Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51811.t1 | XP_013459055.1 | 90.8 | 393 | 27 | 2 | 1 | 384 | 1 | 393 | 1.50E-197 | 698.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51811.t1 | B0JZ85 | 24.9 | 173 | 119 | 3 | 122 | 288 | 97 | 264 | 2.7e-06 | 54.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51811.t1 | A0A072UVJ5 | 90.8 | 393 | 27 | 2 | 1 | 384 | 1 | 393 | 1.1e-197 | 698.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51811.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51811.t1 | MTR_3g023750 | 92.593 | 378 | 24 | 1 | 11 | 384 | 16 | 393 | 0.0 | 716 |
| MS.gene51811.t1 | MTR_5g097950 | 69.432 | 229 | 70 | 0 | 156 | 384 | 268 | 496 | 2.34e-103 | 314 |
| MS.gene51811.t1 | MTR_5g097950 | 69.655 | 145 | 35 | 1 | 46 | 190 | 17 | 152 | 1.13e-56 | 193 |
| MS.gene51811.t1 | MTR_5g097950 | 31.602 | 231 | 114 | 9 | 156 | 378 | 204 | 398 | 1.44e-14 | 75.5 |
| MS.gene51811.t1 | MTR_5g097950 | 29.457 | 129 | 69 | 3 | 113 | 220 | 361 | 488 | 9.59e-11 | 63.5 |
| MS.gene51811.t1 | MTR_5g097950 | 69.432 | 229 | 70 | 0 | 156 | 384 | 304 | 532 | 3.86e-103 | 315 |
| MS.gene51811.t1 | MTR_5g097950 | 69.655 | 145 | 35 | 1 | 46 | 190 | 53 | 188 | 1.83e-56 | 193 |
| MS.gene51811.t1 | MTR_5g097950 | 31.602 | 231 | 114 | 9 | 156 | 378 | 240 | 434 | 1.17e-14 | 75.9 |
| MS.gene51811.t1 | MTR_5g097950 | 29.457 | 129 | 69 | 3 | 113 | 220 | 397 | 524 | 8.09e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 8.71e-22 | 98.2 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.38e-12 | 69.7 |
| MS.gene51811.t1 | AT5G61190 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.33e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 8.86e-22 | 97.8 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 195 | 411 | 1.64e-12 | 69.7 |
| MS.gene51811.t1 | AT5G61190 | 24.476 | 286 | 162 | 10 | 119 | 374 | 148 | 409 | 5.00e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 146 | 308 | 8.86e-22 | 97.8 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 195 | 411 | 1.64e-12 | 69.7 |
| MS.gene51811.t1 | AT5G61190 | 24.476 | 286 | 162 | 10 | 119 | 374 | 148 | 409 | 5.00e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 9.24e-22 | 97.8 |
| MS.gene51811.t1 | AT5G61190 | 25.118 | 211 | 118 | 6 | 112 | 284 | 289 | 497 | 1.63e-13 | 72.8 |
| MS.gene51811.t1 | AT5G61190 | 25.442 | 283 | 155 | 10 | 119 | 374 | 242 | 495 | 7.25e-13 | 70.9 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.12e-21 | 97.8 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.64e-12 | 69.7 |
| MS.gene51811.t1 | AT5G61190 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.81e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.24e-21 | 97.4 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.75e-12 | 69.7 |
| MS.gene51811.t1 | AT5G61190 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 5.09e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.24e-21 | 97.4 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.74e-12 | 69.7 |
| MS.gene51811.t1 | AT5G61190 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.75e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.27e-21 | 97.4 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.78e-12 | 69.7 |
| MS.gene51811.t1 | AT5G61190 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.81e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.86e-21 | 97.1 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.76e-12 | 69.3 |
| MS.gene51811.t1 | AT5G61190 | 22.776 | 281 | 173 | 7 | 119 | 374 | 242 | 503 | 3.90e-12 | 68.6 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.95e-21 | 96.7 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.87e-12 | 69.3 |
| MS.gene51811.t1 | AT5G61190 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.21e-12 | 68.2 |
| MS.gene51811.t1 | AT5G61190 | 30.412 | 194 | 104 | 4 | 189 | 382 | 240 | 402 | 1.95e-21 | 96.7 |
| MS.gene51811.t1 | AT5G61190 | 24.201 | 219 | 118 | 6 | 112 | 284 | 289 | 505 | 1.87e-12 | 69.3 |
| MS.gene51811.t1 | AT5G61190 | 24.296 | 284 | 165 | 9 | 119 | 374 | 242 | 503 | 4.21e-12 | 68.2 |
Find 89 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCATAGCAGCATGTTTC+TGG | 0.170828 | 3.4:+16099986 | None:intergenic |
| AACCAACAGATTATCAAAAT+TGG | 0.227652 | 3.4:-16104167 | MS.gene51811:CDS |
| TCTGATGCCTTCTTTGGTTT+TGG | 0.255884 | 3.4:+16100135 | None:intergenic |
| ACATGGCCACCACAAATTTA+TGG | 0.268191 | 3.4:-16102494 | MS.gene51811:CDS |
| TCAAGTTCTGATGCCTTCTT+TGG | 0.274301 | 3.4:+16100129 | None:intergenic |
