:CDS |
| TACAAATCGAAGACGTGAAA+GGG | 0.459274 | 7.3:+31655409 | MS.gene51767:CDS |
| GTTAATGTCTTCTCGAATAG+TGG | 0.460753 | 7.3:-31655191 | None:intergenic |
| AATAACATTGCTATGTCTAA+AGG | 0.470824 | 7.3:+31656018 | MS.gene51767:CDS |
| ACAATGTTTGAATTAACTGT+TGG | 0.478449 | 7.3:-31656204 | None:intergenic |
| AAGGAATTTGAATTTCCAAA+AGG | 0.480284 | 7.3:-31654627 | None:intergenic |
| GCTAGTGATGTTGGTCGACT+TGG | 0.492614 | 7.3:+31655215 | MS.gene51767:CDS |
| ACCTCCTATCATTGCAAAGA+AGG | 0.496773 | 7.3:+31656594 | MS.gene51767:CDS |
| CCCTTCTTTGCAATGATAGG+AGG | 0.497014 | 7.3:-31656595 | None:intergenic |
| TGCAGTAACATTTAACCGGA+TGG | 0.497340 | 7.3:+31655694 | MS.gene51767:intron |
| AACTGATAATAGGGTTTCGA+AGG | 0.500618 | 7.3:+31655729 | MS.gene51767:CDS |
| TGTTGGTCGACTTGGTCGCA+TGG | 0.503887 | 7.3:+31655223 | MS.gene51767:CDS |
| GGCATCGGCTTCTTCTATAC+AGG | 0.506593 | 7.3:+31655751 | MS.gene51767:CDS |
| CCTATTATCAGTTTCTCCCC+CGG | 0.509156 | 7.3:-31655719 | None:intergenic |
| TTTCCACCTATTTCGGAACC+AGG | 0.514336 | 7.3:+31655375 | MS.gene51767:CDS |
| AACATTTAACCGGATGGACC+CGG | 0.514859 | 7.3:+31655700 | MS.gene51767:CDS |
| TTTGGCCAAATAATAGCAGC+AGG | 0.517585 | 7.3:+31655457 | MS.gene51767:CDS |
| TATCACTGTCTTCAATTCAT+GGG | 0.523152 | 7.3:-31657183 | None:intergenic |
| TAAAGTAATGGATACTCTCC+AGG | 0.525071 | 7.3:-31654894 | None:intergenic |
| ATTGATGCTGGAACTTACTT+GGG | 0.528064 | 7.3:+31656152 | MS.gene51767:CDS |
| ATGGAGAAAGTTGGGATCTG+TGG | 0.531161 | 7.3:+31657031 | MS.gene51767:CDS |
| AATAGGGTTTCGAAGGGCAT+CGG | 0.532282 | 7.3:+31655736 | MS.gene51767:CDS |
| ATGTTTGAATTAACTGTTGG+AGG | 0.534643 | 7.3:-31656201 | None:intergenic |
| CAGTCTATGCAATTGCAAGT+TGG | 0.537113 | 7.3:+31655513 | MS.gene51767:CDS |
| TAATTGTTGTAATTCTTGAT+CGG | 0.538634 | 7.3:-31654871 | None:intergenic |
| CAAGAATTACAACAATTACC+TGG | 0.540284 | 7.3:+31654876 | MS.gene51767:CDS |
| ACATTAACTGCTAGTGATGT+TGG | 0.541192 | 7.3:+31655206 | MS.gene51767:CDS |
| TTCCACCTATTTCGGAACCA+GGG | 0.543683 | 7.3:+31655376 | MS.gene51767:CDS |
| TAACAAAGAAGCATTGATGC+TGG | 0.545646 | 7.3:+31656140 | MS.gene51767:CDS |
| AGAATTTATGGGGTCAAAGA+AGG | 0.549360 | 7.3:+31657054 | MS.gene51767:CDS |
| TTTGAATTAACTGTTGGAGG+TGG | 0.549434 | 7.3:-31656198 | None:intergenic |
| ACATTTAACCGGATGGACCC+GGG | 0.549810 | 7.3:+31655701 | MS.gene51767:CDS |
| TTACAAATCGAAGACGTGAA+AGG | 0.557247 | 7.3:+31655408 | MS.gene51767:CDS |
| AACAGTTAATTCAAACATTG+TGG | 0.562770 | 7.3:+31656206 | MS.gene51767:CDS |
| TTCAATTCCAAATCTCTCAG+AGG | 0.562873 | 7.3:+31654683 | MS.gene51767:CDS |
| CCTCCTATCATTGCAAAGAA+GGG | 0.572822 | 7.3:+31656595 | MS.gene51767:CDS |
