AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51980.t1 MTR_0856s0010 44.654 159 85 2 16 173 4 160 1.60e-34 129
MS.gene51980.t1 MTR_6g051425 30.943 265 166 5 62 313 31 291 4.11e-34 134
MS.gene51980.t1 MTR_4g035820 29.492 295 184 12 9 288 39 324 9.35e-22 100
MS.gene51980.t1 MTR_0558s0020 26.295 251 161 5 51 277 39 289 1.04e-20 94.0
MS.gene51980.t1 MTR_1g070355 29.167 240 155 7 49 278 75 309 4.04e-20 95.5
MS.gene51980.t1 MTR_7g446060 50.000 82 41 0 130 211 7 88 1.11e-18 83.6
MS.gene51980.t1 MTR_7g446520 28.151 238 154 5 52 286 92 315 3.30e-18 87.0
MS.gene51980.t1 MTR_6g022070 29.655 145 98 2 338 482 1 141 5.40e-17 83.6
MS.gene51980.t1 MTR_7g446480 31.395 172 117 1 122 292 143 314 3.37e-16 80.9
MS.gene51980.t1 MTR_8g446020 25.217 230 151 4 51 277 38 249 4.31e-16 79.3
MS.gene51980.t1 MTR_3g450850 26.573 286 185 10 54 320 53 332 7.70e-16 80.1
MS.gene51980.t1 MTR_7g446510 30.814 172 118 1 122 292 158 329 9.49e-16 79.7
MS.gene51980.t1 MTR_1g008290 31.579 133 89 1 108 240 14 144 7.36e-15 72.8
MS.gene51980.t1 MTR_7g115320 59.259 54 19 1 137 190 9 59 1.29e-13 67.4
MS.gene51980.t1 MTR_3g012160 41.975 81 46 1 193 273 14 93 1.40e-13 67.4
MS.gene51980.t1 MTR_1g019850 31.579 133 80 4 48 175 70 196 1.69e-13 71.2
MS.gene51980.t1 MTR_1g083640 24.454 229 149 5 51 255 54 282 2.93e-13 71.6
MS.gene51980.t1 MTR_5g023310 27.451 153 42 3 183 334 20 104 7.53e-12 63.2
MS.gene51980.t1 MTR_6g090505 26.163 172 124 2 109 277 53 224 3.16e-11 66.2
MS.gene51980.t1 MTR_0402s0040 25.000 180 130 3 47 221 25 204 9.40e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51980.t1 AT4G15090 31.967 732 461 14 48 771 51 753 1.06e-119 380
MS.gene51980.t1 AT4G15090 31.967 732 461 14 48 771 51 753 1.06e-119 380
MS.gene51980.t1 AT4G15090 31.967 732 461 14 48 771 51 753 1.06e-119 380
MS.gene51980.t1 AT4G15090 31.967 732 461 14 48 771 51 753 1.06e-119 380
MS.gene51980.t1 AT4G15090 31.967 732 461 14 48 771 51 753 1.06e-119 380
MS.gene51980.t1 AT4G38180 35.511 597 364 10 48 631 73 661 1.10e-115 369
MS.gene51980.t1 AT3G22170 31.797 651 385 11 18 643 35 651 5.36e-108 350
MS.gene51980.t1 AT3G22170 31.797 651 385 11 18 643 35 651 5.36e-108 350
MS.gene51980.t1 AT1G76320 32.198 587 374 9 52 633 1 568 8.03e-104 334
MS.gene51980.t1 AT1G76320 32.198 587 374 9 52 633 1 568 2.58e-103 334
MS.gene51980.t1 AT1G76320 32.198 587 374 9 52 633 1 568 2.58e-103 334
MS.gene51980.t1 AT1G76320 32.198 587 374 9 52 633 1 568 3.16e-103 334
