AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51776

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51776.t1 MTR_3g030770 67.133 143 28 2 1 124 1 143 4.68e-58 179
MS.gene51776.t1 MTR_1g108510 77.778 117 18 1 1 109 1 117 6.35e-58 179
MS.gene51776.t1 MTR_2g093190 75.214 117 28 1 1 116 1 117 3.11e-55 172
MS.gene51776.t1 MTR_0121s0100 71.795 117 25 1 1 109 1 117 5.80e-54 166
MS.gene51776.t1 MTR_3g052870 86.813 91 12 0 1 91 1 91 3.19e-53 167
MS.gene51776.t1 MTR_1g105920 86.813 91 12 0 1 91 1 91 8.62e-53 166
MS.gene51776.t1 MTR_8g043650 70.085 117 27 1 1 109 1 117 4.56e-52 164
MS.gene51776.t1 MTR_1g108580 83.516 91 15 0 1 91 1 91 9.87e-52 163
MS.gene51776.t1 MTR_1g105910 85.714 91 13 0 1 91 1 91 1.49e-51 163
MS.gene51776.t1 MTR_2g030740 83.516 91 15 0 1 91 1 91 3.56e-51 162
MS.gene51776.t1 MTR_3g052920 82.418 91 16 0 1 91 1 91 4.70e-50 159
MS.gene51776.t1 MTR_1g106070 81.319 91 17 0 1 91 1 91 2.12e-49 156
MS.gene51776.t1 MTR_1g075600 70.940 117 26 2 1 109 1 117 1.59e-48 155
MS.gene51776.t1 MTR_1g077360 80.220 91 18 0 1 91 1 91 3.88e-48 154
MS.gene51776.t1 MTR_1g012570 80.220 91 18 0 1 91 1 91 5.93e-48 154
MS.gene51776.t1 MTR_3g030780 78.022 91 20 0 1 91 1 91 1.03e-47 150
MS.gene51776.t1 MTR_2g085280 79.775 89 18 0 1 89 1 89 1.53e-47 153
MS.gene51776.t1 MTR_2g085250 79.775 89 18 0 1 89 1 89 1.58e-47 153
MS.gene51776.t1 MTR_0121s0080 80.220 91 18 0 1 91 1 91 3.99e-46 149
MS.gene51776.t1 MTR_5g045560 78.022 91 20 0 1 91 1 91 1.40e-45 148
MS.gene51776.t1 MTR_5g055100 77.528 89 20 0 1 89 1 89 1.30e-44 145
MS.gene51776.t1 MTR_5g053390 75.824 91 22 0 1 91 1 91 9.24e-44 143
MS.gene51776.t1 MTR_1g105905 82.432 74 13 0 18 91 1 74 1.40e-39 132
MS.gene51776.t1 MTR_3g080940 60.674 89 35 0 1 89 1 89 9.40e-35 119
MS.gene51776.t1 MTR_7g062350 71.429 77 21 1 16 91 27 103 3.22e-31 111
MS.gene51776.t1 MTR_8g086290 54.651 86 32 1 4 89 7 85 3.12e-29 104
MS.gene51776.t1 MTR_3g067910 54.167 96 36 1 23 110 4 99 7.48e-29 101
MS.gene51776.t1 MTR_2g105290 54.545 77 35 0 1 77 4 80 3.16e-26 97.1
MS.gene51776.t1 MTR_3g067875 75.000 56 14 0 18 73 1 56 3.76e-26 93.6
MS.gene51776.t1 MTR_1g063160 54.545 77 35 0 9 85 2 78 1.70e-25 95.1
MS.gene51776.t1 MTR_1g108500 59.524 84 26 2 23 100 111 192 1.48e-24 95.9
MS.gene51776.t1 MTR_1g047550 57.971 69 29 0 9 77 2 70 2.52e-24 92.0
MS.gene51776.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 2.53e-24 92.0
MS.gene51776.t1 MTR_1g054265 53.247 77 36 0 9 85 2 78 4.02e-24 91.3
MS.gene51776.t1 MTR_7g028448 61.333 75 29 0 4 78 7 81 1.17e-23 90.1
MS.gene51776.t1 MTR_4g036915 61.333 75 29 0 4 78 7 81 1.17e-23 90.1
MS.gene51776.t1 MTR_4g131030 53.425 73 34 0 9 81 2 74 9.04e-23 89.0
MS.gene51776.t1 MTR_8g051580 54.286 70 32 0 9 78 2 71 1.29e-21 85.1
MS.gene51776.t1 MTR_1g075570 52.000 100 26 3 18 109 1 86 2.56e-21 84.0
MS.gene51776.t1 MTR_4g094638 44.565 92 51 0 9 100 2 93 9.57e-21 82.8
