Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51886.t1 | XP_003624615.1 | 98.9 | 265 | 1 | 1 | 1 | 265 | 1 | 263 | 2.60E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51886.t1 | B3H615 | 78.9 | 265 | 49 | 4 | 1 | 263 | 1 | 260 | 1.8e-118 | 426.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51886.t1 | A2Q5P5 | 98.9 | 265 | 1 | 1 | 1 | 265 | 1 | 263 | 1.9e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51886.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51886.t1 | MTR_7g085450 | 99.245 | 265 | 0 | 1 | 1 | 265 | 1 | 263 | 0.0 | 550 |
| MS.gene51886.t1 | MTR_1g046460 | 30.888 | 259 | 146 | 6 | 9 | 258 | 3 | 237 | 1.66e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51886.t1 | AT1G54390 | 79.623 | 265 | 47 | 4 | 1 | 263 | 1 | 260 | 5.97e-143 | 402 |
| MS.gene51886.t1 | AT1G54390 | 79.623 | 265 | 47 | 4 | 1 | 263 | 1 | 260 | 5.97e-143 | 402 |
| MS.gene51886.t1 | AT1G54390 | 76.211 | 227 | 47 | 4 | 39 | 263 | 19 | 240 | 1.10e-113 | 327 |
| MS.gene51886.t1 | AT1G54390 | 76.211 | 227 | 47 | 4 | 39 | 263 | 19 | 240 | 1.10e-113 | 327 |
| MS.gene51886.t1 | AT1G54390 | 76.211 | 227 | 47 | 4 | 39 | 263 | 19 | 240 | 1.10e-113 | 327 |
| MS.gene51886.t1 | AT1G54390 | 77.922 | 231 | 44 | 4 | 1 | 229 | 1 | 226 | 5.43e-113 | 328 |
| MS.gene51886.t1 | AT1G54390 | 77.922 | 231 | 44 | 4 | 1 | 229 | 1 | 226 | 5.70e-113 | 327 |
| MS.gene51886.t1 | AT1G54390 | 81.768 | 181 | 29 | 3 | 85 | 263 | 1 | 179 | 1.79e-99 | 288 |
| MS.gene51886.t1 | AT3G24010 | 36.111 | 180 | 99 | 4 | 79 | 258 | 61 | 224 | 7.90e-30 | 112 |
Find 62 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAATTTCAGGTATCTTT+TGG | 0.176968 | 7.4:-21908404 | MS.gene51886:intron |
| TAGTCCTTCTTATGGCTTCC+TGG | 0.301453 | 7.4:+21908598 | None:intergenic |
| AGTCTACGTCGATGACTATT+TGG | 0.315508 | 7.4:-21910351 | MS.gene51886:CDS |
| AATCGAAGAGACTTGATTAC+AGG | 0.362393 | 7.4:-21908660 | MS.gene51886:CDS |
| ACACAGTATGTAGGTTCATT+TGG | 0.368463 | 7.4:+21908541 | None:intergenic |
| ACTTTGTCTGCTGCCTTGTC+TGG | 0.368542 | 7.4:+21909978 | None:intergenic |
| TGTAGGTTCATTTGGATCAA+TGG | 0.378225 | 7.4:+21908549 | None:intergenic |
| AAAAGAAATCGAGGCGAATC+AGG | 0.384479 | 7.4:-21909849 | MS.gene51886:CDS |
| GGATCATATAGTCCTTCTTA+TGG | 0.391014 | 7.4:+21908590 | None:intergenic |
| GTAGGTTCATTTGGATCAAT+GGG | 0.417965 | 7.4:+21908550 | None:intergenic |
| TACATACTGTGTTTGTCATC+AGG | 0.423437 | 7.4:-21908530 | MS.gene51886:intron |
| CTTTAGATCTTCAGCGAAGT+AGG | 0.427352 | 7.4:+21909174 | None:intergenic |
| TTGATTACAGGGAGAGAGAC+TGG | 0.434207 | 7.4:-21908648 | MS.gene51886:CDS |