MS.gene51980.t1 AT1G52520 32.027 587 374 12 33 607 66 639 5.65e-101 327
MS.gene51980.t1 AT2G27110 31.639 610 364 14 48 645 49 617 9.32e-92 306
MS.gene51980.t1 AT2G27110 31.639 610 364 14 48 645 49 617 9.32e-92 306
MS.gene51980.t1 AT3G06250 33.511 564 321 15 48 606 190 704 1.74e-89 298
MS.gene51980.t1 AT3G06250 33.511 564 321 15 48 606 190 704 1.74e-89 298
MS.gene51980.t1 AT3G06250 33.511 564 321 15 48 606 190 704 1.74e-89 298
MS.gene51980.t1 AT1G80010 31.656 616 383 13 14 610 69 665 5.27e-89 296
MS.gene51980.t1 AT2G27110 35.963 431 265 6 217 645 51 472 3.63e-87 291
MS.gene51980.t1 AT5G18960 31.386 599 347 15 36 622 199 745 7.67e-83 281
MS.gene51980.t1 AT5G18960 31.386 599 347 15 36 622 199 745 7.67e-83 281
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 176 605 4.29e-79 270
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 135 564 4.53e-79 270
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 135 564 4.83e-79 270
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 176 605 7.18e-79 270
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 176 605 7.18e-79 270
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 176 605 8.06e-79 270
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 176 605 8.06e-79 270
MS.gene51980.t1 AT2G32250 33.634 443 273 6 224 658 176 605 8.06e-79 270
MS.gene51980.t1 AT4G19990 29.519 603 355 12 54 632 27 583 4.12e-75 259
MS.gene51980.t1 AT4G19990 29.519 603 355 12 54 632 27 583 4.55e-75 259
MS.gene51980.t1 AT4G19990 29.519 603 355 12 54 632 27 583 4.55e-75 259
MS.gene51980.t1 AT4G19990 29.519 603 355 12 54 632 41 597 6.93e-75 259
MS.gene51980.t1 AT4G19990 29.519 603 355 12 54 632 27 583 1.03e-74 258
MS.gene51980.t1 AT4G19990 29.519 603 355 12 54 632 27 583 1.03e-74 258
MS.gene51980.t1 AT4G38170 33.505 388 247 4 221 606 21 399 6.15e-74 251
MS.gene51980.t1 AT4G19990 30.241 539 322 10 104 632 32 526 9.65e-72 248
MS.gene51980.t1 AT1G10240 26.274 628 414 18 1 603 1 604 5.64e-62 221
MS.gene51980.t1 AT1G10240 26.274 628 414 18 1 603 1 604 5.64e-62 221
MS.gene51980.t1 AT5G28530 28.257 591 366 15 46 603 53 618 2.57e-61 219
MS.gene51980.t1 AT5G28530 27.750 591 365 14 46 603 53 614 1.35e-60 217
MS.gene51980.t1 AT5G28530 27.750 591 365 14 46 603 53 614 1.35e-60 217
MS.gene51980.t1 AT5G28530 27.134 328 201 7 290 603 252 555 4.17e-28 120
MS.gene51980.t1 AT5G28530 26.220 328 200 6 290 603 252 551 2.42e-27 118

Find 155 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTTAAAACATGATTTC+TGG 0.164544 3.4:+6270336 MS.gene51980:CDS