| ACCGCAACAAATACTTTAAT+CGG | 0.278525 | 3.4:-16100186 | MS.gene51811:CDS |
| CGCTTGAATTCGGCAATAGA+TGG | 0.316684 | 3.4:+16100405 | None:intergenic |
| GCAGAATCAACCTGTTTCTT+AGG | 0.337690 | 3.4:+16102230 | None:intergenic |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.356623 | 3.4:+16100266 | None:intergenic |
| ATCAGGGAATGATGAATAAT+AGG | 0.360615 | 3.4:+16104269 | None:intergenic |
| AACACCGTTACGCTTGAATT+CGG | 0.361255 | 3.4:+16100395 | None:intergenic |
| AAGCTTTGGTGACTTTGGTT+TGG | 0.371601 | 3.4:+16102444 | None:intergenic |
| ATACAAGGACAAGGGTTAAT+TGG | 0.382675 | 3.4:-16102275 | MS.gene51811:CDS |
| CACGCAGAAGGTAAACTTGC+AGG | 0.393751 | 3.4:+16102524 | None:intergenic |
| AGGCTTGTTGTTGTTGCTGC+TGG | 0.394600 | 3.4:+16104289 | None:intergenic |
| GGAGGATGAAGTGAAGGATC+AGG | 0.403946 | 3.4:+16104252 | None:intergenic |
| GCAATCCGAGCCTAAGAAAC+AGG | 0.404268 | 3.4:-16102240 | MS.gene51811:CDS |
| TCTCAAAGCTTTGGTGACTT+TGG | 0.404347 | 3.4:+16102439 | None:intergenic |
| TTGTTGCTGCTGGAAATTGT+AGG | 0.411429 | 3.4:+16104299 | None:intergenic |
| TAAAGTATTTGTTGCGGTGG+CGG | 0.415658 | 3.4:+16100191 | None:intergenic |
| GCATATATCAAACATCTTGC+TGG | 0.416947 | 3.4:-16102164 | MS.gene51811:CDS |
| CACTTCACATCTCAAAGCTT+TGG | 0.420423 | 3.4:+16102430 | None:intergenic |
| GCAAGATTAATTGTAACAGC+AGG | 0.443520 | 3.4:-16100311 | MS.gene51811:CDS |
| GTTGCCTTGATGTCTAATAA+TGG | 0.452518 | 3.4:-16100435 | MS.gene51811:CDS |
| TGGGCGGTGTAAAGAGAAAC+AGG | 0.453372 | 3.4:+16104189 | None:intergenic |
| TGGGAGAAAGCATGCTGCTC+AGG | 0.459949 | 3.4:-16102144 | MS.gene51811:intron |
| CTTACAAGATCATATCTGAT+AGG | 0.461948 | 3.4:+16104126 | None:intergenic |
| ATCAACCTGTTTCTTAGGCT+CGG | 0.472485 | 3.4:+16102235 | None:intergenic |
| GGTGAAAATTGAAAACTGTC+TGG | 0.474169 | 3.4:+16100016 | None:intergenic |
| GTCTCGTTGCCATAAATTTG+TGG | 0.477870 | 3.4:+16102485 | None:intergenic |
| CTTCTAATATTGCAGGCTGT+TGG | 0.480500 | 3.4:-16102572 | MS.gene51811:intron |
| GAGCTTGGTATTGTTGTTGA+GGG | 0.489208 | 3.4:+16104325 | None:intergenic |
| GGCTCGGATTGCTTGACTAC+GGG | 0.489539 | 3.4:+16102251 | None:intergenic |
| AGTATTTGTTGCGGTGGCGG+TGG | 0.490137 | 3.4:+16100194 | None:intergenic |
| TTTGCAAGTGGGTCAGTGCC+AGG | 0.495030 | 3.4:+16104231 | None:intergenic |
| TGAGCTTGGTATTGTTGTTG+AGG | 0.503622 | 3.4:+16104324 | None:intergenic |
| TTGGTGACTTTGGTTTGGTT+AGG | 0.506602 | 3.4:+16102449 | None:intergenic |
| CATATATCAAACATCTTGCT+GGG | 0.508931 | 3.4:-16102163 | MS.gene51811:CDS |
| AGGCTCGGATTGCTTGACTA+CGG | 0.513657 | 3.4:+16102250 | None:intergenic |
| GAAGGAGGAGCTGCAGTTGA+TGG | 0.516170 | 3.4:-16100078 | MS.gene51811:CDS |
| AAGAAGGCAGGGTCAGTCAC+TGG | 0.516327 | 3.4:-16099964 | MS.gene51811:CDS |
| TCTTATGAAAGTCACATAGC+TGG | 0.520481 | 3.4:-16102380 | MS.gene51811:CDS |
| GAATTCAAGCGTAACGGTGT+TGG | 0.521387 | 3.4:-16100393 | MS.gene51811:CDS |
| GATCCTTCACTTCATCCTCC+TGG | 0.522615 | 3.4:-16104249 | MS.gene51811:CDS |
| ACATGCTGCTATGGTGAAGA+AGG | 0.523999 | 3.4:-16099980 | MS.gene51811:CDS |
| TTCGCATGAGATGTAATAGT+AGG | 0.525742 | 3.4:+16102320 | None:intergenic |
| CGATCAACCAAAACCAAAGA+AGG | 0.528394 | 3.4:-16100142 | MS.gene51811:CDS |
| AATGCCATTATTAGACATCA+AGG | 0.532248 | 3.4:+16100431 | None:intergenic |
| GCAGGGTCAGTCACTGGCTG+AGG | 0.532286 | 3.4:-16099958 | None:intergenic |
| TGTTGCTGCTGGAAATTGTA+GGG | 0.532481 | 3.4:+16104300 | None:intergenic |
| CCGCAACAAATACTTTAATC+GGG | 0.534520 | 3.4:-16100185 | MS.gene51811:CDS |
| CTTCTGCGTGGAATGGTACA+TGG | 0.535273 | 3.4:-16102511 | MS.gene51811:CDS |
| GCTTGAATTCGGCAATAGAT+GGG | 0.537412 | 3.4:+16100406 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 3.4:-16099976 | MS.gene51811:CDS |
| CAGCATGTTTCTGGCCAACA+AGG | 0.542850 | 3.4:+16099995 | None:intergenic |
| TAAGAAACACTTGAAGAACT+TGG | 0.549430 | 3.4:-16100262 | MS.gene51811:CDS |
| ATCTACATTACACACTTAGC+CGG | 0.550310 | 3.4:-16100285 | MS.gene51811:CDS |
| AGTTTACCTTCTGCGTGGAA+TGG | 0.550393 | 3.4:-16102518 | MS.gene51811:CDS |
| CAAGATTAATTGTAACAGCA+GGG | 0.550872 | 3.4:-16100310 | MS.gene51811:CDS |
| AAAAGCTGCCAAGAAAATCA+AGG | 0.552640 | 3.4:-16100361 | MS.gene51811:CDS |
| AAAATCGATGTCGGCACTAG+TGG | 0.557209 | 3.4:-16100222 | MS.gene51811:CDS |
| CCCGATTAAAGTATTTGTTG+CGG | 0.561375 | 3.4:+16100185 | None:intergenic |
| TTGATGTCTAATAATGGCAT+TGG | 0.569058 | 3.4:-16100429 | MS.gene51811:CDS |
| GTCAAAGAAACGTAAAGTTG+TGG | 0.571297 | 3.4:-16100100 | MS.gene51811:CDS |
| GAAACAGGTTGATTCTGCAA+CGG | 0.579888 | 3.4:-16102225 | MS.gene51811:CDS |