| TTCTTATGGCTTCCTGGTGG+AGG | 0.438248 | 7.4:+21908604 | None:intergenic |
| AAGCTCAGCGGGCAATGTAT+TGG | 0.453107 | 7.4:+21910216 | None:intergenic |
| GCAGCAGACAAAGTACTGTA+TGG | 0.463935 | 7.4:-21909969 | MS.gene51886:CDS |
| CTCATCTCATGGCTCTAAGA+AGG | 0.470707 | 7.4:-21909942 | MS.gene51886:CDS |
| AGAAGTCTCTGAAGCTCAGC+GGG | 0.472014 | 7.4:+21910205 | None:intergenic |
| GTGGTAGTAATCTGCAAGTT+GGG | 0.493544 | 7.4:+21908170 | None:intergenic |
| GAAAAGCGCAGGCACGCATA+TGG | 0.503955 | 7.4:-21908691 | MS.gene51886:CDS |
| AACACAAGAGACAAGGTTCA+AGG | 0.504646 | 7.4:-21908206 | MS.gene51886:CDS |
| TGTATGGGGTTCTCATCTCA+TGG | 0.513570 | 7.4:-21909953 | MS.gene51886:CDS |
| TTAGACCAACACATGAATAG+TGG | 0.520946 | 7.4:+21908227 | None:intergenic |
| GGCACGACAAGCATATGAAC+TGG | 0.521248 | 7.4:-21909789 | MS.gene51886:intron |
| GAAGGACTATATGATCCCTA+TGG | 0.521889 | 7.4:-21908584 | MS.gene51886:CDS |
| TGTGGTAGTAATCTGCAAGT+TGG | 0.523029 | 7.4:+21908169 | None:intergenic |
| GGGATCGTTCATCGAGTTCA+CGG | 0.530503 | 7.4:+21910173 | None:intergenic |
| CAGCAGACAAAGTACTGTAT+GGG | 0.532458 | 7.4:-21909968 | MS.gene51886:CDS |
| ATGGGTTGATCAATATCCAT+AGG | 0.533374 | 7.4:+21908568 | None:intergenic |
| GATAGTGCCGAGGAGGTGAA+TGG | 0.537405 | 7.4:-21908252 | MS.gene51886:intron |
| TAATCAAGTCTCTTCGATTG+AGG | 0.541620 | 7.4:+21908664 | None:intergenic |
| AAAATGGCAATTGCACGCAC+TGG | 0.548966 | 7.4:-21910374 | MS.gene51886:CDS |
| TCCACCAGGAAGCCATAAGA+AGG | 0.551349 | 7.4:-21908602 | MS.gene51886:CDS |
| AAGATTTATCATTGACATTG+TGG | 0.551966 | 7.4:+21908151 | None:intergenic |
| TGGTTCCACTATTCATGTGT+TGG | 0.555308 | 7.4:-21908232 | MS.gene51886:CDS |
| ATTGAGTTTATGCACTGAGA+AGG | 0.558927 | 7.4:-21909819 | MS.gene51886:CDS |
| ACACAAGAGACAAGGTTCAA+GGG | 0.562098 | 7.4:-21908205 | MS.gene51886:CDS |
| AGACAAGGTTCAAGGGAAAG+TGG | 0.569480 | 7.4:-21908198 | MS.gene51886:CDS |
| TCCCTAAACCTGAAAAGCGC+AGG | 0.571245 | 7.4:-21908702 | MS.gene51886:CDS |
| CAATTACAATTACATGAATG+AGG | 0.576780 | 7.4:-21909900 | MS.gene51886:CDS |
| TCCTTCTTATGGCTTCCTGG+TGG | 0.577394 | 7.4:+21908601 | None:intergenic |
| TTAGGGACAATAGGAAGTGG+GGG | 0.580164 | 7.4:+21908718 | None:intergenic |
| GGTTTAGGGACAATAGGAAG+TGG | 0.584655 | 7.4:+21908715 | None:intergenic |
| TGGGTTGATCAATATCCATA+GGG | 0.596146 | 7.4:+21908569 | None:intergenic |
| TTCGCTGAAGATCTAAAGCA+AGG | 0.596239 | 7.4:-21909169 | MS.gene51886:intron |
| GAGAAGTCTCTGAAGCTCAG+CGG | 0.598711 | 7.4:+21910204 | None:intergenic |
| TCATCTCATGGCTCTAAGAA+GGG | 0.599282 | 7.4:-21909941 | MS.gene51886:CDS |