CGTGTTGACGTTTGGGATTC+CGG 0.195804 3.4:+6269141 MS.gene51980:CDS
TCTTTCCCGCTCTTCGAAAA+TGG 0.249066 3.4:-6270303 None:intergenic
GATCGCAAACCCTTGTTTCA+TGG 0.299904 3.4:-6269268 None:intergenic
CCTCTTTGTTGTTGACATTC+CGG 0.306720 3.4:-6270360 None:intergenic
AAGACCGCAACCTAGTAAAA+TGG 0.321194 3.4:-6269949 None:intergenic
GTGTTGACGTTTGGGATTCC+GGG 0.332951 3.4:+6269142 MS.gene51980:CDS
TGCTGCTCGTGTTGACGTTT+GGG 0.334479 3.4:+6269134 MS.gene51980:CDS
CGTCATCTAGCTCTCCATTA+GGG 0.344995 3.4:-6269110 None:intergenic
GGCTATGCAAAATGCAATTC+AGG 0.355784 3.4:+6270073 MS.gene51980:CDS
TTGCTTTAAAGAAGGGTCTA+TGG 0.361166 3.4:+6269439 MS.gene51980:CDS
GTACACCCATGAAAAGTATA+TGG 0.361947 3.4:+6270571 MS.gene51980:CDS
GTGCTGCTCGTGTTGACGTT+TGG 0.373475 3.4:+6269133 MS.gene51980:CDS
ACTAAATCACGGTTGTTTGC+TGG 0.375082 3.4:+6269507 MS.gene51980:CDS
CATCCTTTATTAGCCCCTAA+TGG 0.375098 3.4:+6269096 MS.gene51980:CDS
CCGTCATCTAGCTCTCCATT+AGG 0.377369 3.4:-6269111 None:intergenic
ATGTCGTTACTTGCATCAAT+GGG 0.378291 3.4:+6271475 MS.gene51980:CDS
AGTATTGTGTTGATTTCAAC+GGG 0.389824 3.4:+6270717 MS.gene51980:CDS
TATGTCGTTACTTGCATCAA+TGG 0.393059 3.4:+6271474 MS.gene51980:CDS
CACCACCTATGCCTAGTATT+AGG 0.393202 3.4:-6270104 None:intergenic
ACACAATACTTAGTTTCGTT+TGG 0.403411 3.4:-6270704 None:intergenic
GGATTAAGAATTGGTTGATC+AGG 0.405554 3.4:-6271139 None:intergenic
CTAGGCATAGGTGGTGTCTA+TGG 0.405638 3.4:+6270111 MS.gene51980:CDS
ATGTCATTTGCCCCGTTTGT+TGG 0.407466 3.4:+6269906 MS.gene51980:CDS
TTATTTAAAACATGATTTCT+GGG 0.414268 3.4:+6270337 MS.gene51980:CDS
AAAGGATGATCGATCAATAT+AGG 0.415391 3.4:-6269081 None:intergenic
ACTTCCACGACCGAAACATT+TGG 0.427839 3.4:-6271259 None:intergenic
ACATTACTTCCTATGTCTGA+TGG 0.429150 3.4:+6271391 MS.gene51980:CDS
GATGATTGACACCAACAAAC+GGG 0.432575 3.4:-6269917 None:intergenic
TTGGTGGTATGTTTGATTCA+TGG 0.433399 3.4:-6269365 None:intergenic
GCAAACAACCGTGATTTAGT+TGG 0.439208 3.4:-6269504 None:intergenic
GTCATATTTGTTTGTCAAGT+AGG 0.443684 3.4:-6269883 None:intergenic
ATGGTTTGGGTGAAAATGAT+TGG 0.445440 3.4:+6270273 MS.gene51980:CDS
CATTACTTCCTATGTCTGAT+GGG 0.447968 3.4:+6271392 MS.gene51980:CDS
TCTCCATTAGGGGCTAATAA+AGG 0.448593 3.4:-6269099 None:intergenic
TGATGATTGACACCAACAAA+CGG 0.449717 3.4:-6269918 None:intergenic
GAGCAATCATGTTTCTTCGT+TGG 0.456664 3.4:-6269402 None:intergenic
GGCTAAGGTGTATGTCTTCG+AGG 0.457503 3.4:+6270018 MS.gene51980:CDS
TATCCTACTTTGCTAGAATG+AGG 0.459924 3.4:+6269730 MS.gene51980:CDS