MS.gene51776.t1 MTR_3g067870 60.317 63 25 0 16 78 83 145 3.71e-20 80.9
MS.gene51776.t1 MTR_8g046350 52.174 69 33 0 9 77 2 70 4.70e-20 80.9
MS.gene51776.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 6.35e-20 81.6
MS.gene51776.t1 MTR_1g053070 47.561 82 43 0 9 90 2 83 1.65e-19 81.3
MS.gene51776.t1 MTR_0003s0590 38.614 101 60 1 9 109 2 100 3.01e-19 80.5
MS.gene51776.t1 MTR_4g127140 53.247 77 36 0 1 77 4 80 3.14e-19 79.3
MS.gene51776.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 7.56e-19 79.0
MS.gene51776.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 9.44e-19 79.0
MS.gene51776.t1 MTR_3g452380 49.333 75 36 1 2 76 12 84 1.38e-18 78.6
MS.gene51776.t1 MTR_8g033270 48.148 81 38 2 7 85 2 80 2.15e-18 78.2
MS.gene51776.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 2.28e-18 76.3
MS.gene51776.t1 MTR_4g102530 49.254 67 34 0 10 76 3 69 3.03e-18 77.0
MS.gene51776.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 3.11e-18 77.4
MS.gene51776.t1 MTR_5g032150 47.059 68 36 0 9 76 2 69 4.20e-18 77.0
MS.gene51776.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 5.16e-18 76.3
MS.gene51776.t1 MTR_4g109830 47.887 71 34 2 7 76 2 70 6.27e-18 76.6
MS.gene51776.t1 MTR_3g102570 44.444 90 45 3 9 94 2 90 9.60e-18 77.4
MS.gene51776.t1 MTR_2g017865 49.315 73 35 1 4 76 14 84 1.22e-17 76.3
MS.gene51776.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 1.78e-17 75.9
MS.gene51776.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 2.07e-17 75.1
MS.gene51776.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 2.38e-17 75.1
MS.gene51776.t1 MTR_8g033220 36.111 108 65 1 10 113 3 110 2.99e-17 74.7
MS.gene51776.t1 MTR_6g464720 49.296 71 33 2 7 76 2 70 3.29e-17 75.1
MS.gene51776.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 4.16e-17 75.1
MS.gene51776.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.16e-16 73.2
MS.gene51776.t1 MTR_6g015975 49.296 71 33 2 7 76 2 70 1.23e-16 73.6
MS.gene51776.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.32e-16 73.2
MS.gene51776.t1 MTR_8g066260 46.479 71 35 2 7 76 2 70 1.39e-16 73.2
MS.gene51776.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 1.99e-16 68.6
MS.gene51776.t1 MTR_7g016600 49.296 71 33 2 7 76 2 70 2.00e-16 73.2
MS.gene51776.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 3.65e-16 71.6
MS.gene51776.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 4.05e-16 69.3
MS.gene51776.t1 MTR_8g097090 36.458 96 58 2 9 101 2 97 5.10e-16 71.6
MS.gene51776.t1 MTR_5g046790 42.029 69 39 1 9 76 2 70 8.10e-16 70.9
MS.gene51776.t1 MTR_3g084980 37.500 96 57 2 9 101 2 97 8.53e-16 71.2
MS.gene51776.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 1.03e-15 70.9
MS.gene51776.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 1.08e-15 69.7
MS.gene51776.t1 MTR_7g016630 43.662 71 37 2 7 76 2 70 1.32e-15 70.9