| TGATGACAAACACAGTATGT+AGG | 0.600981 | 7.4:+21908532 | None:intergenic |
| GTTTAGGGACAATAGGAAGT+GGG | 0.601691 | 7.4:+21908716 | None:intergenic |
| TTTGAGCTAATGCCTCCACC+AGG | 0.610776 | 7.4:-21908616 | MS.gene51886:CDS |
| CCATGTAAAACGACTTGATG+AGG | 0.613217 | 7.4:-21909203 | MS.gene51886:CDS |
| AGTGGAACCATTCACCTCCT+CGG | 0.620021 | 7.4:+21908245 | None:intergenic |
| TGATTACAGGGAGAGAGACT+GGG | 0.622459 | 7.4:-21908647 | MS.gene51886:CDS |
| ATCGAAGAGACTTGATTACA+GGG | 0.633832 | 7.4:-21908659 | MS.gene51886:CDS |
| TGTTATTCTTGATAGTGCCG+AGG | 0.646877 | 7.4:-21908262 | MS.gene51886:intron |
| TTTAGGGACAATAGGAAGTG+GGG | 0.647357 | 7.4:+21908717 | None:intergenic |
| AAGCTATGATAAACCAGACA+AGG | 0.648028 | 7.4:-21909991 | MS.gene51886:CDS |
| TCGTTCATCGAGTTCACGGA+CGG | 0.655630 | 7.4:+21910177 | None:intergenic |
| AGCAGACAAAGTACTGTATG+GGG | 0.659495 | 7.4:-21909967 | MS.gene51886:CDS |
| GAAAATGCGAAAAGAAATCG+AGG | 0.660931 | 7.4:-21909858 | MS.gene51886:CDS |
| TATTCTTGATAGTGCCGAGG+AGG | 0.680877 | 7.4:-21908259 | MS.gene51886:intron |
| TTGGTCTAACACAAGAGACA+AGG | 0.703698 | 7.4:-21908213 | MS.gene51886:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGGTAAATAATTTA+GGG | + | chr7.4:21908418-21908437 | None:intergenic | 10.0% |
| !! | TAAAAAAAGGTAAATAATTT+AGG | + | chr7.4:21908419-21908438 | None:intergenic | 10.0% |
| !!! | TTTTATATATAGCATTTATA+AGG | - | chr7.4:21908803-21908822 | MS.gene51886:intron | 10.0% |
| !! | AACAAAAAAGAAAATAAGAA+AGG | + | chr7.4:21909738-21909757 | None:intergenic | 15.0% |
| !! | AAGAATAACATAATAAAACT+CGG | + | chr7.4:21910258-21910277 | None:intergenic | 15.0% |
| !!! | AAATAATTTAGGGTTAAAAA+GGG | + | chr7.4:21908408-21908427 | None:intergenic | 15.0% |
| !!! | ATCATTATTTTTTGTTGTTA+TGG | - | chr7.4:21908500-21908519 | MS.gene51886:intron | 15.0% |
| !!! | TAAATAATTTAGGGTTAAAA+AGG | + | chr7.4:21908409-21908428 | None:intergenic | 15.0% |
| !! | CATCTGTTTAATAGAAAATT+TGG | + | chr7.4:21908294-21908313 | None:intergenic | 20.0% |
| !!! | AAAGAGTATGTTCAATATTT+TGG | - | chr7.4:21909522-21909541 | MS.gene51886:intron | 20.0% |
| !!! | AATAATTTAGGGTTAAAAAG+GGG | + | chr7.4:21908407-21908426 | None:intergenic | 20.0% |
| !!! | TCACATTTTATTTTATCAGA+GGG | - | chr7.4:21909758-21909777 | MS.gene51886:intron | 20.0% |
| !!! | TGTCAATGAAATTGTTTTTT+TGG | - | chr7.4:21909695-21909714 | MS.gene51886:intron | 20.0% |
| !!! | TTCACATTTTATTTTATCAG+AGG | - | chr7.4:21909757-21909776 | MS.gene51886:intron | 20.0% |
| !!! | TTTTAGTAGGAATTTACATT+GGG | + | chr7.4:21908380-21908399 | None:intergenic | 20.0% |