AAAACTAGAAACTCTAAGAA+AGG 0.460549 3.4:+6269291 MS.gene51980:CDS
ACTCCAAGACAAGGCTGAAA+AGG 0.462412 3.4:+6270466 MS.gene51980:CDS
CAAATGGTCTAGCAAGAAGT+TGG 0.463702 3.4:+6271036 MS.gene51980:CDS
AGGTTGTGTTTCCTAATACT+AGG 0.465284 3.4:+6270093 MS.gene51980:CDS
TTAAAACATGATTTCTGGGC+CGG 0.468973 3.4:+6270341 MS.gene51980:CDS
GCAAAAGAAAGACACCTTCT+CGG 0.472868 3.4:+6269681 MS.gene51980:CDS
GATAACGGTTGCTTTAAAGA+AGG 0.473052 3.4:+6269431 MS.gene51980:CDS
AACATCACCAAAGTATTCAT+AGG 0.473828 3.4:-6269844 None:intergenic
TTTGTTGGTGTCAATCATCA+TGG 0.475674 3.4:+6269921 MS.gene51980:CDS
CCACACATAGAAAGATTTGA+AGG 0.478166 3.4:+6270932 MS.gene51980:CDS
GGCATCACATACCATGGAAC+GGG 0.480723 3.4:-6269607 None:intergenic
GCCACATTGTGGTGTGGGAG+GGG 0.481690 3.4:+6271075 MS.gene51980:CDS
TTAAAAGACATACTGATAGT+AGG 0.482399 3.4:-6269207 None:intergenic
TCGGGAAGGAAGGAGATGGC+AGG 0.482875 3.4:+6269700 MS.gene51980:CDS
GACAGCATTTGTTGTTTCAA+AGG 0.485404 3.4:-6269166 None:intergenic
ATTTGTTGTTTCAAAGGTCC+CGG 0.485747 3.4:-6269160 None:intergenic
TTGAAATTGTCTCTCGATTG+TGG 0.489013 3.4:-6270543 None:intergenic
CTTGTTTCATGGCATATTCA+CGG 0.492232 3.4:-6269257 None:intergenic
AAAACCACTAGTTGACTGTT+GGG 0.492621 3.4:-6271452 None:intergenic
GACAATACTCTCCTCTAAAA+CGG 0.498094 3.4:-6270672 None:intergenic
CGTGAATATGCCATGAAACA+AGG 0.498225 3.4:+6269258 MS.gene51980:CDS
TGTATGAAGAAATGATCAAA+TGG 0.501577 3.4:+6271020 MS.gene51980:CDS
TTTCGAAGAGCGGGAAAGAT+GGG 0.502201 3.4:+6270307 MS.gene51980:CDS
GTTGGATTCGTCTTCAAAGT+TGG 0.502236 3.4:-6269384 None:intergenic
CATCTCCTTCCTTCCCGAGA+AGG 0.502837 3.4:-6269695 None:intergenic
TTACCTGGTTGTTCGAAACA+TGG 0.503284 3.4:+6269997 MS.gene51980:CDS
TGGTCATCTTAGAGTGAAAG+AGG 0.503540 3.4:+6270817 MS.gene51980:CDS
TATGTCTTCGAGGCCTCCAA+TGG 0.508338 3.4:+6270028 MS.gene51980:CDS
AAAACCAAATGTTTCGGTCG+TGG 0.509616 3.4:+6271255 MS.gene51980:CDS
TCGGTTACAATTCCCATTGG+AGG 0.511504 3.4:-6270041 None:intergenic
TTACGAAAATCTAACATTTG+TGG 0.512305 3.4:+6269635 MS.gene51980:CDS
AAACGATCAGGCAGGTGTAC+GGG 0.512319 3.4:+6269572 MS.gene51980:CDS
GAGAGATGTCAGAAACTTTG+TGG 0.514693 3.4:+6269659 MS.gene51980:CDS
CAAAAGAAAGACACCTTCTC+GGG 0.517286 3.4:+6269682 MS.gene51980:CDS
CCTTCAAATCTTTCTATGTG+TGG 0.521556 3.4:-6270932 None:intergenic
ATAACGGTTGCTTTAAAGAA+GGG 0.522275 3.4:+6269432 MS.gene51980:CDS
AAACTAGAAACTCTAAGAAA+GGG 0.523644 3.4:+6269292 MS.gene51980:CDS
TTCCCTCATTCTAGCAAAGT+AGG 0.524536 3.4:-6269733 None:intergenic