| TCAATTCCAAATCTCTCAGA+GGG | 0.577689 | 7.3:+31654684 | MS.gene51767:CDS |
| TTAGGAACTACTAGCTCTTG+TGG | 0.580404 | 7.3:-31656066 | None:intergenic |
| AATTCAAATTCCTTTGGTGG+TGG | 0.581836 | 7.3:+31654636 | MS.gene51767:CDS |
| CTCCAATTCATCATGTCGCA+AGG | 0.583526 | 7.3:+31654790 | MS.gene51767:CDS |
| CTCGAATAGTGGCACAATGG+CGG | 0.604126 | 7.3:-31655180 | None:intergenic |
| TCCACCTATTTCGGAACCAG+GGG | 0.606854 | 7.3:+31655377 | MS.gene51767:CDS |
| ACAACAGGATGAACGAGCAA+TGG | 0.610776 | 7.3:+31656985 | MS.gene51767:intron |
| AGTGTGATAAGTGCTCAGAA+TGG | 0.614321 | 7.3:+31657012 | MS.gene51767:CDS |
| CATTTAACCGGATGGACCCG+GGG | 0.615232 | 7.3:+31655702 | MS.gene51767:CDS |
| GGATCTGTGGAGAATTTATG+GGG | 0.621372 | 7.3:+31657044 | MS.gene51767:CDS |
| ACTGATAATAGGGTTTCGAA+GGG | 0.642961 | 7.3:+31655730 | MS.gene51767:CDS |
| TCAATAGCAAGAGTTGACTT+GGG | 0.655637 | 7.3:-31654741 | None:intergenic |
| AATCGCCTGTAAGACGACAA+AGG | 0.682009 | 7.3:+31654814 | MS.gene51767:CDS |
| CTTCTCGAATAGTGGCACAA+TGG | 0.682280 | 7.3:-31655183 | None:intergenic |
| CCACCTATTTCGGAACCAGG+GGG | 0.686812 | 7.3:+31655378 | MS.gene51767:CDS |
| ATTTAACCGGATGGACCCGG+GGG | 0.732920 | 7.3:+31655703 | MS.gene51767:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATATAAAATAAAATG+AGG | - | chr7.3:31655077-31655096 | None:intergenic | 10.0% |
| !! | ATTTACATAAATACAAAAAT+AGG | - | chr7.3:31655981-31656000 | None:intergenic | 10.0% |
| !!! | AAAACGATAAATTTTTTTAT+AGG | - | chr7.3:31656729-31656748 | None:intergenic | 10.0% |
| !!! | AAACGATAAATTTTTTTATA+GGG | - | chr7.3:31656728-31656747 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAAGATGTTTTAT+CGG | + | chr7.3:31656533-31656552 | MS.gene51767:intron | 10.0% |
| !!! | TTTTTATGAAATTCTTTATT+TGG | + | chr7.3:31656296-31656315 | MS.gene51767:intron | 10.0% |
| !! | AAAGATTTATCATCAAATAT+TGG | - | chr7.3:31655310-31655329 | None:intergenic | 15.0% |
| !!! | GTCATAAAGAAAATATATTT+TGG | - | chr7.3:31656934-31656953 | None:intergenic | 15.0% |
| !!! | TTTACTAAACTTTTCATTAT+AGG | + | chr7.3:31654913-31654932 | MS.gene51767:intron | 15.0% |
| !! | GTATATGAAAAAAGTAACAT+TGG | - | chr7.3:31655598-31655617 | None:intergenic | 20.0% |
| !! | TAATTGTTGTAATTCTTGAT+CGG | - | chr7.3:31654874-31654893 | None:intergenic | 20.0% |
| !! | TGAAAAGTTTAGTAAAGTAA+TGG | - | chr7.3:31654909-31654928 | None:intergenic | 20.0% |
| !! | TTATACAACAGTAAATTGAA+CGG | - | chr7.3:31655003-31655022 | None:intergenic | 20.0% |
| !! | TTCATCAAAATAAACTTTAG+AGG | + | chr7.3:31656346-31656365 | MS.gene51767:intron | 20.0% |
| !!! | ACTGCAAATTTTTTTGTAAA+AGG | - | chr7.3:31655680-31655699 | None:intergenic | 20.0% |