MS.gene51776.t1 MTR_4g084740 47.222 72 37 1 9 79 2 73 2.30e-15 70.9
MS.gene51776.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 2.47e-15 69.7
MS.gene51776.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 2.50e-15 69.7
MS.gene51776.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 3.41e-15 68.6
MS.gene51776.t1 MTR_8g022970 44.000 75 42 0 8 82 17 91 1.04e-14 67.4
MS.gene51776.t1 MTR_7g075850 42.529 87 45 3 7 90 2 86 1.32e-14 68.2
MS.gene51776.t1 MTR_4g109810 50.000 56 28 0 9 64 2 57 1.57e-14 67.8
MS.gene51776.t1 MTR_5g066960 45.614 57 31 0 9 65 2 58 2.82e-14 63.2
MS.gene51776.t1 MTR_3g113030 44.286 70 37 1 9 76 2 71 2.85e-14 67.0
MS.gene51776.t1 MTR_3g067915 49.153 59 30 0 33 91 3 61 2.22e-13 61.6
MS.gene51776.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 6.00e-13 62.4
MS.gene51776.t1 MTR_1g041615 58.696 46 19 0 20 65 17 62 6.57e-13 61.6
MS.gene51776.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 6.66e-13 62.8
MS.gene51776.t1 MTR_4g093030 36.170 94 44 2 9 86 2 95 7.59e-13 62.0
MS.gene51776.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 7.72e-13 62.4
MS.gene51776.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 8.93e-13 62.4
MS.gene51776.t1 MTR_4g108720 38.961 77 45 1 9 83 2 78 3.00e-12 62.4
MS.gene51776.t1 MTR_4g051538 39.506 81 49 0 1 81 1 81 1.92e-11 59.3
MS.gene51776.t1 MTR_3g109930 46.429 56 30 0 27 82 20 75 2.90e-11 58.2
MS.gene51776.t1 MTR_3g437790 46.296 54 28 1 26 78 30 83 3.17e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51776.t1 AT5G60440 62.264 106 36 2 5 108 3 106 1.34e-38 132
MS.gene51776.t1 AT1G01530 64.198 81 29 0 5 85 3 83 2.82e-32 114
MS.gene51776.t1 AT4G36590 63.855 83 28 1 8 90 6 86 1.09e-31 112
MS.gene51776.t1 AT1G65360 56.977 86 37 0 5 90 3 88 2.02e-31 111
MS.gene51776.t1 AT2G24840 53.846 91 38 1 9 99 63 149 6.66e-29 106
MS.gene51776.t1 AT2G34440 43.636 110 62 0 9 118 2 111 1.15e-25 95.5
MS.gene51776.t1 AT3G66656 58.824 68 28 0 9 76 2 69 2.52e-23 89.7
MS.gene51776.t1 AT2G45660 44.318 88 43 1 10 91 3 90 3.93e-21 83.6
MS.gene51776.t1 AT2G45660 44.318 88 43 1 10 91 3 90 1.93e-20 83.2
MS.gene51776.t1 AT4G09960 45.238 84 45 1 9 91 2 85 3.82e-20 82.4
MS.gene51776.t1 AT4G09960 45.238 84 45 1 9 91 2 85 4.59e-20 82.4
MS.gene51776.t1 AT4G09960 45.238 84 45 1 9 91 3 86 4.82e-20 82.4
MS.gene51776.t1 AT4G09960 45.238 84 45 1 9 91 12 95 6.25e-20 82.0
MS.gene51776.t1 AT4G09960 45.238 84 45 1 9 91 28 111 7.84e-20 82.4
MS.gene51776.t1 AT1G72350 52.055 73 33 1 9 81 43 113 9.81e-20 81.3
MS.gene51776.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.10e-19 80.1
MS.gene51776.t1 AT4G09960 45.238 84 45 1 9 91 97 180 1.65e-19 82.4
MS.gene51776.t1 AT2G45650 51.471 68 33 0 9 76 2 69 1.91e-19 81.3
MS.gene51776.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.18e-19 80.1