| TTGATAATCTGTTGGTTGGG+CGG | 0.583308 | 3.4:+16104173 | None:intergenic |
| TATCTGATAGGTTCAGATTG+TGG | 0.585811 | 3.4:+16104138 | None:intergenic |
| TCAAGGTTGCTCAGTCTGCA+TGG | 0.588753 | 3.4:-16100344 | MS.gene51811:CDS |
| ATCGGGCCGCAAGAAAAGCC+AGG | 0.589273 | 3.4:-16100168 | MS.gene51811:CDS |
| GATTAAAGTATTTGTTGCGG+TGG | 0.590642 | 3.4:+16100188 | None:intergenic |
| GGAAATTGTAGGGTTGAGCT+TGG | 0.593362 | 3.4:+16104310 | None:intergenic |
| GTGCCAGGAGGATGAAGTGA+AGG | 0.595047 | 3.4:+16104246 | None:intergenic |
| ACTGACACAAGTAGTATACA+AGG | 0.597057 | 3.4:-16102290 | MS.gene51811:CDS |
| TGGCCAGAAACATGCTGCTA+TGG | 0.598112 | 3.4:-16099989 | MS.gene51811:CDS |
| CATGTACCATTCCACGCAGA+AGG | 0.601401 | 3.4:+16102512 | None:intergenic |
| GAGGATGAAGTGAAGGATCA+GGG | 0.602017 | 3.4:+16104253 | None:intergenic |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.613128 | 3.4:-16099975 | MS.gene51811:CDS |
| AAGAAACGTAAAGTTGTGGA+AGG | 0.617548 | 3.4:-16100096 | MS.gene51811:CDS |
| AAAGATGTTGAATTTGCAAG+TGG | 0.619628 | 3.4:+16104219 | None:intergenic |
| AAACGTAAAGTTGTGGAAGG+AGG | 0.636655 | 3.4:-16100093 | MS.gene51811:CDS |
| TCGTTGCCATAAATTTGTGG+TGG | 0.644262 | 3.4:+16102488 | None:intergenic |
| AAGATGTTGAATTTGCAAGT+GGG | 0.649561 | 3.4:+16104220 | None:intergenic |
| ACAAGTAGTATACAAGGACA+AGG | 0.651454 | 3.4:-16102284 | MS.gene51811:CDS |
| CTGCAAGTTTACCTTCTGCG+TGG | 0.655416 | 3.4:-16102523 | MS.gene51811:CDS |
| ATTGCCGAATTCAAGCGTAA+CGG | 0.711887 | 3.4:-16100399 | MS.gene51811:CDS |
| GCAAGTGGGTCAGTGCCAGG+AGG | 0.726366 | 3.4:+16104234 | None:intergenic |
| CAAGTAGTATACAAGGACAA+GGG | 0.731447 | 3.4:-16102283 | MS.gene51811:CDS |
| AATGTGCACATTATGCAATG+TGG | 0.739375 | 3.4:-16100049 | MS.gene51811:CDS |
| GCGGTGTAAAGAGAAACAGG+AGG | 0.820151 | 3.4:+16104192 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACATTTTTTAAAAATG+TGG | - | chr3.4:16101480-16101499 | MS.gene51811:intron | 10.0% |
| !! | AATATTAAAAGGATGAAAAT+TGG | - | chr3.4:16102359-16102378 | MS.gene51811:CDS | 15.0% |
| !! | CATATATTGTTAATAGAATT+GGG | - | chr3.4:16101561-16101580 | MS.gene51811:intron | 15.0% |
| !! | TAATACAAATAATTGTCAAA+TGG | - | chr3.4:16101286-16101305 | MS.gene51811:intron | 15.0% |
| !! | TATAATATCAATTGTTAATC+AGG | - | chr3.4:16103028-16103047 | MS.gene51811:intron | 15.0% |
| !! | TATGATAAATAAATATCATG+TGG | - | chr3.4:16103457-16103476 | MS.gene51811:intron | 15.0% |
| !! | TCATATATTGTTAATAGAAT+TGG | - | chr3.4:16101560-16101579 | MS.gene51811:intron | 15.0% |
| !! | TCCAATTAAGATAAAAATAA+CGG | + | chr3.4:16102425-16102444 | None:intergenic | 15.0% |
| !! | TTTAATACAAATAATGTCAA+TGG | - | chr3.4:16101033-16101052 | MS.gene51811:intron | 15.0% |
| !!! | ATTAAGTAAAAATAGTCTTT+TGG | - | chr3.4:16103503-16103522 | MS.gene51811:intron | 15.0% |
| !!! | TTAAGTAAAAATAGTCTTTT+GGG | - | chr3.4:16103504-16103523 | MS.gene51811:intron | 15.0% |
| !! | AAAAAATACTTGTTTGTTCA+AGG | + | chr3.4:16103607-16103626 | None:intergenic | 20.0% |
| !! | AAAAGTGAGAACAATAAAAT+AGG | - | chr3.4:16101605-16101624 | MS.gene51811:intron | 20.0% |
| !! | AAAGTGAGAACAATAAAATA+GGG | - | chr3.4:16101606-16101625 | MS.gene51811:intron | 20.0% |
| !! | ATTGTCTACAATATAGAATA+AGG | + | chr3.4:16102243-16102262 | None:intergenic | 20.0% |
| !! | ATTTGAAAACTAAGATCAAA+AGG | + | chr3.4:16100367-16100386 | None:intergenic | 20.0% |
| !! | CAAAATAAATAAAGAACAAG+TGG | + | chr3.4:16103336-16103355 | None:intergenic | 20.0% |
| !! | TTATCTATAGATATACATCA+AGG | + | chr3.4:16103698-16103717 | None:intergenic | 20.0% |
| !! | TTTGAAAACTAAGATCAAAA+GGG | + | chr3.4:16100366-16100385 | None:intergenic | 20.0% |
| !!! | ACCGTTATTTTTATCTTAAT+TGG | - | chr3.4:16102421-16102440 | MS.gene51811:CDS | 20.0% |
| !!! | ATAATCAGGGTTTTTAAAAT+GGG | - | chr3.4:16100843-16100862 | MS.gene51811:intron | 20.0% |
| !!! | GAATAAGTTGAATACAATAA+TGG | + | chr3.4:16103259-16103278 | None:intergenic | 20.0% |
| !!! | GGTTTTTAAAAGTTGAAAAA+AGG | + | chr3.4:16103114-16103133 | None:intergenic | 20.0% |
| !!! | TCATAATTAGGGTTTTTAAA+TGG | - | chr3.4:16100791-16100810 | MS.gene51811:intron | 20.0% |
| !!! | TCATAGTTAGAGTTTTAAAA+TGG | - | chr3.4:16100695-16100714 | MS.gene51811:intron | 20.0% |
| !!! | TTTCTTATGTTATGTCATTT+GGG | - | chr3.4:16100406-16100425 | MS.gene51811:CDS | 20.0% |
| !!! | TTTCTTATGTTTTTTCATCT+GGG | - | chr3.4:16100239-16100258 | MS.gene51811:CDS | 20.0% |
| !!! | TTTTCTTATGTTATGTCATT+TGG | - | chr3.4:16100405-16100424 | MS.gene51811:CDS | 20.0% |
| !!! | TTTTCTTATGTTTTTTCATC+TGG | - | chr3.4:16100238-16100257 | MS.gene51811:CDS | 20.0% |