AACTCTAAGAAAGGGTCTGA+TGG 0.527361 3.4:+6269300 MS.gene51980:CDS
AAATGGTCTAGCAAGAAGTT+GGG 0.529100 3.4:+6271037 MS.gene51980:CDS
CGTTCCATGGTATGTGATGC+CGG 0.529133 3.4:+6269609 MS.gene51980:CDS
GGATTCGTCTTCAAAGTTGG+TGG 0.530111 3.4:-6269381 None:intergenic
AAGTCTGCCTATGAATACTT+TGG 0.530323 3.4:+6269837 MS.gene51980:CDS
TAAACGATCAGGCAGGTGTA+CGG 0.533293 3.4:+6269571 MS.gene51980:CDS
AAGTATTGTGTTGATTTCAA+CGG 0.536214 3.4:+6270716 MS.gene51980:CDS
TAAAACCACTAGTTGACTGT+TGG 0.536849 3.4:-6271453 None:intergenic
ATCCTACTTTGCTAGAATGA+GGG 0.537508 3.4:+6269731 MS.gene51980:CDS
TCCGTTAAAAGTACCACGTA+CGG 0.537769 3.4:+6271159 MS.gene51980:CDS
TGATCGGTTACAATTCCCAT+TGG 0.541217 3.4:-6270044 None:intergenic
GAACAAAAGTTCCCGTTCCA+TGG 0.543200 3.4:+6269596 MS.gene51980:CDS
CTATGAGATTGACATGGACG+AGG 0.547341 3.4:+6269773 MS.gene51980:CDS
TTGCATAGCCTTGCACTGAT+CGG 0.547738 3.4:-6270060 None:intergenic
ATTCTAACTTGTGCAAGAGA+AGG 0.552020 3.4:+6269339 MS.gene51980:CDS
AGACACCTTCTCGGGAAGGA+AGG 0.553011 3.4:+6269690 MS.gene51980:CDS
CAGCCACATTGTGGTGTGGG+AGG 0.557227 3.4:+6271073 MS.gene51980:CDS
TTACAGCCACATTGTGGTGT+GGG 0.557892 3.4:+6271070 MS.gene51980:CDS
TGTTTCGAACAACCAGGTAA+AGG 0.558836 3.4:-6269994 None:intergenic
AGCCACATTGTGGTGTGGGA+GGG 0.562336 3.4:+6271074 MS.gene51980:CDS
CTAAATTTATCTTGCCACGA+TGG 0.563368 3.4:+6270846 MS.gene51980:CDS
GAGATACAAGTAGAATTTCG+TGG 0.566723 3.4:+6270593 MS.gene51980:CDS
ATGTCTTCGAGGCCTCCAAT+GGG 0.571048 3.4:+6270029 MS.gene51980:CDS
TTTACAGCCACATTGTGGTG+TGG 0.571102 3.4:+6271069 MS.gene51980:CDS
TGTTTCCTAATACTAGGCAT+AGG 0.571109 3.4:+6270099 MS.gene51980:CDS
TTGTTGGTGTCAATCATCAT+GGG 0.576932 3.4:+6269922 MS.gene51980:CDS
TCTCGAAGGTGTGACTACAT+TGG 0.577648 3.4:+6270631 MS.gene51980:CDS
TGTTTGATGTTTGAGTTCAG+AGG 0.578292 3.4:+6270764 MS.gene51980:CDS
TCTGATGGGTTTCAAGCGTA+CGG 0.579844 3.4:+6271406 MS.gene51980:CDS
AAGATACTAGGTCCTTTACC+TGG 0.580541 3.4:+6269982 MS.gene51980:CDS
TGCATCAATGGGGAAAGATG+TGG 0.589332 3.4:+6271486 MS.gene51980:CDS
CGGCATCACATACCATGGAA+CGG 0.590216 3.4:-6269608 None:intergenic
ATATTTGTTTGTCAAGTAGG+TGG 0.595151 3.4:-6269880 None:intergenic
GCTTGAAACCCATCAGACAT+AGG 0.598911 3.4:-6271400 None:intergenic
GTGAATATGCCATGAAACAA+GGG 0.602322 3.4:+6269259 MS.gene51980:CDS
TGATTGCTCAGCTAAGATAA+CGG 0.602603 3.4:+6269416 MS.gene51980:CDS
CGACAACGCACTCCAAGACA+AGG 0.606607 3.4:+6270457 MS.gene51980:CDS
AGATACAAGTAGAATTTCGT+GGG 0.607840 3.4:+6270594 MS.gene51980:CDS