MS.gene51776.t1 AT5G51870 51.389 72 35 0 5 76 21 92 2.78e-19 79.7
MS.gene51776.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.16e-19 79.7
MS.gene51776.t1 AT5G51870 53.731 67 31 0 10 76 13 79 4.75e-19 79.7
MS.gene51776.t1 AT5G62165 36.893 103 62 1 10 109 3 105 4.87e-19 78.2
MS.gene51776.t1 AT5G62165 36.893 103 62 1 10 109 3 105 4.87e-19 78.2
MS.gene51776.t1 AT5G62165 36.893 103 62 1 10 109 3 105 4.87e-19 78.2
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 4.99e-19 77.8
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 4.99e-19 77.8
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 4.99e-19 77.8
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 4.99e-19 77.8
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 4.99e-19 77.8
MS.gene51776.t1 AT3G57390 51.429 70 32 1 7 76 2 69 5.05e-19 79.7
MS.gene51776.t1 AT2G22540 50.000 68 34 0 9 76 2 69 8.06e-19 79.3
MS.gene51776.t1 AT2G22540 50.000 68 34 0 9 76 2 69 8.06e-19 79.3
MS.gene51776.t1 AT3G57390 51.429 70 32 1 7 76 2 69 1.12e-18 79.3
MS.gene51776.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.22e-18 79.3
MS.gene51776.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.32e-18 79.3
MS.gene51776.t1 AT2G42830 49.333 75 36 1 2 76 12 84 1.35e-18 79.0
MS.gene51776.t1 AT2G42830 49.333 75 36 1 2 76 12 84 1.45e-18 78.6
MS.gene51776.t1 AT4G24540 50.000 68 34 0 9 76 2 69 2.39e-18 77.8
MS.gene51776.t1 AT4G18960 43.820 89 47 2 4 91 15 101 2.59e-18 78.2
MS.gene51776.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.63e-18 75.9
MS.gene51776.t1 AT3G58780 49.333 75 36 1 2 76 12 84 3.14e-18 77.8
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 3.45e-18 76.6
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 3.45e-18 76.6
MS.gene51776.t1 AT3G58780 49.333 75 36 1 2 76 18 90 3.49e-18 77.8
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 3.55e-18 77.0
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 3.55e-18 77.0
MS.gene51776.t1 AT5G62165 36.449 107 65 1 10 113 3 109 3.55e-18 77.0
MS.gene51776.t1 AT3G58780 49.333 75 36 1 2 76 12 84 3.64e-18 78.2
MS.gene51776.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.10e-18 74.3
MS.gene51776.t1 AT4G22950 50.746 67 33 0 10 76 3 69 4.24e-18 75.9
MS.gene51776.t1 AT3G04100 45.070 71 39 0 5 75 10 80 5.30e-18 76.6
MS.gene51776.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.14e-18 75.1
MS.gene51776.t1 AT1G29962 45.946 74 40 0 5 78 4 77 1.01e-17 75.1
MS.gene51776.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.28e-17 75.1
MS.gene51776.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.34e-17 74.7
MS.gene51776.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.59e-17 75.5
MS.gene51776.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.59e-17 75.5
MS.gene51776.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.72e-17 75.5