| !!! | TTTTTTCTTCTTTGTTAATG+TGG | - | chr3.4:16101233-16101252 | MS.gene51811:intron | 20.0% |
| ! | AAATTCAAAACCCTAACATA+CGG | + | chr3.4:16101656-16101675 | None:intergenic | 25.0% |
| ! | AACAAATAAAATGAGCAACT+TGG | + | chr3.4:16103758-16103777 | None:intergenic | 25.0% |
| ! | AACCAACAGATTATCAAAAT+TGG | - | chr3.4:16100123-16100142 | MS.gene51811:CDS | 25.0% |
| ! | AAGAAGAAAAAACATACAAG+TGG | + | chr3.4:16101225-16101244 | None:intergenic | 25.0% |
| ! | AATACAAATAATGTCAATGG+TGG | - | chr3.4:16101036-16101055 | MS.gene51811:intron | 25.0% |
| ! | ACAAATAAAATGAGCAACTT+GGG | + | chr3.4:16103757-16103776 | None:intergenic | 25.0% |
| ! | ATTCGAAAACAATGATCAAA+AGG | + | chr3.4:16100200-16100219 | None:intergenic | 25.0% |
| ! | CATTTACTAATTAACTCTGT+AGG | - | chr3.4:16102497-16102516 | MS.gene51811:CDS | 25.0% |
| ! | CTACAGAGTTAATTAGTAAA+TGG | + | chr3.4:16102499-16102518 | None:intergenic | 25.0% |
| ! | GACAGAACAAGAATATTAAA+AGG | - | chr3.4:16102348-16102367 | MS.gene51811:CDS | 25.0% |
| ! | GTTGGAATTCATCTTAATTA+GGG | - | chr3.4:16100633-16100652 | MS.gene51811:intron | 25.0% |
| ! | TGTTGGAATTCATCTTAATT+AGG | - | chr3.4:16100632-16100651 | MS.gene51811:intron | 25.0% |
| ! | TGTTTCAAAGAAATGAAGTT+TGG | + | chr3.4:16103423-16103442 | None:intergenic | 25.0% |
| ! | TTCGAAAACAATGATCAAAA+GGG | + | chr3.4:16100199-16100218 | None:intergenic | 25.0% |
| !! | AACAACAATAGTCTTTTAGT+AGG | - | chr3.4:16102972-16102991 | MS.gene51811:intron | 25.0% |
| !! | ATAGCGTGATTTTCATAATT+AGG | - | chr3.4:16100779-16100798 | MS.gene51811:intron | 25.0% |
| !! | TAGCGTGATTTTCATAATTA+GGG | - | chr3.4:16100780-16100799 | MS.gene51811:intron | 25.0% |
| !! | TTCTTATGTTATGTCATTTG+GGG | - | chr3.4:16100407-16100426 | MS.gene51811:CDS | 25.0% |
| !!! | AATTTTGATAATCTGTTGGT+TGG | + | chr3.4:16100124-16100143 | None:intergenic | 25.0% |
| !!! | ATCCAATTTTGATAATCTGT+TGG | + | chr3.4:16100128-16100147 | None:intergenic | 25.0% |
| !!! | ATGAAATAGTGGATAAGTTT+TGG | - | chr3.4:16100561-16100580 | MS.gene51811:intron | 25.0% |
| !!! | ATTTTGATAATCTGTTGGTT+GGG | + | chr3.4:16100123-16100142 | None:intergenic | 25.0% |
| !!! | CATAATCAGGGTTTTTAAAA+TGG | - | chr3.4:16100842-16100861 | MS.gene51811:intron | 25.0% |
| !!! | CTTAATTAGGGTTTTTAGAA+TGG | - | chr3.4:16100645-16100664 | MS.gene51811:intron | 25.0% |
| !!! | GTTAGGGTTTTGAATTTTAT+TGG | - | chr3.4:16101659-16101678 | MS.gene51811:intron | 25.0% |
| !!! | TTCATTTTAACGTAGTTGTT+TGG | - | chr3.4:16100330-16100349 | MS.gene51811:CDS | 25.0% |
| !!! | TTTTAGAATGGAAATGATTG+TGG | - | chr3.4:16100657-16100676 | MS.gene51811:intron | 25.0% |
| AAAGATGTTGAATTTGCAAG+TGG | + | chr3.4:16100074-16100093 | None:intergenic | 30.0% | |
| AACAATGAGGACCTTATATA+CGG | - | chr3.4:16103544-16103563 | MS.gene51811:intron | 30.0% | |
| AACACAACACTAAACTCATT+TGG | + | chr3.4:16102787-16102806 | None:intergenic | 30.0% | |
| AAGATGTTGAATTTGCAAGT+GGG | + | chr3.4:16100073-16100092 | None:intergenic | 30.0% | |
| AATGCCATTATTAGACATCA+AGG | + | chr3.4:16103862-16103881 | None:intergenic | 30.0% | |
| AATGTGAAGTTCTGTTAAGT+GGG | - | chr3.4:16100609-16100628 | MS.gene51811:intron | 30.0% | |
| AATTCAAAACCCTAACATAC+GGG | + | chr3.4:16101655-16101674 | None:intergenic | 30.0% | |
| ACCGCAACAAATACTTTAAT+CGG | - | chr3.4:16104104-16104123 | MS.gene51811:intron | 30.0% | |
| ACTCAGAAACATTCAACTAA+TGG | + | chr3.4:16103812-16103831 | None:intergenic | 30.0% | |
| AGAAGATGAATGATGATAGT+CGG | - | chr3.4:16101505-16101524 | MS.gene51811:intron | 30.0% | |
| ATAATTCAGGGATAACAGAA+GGG | - | chr3.4:16103056-16103075 | MS.gene51811:intron | 30.0% | |
| ATAGGACAATATGGATATCA+TGG | - | chr3.4:16101373-16101392 | MS.gene51811:intron | 30.0% | |
| ATCAGGGAATGATGAATAAT+AGG | + | chr3.4:16100024-16100043 | None:intergenic | 30.0% | |
| ATTTAGCGTTCACAAATGAA+AGG | - | chr3.4:16100749-16100768 | MS.gene51811:intron | 30.0% | |
| CAAATAAAATGAGCAACTTG+GGG | + | chr3.4:16103756-16103775 | None:intergenic | 30.0% | |
| CAAGATTAATTGTAACAGCA+GGG | - | chr3.4:16103980-16103999 | MS.gene51811:intron | 30.0% | |
| CATATATCAAACATCTTGCT+GGG | - | chr3.4:16102127-16102146 | MS.gene51811:intron | 30.0% | |
| CTTACAAGATCATATCTGAT+AGG | + | chr3.4:16100167-16100186 | None:intergenic | 30.0% | |
| GATATCCATATTGTCCTATT+CGG | + | chr3.4:16101372-16101391 | None:intergenic | 30.0% | |
| GATGTCTAGTTATGAAATAG+TGG | - | chr3.4:16100550-16100569 | MS.gene51811:intron | 30.0% | |
| GCTATCTATATTGTCCTATT+CGG | + | chr3.4:16101119-16101138 | None:intergenic | 30.0% | |