| !!! | TTTTTAGTAGGAATTTACAT+TGG | + | chr7.4:21908381-21908400 | None:intergenic | 20.0% |
| ! | AAAAAATCGGTGAAAAATTG+GGG | + | chr7.4:21908261-21908280 | None:intergenic | 25.0% |
| ! | AAAAATTGGGGGAAAAATTA+GGG | + | chr7.4:21908249-21908268 | None:intergenic | 25.0% |
| ! | AAATCAGAATGCAAATCAAA+TGG | + | chr7.4:21909395-21909414 | None:intergenic | 25.0% |
| ! | AACAATTTCATTGACAAAGT+AGG | + | chr7.4:21909691-21909710 | None:intergenic | 25.0% |
| ! | ACTTAATCACATTACCATTA+AGG | + | chr7.4:21908894-21908913 | None:intergenic | 25.0% |
| ! | AGTACTTTAATATCAACAGA+GGG | + | chr7.4:21908442-21908461 | None:intergenic | 25.0% |
| ! | CAATTACAATTACATGAATG+AGG | - | chr7.4:21908630-21908649 | MS.gene51886:CDS | 25.0% |
| ! | CGTAGAGAATAGAAAATAAA+AGG | + | chr7.4:21908215-21908234 | None:intergenic | 25.0% |
| ! | GAAAAAATCGGTGAAAAATT+GGG | + | chr7.4:21908262-21908281 | None:intergenic | 25.0% |
| ! | TAGTACTTTAATATCAACAG+AGG | + | chr7.4:21908443-21908462 | None:intergenic | 25.0% |
| ! | TGAAAAAATCGGTGAAAAAT+TGG | + | chr7.4:21908263-21908282 | None:intergenic | 25.0% |
| ! | TGGCACAAAATTGAAAAAAT+CGG | + | chr7.4:21908274-21908293 | None:intergenic | 25.0% |
| !!! | AAAAAGGGGAATTTTTTAGT+AGG | + | chr7.4:21908393-21908412 | None:intergenic | 25.0% |
| !!! | AATTTTTTCCATATTGCTTC+TGG | - | chr7.4:21909231-21909250 | MS.gene51886:intron | 25.0% |
| !!! | AGTTTTTGTTTTAGCTTTGA+TGG | - | chr7.4:21908766-21908785 | MS.gene51886:intron | 25.0% |
| !!! | CACATTTTATTTTATCAGAG+GGG | - | chr7.4:21909759-21909778 | MS.gene51886:intron | 25.0% |
| !!! | TATTTTGGAAGTGCATAATT+TGG | - | chr7.4:21909537-21909556 | MS.gene51886:intron | 25.0% |
| AAAAATCGGTGAAAAATTGG+GGG | + | chr7.4:21908260-21908279 | None:intergenic | 30.0% | |
| AACTCGGTCAAAATAACAAA+AGG | + | chr7.4:21910242-21910261 | None:intergenic | 30.0% | |
| AGCTTAAACAAGAAGAATGA+TGG | + | chr7.4:21909069-21909088 | None:intergenic | 30.0% | |
| AGTCAGTTTACTGAAATTTC+AGG | - | chr7.4:21910116-21910135 | MS.gene51886:intron | 30.0% | |
| ATAGCATTTATAAGGCTCAA+GGG | - | chr7.4:21908811-21908830 | MS.gene51886:intron | 30.0% | |
| CATTACATGTTTCTTTAGAC+AGG | + | chr7.4:21909573-21909592 | None:intergenic | 30.0% | |
| CCAGATCATACTAATTGTAT+AGG | + | chr7.4:21909457-21909476 | None:intergenic | 30.0% | |
| CCTATACAATTAGTATGATC+TGG | - | chr7.4:21909454-21909473 | MS.gene51886:intron | 30.0% | |
| GAAAAATTGGGGGAAAAATT+AGG | + | chr7.4:21908250-21908269 | None:intergenic | 30.0% | |
| GTCAAAATAACAAAAGGAGA+GGG | + | chr7.4:21910236-21910255 | None:intergenic | 30.0% | |