MS.gene51776.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.84e-17 75.1
MS.gene51776.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.89e-17 74.3
MS.gene51776.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.19e-17 74.7
MS.gene51776.t1 AT5G51860 50.746 67 33 0 10 76 3 69 2.37e-17 74.7
MS.gene51776.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.38e-17 75.5
MS.gene51776.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.38e-17 75.5
MS.gene51776.t1 AT5G20240 46.575 73 37 1 9 79 2 74 3.14e-17 73.2
MS.gene51776.t1 AT5G51860 50.746 67 33 0 10 76 3 69 3.18e-17 74.3
MS.gene51776.t1 AT1G28460 45.946 74 40 0 5 78 4 77 3.19e-17 73.9
MS.gene51776.t1 AT5G20240 46.575 73 37 1 9 79 2 74 4.91e-17 73.9
MS.gene51776.t1 AT1G69120 47.887 71 34 2 7 76 2 70 6.12e-17 74.3
MS.gene51776.t1 AT1G26310 47.887 71 34 2 7 76 2 70 6.53e-17 74.3
MS.gene51776.t1 AT3G30260 44.928 69 37 1 9 76 2 70 8.85e-17 73.9
MS.gene51776.t1 AT5G60910 47.887 71 34 2 7 76 2 70 1.53e-16 73.2
MS.gene51776.t1 AT2G22540 48.529 68 30 1 9 76 2 64 1.90e-16 72.8
MS.gene51776.t1 AT1G69120 47.887 71 34 2 7 76 2 70 1.94e-16 73.2
MS.gene51776.t1 AT4G11880 48.529 68 34 1 10 76 3 70 2.37e-16 71.6
MS.gene51776.t1 AT4G11880 48.529 68 34 1 10 76 3 70 2.37e-16 71.6
MS.gene51776.t1 AT5G15800 49.296 71 33 2 7 76 2 70 4.05e-16 72.4
MS.gene51776.t1 AT3G61120 47.059 68 36 0 9 76 2 69 4.32e-16 72.0
MS.gene51776.t1 AT3G58780 52.308 65 29 1 2 66 12 74 4.33e-16 72.0
MS.gene51776.t1 AT5G23260 50.000 76 36 1 4 77 13 88 4.38e-16 72.4
MS.gene51776.t1 AT5G23260 50.000 76 36 1 4 77 13 88 4.54e-16 72.4
MS.gene51776.t1 AT3G58780 52.308 65 29 1 2 66 12 74 4.92e-16 72.4
MS.gene51776.t1 AT2G14210 44.928 69 37 1 9 76 2 70 5.09e-16 71.6
MS.gene51776.t1 AT2G14210 44.928 69 37 1 9 76 2 70 6.43e-16 71.6
MS.gene51776.t1 AT1G77980 50.000 72 35 1 9 79 2 73 6.75e-16 72.4
MS.gene51776.t1 AT5G15800 47.826 69 35 1 9 76 2 70 6.78e-16 72.0
MS.gene51776.t1 AT4G11880 48.529 68 34 1 10 76 3 70 7.17e-16 71.2
MS.gene51776.t1 AT4G11880 48.529 68 34 1 10 76 3 70 7.17e-16 71.2
MS.gene51776.t1 AT1G77950 47.222 72 37 1 9 79 2 73 9.20e-16 71.2
MS.gene51776.t1 AT1G77950 47.222 72 37 1 9 79 2 73 9.20e-16 71.2
MS.gene51776.t1 AT1G77950 47.222 72 37 1 9 79 2 73 9.20e-16 71.2
MS.gene51776.t1 AT1G77950 47.222 72 37 1 9 79 2 73 9.20e-16 71.2
MS.gene51776.t1 AT5G23260 52.113 71 32 1 9 77 2 72 1.36e-15 70.9
MS.gene51776.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.44e-15 69.3
MS.gene51776.t1 AT5G23260 52.113 71 32 1 9 77 2 72 1.45e-15 70.5
MS.gene51776.t1 AT1G22130 48.611 72 36 1 9 79 2 73 1.69e-15 71.6
MS.gene51776.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.73e-15 69.7
MS.gene51776.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.23e-15 69.3
MS.gene51776.t1 AT3G54340 43.836 73 39 1 9 79 2 74 2.36e-15 70.1
MS.gene51776.t1 AT2G03710 47.143 70 35 2 9 76 2 71 2.44e-15 68.9