| GTATGAAAATAAGAGAACCA+TGG | + | chr3.4:16102645-16102664 | None:intergenic | 30.0% | |
| GTTGCATGTAATCTTACAAA+AGG | + | chr3.4:16102192-16102211 | None:intergenic | 30.0% | |
| GTTTAGCTAATTAACACTGT+AGG | - | chr3.4:16102473-16102492 | MS.gene51811:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACT+TGG | - | chr3.4:16104028-16104047 | MS.gene51811:intron | 30.0% | |
| TAATGTGAAGTTCTGTTAAG+TGG | - | chr3.4:16100608-16100627 | MS.gene51811:intron | 30.0% | |
| TCAAATCCAAAAATCGATGT+CGG | - | chr3.4:16104059-16104078 | MS.gene51811:intron | 30.0% | |
| TGCTTAGAAATTCTGTACTT+CGG | - | chr3.4:16103395-16103414 | MS.gene51811:intron | 30.0% | |
| TTCAATGCTTCTAATATTGC+AGG | - | chr3.4:16101711-16101730 | MS.gene51811:intron | 30.0% | |
| TTGATGTCTAATAATGGCAT+TGG | - | chr3.4:16103861-16103880 | MS.gene51811:intron | 30.0% | |
| TTTAGTAGGAGTAGATTACA+TGG | - | chr3.4:16102986-16103005 | MS.gene51811:intron | 30.0% | |
| ! | GTTTTCAATTTTCACCTTGT+TGG | - | chr3.4:16104281-16104300 | MS.gene51811:CDS | 30.0% |
| !! | AGAGTATCGTAAAACAATAG+TGG | + | chr3.4:16101012-16101031 | None:intergenic | 30.0% |
| !! | CAACTTTTAAAAACCATTGC+CGG | - | chr3.4:16103119-16103138 | MS.gene51811:intron | 30.0% |
| !! | GGAAATAAAAAGTGTTCTTC+TGG | - | chr3.4:16102721-16102740 | MS.gene51811:intron | 30.0% |
| !! | TAATTTTGACGACAACAATG+AGG | - | chr3.4:16103531-16103550 | MS.gene51811:intron | 30.0% |
| !! | TGCATTTTGTTGTAGTTGTT+AGG | - | chr3.4:16100516-16100535 | MS.gene51811:intron | 30.0% |
| !!! | TTACGTGCATTTTAGCTAAA+TGG | + | chr3.4:16102523-16102542 | None:intergenic | 30.0% |
| AAAAGCTGCCAAGAAAATCA+AGG | - | chr3.4:16103929-16103948 | MS.gene51811:intron | 35.0% | |
| AAGAAACGTAAAGTTGTGGA+AGG | - | chr3.4:16104194-16104213 | MS.gene51811:CDS | 35.0% | |
| AATCAGGTCTCCATAATTCA+GGG | - | chr3.4:16103044-16103063 | MS.gene51811:intron | 35.0% | |
| AATGTGCACATTATGCAATG+TGG | - | chr3.4:16104241-16104260 | MS.gene51811:CDS | 35.0% | |
| ACAAGTAGTATACAAGGACA+AGG | - | chr3.4:16102006-16102025 | MS.gene51811:intron | 35.0% | |
| ACATAATGCACACACTTGTA+TGG | - | chr3.4:16102281-16102300 | MS.gene51811:CDS | 35.0% | |
| ACTGACACAAGTAGTATACA+AGG | - | chr3.4:16102000-16102019 | MS.gene51811:intron | 35.0% | |
| AGAACCATGAACAAGAGAAT+AGG | + | chr3.4:16102396-16102415 | None:intergenic | 35.0% | |
| AGATGAAGACAGGCTATAAA+TGG | - | chr3.4:16102744-16102763 | MS.gene51811:intron | 35.0% | |
| ATACAAGGACAAGGGTTAAT+TGG | - | chr3.4:16102015-16102034 | MS.gene51811:intron | 35.0% | |
| ATATCTAGAAGTCAAACTCG+TGG | - | chr3.4:16101160-16101179 | MS.gene51811:intron | 35.0% | |
| ATCTACATTACACACTTAGC+CGG | - | chr3.4:16104005-16104024 | MS.gene51811:intron | 35.0% | |
| CAAGTAGTATACAAGGACAA+GGG | - | chr3.4:16102007-16102026 | MS.gene51811:intron | 35.0% | |
| CATAATTCAGGGATAACAGA+AGG | - | chr3.4:16103055-16103074 | MS.gene51811:intron | 35.0% | |
| CCGCAACAAATACTTTAATC+GGG | - | chr3.4:16104105-16104124 | MS.gene51811:intron | 35.0% | |
| CTTCTGTTATCCCTGAATTA+TGG | + | chr3.4:16103057-16103076 | None:intergenic | 35.0% | |
| GAAAATAAGAGAACCATGGT+GGG | + | chr3.4:16102641-16102660 | None:intergenic | 35.0% | |
| GCAAGATTAATTGTAACAGC+AGG | - | chr3.4:16103979-16103998 | MS.gene51811:intron | 35.0% | |
| GCATATATCAAACATCTTGC+TGG | - | chr3.4:16102126-16102145 | MS.gene51811:intron | 35.0% | |
| GCTTAGAAATTCTGTACTTC+GGG | - | chr3.4:16103396-16103415 | MS.gene51811:intron | 35.0% | |
| GGTGAAAATTGAAAACTGTC+TGG | + | chr3.4:16104277-16104296 | None:intergenic | 35.0% | |
| GTCAAAGAAACGTAAAGTTG+TGG | - | chr3.4:16104190-16104209 | MS.gene51811:CDS | 35.0% | |
| GTGAGAACAATAAAATAGGG+AGG | - | chr3.4:16101609-16101628 | MS.gene51811:intron | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | + | chr3.4:16104027-16104046 | None:intergenic | 35.0% | |
| GTTGCCTTGATGTCTAATAA+TGG | - | chr3.4:16103855-16103874 | MS.gene51811:intron | 35.0% | |
| TAAAATGCACGTAAGATAGC+TGG | - | chr3.4:16102529-16102548 | MS.gene51811:CDS | 35.0% | |
| TAATCAGGTCTCCATAATTC+AGG | - | chr3.4:16103043-16103062 | MS.gene51811:intron | 35.0% | |
| TATCTGATAGGTTCAGATTG+TGG | + | chr3.4:16100155-16100174 | None:intergenic | 35.0% | |
| TCTTATGAAAGTCACATAGC+TGG | - | chr3.4:16101910-16101929 | MS.gene51811:intron | 35.0% | |
| TGAAAATAAGAGAACCATGG+TGG | + | chr3.4:16102642-16102661 | None:intergenic | 35.0% | |
| TGATTTGATCCCGTATGTTA+GGG | - | chr3.4:16101643-16101662 | MS.gene51811:intron | 35.0% | |
| TGTACCTATTCTCTTGTTCA+TGG | - | chr3.4:16102389-16102408 | MS.gene51811:CDS | 35.0% | |