| !!! | CAAAAGTTCATAATTTTGTA+AGG | - | chr7.3:31656697-31656716 | None:intergenic | 20.0% |
| !!! | TAAACTTTAGAGGAATAATA+TGG | + | chr7.3:31656356-31656375 | MS.gene51767:intron | 20.0% |
| !!! | TCGACATATTTAAAATAACA+AGG | + | chr7.3:31656756-31656775 | MS.gene51767:intron | 20.0% |
| !!! | TGGTGTTTAAATTTAGATTT+TGG | + | chr7.3:31655439-31655458 | MS.gene51767:CDS | 20.0% |
| !!! | TTATGTATATTTCTATCCAT+AGG | - | chr7.3:31655651-31655670 | None:intergenic | 20.0% |
| !!! | TTGTTATTTTAAATATGTCG+AGG | - | chr7.3:31656757-31656776 | None:intergenic | 20.0% |
| ! | AACAGTTAATTCAAACATTG+TGG | + | chr7.3:31656206-31656225 | MS.gene51767:CDS | 25.0% |
| ! | AAGGAATTTGAATTTCCAAA+AGG | - | chr7.3:31654630-31654649 | None:intergenic | 25.0% |
| ! | AATAACATTGCTATGTCTAA+AGG | + | chr7.3:31656018-31656037 | MS.gene51767:CDS | 25.0% |
| ! | AATTTGCAGTAACATTTAAC+CGG | + | chr7.3:31655690-31655709 | MS.gene51767:intron | 25.0% |
| ! | ACAATGTTTGAATTAACTGT+TGG | - | chr7.3:31656207-31656226 | None:intergenic | 25.0% |
| ! | TAGTCCTCAAAGATATAATA+TGG | - | chr7.3:31656325-31656344 | None:intergenic | 25.0% |
| ! | TTATTATTTCACTGTCATGT+AGG | + | chr7.3:31655619-31655638 | MS.gene51767:intron | 25.0% |
| ! | TTTGGAAATTCAAATTCCTT+TGG | + | chr7.3:31654630-31654649 | MS.gene51767:CDS | 25.0% |
| !! | AAAACACCTTTTATAAGATC+AGG | - | chr7.3:31656811-31656830 | None:intergenic | 25.0% |
| !! | AAACACCTTTTATAAGATCA+GGG | - | chr7.3:31656810-31656829 | None:intergenic | 25.0% |
| !! | AAGAAGGGTATATTCATAAA+TGG | + | chr7.3:31656610-31656629 | MS.gene51767:CDS | 25.0% |
| !! | AGAAGGGTATATTCATAAAT+GGG | + | chr7.3:31656611-31656630 | MS.gene51767:CDS | 25.0% |
| !! | ATGGTGACATTTCAATTTTA+AGG | + | chr7.3:31656375-31656394 | MS.gene51767:intron | 25.0% |
| !! | TAAAATTGAAGCACTCAATA+TGG | - | chr7.3:31656506-31656525 | None:intergenic | 25.0% |
| !! | TTTAAGCTTTAACACATCAT+TGG | - | chr7.3:31655158-31655177 | None:intergenic | 25.0% |
| !!! | ATTTCCAAAAGGAGTATTAA+AGG | - | chr7.3:31654619-31654638 | None:intergenic | 25.0% |
| !!! | CATATGTCTAATTTGTTCTA+TGG | + | chr7.3:31655935-31655954 | MS.gene51767:intron | 25.0% |
| !!! | GTTAACAAATCTTGTTTTCA+AGG | + | chr7.3:31657116-31657135 | MS.gene51767:intron | 25.0% |
| !!! | TAATTTGTTAGAACTGAAAG+TGG | + | chr7.3:31655333-31655352 | MS.gene51767:intron | 25.0% |
| AATTCTTGATCGGTAATCTT+AGG | - | chr7.3:31654864-31654883 | None:intergenic | 30.0% | |
| ATGTTTGAATTAACTGTTGG+AGG | - | chr7.3:31656204-31656223 | None:intergenic | 30.0% | |
| ATTTGTAAATAAATACCCCC+TGG | - | chr7.3:31655396-31655415 | None:intergenic | 30.0% | |
| CAAGAATTACAACAATTACC+TGG | + | chr7.3:31654876-31654895 | MS.gene51767:CDS | 30.0% | |