AGAAAGACACCTTCTCGGGA+AGG 0.609091 3.4:+6269686 MS.gene51980:CDS
ACCACCGGCATCACATACCA+TGG 0.613048 3.4:-6269613 None:intergenic
GTTCGAAGACGTCCCGTACG+TGG 0.613542 3.4:-6271172 None:intergenic
AAATGCAACTGTTATCTCGA+AGG 0.615193 3.4:+6270617 MS.gene51980:CDS
TTCCTAATACTAGGCATAGG+TGG 0.615209 3.4:+6270102 MS.gene51980:CDS
CAAGCACAATCATTCCATGC+GGG 0.616971 3.4:+6270513 MS.gene51980:CDS
GGTTGTTCGAAACATGGCTA+AGG 0.617470 3.4:+6270003 MS.gene51980:CDS
CGTGGCAAGATAAATTTAGA+CGG 0.619992 3.4:-6270842 None:intergenic
CCGTTAAAAGTACCACGTAC+GGG 0.620041 3.4:+6271160 MS.gene51980:CDS
AATTGTAACCGATCAGTGCA+AGG 0.620761 3.4:+6270052 MS.gene51980:CDS
CGGGAAGGAAGGAGATGGCA+GGG 0.622349 3.4:+6269701 MS.gene51980:CDS
TCATCCCAACAGTCAACTAG+TGG 0.623204 3.4:+6271448 MS.gene51980:CDS
ATGTGTGTATGATTCTCTGC+GGG 0.623656 3.4:+6270208 MS.gene51980:CDS
AAAGGATGCGCACAATACAA+AGG 0.625240 3.4:+6270164 MS.gene51980:CDS
ATTAGTTTACAGCCACATTG+TGG 0.625843 3.4:+6271064 MS.gene51980:CDS
GTCATCTAGCTCTCCATTAG+GGG 0.626799 3.4:-6269109 None:intergenic
TAGCCATGTTTCGAACAACC+AGG 0.627145 3.4:-6270000 None:intergenic
ATTGTGGAATTTGACCCGCA+TGG 0.627292 3.4:-6270527 None:intergenic
CTTCTCGGGAAGGAAGGAGA+TGG 0.631777 3.4:+6269696 MS.gene51980:CDS
CATTTCTTCATACAAATCAG+AGG 0.636013 3.4:-6271011 None:intergenic
CAAGGCTGAAAAGGAATACG+AGG 0.638254 3.4:+6270475 MS.gene51980:CDS
GGATGATCGATCAATATAGG+AGG 0.639611 3.4:-6269078 None:intergenic
AGATAAGTCCAACTAAATCA+CGG 0.645312 3.4:+6269496 MS.gene51980:CDS
TACAAATCAGAGGTCTGACT+AGG 0.645507 3.4:-6271001 None:intergenic
CCTAATGGAGAGCTAGATGA+CGG 0.647509 3.4:+6269111 MS.gene51980:CDS
TTATGAAATTGCAGAATGTG+CGG 0.662542 3.4:+6270970 MS.gene51980:CDS
ATGATTGACACCAACAAACG+GGG 0.665562 3.4:-6269916 None:intergenic
CCGGAATGTCAACAACAAAG+AGG 0.666474 3.4:+6270360 MS.gene51980:CDS
TTAGAGGAGAGTATTGTCTG+TGG 0.669312 3.4:+6270677 MS.gene51980:CDS
GACGTCTTCGAACTAATCGT+CGG 0.672323 3.4:+6271182 MS.gene51980:CDS
GGATGATAGCTTAAACACGA+TGG 0.674970 3.4:+6271096 MS.gene51980:CDS
TGTCGTTACTTGCATCAATG+GGG 0.677462 3.4:+6271476 MS.gene51980:CDS
AGTAGGCGTGAATTTATCTG+TGG 0.682289 3.4:-6269190 None:intergenic
TGATAGCTTAAACACGATGG+AGG 0.690849 3.4:+6271099 MS.gene51980:CDS
TCAAGCACAATCATTCCATG+CGG 0.697666 3.4:+6270512 MS.gene51980:CDS
TCCCCTCCCACACCACAATG+TGG 0.698773 3.4:-6271076 None:intergenic
AATGTGTGTATGATTCTCTG+CGG 0.739377 3.4:+6270207 MS.gene51980:CDS
TCCATGGTATGTGATGCCGG+TGG 0.764195 3.4:+6269612 MS.gene51980:CDS