| TGTTATTGACAACACCGAAT+AGG | - | chr3.4:16101355-16101374 | MS.gene51811:intron | 35.0% | |
| TTATCTTAATTGGACCCACA+AGG | - | chr3.4:16102431-16102450 | MS.gene51811:CDS | 35.0% | |
| TTCGCATGAGATGTAATAGT+AGG | + | chr3.4:16101973-16101992 | None:intergenic | 35.0% | |
| ! | CAAAAGCCACAAAGTGATTT+TGG | - | chr3.4:16102612-16102631 | MS.gene51811:intron | 35.0% |
| ! | CCCGATTAAAGTATTTGTTG+CGG | + | chr3.4:16104108-16104127 | None:intergenic | 35.0% |
| ! | GATTAAAGTATTTGTTGCGG+TGG | + | chr3.4:16104105-16104124 | None:intergenic | 35.0% |
| ! | TTATGTTATGTCATTTGGGG+TGG | - | chr3.4:16100410-16100429 | MS.gene51811:CDS | 35.0% |
| ! | TTGATTTGATCCCGTATGTT+AGG | - | chr3.4:16101642-16101661 | MS.gene51811:intron | 35.0% |
| ! | TTGTGGCTTTTGCAAAATCA+CGG | + | chr3.4:16102604-16102623 | None:intergenic | 35.0% |
| ! | TTTTTCGCAGTGGATAAGTA+AGG | + | chr3.4:16102695-16102714 | None:intergenic | 35.0% |
| !! | AGTGTTTTAAGTCGTGATTG+CGG | + | chr3.4:16100958-16100977 | None:intergenic | 35.0% |
| !! | CTATTCGGTGTTGTCAATAA+CGG | + | chr3.4:16101104-16101123 | None:intergenic | 35.0% |
| !! | TATTCGGTGTTGTCAATAAC+AGG | + | chr3.4:16101103-16101122 | None:intergenic | 35.0% |
| !! | TTCTTGGCAGCTTTTTGAAA+TGG | + | chr3.4:16103924-16103943 | None:intergenic | 35.0% |
| !!! | CTATAAATGGAGGGCATTTT+GGG | - | chr3.4:16102757-16102776 | MS.gene51811:intron | 35.0% |
| !!! | CTTCTTTGGTTTTGGTTGAT+CGG | + | chr3.4:16104150-16104169 | None:intergenic | 35.0% |
| !!! | TATTTTTTGCGATCCACGAT+TGG | - | chr3.4:16103619-16103638 | MS.gene51811:intron | 35.0% |
| AAACGTAAAGTTGTGGAAGG+AGG | - | chr3.4:16104197-16104216 | MS.gene51811:CDS | 40.0% | |
| AACACCGTTACGCTTGAATT+CGG | + | chr3.4:16103898-16103917 | None:intergenic | 40.0% | |
| AACCTACGAGTCACAAAAAG+TGG | + | chr3.4:16103838-16103857 | None:intergenic | 40.0% | |
| AAGTTCTGTTAAGTGGGTGT+TGG | - | chr3.4:16100615-16100634 | MS.gene51811:intron | 40.0% | |
| ACATGGCCACCACAAATTTA+TGG | - | chr3.4:16101796-16101815 | MS.gene51811:intron | 40.0% | |
| ATCCACTGCGAAAAAGTTAC+TGG | - | chr3.4:16102700-16102719 | MS.gene51811:intron | 40.0% | |
| ATTGCCGAATTCAAGCGTAA+CGG | - | chr3.4:16103891-16103910 | MS.gene51811:intron | 40.0% | |
| CAACACCGAATAGGACAATA+TGG | - | chr3.4:16101111-16101130 | MS.gene51811:intron | 40.0% | |
| CACTTCACATCTCAAAGCTT+TGG | + | chr3.4:16101863-16101882 | None:intergenic | 40.0% | |
| CCAGCAATTTGACTATGACA+TGG | - | chr3.4:16102820-16102839 | MS.gene51811:intron | 40.0% | |
| CCATGTCATAGTCAAATTGC+TGG | + | chr3.4:16102823-16102842 | None:intergenic | 40.0% | |
| CGATCAACCAAAACCAAAGA+AGG | - | chr3.4:16104148-16104167 | MS.gene51811:CDS | 40.0% | |
| CGATCTTTCTTGAAAGCTGT+AGG | - | chr3.4:16103211-16103230 | MS.gene51811:intron | 40.0% | |
| CGTTATTGACAACACCGAAT+AGG | - | chr3.4:16101102-16101121 | MS.gene51811:intron | 40.0% | |
| CTGTAGCAGATATAATGTCG+TGG | + | chr3.4:16102929-16102948 | None:intergenic | 40.0% | |
| CTTCTAATATTGCAGGCTGT+TGG | - | chr3.4:16101718-16101737 | MS.gene51811:intron | 40.0% | |
| CTTTACCCTATTGAACTGCA+AGG | - | chr3.4:16103779-16103798 | MS.gene51811:intron | 40.0% | |
| GAAGACAGGCTATAAATGGA+GGG | - | chr3.4:16102748-16102767 | MS.gene51811:intron | 40.0% | |
| GAGTGCTATCATTTCCTGTA+TGG | + | chr3.4:16103570-16103589 | None:intergenic | 40.0% | |
| GCTTGAATTCGGCAATAGAT+GGG | + | chr3.4:16103887-16103906 | None:intergenic | 40.0% | |
| GTCTCGTTGCCATAAATTTG+TGG | + | chr3.4:16101808-16101827 | None:intergenic | 40.0% | |
| GTGTTGTCAATAACGGTTAG+CGG | + | chr3.4:16101097-16101116 | None:intergenic | 40.0% | |
| TAGCTGGTTATGTGCATGTT+TGG | - | chr3.4:16102545-16102564 | MS.gene51811:CDS | 40.0% | |
| TATACCTCTGTAGTTAGCAG+AGG | + | chr3.4:16102952-16102971 | None:intergenic | 40.0% | |
| TCGTTGCCATAAATTTGTGG+TGG | + | chr3.4:16101805-16101824 | None:intergenic | 40.0% | |
| TGAAGACAGGCTATAAATGG+AGG | - | chr3.4:16102747-16102766 | MS.gene51811:intron | 40.0% | |
| TGGCGTGATTGTCATAATCA+GGG | - | chr3.4:16100830-16100849 | MS.gene51811:intron | 40.0% | |
| TGTTGCTGCTGGAAATTGTA+GGG | + | chr3.4:16099993-16100012 | None:intergenic | 40.0% | |
| TTACGCCTTGCAGTTCAATA+GGG | + | chr3.4:16103787-16103806 | None:intergenic | 40.0% | |
| TTCCTGTATGGCCGTATATA+AGG | + | chr3.4:16103558-16103577 | None:intergenic | 40.0% | |
| TTGTTGCTGCTGGAAATTGT+AGG | + | chr3.4:16099994-16100013 | None:intergenic | 40.0% | |
| TTTACGCCTTGCAGTTCAAT+AGG | + | chr3.4:16103788-16103807 | None:intergenic | 40.0% | |
| ! | AAGCTTTGGTGACTTTGGTT+TGG | + | chr3.4:16101849-16101868 | None:intergenic | 40.0% |