| TATAGCATTTATAAGGCTCA+AGG | - | chr7.4:21908810-21908829 | MS.gene51886:intron | 30.0% | |
| TATCAACAGAGGGTAAAAAA+AGG | + | chr7.4:21908432-21908451 | None:intergenic | 30.0% | |
| TCATTGACAAAGTAGGAAAA+GGG | + | chr7.4:21909684-21909703 | None:intergenic | 30.0% | |
| TTCATTGACAAAGTAGGAAA+AGG | + | chr7.4:21909685-21909704 | None:intergenic | 30.0% | |
| ! | TTCTTTTCGCATTTTCTCAA+TGG | + | chr7.4:21908668-21908687 | None:intergenic | 30.0% |
| !! | CTGAAATTTCAGGTATCTTT+TGG | - | chr7.4:21910126-21910145 | MS.gene51886:intron | 30.0% |
| !!! | GGATTGTTGTTTTGGAATTT+AGG | - | chr7.4:21909629-21909648 | MS.gene51886:intron | 30.0% |
| AAGAAACAGCAAAAGCAAAC+AGG | - | chr7.4:21909608-21909627 | MS.gene51886:intron | 35.0% | |
| AAGCTATGATAAACCAGACA+AGG | - | chr7.4:21908539-21908558 | MS.gene51886:CDS | 35.0% | |
| AATCGAAGAGACTTGATTAC+AGG | - | chr7.4:21909870-21909889 | MS.gene51886:CDS | 35.0% | |
| ACACAGTATGTAGGTTCATT+TGG | + | chr7.4:21909992-21910011 | None:intergenic | 35.0% | |
| ATATGACACAATTGTCCACA+AGG | + | chr7.4:21910072-21910091 | None:intergenic | 35.0% | |
| ATCGAAGAGACTTGATTACA+GGG | - | chr7.4:21909871-21909890 | MS.gene51886:CDS | 35.0% | |
| ATGATTGCAGATCCTATCTT+GGG | - | chr7.4:21909199-21909218 | MS.gene51886:CDS | 35.0% | |
| ATGCATAACCAGAAGCAATA+TGG | + | chr7.4:21909242-21909261 | None:intergenic | 35.0% | |
| ATTGAGTTTATGCACTGAGA+AGG | - | chr7.4:21908711-21908730 | MS.gene51886:CDS | 35.0% | |
| CATTGACAAAGTAGGAAAAG+GGG | + | chr7.4:21909683-21909702 | None:intergenic | 35.0% | |
| GAAAATGCGAAAAGAAATCG+AGG | - | chr7.4:21908672-21908691 | MS.gene51886:CDS | 35.0% | |
| GCATGATATCCAAAGAGTAA+TGG | - | chr7.4:21908864-21908883 | MS.gene51886:intron | 35.0% | |
| GGATCATATAGTCCTTCTTA+TGG | + | chr7.4:21909943-21909962 | None:intergenic | 35.0% | |
| GGTCAAAATAACAAAAGGAG+AGG | + | chr7.4:21910237-21910256 | None:intergenic | 35.0% | |
| GTAGGTTCATTTGGATCAAT+GGG | + | chr7.4:21909983-21910002 | None:intergenic | 35.0% | |
| TAAGGCAATCCATTACTCTT+TGG | + | chr7.4:21908876-21908895 | None:intergenic | 35.0% | |
| TAATCAAGTCTCTTCGATTG+AGG | + | chr7.4:21909869-21909888 | None:intergenic | 35.0% | |
| TACATACTGTGTTTGTCATC+AGG | - | chr7.4:21910000-21910019 | MS.gene51886:intron | 35.0% | |
| TGATGACAAACACAGTATGT+AGG | + | chr7.4:21910001-21910020 | None:intergenic | 35.0% | |
| TGTAGGTTCATTTGGATCAA+TGG | + | chr7.4:21909984-21910003 | None:intergenic | 35.0% | |
| TTAGACCAACACATGAATAG+TGG | + | chr7.4:21910306-21910325 | None:intergenic | 35.0% | |
| ! | TATAGTTTCAAGTCTCCTTG+TGG | - | chr7.4:21910054-21910073 | MS.gene51886:intron | 35.0% |