AGATTGATATGCATGCACAG+CGG 0.798983 3.4:+6269538 MS.gene51980:CDS
GTATTGTGTTGATTTCAACG+GGG 0.841514 3.4:+6270718 MS.gene51980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCATGTTTTAAATAACA+TGG - chr3.4:6270335-6270354 None:intergenic 15.0%
!!! TTATTTAAAACATGATTTCT+GGG + chr3.4:6270337-6270356 MS.gene51980:CDS 15.0%
!! AAGAAAAAAACCAAATGTTT+CGG + chr3.4:6271249-6271268 MS.gene51980:CDS 20.0%
!! ACAACATTCATTGAAAAATA+TGG + chr3.4:6270254-6270273 MS.gene51980:CDS 20.0%
!! ATTCATTGAAAAATATGGTT+TGG + chr3.4:6270259-6270278 MS.gene51980:CDS 20.0%
!! TTCATTGAAAAATATGGTTT+GGG + chr3.4:6270260-6270279 MS.gene51980:CDS 20.0%
!!! GTTATTTAAAACATGATTTC+TGG + chr3.4:6270336-6270355 MS.gene51980:CDS 20.0%
!!! TATCAGTATGTCTTTTAAAT+CGG + chr3.4:6269212-6269231 MS.gene51980:CDS 20.0%
! AAAATTGCCGAAAAATTGAA+AGG + chr3.4:6270146-6270165 MS.gene51980:CDS 25.0%
! TGTATGAAGAAATGATCAAA+TGG + chr3.4:6271020-6271039 MS.gene51980:CDS 25.0%
! TTAAAAGACATACTGATAGT+AGG - chr3.4:6269210-6269229 None:intergenic 25.0%
! TTACGAAAATCTAACATTTG+TGG + chr3.4:6269635-6269654 MS.gene51980:CDS 25.0%
!! AAAACTAGAAACTCTAAGAA+AGG + chr3.4:6269291-6269310 MS.gene51980:CDS 25.0%
!! AAACTAGAAACTCTAAGAAA+GGG + chr3.4:6269292-6269311 MS.gene51980:CDS 25.0%
!! TATCTCCATATACTTTTCAT+GGG - chr3.4:6270579-6270598 None:intergenic 25.0%
!!! AAGTATTGTGTTGATTTCAA+CGG + chr3.4:6270716-6270735 MS.gene51980:CDS 25.0%
!!! ACTTTTAACGGATTAAGAAT+TGG - chr3.4:6271151-6271170 None:intergenic 25.0%
!!! TTTTTTCACAATCTTTTCAG+TGG - chr3.4:6271215-6271234 None:intergenic 25.0%
AAAGGATGATCGATCAATAT+AGG - chr3.4:6269084-6269103 None:intergenic 30.0%
ACACAATACTTAGTTTCGTT+TGG - chr3.4:6270707-6270726 None:intergenic 30.0%
AGATAAGTCCAACTAAATCA+CGG + chr3.4:6269496-6269515 MS.gene51980:CDS 30.0%
AGATACAAGTAGAATTTCGT+GGG + chr3.4:6270594-6270613 MS.gene51980:CDS 30.0%
ATATTTGTTTGTCAAGTAGG+TGG - chr3.4:6269883-6269902 None:intergenic 30.0%
CATTTCTTCATACAAATCAG+AGG - chr3.4:6271014-6271033 None:intergenic 30.0%
GTCATATTTGTTTGTCAAGT+AGG - chr3.4:6269886-6269905 None:intergenic 30.0%
TTATGAAATTGCAGAATGTG+CGG + chr3.4:6270970-6270989 MS.gene51980:CDS 30.0%
! AACATCACCAAAGTATTCAT+AGG - chr3.4:6269847-6269866 None:intergenic 30.0%
! CTTTTTCTATGAGATTGACA+TGG + chr3.4:6269767-6269786 MS.gene51980:CDS 30.0%
! GTATCTCCATATACTTTTCA+TGG - chr3.4:6270580-6270599 None:intergenic 30.0%
! TCATGTGCAGAATATTTTCT+GGG + chr3.4:6269800-6269819 MS.gene51980:CDS 30.0%
! TTCATGTGCAGAATATTTTC+TGG + chr3.4:6269799-6269818 MS.gene51980:CDS 30.0%