| ! | ATCAACCTGTTTCTTAGGCT+CGG | + | chr3.4:16102058-16102077 | None:intergenic | 40.0% |
| ! | CTGAGCAACCTTGATTTTCT+TGG | + | chr3.4:16103940-16103959 | None:intergenic | 40.0% |
| ! | GAGCTTGGTATTGTTGTTGA+GGG | + | chr3.4:16099968-16099987 | None:intergenic | 40.0% |
| ! | GCAGAATCAACCTGTTTCTT+AGG | + | chr3.4:16102063-16102082 | None:intergenic | 40.0% |
| ! | TAAAGTATTTGTTGCGGTGG+CGG | + | chr3.4:16104102-16104121 | None:intergenic | 40.0% |
| ! | TCAAGTTCTGATGCCTTCTT+TGG | + | chr3.4:16104164-16104183 | None:intergenic | 40.0% |
| ! | TCAATGGTGGCTTTTGTTAG+TGG | - | chr3.4:16101049-16101068 | MS.gene51811:intron | 40.0% |
| ! | TCTCAAAGCTTTGGTGACTT+TGG | + | chr3.4:16101854-16101873 | None:intergenic | 40.0% |
| ! | TGAGCTTGGTATTGTTGTTG+AGG | + | chr3.4:16099969-16099988 | None:intergenic | 40.0% |
| ! | TTGATAATCTGTTGGTTGGG+CGG | + | chr3.4:16100120-16100139 | None:intergenic | 40.0% |
| !! | GAAACAGGTTGATTCTGCAA+CGG | - | chr3.4:16102065-16102084 | MS.gene51811:intron | 40.0% |
| !! | TCTGATGCCTTCTTTGGTTT+TGG | + | chr3.4:16104158-16104177 | None:intergenic | 40.0% |
| !! | TTGGTGACTTTGGTTTGGTT+AGG | + | chr3.4:16101844-16101863 | None:intergenic | 40.0% |
| !!! | GCTATAAATGGAGGGCATTT+TGG | - | chr3.4:16102756-16102775 | MS.gene51811:intron | 40.0% |
| !!! | TTCCAGTAACTTTTTCGCAG+TGG | + | chr3.4:16102705-16102724 | None:intergenic | 40.0% |
| AAAACCAGTGTTGCCAATCG+TGG | + | chr3.4:16103635-16103654 | None:intergenic | 45.0% | |
| AAAATCGATGTCGGCACTAG+TGG | - | chr3.4:16104068-16104087 | MS.gene51811:intron | 45.0% | |
| AAGGCAAGATAGGATCACTG+TGG | - | chr3.4:16102450-16102469 | MS.gene51811:CDS | 45.0% | |
| ACATGCTGCTATGGTGAAGA+AGG | - | chr3.4:16104310-16104329 | MS.gene51811:CDS | 45.0% | |
| AGAAGATGCAGCTCCAAAAG+GGG | + | chr3.4:16103145-16103164 | None:intergenic | 45.0% | |
| AGGCAAGATAGGATCACTGT+GGG | - | chr3.4:16102451-16102470 | MS.gene51811:CDS | 45.0% | |
| AGTGATCCTATCTTGCCTTG+TGG | + | chr3.4:16102449-16102468 | None:intergenic | 45.0% | |
| AGTTTACCTTCTGCGTGGAA+TGG | - | chr3.4:16101772-16101791 | MS.gene51811:intron | 45.0% | |
| ATGACTGTGAGTGTTTCACG+TGG | - | chr3.4:16101412-16101431 | MS.gene51811:intron | 45.0% | |
| ATGGAACGATACCGCAATTC+TGG | - | chr3.4:16100810-16100829 | MS.gene51811:intron | 45.0% | |
| ATGGAATGATACCGCGATTG+TGG | - | chr3.4:16100714-16100733 | MS.gene51811:intron | 45.0% | |
| CAGAAGATGCAGCTCCAAAA+GGG | + | chr3.4:16103146-16103165 | None:intergenic | 45.0% | |
| CGCTTGAATTCGGCAATAGA+TGG | + | chr3.4:16103888-16103907 | None:intergenic | 45.0% | |
| CTGGCGTGATTGTCATAATC+AGG | - | chr3.4:16100829-16100848 | MS.gene51811:intron | 45.0% | |
| GAATTCAAGCGTAACGGTGT+TGG | - | chr3.4:16103897-16103916 | MS.gene51811:intron | 45.0% | |
| GACCTTATATACGGCCATAC+AGG | - | chr3.4:16103553-16103572 | MS.gene51811:intron | 45.0% | |
| GAGCAACTTGGGGAAAATGT+AGG | + | chr3.4:16103746-16103765 | None:intergenic | 45.0% | |
| GAGGATGAAGTGAAGGATCA+GGG | + | chr3.4:16100040-16100059 | None:intergenic | 45.0% | |
| GCTAGACACTACTGAAATCG+AGG | + | chr3.4:16102891-16102910 | None:intergenic | 45.0% | |
| GGAAATTGTAGGGTTGAGCT+TGG | + | chr3.4:16099983-16100002 | None:intergenic | 45.0% | |
| GGGTTGCCAAAATCACTTTG+TGG | + | chr3.4:16102621-16102640 | None:intergenic | 45.0% | |
| GTGATCCTATCTTGCCTTGT+GGG | + | chr3.4:16102448-16102467 | None:intergenic | 45.0% | |
| TCACCATAGCAGCATGTTTC+TGG | + | chr3.4:16104307-16104326 | None:intergenic | 45.0% | |
| TCAGAAGATGCAGCTCCAAA+AGG | + | chr3.4:16103147-16103166 | None:intergenic | 45.0% | |
| TGACAATCACGCCAGAATTG+CGG | + | chr3.4:16100824-16100843 | None:intergenic | 45.0% | |
| TGTAGCGACAATCGCAGTAT+CGG | + | chr3.4:16100869-16100888 | None:intergenic | 45.0% | |
| ! | GTTCTTCTGGAGATGAAGAC+AGG | - | chr3.4:16102734-16102753 | MS.gene51811:intron | 45.0% |
| !!! | CTAGTGCCGACATCGATTTT+TGG | + | chr3.4:16104068-16104087 | None:intergenic | 45.0% |
| !!! | GACCACTTTTTGTGACTCGT+AGG | - | chr3.4:16103833-16103852 | MS.gene51811:intron | 45.0% |
| AATGTCGTGGCGTGTCATAG+CGG | + | chr3.4:16102916-16102935 | None:intergenic | 50.0% | |
| ACAGCCTCTGCTAACTACAG+AGG | - | chr3.4:16102945-16102964 | MS.gene51811:intron | 50.0% | |
| AGGCTCGGATTGCTTGACTA+CGG | + | chr3.4:16102043-16102062 | None:intergenic | 50.0% | |
| CACGCAGAAGGTAAACTTGC+AGG | + | chr3.4:16101769-16101788 | None:intergenic | 50.0% | |
| CATGTACCATTCCACGCAGA+AGG | + | chr3.4:16101781-16101800 | None:intergenic | 50.0% | |