| GAATGTTTGCTCAAAATCTA+TGG | + | chr7.3:31656466-31656485 | MS.gene51767:intron | 30.0% | |
| GACTATACTAAAATTGTTGC+AGG | + | chr7.3:31656570-31656589 | MS.gene51767:intron | 30.0% | |
| GTGACCATATTATATCTTTG+AGG | + | chr7.3:31656318-31656337 | MS.gene51767:intron | 30.0% | |
| GTTTGTATGATTAGTACTCT+TGG | + | chr7.3:31655109-31655128 | MS.gene51767:intron | 30.0% | |
| TATATCCTGCTGCTATTATT+TGG | - | chr7.3:31655465-31655484 | None:intergenic | 30.0% | |
| TGTGTAAGATTGCAAAAATG+TGG | + | chr7.3:31655807-31655826 | MS.gene51767:intron | 30.0% | |
| ! | AATTGCTATTGAACTATGAG+TGG | - | chr7.3:31655561-31655580 | None:intergenic | 30.0% |
| ! | ATGACCTTTAATACTCCTTT+TGG | + | chr7.3:31654612-31654631 | MS.gene51767:CDS | 30.0% |
| ! | ATTCTGCTATGTGTTATTAG+AGG | + | chr7.3:31655862-31655881 | MS.gene51767:intron | 30.0% |
| ! | CTTACTTCAACACATGATTT+TGG | - | chr7.3:31655254-31655273 | None:intergenic | 30.0% |
| ! | CTTTAACACATCATTGGTTA+TGG | - | chr7.3:31655152-31655171 | None:intergenic | 30.0% |
| ! | GACATATTTTCCACCTATTT+CGG | + | chr7.3:31655368-31655387 | MS.gene51767:intron | 30.0% |
| ! | TAGGTCAAATGTTTTATGCT+AGG | + | chr7.3:31654932-31654951 | MS.gene51767:intron | 30.0% |
| ! | TCACATGTTCTTTTCTTCTT+AGG | - | chr7.3:31656087-31656106 | None:intergenic | 30.0% |
| ! | TTTTGAGCAAACATTCAATG+TGG | - | chr7.3:31656462-31656481 | None:intergenic | 30.0% |
| !! | AGCAGGATATATGTTTTAGA+AGG | + | chr7.3:31655474-31655493 | MS.gene51767:CDS | 30.0% |
| !! | ATTAGTAGTTTAGCTTGACA+TGG | - | chr7.3:31656904-31656923 | None:intergenic | 30.0% |
| AACTGATAATAGGGTTTCGA+AGG | + | chr7.3:31655729-31655748 | MS.gene51767:CDS | 35.0% | |
| AATTCAAATTCCTTTGGTGG+TGG | + | chr7.3:31654636-31654655 | MS.gene51767:CDS | 35.0% | |
| ACATAGCAATGTTATTCACC+TGG | - | chr7.3:31656014-31656033 | None:intergenic | 35.0% | |
| ACATTAACTGCTAGTGATGT+TGG | + | chr7.3:31655206-31655225 | MS.gene51767:CDS | 35.0% | |
| ACTGATAATAGGGTTTCGAA+GGG | + | chr7.3:31655730-31655749 | MS.gene51767:CDS | 35.0% | |
| AGAATTTATGGGGTCAAAGA+AGG | + | chr7.3:31657054-31657073 | MS.gene51767:CDS | 35.0% | |
| ATACCCTTCTTTGCAATGAT+AGG | - | chr7.3:31656601-31656620 | None:intergenic | 35.0% | |
| ATGTAAATTTCTTTCCCACC+AGG | + | chr7.3:31655993-31656012 | MS.gene51767:intron | 35.0% | |
| ATTGATGCTGGAACTTACTT+GGG | + | chr7.3:31656152-31656171 | MS.gene51767:CDS | 35.0% | |
| GGAAATTCAAATTCCTTTGG+TGG | + | chr7.3:31654633-31654652 | MS.gene51767:CDS | 35.0% | |
| GTTAATGTCTTCTCGAATAG+TGG | - | chr7.3:31655194-31655213 | None:intergenic | 35.0% | |
| TACAAATCGAAGACGTGAAA+GGG | + | chr7.3:31655409-31655428 | MS.gene51767:CDS | 35.0% | |
| TCAATTCCAAATCTCTCAGA+GGG | + | chr7.3:31654684-31654703 | MS.gene51767:CDS | 35.0% | |