| !! | AGAGTAATGGATTGCCTTAA+TGG | - | chr7.4:21908877-21908896 | MS.gene51886:intron | 35.0% |
| !! | ATGGGTTGATCAATATCCAT+AGG | + | chr7.4:21909965-21909984 | None:intergenic | 35.0% |
| !! | TCTGCTTTAAGTTGTTTGAG+AGG | - | chr7.4:21909163-21909182 | MS.gene51886:intron | 35.0% |
| !! | TGGGTTGATCAATATCCATA+GGG | + | chr7.4:21909964-21909983 | None:intergenic | 35.0% |
| !!! | AGCAAACAGGATTGTTGTTT+TGG | - | chr7.4:21909621-21909640 | MS.gene51886:intron | 35.0% |
| !!! | TTGTTTTAGCTTTGATGGCT+TGG | - | chr7.4:21908771-21908790 | MS.gene51886:intron | 35.0% |
| !!! | TTTTCAGGTTTAGGGACAAT+AGG | + | chr7.4:21909824-21909843 | None:intergenic | 35.0% |
| AAAAGAAATCGAGGCGAATC+AGG | - | chr7.4:21908681-21908700 | MS.gene51886:CDS | 40.0% | |
| AACACAAGAGACAAGGTTCA+AGG | - | chr7.4:21910324-21910343 | MS.gene51886:intron | 40.0% | |
| ACACAAGAGACAAGGTTCAA+GGG | - | chr7.4:21910325-21910344 | MS.gene51886:intron | 40.0% | |
| AGTAGGAAAAGGGGAATTTC+AGG | + | chr7.4:21909674-21909693 | None:intergenic | 40.0% | |
| AGTCTACGTCGATGACTATT+TGG | - | chr7.4:21908179-21908198 | MS.gene51886:CDS | 40.0% | |
| ATTCACATGACTCCCAAGAT+AGG | + | chr7.4:21909214-21909233 | None:intergenic | 40.0% | |
| CCATGTAAAACGACTTGATG+AGG | - | chr7.4:21909327-21909346 | MS.gene51886:intron | 40.0% | |
| CTTTAGATCTTCAGCGAAGT+AGG | + | chr7.4:21909359-21909378 | None:intergenic | 40.0% | |
| GAAGGACTATATGATCCCTA+TGG | - | chr7.4:21909946-21909965 | MS.gene51886:CDS | 40.0% | |
| GATGATTGCAGATCCTATCT+TGG | - | chr7.4:21909198-21909217 | MS.gene51886:CDS | 40.0% | |
| GTAGGAAAAGGGGAATTTCA+GGG | + | chr7.4:21909673-21909692 | None:intergenic | 40.0% | |
| GTGGTAGTAATCTGCAAGTT+GGG | + | chr7.4:21910363-21910382 | None:intergenic | 40.0% | |
| GTTTAGGGACAATAGGAAGT+GGG | + | chr7.4:21909817-21909836 | None:intergenic | 40.0% | |
| TAGGAAAAGGGGAATTTCAG+GGG | + | chr7.4:21909672-21909691 | None:intergenic | 40.0% | |
| TCACTGTACAATTCATCTCG+AGG | - | chr7.4:21909039-21909058 | MS.gene51886:intron | 40.0% | |
| TGGGGGAAAAATTAGGGTTA+GGG | + | chr7.4:21908243-21908262 | None:intergenic | 40.0% | |
| TGGTTCCACTATTCATGTGT+TGG | - | chr7.4:21910298-21910317 | MS.gene51886:intron | 40.0% | |
| TGTGGTAGTAATCTGCAAGT+TGG | + | chr7.4:21910364-21910383 | None:intergenic | 40.0% | |
| TTGGGGGAAAAATTAGGGTT+AGG | + | chr7.4:21908244-21908263 | None:intergenic | 40.0% | |
| TTGGTCTAACACAAGAGACA+AGG | - | chr7.4:21910317-21910336 | MS.gene51886:intron | 40.0% | |
| TTTAGGGACAATAGGAAGTG+GGG | + | chr7.4:21909816-21909835 | None:intergenic | 40.0% | |