MS.gene51776.t1 AT1G17310 54.054 74 32 1 8 81 47 118 2.58e-15 69.7
MS.gene51776.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.84e-15 68.9
MS.gene51776.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.98e-15 68.9
MS.gene51776.t1 AT1G17310 51.899 79 36 1 8 86 58 134 3.12e-15 69.7
MS.gene51776.t1 AT5G65060 46.377 69 36 1 9 76 2 70 3.87e-15 68.6
MS.gene51776.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.44e-15 68.6
MS.gene51776.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.16e-15 68.2
MS.gene51776.t1 AT1G71692 44.286 70 38 1 9 77 2 71 7.99e-15 68.2
MS.gene51776.t1 AT3G02310 46.377 69 36 1 9 76 2 70 8.26e-15 68.9
MS.gene51776.t1 AT1G24260 51.786 56 27 0 9 64 2 57 9.65e-15 68.6
MS.gene51776.t1 AT1G24260 51.786 56 27 0 9 64 2 57 9.76e-15 68.6
MS.gene51776.t1 AT1G24260 51.786 56 27 0 9 64 2 57 1.08e-14 68.2
MS.gene51776.t1 AT2G03710 47.143 70 35 2 9 76 2 71 1.38e-14 68.2
MS.gene51776.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.40e-14 67.8
MS.gene51776.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.40e-14 67.8
MS.gene51776.t1 AT2G03710 47.143 70 35 2 9 76 2 71 1.42e-14 68.2
MS.gene51776.t1 AT1G28450 40.541 74 44 0 5 78 4 77 1.48e-14 67.0
MS.gene51776.t1 AT1G47760 40.299 67 40 0 9 75 2 68 2.06e-14 66.6
MS.gene51776.t1 AT5G65070 39.130 69 41 1 9 76 2 70 4.82e-14 64.7
MS.gene51776.t1 AT5G65070 39.130 69 41 1 9 76 2 70 1.69e-13 64.3
MS.gene51776.t1 AT5G65070 39.130 69 41 1 9 76 2 70 2.04e-13 64.3
MS.gene51776.t1 AT1G18750 37.662 77 46 1 9 83 2 78 2.18e-13 65.9
MS.gene51776.t1 AT1G18750 37.662 77 46 1 9 83 2 78 2.21e-13 65.9
MS.gene51776.t1 AT5G65070 39.130 69 41 1 9 76 2 70 2.91e-13 64.3
MS.gene51776.t1 AT1G18750 38.667 75 44 1 9 81 2 76 3.14e-13 65.5
MS.gene51776.t1 AT5G65070 43.860 57 32 0 9 65 2 58 1.38e-12 62.4
MS.gene51776.t1 AT4G37435 39.437 71 42 1 9 78 2 72 2.35e-12 61.2
MS.gene51776.t1 AT1G69540 40.789 76 44 1 9 83 2 77 4.39e-12 62.0
MS.gene51776.t1 AT1G69540 40.789 76 44 1 9 83 2 77 4.55e-12 62.0
MS.gene51776.t1 AT5G49420 36.170 94 53 2 5 91 3 96 4.85e-12 61.6
MS.gene51776.t1 AT5G65080 36.364 77 48 1 1 76 1 77 6.09e-12 60.1
MS.gene51776.t1 AT5G49490 37.500 88 48 2 5 85 41 128 8.01e-12 60.8
MS.gene51776.t1 AT5G65080 40.323 62 37 0 1 62 1 62 9.43e-12 60.1
MS.gene51776.t1 AT2G03060 37.662 77 46 1 9 83 2 78 2.09e-11 60.1
MS.gene51776.t1 AT2G03060 37.662 77 46 1 9 83 2 78 2.16e-11 60.1
MS.gene51776.t1 AT2G03060 37.662 77 46 1 9 83 2 78 2.16e-11 60.1
MS.gene51776.t1 AT2G03060 37.662 77 46 1 9 83 2 78 2.16e-11 60.1
MS.gene51776.t1 AT1G46408 42.500 80 42 2 7 82 2 81 3.17e-11 59.3
MS.gene51776.t1 AT2G26320 36.364 77 47 1 5 79 14 90 6.72e-11 55.8
MS.gene51776.t1 AT1G77080 47.826 69 35 1 9 76 2 70 7.72e-11 57.0
MS.gene51776.t1 AT1G77080 47.826 69 35 1 9 76 2 70 9.48e-11 56.6