| TGTGACAATGCTCTAATCAT+TGG | + | chr7.3:31656432-31656451 | MS.gene51767:intron | 35.0% | |
| TGTTTGCTCAAAATCTATGG+AGG | + | chr7.3:31656469-31656488 | MS.gene51767:intron | 35.0% | |
| TTACAAATCGAAGACGTGAA+AGG | + | chr7.3:31655408-31655427 | MS.gene51767:CDS | 35.0% | |
| TTCAAACATTGTGGTGATTG+AGG | + | chr7.3:31656215-31656234 | MS.gene51767:CDS | 35.0% | |
| TTCAATTCCAAATCTCTCAG+AGG | + | chr7.3:31654683-31654702 | MS.gene51767:CDS | 35.0% | |
| TTGCATTGTGATTGAACAAC+AGG | + | chr7.3:31656970-31656989 | MS.gene51767:intron | 35.0% | |
| TTTGAATTAACTGTTGGAGG+TGG | - | chr7.3:31656201-31656220 | None:intergenic | 35.0% | |
| ! | TCAATAGCAAGAGTTGACTT+GGG | - | chr7.3:31654744-31654763 | None:intergenic | 35.0% |
| !! | CAATTGCAAGTTGGAGATTT+TGG | + | chr7.3:31655522-31655541 | MS.gene51767:CDS | 35.0% |
| !! | TAAAGTAATGGATACTCTCC+AGG | - | chr7.3:31654897-31654916 | None:intergenic | 35.0% |
| !! | TAACAAAGAAGCATTGATGC+TGG | + | chr7.3:31656140-31656159 | MS.gene51767:CDS | 35.0% |
| !! | TGCAAAAGATTCTGAGACTT+AGG | - | chr7.3:31654714-31654733 | None:intergenic | 35.0% |
| !! | TTTTAGAAGGAGTACATGCT+TGG | + | chr7.3:31655487-31655506 | MS.gene51767:CDS | 35.0% |
| ACCTCCTATCATTGCAAAGA+AGG | + | chr7.3:31656594-31656613 | MS.gene51767:CDS | 40.0% | |
| AGACGTGAAAGGGAAGAAAT+TGG | + | chr7.3:31655419-31655438 | MS.gene51767:CDS | 40.0% | |
| AGCAATGTTATTCACCTGGT+GGG | - | chr7.3:31656010-31656029 | None:intergenic | 40.0% | |
| AGTGTGATAAGTGCTCAGAA+TGG | + | chr7.3:31657012-31657031 | MS.gene51767:CDS | 40.0% | |
| CAGCACCCTGATCTTATAAA+AGG | + | chr7.3:31656802-31656821 | MS.gene51767:intron | 40.0% | |
| CAGTCTATGCAATTGCAAGT+TGG | + | chr7.3:31655513-31655532 | MS.gene51767:CDS | 40.0% | |
| CATTGATGCTGGAACTTACT+TGG | + | chr7.3:31656151-31656170 | MS.gene51767:CDS | 40.0% | |
| CCTCCTATCATTGCAAAGAA+GGG | + | chr7.3:31656595-31656614 | MS.gene51767:CDS | 40.0% | |
| CTCAATAGCAAGAGTTGACT+TGG | - | chr7.3:31654745-31654764 | None:intergenic | 40.0% | |
| GACAATGCTCTAATCATTGG+AGG | + | chr7.3:31656435-31656454 | MS.gene51767:intron | 40.0% | |
| GGATCTGTGGAGAATTTATG+GGG | + | chr7.3:31657044-31657063 | MS.gene51767:CDS | 40.0% | |
| GGGATCTGTGGAGAATTTAT+GGG | + | chr7.3:31657043-31657062 | MS.gene51767:CDS | 40.0% | |
| GTCAGAGAAAAATGTGTGCA+TGG | + | chr7.3:31654764-31654783 | MS.gene51767:CDS | 40.0% | |
| TAGCAATGTTATTCACCTGG+TGG | - | chr7.3:31656011-31656030 | None:intergenic | 40.0% | |
| TGCAGTAACATTTAACCGGA+TGG | + | chr7.3:31655694-31655713 | MS.gene51767:intron | 40.0% | |
| TGCTCAGAATGGAGAAAGTT+GGG | + | chr7.3:31657023-31657042 | MS.gene51767:CDS | 40.0% | |