| ! | TTCGCTGAAGATCTAAAGCA+AGG | - | chr7.4:21909361-21909380 | MS.gene51886:intron | 40.0% |
| !! | AGCAGACAAAGTACTGTATG+GGG | - | chr7.4:21908563-21908582 | MS.gene51886:CDS | 40.0% |
| !! | ATGCACTGAGAAGGTTTTGT+TGG | - | chr7.4:21908720-21908739 | MS.gene51886:CDS | 40.0% |
| !! | CAGCAGACAAAGTACTGTAT+GGG | - | chr7.4:21908562-21908581 | MS.gene51886:CDS | 40.0% |
| !! | CCTCATCAAGTCGTTTTACA+TGG | + | chr7.4:21909330-21909349 | None:intergenic | 40.0% |
| !! | TCATCTCATGGCTCTAAGAA+GGG | - | chr7.4:21908589-21908608 | MS.gene51886:CDS | 40.0% |
| !! | TGTTATTCTTGATAGTGCCG+AGG | - | chr7.4:21910268-21910287 | MS.gene51886:intron | 40.0% |
| AGACAAGGTTCAAGGGAAAG+TGG | - | chr7.4:21910332-21910351 | MS.gene51886:intron | 45.0% | |
| GGTTTAGGGACAATAGGAAG+TGG | + | chr7.4:21909818-21909837 | None:intergenic | 45.0% | |
| TAGTCCTTCTTATGGCTTCC+TGG | + | chr7.4:21909935-21909954 | None:intergenic | 45.0% | |
| TGAACTTTGCTCTCTTGTGC+TGG | - | chr7.4:21910187-21910206 | MS.gene51886:CDS | 45.0% | |
| TGATTACAGGGAGAGAGACT+GGG | - | chr7.4:21909883-21909902 | MS.gene51886:CDS | 45.0% | |
| TGTATGGGGTTCTCATCTCA+TGG | - | chr7.4:21908577-21908596 | MS.gene51886:CDS | 45.0% | |
| TTAGGGACAATAGGAAGTGG+GGG | + | chr7.4:21909815-21909834 | None:intergenic | 45.0% | |
| TTGATTACAGGGAGAGAGAC+TGG | - | chr7.4:21909882-21909901 | MS.gene51886:CDS | 45.0% | |
| ! | CTTTGATGGCTTGGACAAGA+GGG | - | chr7.4:21908780-21908799 | MS.gene51886:intron | 45.0% |
| !! | CTCATCTCATGGCTCTAAGA+AGG | - | chr7.4:21908588-21908607 | MS.gene51886:CDS | 45.0% |
| !! | GCAGCAGACAAAGTACTGTA+TGG | - | chr7.4:21908561-21908580 | MS.gene51886:CDS | 45.0% |
| !! | TATTCTTGATAGTGCCGAGG+AGG | - | chr7.4:21910271-21910290 | MS.gene51886:intron | 45.0% |
| AAGCTCAGCGGGCAATGTAT+TGG | + | chr7.4:21908317-21908336 | None:intergenic | 50.0% | |
| ACTTTGTCTGCTGCCTTGTC+TGG | + | chr7.4:21908555-21908574 | None:intergenic | 50.0% | |
| AGTGGAACCATTCACCTCCT+CGG | + | chr7.4:21910288-21910307 | None:intergenic | 50.0% | |
| GGCACGACAAGCATATGAAC+TGG | - | chr7.4:21908741-21908760 | MS.gene51886:CDS | 50.0% | |
| GGGATCGTTCATCGAGTTCA+CGG | + | chr7.4:21908360-21908379 | None:intergenic | 50.0% | |
| TCCACCAGGAAGCCATAAGA+AGG | - | chr7.4:21909928-21909947 | MS.gene51886:CDS | 50.0% | |
| TCCTTCTTATGGCTTCCTGG+TGG | + | chr7.4:21909932-21909951 | None:intergenic | 50.0% | |
| TCGTTCATCGAGTTCACGGA+CGG | + | chr7.4:21908356-21908375 | None:intergenic | 50.0% | |
| TTCTTATGGCTTCCTGGTGG+AGG | + | chr7.4:21909929-21909948 | None:intergenic | 50.0% | |