Find 29 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGGCTTGTCCAGTTGA+TGG 0.352747 7.3:-31815115 MS.gene51776:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 7.3:+31815409 None:intergenic
CAACAACACGCTCAGGGAAA+TGG 0.375317 7.3:-31815149 MS.gene51776:CDS
GTCTATGACCGTATCAAGAT+TGG 0.398383 7.3:+31815278 None:intergenic
CTCAAATCAACAACACGCTC+AGG 0.435239 7.3:-31815156 MS.gene51776:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.435393 7.3:-31815360 MS.gene51776:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 7.3:+31815279 None:intergenic
GCCTTTCTTTCTGCTCGACA+TGG 0.460288 7.3:+31815479 None:intergenic
CATAGACCGCTATCTTTCTC+TGG 0.460785 7.3:-31815262 MS.gene51776:CDS
GGTGGGCTTGTCCAGTTGAT+GGG 0.465063 7.3:-31815114 MS.gene51776:CDS
AGCAGCATCTGCACCACAAA+GGG 0.492573 7.3:+31815347 None:intergenic
GCCATGTCGAGCAGAAAGAA+AGG 0.543058 7.3:-31815480 MS.gene51776:CDS
TGGTCACCCCAATCTTGATA+CGG 0.553864 7.3:-31815286 MS.gene51776:CDS
GCACCATGCAACACATATTG+AGG 0.576146 7.3:-31815221 MS.gene51776:CDS
CTCGTTGTATTCTCACCTAG+TGG 0.580084 7.3:-31815324 MS.gene51776:CDS
ATCAAGATTGGGGTGACCAA+AGG 0.581678 7.3:+31815290 None:intergenic
TCGAGCAGAAAGAAAGGCCG+AGG 0.584906 7.3:-31815474 MS.gene51776:CDS
AGCATTGAGTTCACGAACGT+TGG 0.603238 7.3:+31815186 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 7.3:-31815319 MS.gene51776:CDS
GAGCCTCAATATGTGTTGCA+TGG 0.613253 7.3:+31815218 None:intergenic
TCAAATCAACAACACGCTCA+GGG 0.623527 7.3:-31815155 MS.gene51776:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 7.3:+31815309 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 7.3:-31815399 MS.gene51776:CDS
CAACACGCTCAGGGAAATGG+AGG 0.627235 7.3:-31815146 MS.gene51776:CDS
GAGCAGCATCTGCACCACAA+AGG 0.629318 7.3:+31815346 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 7.3:+31815194 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 7.3:+31815280 None:intergenic
GTGGTACCAGAGAAAGATAG+CGG 0.703250 7.3:+31815256 None:intergenic
CTGGTACCACCACAAAACAA+CGG 0.718153 7.3:-31815243 MS.gene51776:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTTTTCATCTCGATCTTT+TGG + chr7.3:31815142-31815161 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG + chr7.3:31815281-31815300 None:intergenic 35.0%
TCTATGACCGTATCAAGATT+GGG + chr7.3:31815311-31815330 None:intergenic 35.0%
!! AAATGGAGGCTAATTTTTGG+TGG - chr7.3:31815455-31815474 MS.gene51776:CDS 35.0%
!!! AATGGAGGCTAATTTTTGGT+GGG - chr7.3:31815456-31815475 MS.gene51776:CDS 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG - chr7.3:31815281-31815300 MS.gene51776:CDS 35.0%
CTATGACCGTATCAAGATTG+GGG + chr7.3:31815310-31815329 None:intergenic 40.0%
GTCTATGACCGTATCAAGAT+TGG + chr7.3:31815312-31815331 None:intergenic 40.0%
TCAAATCAACAACACGCTCA+GGG - chr7.3:31815432-31815451 MS.gene51776:CDS 40.0%
TGTATTCTCACCTAGTGGAA+AGG - chr7.3:31815268-31815287 MS.gene51776:CDS 40.0%