| CTGCAAGTTTACCTTCTGCG+TGG | - | chr3.4:16101767-16101786 | MS.gene51811:intron | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | - | chr3.4:16104315-16104334 | MS.gene51811:CDS | 50.0% | |
| CTTCTGCGTGGAATGGTACA+TGG | - | chr3.4:16101779-16101798 | MS.gene51811:intron | 50.0% | |
| GACGCTTCTGACTTTCACTC+TGG | - | chr3.4:16101681-16101700 | MS.gene51811:intron | 50.0% | |
| GATCCTTCACTTCATCCTCC+TGG | - | chr3.4:16100041-16100060 | MS.gene51811:CDS | 50.0% | |
| GATTGTCGCTACAGCAAACG+AGG | - | chr3.4:16100876-16100895 | MS.gene51811:intron | 50.0% | |
| GCAATCCGAGCCTAAGAAAC+AGG | - | chr3.4:16102050-16102069 | MS.gene51811:intron | 50.0% | |
| GCGGTGTAAAGAGAAACAGG+AGG | + | chr3.4:16100101-16100120 | None:intergenic | 50.0% | |
| GGAGGATGAAGTGAAGGATC+AGG | + | chr3.4:16100041-16100060 | None:intergenic | 50.0% | |
| GTTGCAACGTTGACCACCAT+GGG | - | chr3.4:16102842-16102861 | MS.gene51811:intron | 50.0% | |
| TGACAATCACGCCACAATCG+CGG | + | chr3.4:16100728-16100747 | None:intergenic | 50.0% | |
| TGGCCAGAAACATGCTGCTA+TGG | - | chr3.4:16104301-16104320 | MS.gene51811:CDS | 50.0% | |
| TGGGCGGTGTAAAGAGAAAC+AGG | + | chr3.4:16100104-16100123 | None:intergenic | 50.0% | |
| TTGGACCCACAAGGCAAGAT+AGG | - | chr3.4:16102440-16102459 | MS.gene51811:CDS | 50.0% | |
| !! | AGGCTTGTTGTTGTTGCTGC+TGG | + | chr3.4:16100004-16100023 | None:intergenic | 50.0% |
| !! | ATGTGCATGTTTGGTGTCGC+TGG | - | chr3.4:16102554-16102573 | MS.gene51811:CDS | 50.0% |
| !! | CAGCATGTTTCTGGCCAACA+AGG | + | chr3.4:16104298-16104317 | None:intergenic | 50.0% |
| !! | GTGATTTTGGCAACCCACCA+TGG | - | chr3.4:16102625-16102644 | MS.gene51811:intron | 50.0% |
| !! | TCGGTACCTGGCTTTTCTTG+CGG | + | chr3.4:16104131-16104150 | None:intergenic | 50.0% |
| !! | TGTGCATGTTTGGTGTCGCT+GGG | - | chr3.4:16102555-16102574 | MS.gene51811:CDS | 50.0% |
| !!! | GGTTTTGGTTGATCGGTACC+TGG | + | chr3.4:16104143-16104162 | None:intergenic | 50.0% |
| AAGAAGGCAGGGTCAGTCAC+TGG | - | chr3.4:16104326-16104345 | MS.gene51811:CDS | 55.0% | |
| AGATCGTACAAGCCTGTCGC+AGG | + | chr3.4:16103197-16103216 | None:intergenic | 55.0% | |
| CGATCCACGATTGGCAACAC+TGG | - | chr3.4:16103628-16103647 | MS.gene51811:intron | 55.0% | |
| GAAGGAGGAGCTGCAGTTGA+TGG | - | chr3.4:16104212-16104231 | MS.gene51811:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | - | chr3.4:16104314-16104333 | MS.gene51811:CDS | 55.0% | |
| GGCTCGGATTGCTTGACTAC+GGG | + | chr3.4:16102042-16102061 | None:intergenic | 55.0% | |
| GGTTGCAACGTTGACCACCA+TGG | - | chr3.4:16102841-16102860 | MS.gene51811:intron | 55.0% | |
| GTGCCAGGAGGATGAAGTGA+AGG | + | chr3.4:16100047-16100066 | None:intergenic | 55.0% | |
| TTTGCAAGTGGGTCAGTGCC+AGG | + | chr3.4:16100062-16100081 | None:intergenic | 55.0% | |
| ! | AAACCATTGCCGGCCCCTTT+TGG | - | chr3.4:16103129-16103148 | MS.gene51811:intron | 55.0% |
| ! | AGTATTTGTTGCGGTGGCGG+TGG | + | chr3.4:16104099-16104118 | None:intergenic | 55.0% |
| ! | TGGGAGAAAGCATGCTGCTC+AGG | - | chr3.4:16102146-16102165 | MS.gene51811:CDS | 55.0% |
| ! | TTTTGACGTAGCGCCCATGG+TGG | + | chr3.4:16102858-16102877 | None:intergenic | 55.0% |
| !! | GCATTTTGACGTAGCGCCCA+TGG | + | chr3.4:16102861-16102880 | None:intergenic | 55.0% |
| AAGCCTGTCGCAGGTGTGCA+CGG | + | chr3.4:16103188-16103207 | None:intergenic | 60.0% | |
| ATACCGTGCACACCTGCGAC+AGG | - | chr3.4:16103182-16103201 | MS.gene51811:intron | 60.0% | |
| ATCGGGCCGCAAGAAAAGCC+AGG | - | chr3.4:16104122-16104141 | MS.gene51811:intron | 60.0% | |
| GATGCAGCTCCAAAAGGGGC+CGG | + | chr3.4:16103141-16103160 | None:intergenic | 60.0% | |
| GCAAGTGGGTCAGTGCCAGG+AGG | + | chr3.4:16100059-16100078 | None:intergenic | 65.0% | |
| GCTCCAAAAGGGGCCGGCAA+TGG | + | chr3.4:16103135-16103154 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 16099960 | 16104352 | 16099960 | ID=MS.gene51811 |
| chr3.4 | mRNA | 16099960 | 16104352 | 16099960 | ID=MS.gene51811.t1;Parent=MS.gene51811 |
| chr3.4 | exon | 16104131 | 16104352 | 16104131 | ID=MS.gene51811.t1.exon1;Parent=MS.gene51811.t1 |
| chr3.4 | CDS | 16104131 | 16104352 | 16104131 | ID=cds.MS.gene51811.t1;Parent=MS.gene51811.t1 |
| chr3.4 | exon | 16102145 | 16102579 | 16102145 | ID=MS.gene51811.t1.exon2;Parent=MS.gene51811.t1 |
| chr3.4 | CDS | 16102145 | 16102579 | 16102145 | ID=cds.MS.gene51811.t1;Parent=MS.gene51811.t1 |
| chr3.4 | exon | 16099960 | 16100457 | 16099960 | ID=MS.gene51811.t1.exon3;Parent=MS.gene51811.t1 |
| chr3.4 | CDS | 16099960 | 16100457 | 16099960 | ID=cds.MS.gene51811.t1;Parent=MS.gene51811.t1 |
| Gene Sequence |
| Protein sequence |