| TGGGATCTGTGGAGAATTTA+TGG | + | chr7.3:31657042-31657061 | MS.gene51767:CDS | 40.0% | |
| TGTCTCACAGTAGGAACTAT+AGG | - | chr7.3:31656784-31656803 | None:intergenic | 40.0% | |
| TGTTTCCTTTGTCGTCTTAC+AGG | - | chr7.3:31654822-31654841 | None:intergenic | 40.0% | |
| TTCCTTGCGACATGATGAAT+TGG | - | chr7.3:31654795-31654814 | None:intergenic | 40.0% | |
| TTTGGCCAAATAATAGCAGC+AGG | + | chr7.3:31655457-31655476 | MS.gene51767:CDS | 40.0% | |
| ! | AGCTTTTCTATGCTGTCATC+AGG | + | chr7.3:31657145-31657164 | MS.gene51767:intron | 40.0% |
| ! | TTAGGAACTACTAGCTCTTG+TGG | - | chr7.3:31656069-31656088 | None:intergenic | 40.0% |
| AACATTTAACCGGATGGACC+CGG | + | chr7.3:31655700-31655719 | MS.gene51767:CDS | 45.0% | |
| AATCGCCTGTAAGACGACAA+AGG | + | chr7.3:31654814-31654833 | MS.gene51767:CDS | 45.0% | |
| ACAACAGGATGAACGAGCAA+TGG | + | chr7.3:31656985-31657004 | MS.gene51767:intron | 45.0% | |
| ATGGAGAAAGTTGGGATCTG+TGG | + | chr7.3:31657031-31657050 | MS.gene51767:CDS | 45.0% | |
| CCCTTCTTTGCAATGATAGG+AGG | - | chr7.3:31656598-31656617 | None:intergenic | 45.0% | |
| CCTATTATCAGTTTCTCCCC+CGG | - | chr7.3:31655722-31655741 | None:intergenic | 45.0% | |
| CGGGGGAGAAACTGATAATA+GGG | + | chr7.3:31655720-31655739 | MS.gene51767:CDS | 45.0% | |
| CTATTATCAGTTTCTCCCCC+GGG | - | chr7.3:31655721-31655740 | None:intergenic | 45.0% | |
| CTCCAATTCATCATGTCGCA+AGG | + | chr7.3:31654790-31654809 | MS.gene51767:CDS | 45.0% | |
| CTTCTCGAATAGTGGCACAA+TGG | - | chr7.3:31655186-31655205 | None:intergenic | 45.0% | |
| GTCATGTAGGCTCAAACCTA+TGG | + | chr7.3:31655632-31655651 | MS.gene51767:intron | 45.0% | |
| GTGCTCAGAATGGAGAAAGT+TGG | + | chr7.3:31657022-31657041 | MS.gene51767:CDS | 45.0% | |
| TTCCACCTATTTCGGAACCA+GGG | + | chr7.3:31655376-31655395 | MS.gene51767:CDS | 45.0% | |
| TTTCCACCTATTTCGGAACC+AGG | + | chr7.3:31655375-31655394 | MS.gene51767:CDS | 45.0% | |
| ! | AATAGGGTTTCGAAGGGCAT+CGG | + | chr7.3:31655736-31655755 | MS.gene51767:CDS | 45.0% |
| !! | TTGCTTTTCACCACCACCAA+AGG | - | chr7.3:31654649-31654668 | None:intergenic | 45.0% |
| ACATTTAACCGGATGGACCC+GGG | + | chr7.3:31655701-31655720 | MS.gene51767:CDS | 50.0% | |
| ATACCCCCTGGTTCCGAAAT+AGG | - | chr7.3:31655384-31655403 | None:intergenic | 50.0% | |
| CCGGGGGAGAAACTGATAAT+AGG | + | chr7.3:31655719-31655738 | MS.gene51767:CDS | 50.0% | |
| CTCGAATAGTGGCACAATGG+CGG | - | chr7.3:31655183-31655202 | None:intergenic | 50.0% | |
| GCTAGTGATGTTGGTCGACT+TGG | + | chr7.3:31655215-31655234 | MS.gene51767:CDS | 50.0% | |
| TCCACCTATTTCGGAACCAG+GGG | + | chr7.3:31655377-31655396 | MS.gene51767:CDS | 50.0% | |
| !! | GGCATCGGCTTCTTCTATAC+AGG | + | chr7.3:31655751-31655770 | MS.gene51767:CDS | 50.0% |