! GGGAAATGGAGGCTAATTTT+TGG - chr7.3:31815452-31815471 MS.gene51776:CDS 40.0%
ATCAAGATTGGGGTGACCAA+AGG + chr7.3:31815300-31815319 None:intergenic 45.0%
CATAGACCGCTATCTTTCTC+TGG - chr7.3:31815325-31815344 MS.gene51776:CDS 45.0%
CTCAAATCAACAACACGCTC+AGG - chr7.3:31815431-31815450 MS.gene51776:CDS 45.0%
CTCGTTGTATTCTCACCTAG+TGG - chr7.3:31815263-31815282 MS.gene51776:CDS 45.0%
CTGGTACCACCACAAAACAA+CGG - chr7.3:31815344-31815363 MS.gene51776:CDS 45.0%
GAGCCTCAATATGTGTTGCA+TGG + chr7.3:31815372-31815391 None:intergenic 45.0%
GCACCATGCAACACATATTG+AGG - chr7.3:31815366-31815385 MS.gene51776:CDS 45.0%
GTGGTACCAGAGAAAGATAG+CGG + chr7.3:31815334-31815353 None:intergenic 45.0%
TGGTCACCCCAATCTTGATA+CGG - chr7.3:31815301-31815320 MS.gene51776:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG + chr7.3:31815404-31815423 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG - chr7.3:31815188-31815207 MS.gene51776:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG + chr7.3:31815181-31815200 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG + chr7.3:31815243-31815262 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr7.3:31815227-31815246 MS.gene51776:CDS 50.0%
CAACAACACGCTCAGGGAAA+TGG - chr7.3:31815438-31815457 MS.gene51776:CDS 50.0%
GTTCACGAACGTTGGCATTG+CGG + chr7.3:31815396-31815415 None:intergenic 50.0%
! TCTCGATCTTTTGGCGACCT+CGG + chr7.3:31815133-31815152 None:intergenic 50.0%
!!! ATGGTGCCGTTGTTTTGTGG+TGG + chr7.3:31815353-31815372 None:intergenic 50.0%
!!! TGCATGGTGCCGTTGTTTTG+TGG + chr7.3:31815356-31815375 None:intergenic 50.0%
CAACACGCTCAGGGAAATGG+AGG - chr7.3:31815441-31815460 MS.gene51776:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG + chr7.3:31815244-31815263 None:intergenic 55.0%
TCGAGCAGAAAGAAAGGCCG+AGG - chr7.3:31815113-31815132 MS.gene51776:CDS 55.0%
! GGTGGGCTTGTCCAGTTGAT+GGG - chr7.3:31815473-31815492 MS.gene51776:CDS 55.0%
!! TGGTGGGCTTGTCCAGTTGA+TGG - chr7.3:31815472-31815491 MS.gene51776:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 31815110 31815499 31815110 ID=MS.gene51776
chr7.3 mRNA 31815110 31815499 31815110 ID=MS.gene51776.t1;Parent=MS.gene51776
chr7.3 exon 31815110 31815499 31815110 ID=MS.gene51776.t1.exon1;Parent=MS.gene51776.t1
chr7.3 CDS 31815110 31815499 31815110 ID=cds.MS.gene51776.t1;Parent=MS.gene51776.t1
Gene Sequence

>MS.gene51776

ATGTCGAGCAGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGACAACAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAATCAAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCACCACAAAACAACGGCACCATGCAACACATATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGCTTACTCAAATCAACAACACGCTCAGGGAAATGGAGGCTAATTTTTGGTGGGCTTGTCCAGTTGATGGGATGA
Protein sequence

>MS.gene51776.t1

MSSRKKGRGRQKIEMKKMSNDNNLQVTFSKRRSGLFKKSSELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQHILRLTAMPTFVNSMLSLLKSTTRSGKWRLIFGGLVQLMG