| TTTGAGCTAATGCCTCCACC+AGG | - | chr7.4:21909914-21909933 | MS.gene51886:CDS | 50.0% | |
| ! | GCTTTGATGGCTTGGACAAG+AGG | - | chr7.4:21908779-21908798 | MS.gene51886:intron | 50.0% |
| ! | TCCCTAAACCTGAAAAGCGC+AGG | - | chr7.4:21909828-21909847 | MS.gene51886:CDS | 50.0% |
| !! | AGAAGTCTCTGAAGCTCAGC+GGG | + | chr7.4:21908328-21908347 | None:intergenic | 50.0% |
| !! | GAGAAGTCTCTGAAGCTCAG+CGG | + | chr7.4:21908329-21908348 | None:intergenic | 50.0% |
| !!! | GCCTGCGCTTTTCAGGTTTA+GGG | + | chr7.4:21909832-21909851 | None:intergenic | 50.0% |
| !!! | TGCCTGCGCTTTTCAGGTTT+AGG | + | chr7.4:21909833-21909852 | None:intergenic | 50.0% |
| GGAAGTGGGGGAAGAATTGC+TGG | + | chr7.4:21909803-21909822 | None:intergenic | 55.0% | |
| ! | GAAAAGCGCAGGCACGCATA+TGG | - | chr7.4:21909839-21909858 | MS.gene51886:CDS | 55.0% |
| ! | GATAGTGCCGAGGAGGTGAA+TGG | - | chr7.4:21910278-21910297 | MS.gene51886:intron | 55.0% |
| ! | TATGCGTGCCTGCGCTTTTC+AGG | + | chr7.4:21909839-21909858 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21908159 | 21910393 | 21908159 | ID=MS.gene51886 |
| chr7.4 | mRNA | 21908159 | 21910393 | 21908159 | ID=MS.gene51886.t1;Parent=MS.gene51886 |
| chr7.4 | exon | 21910348 | 21910393 | 21910348 | ID=MS.gene51886.t1.exon1;Parent=MS.gene51886.t1 |
| chr7.4 | CDS | 21910348 | 21910393 | 21910348 | ID=cds.MS.gene51886.t1;Parent=MS.gene51886.t1 |
| chr7.4 | exon | 21910170 | 21910241 | 21910170 | ID=MS.gene51886.t1.exon2;Parent=MS.gene51886.t1 |
| chr7.4 | CDS | 21910170 | 21910241 | 21910170 | ID=cds.MS.gene51886.t1;Parent=MS.gene51886.t1 |
| chr7.4 | exon | 21909790 | 21910010 | 21909790 | ID=MS.gene51886.t1.exon3;Parent=MS.gene51886.t1 |
| chr7.4 | CDS | 21909790 | 21910010 | 21909790 | ID=cds.MS.gene51886.t1;Parent=MS.gene51886.t1 |
| chr7.4 | exon | 21909170 | 21909233 | 21909170 | ID=MS.gene51886.t1.exon4;Parent=MS.gene51886.t1 |
| chr7.4 | CDS | 21909170 | 21909233 | 21909170 | ID=cds.MS.gene51886.t1;Parent=MS.gene51886.t1 |
| chr7.4 | exon | 21908531 | 21908775 | 21908531 | ID=MS.gene51886.t1.exon5;Parent=MS.gene51886.t1 |
| chr7.4 | CDS | 21908531 | 21908775 | 21908531 | ID=cds.MS.gene51886.t1;Parent=MS.gene51886.t1 |
| chr7.4 | exon | 21908376 | 21908414 | 21908376 | ID=MS.gene51886.t1.exon6;Parent=MS.gene51886.t1 |
| chr7.4 | CDS | 21908376 | 21908414 | 21908376 | ID=cds.MS.gene51886.t1;Parent=MS.gene51886.t1 |
| chr7.4 | exon | 21908159 | 21908269 | 21908159 | ID=MS.gene51886.t1.exon7;Parent=MS.gene51886.t1 |
| chr7.4 | CDS | 21908159 | 21908269 | 21908159 | ID=cds.MS.gene51886.t1;Parent=MS.gene51886.t1 |
| Gene Sequence |
| Protein sequence |