| ATTTAACCGGATGGACCCGG+GGG | + | chr7.3:31655703-31655722 | MS.gene51767:CDS | 55.0% | |
| CATTTAACCGGATGGACCCG+GGG | + | chr7.3:31655702-31655721 | MS.gene51767:CDS | 55.0% | |
| CCACCTATTTCGGAACCAGG+GGG | + | chr7.3:31655378-31655397 | MS.gene51767:CDS | 55.0% | |
| ! | GGCTCTCCCTCTGAGAGATT+TGG | - | chr7.3:31654693-31654712 | None:intergenic | 55.0% |
| !! | TCAGGGTGCTGTCTCACAGT+AGG | - | chr7.3:31656793-31656812 | None:intergenic | 55.0% |
| !! | TGTTGGTCGACTTGGTCGCA+TGG | + | chr7.3:31655223-31655242 | MS.gene51767:CDS | 55.0% |
| CCCCCTGGTTCCGAAATAGG+TGG | - | chr7.3:31655381-31655400 | None:intergenic | 60.0% | |
| GTTTCTCCCCCGGGTCCATC+CGG | - | chr7.3:31655712-31655731 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 31654612 | 31657194 | 31654612 | ID=MS.gene51767 |
| chr7.3 | mRNA | 31654612 | 31657194 | 31654612 | ID=MS.gene51767.t1;Parent=MS.gene51767 |
| chr7.3 | exon | 31654612 | 31654901 | 31654612 | ID=MS.gene51767.t1.exon1;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31654612 | 31654901 | 31654612 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| chr7.3 | exon | 31655172 | 31655268 | 31655172 | ID=MS.gene51767.t1.exon2;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31655172 | 31655268 | 31655172 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| chr7.3 | exon | 31655369 | 31655543 | 31655369 | ID=MS.gene51767.t1.exon3;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31655369 | 31655543 | 31655369 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| chr7.3 | exon | 31655699 | 31655772 | 31655699 | ID=MS.gene51767.t1.exon4;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31655699 | 31655772 | 31655699 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| chr7.3 | exon | 31656015 | 31656260 | 31656015 | ID=MS.gene51767.t1.exon5;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31656015 | 31656260 | 31656015 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| chr7.3 | exon | 31656592 | 31656632 | 31656592 | ID=MS.gene51767.t1.exon6;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31656592 | 31656632 | 31656592 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| chr7.3 | exon | 31656992 | 31657075 | 31656992 | ID=MS.gene51767.t1.exon7;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31656992 | 31657075 | 31656992 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| chr7.3 | exon | 31657167 | 31657194 | 31657167 | ID=MS.gene51767.t1.exon8;Parent=MS.gene51767.t1 |
| chr7.3 | CDS | 31657167 | 31657194 | 31657167 | ID=cds.MS.gene51767.t1;Parent=MS.gene51767.t1 |
| Gene Sequence |
| Protein sequence |