! TTTTATCAGCTGAAGATACT+AGG + chr3.4:6269970-6269989 MS.gene51980:CDS 30.0%
!! AGTATTGTGTTGATTTCAAC+GGG + chr3.4:6270717-6270736 MS.gene51980:CDS 30.0%
!! ATAACGGTTGCTTTAAAGAA+GGG + chr3.4:6269432-6269451 MS.gene51980:CDS 30.0%
!! GACAATTTTGATAAACGATC+AGG + chr3.4:6269560-6269579 MS.gene51980:CDS 30.0%
!!! AGTATGAATGCTTTTTTCGA+TGG + chr3.4:6270389-6270408 MS.gene51980:CDS 30.0%
!!! TATGTGTGGTTGTAGTTTTT+TGG - chr3.4:6270921-6270940 None:intergenic 30.0%
AAAACCACTAGTTGACTGTT+GGG - chr3.4:6271455-6271474 None:intergenic 35.0%
AAATGCAACTGTTATCTCGA+AGG + chr3.4:6270617-6270636 MS.gene51980:CDS 35.0%
AAATGGTCTAGCAAGAAGTT+GGG + chr3.4:6271037-6271056 MS.gene51980:CDS 35.0%
AAGTCTGCCTATGAATACTT+TGG + chr3.4:6269837-6269856 MS.gene51980:CDS 35.0%
AATGTGTGTATGATTCTCTG+CGG + chr3.4:6270207-6270226 MS.gene51980:CDS 35.0%
ACATTACTTCCTATGTCTGA+TGG + chr3.4:6271391-6271410 MS.gene51980:CDS 35.0%
AGGTTGTGTTTCCTAATACT+AGG + chr3.4:6270093-6270112 MS.gene51980:CDS 35.0%
ATCCTACTTTGCTAGAATGA+GGG + chr3.4:6269731-6269750 MS.gene51980:CDS 35.0%
ATGTCGTTACTTGCATCAAT+GGG + chr3.4:6271475-6271494 MS.gene51980:CDS 35.0%
CATTACTTCCTATGTCTGAT+GGG + chr3.4:6271392-6271411 MS.gene51980:CDS 35.0%
CCACACATAGAAAGATTTGA+AGG + chr3.4:6270932-6270951 MS.gene51980:CDS 35.0%
CCTTCAAATCTTTCTATGTG+TGG - chr3.4:6270935-6270954 None:intergenic 35.0%
CGTGGCAAGATAAATTTAGA+CGG - chr3.4:6270845-6270864 None:intergenic 35.0%
CTAAATTTATCTTGCCACGA+TGG + chr3.4:6270846-6270865 MS.gene51980:CDS 35.0%
CTTGTTTCATGGCATATTCA+CGG - chr3.4:6269260-6269279 None:intergenic 35.0%
GAGATACAAGTAGAATTTCG+TGG + chr3.4:6270593-6270612 MS.gene51980:CDS 35.0%
GGATTAAGAATTGGTTGATC+AGG - chr3.4:6271142-6271161 None:intergenic 35.0%
GTGAATATGCCATGAAACAA+GGG + chr3.4:6269259-6269278 MS.gene51980:CDS 35.0%
TAAAACCACTAGTTGACTGT+TGG - chr3.4:6271456-6271475 None:intergenic 35.0%
TATCCTACTTTGCTAGAATG+AGG + chr3.4:6269730-6269749 MS.gene51980:CDS 35.0%
TATGTCGTTACTTGCATCAA+TGG + chr3.4:6271474-6271493 MS.gene51980:CDS 35.0%
TGATGATTGACACCAACAAA+CGG - chr3.4:6269921-6269940 None:intergenic 35.0%
TGATTGCTCAGCTAAGATAA+CGG + chr3.4:6269416-6269435 MS.gene51980:CDS 35.0%
TGTTTCCTAATACTAGGCAT+AGG + chr3.4:6270099-6270118 MS.gene51980:CDS 35.0%
TTGAAATTGTCTCTCGATTG+TGG - chr3.4:6270546-6270565 None:intergenic 35.0%
! ATACTTTTCATGGGTGTACT+CGG - chr3.4:6270570-6270589 None:intergenic 35.0%
! ATCTACATACACCGTTTTAG+AGG + chr3.4:6270661-6270680 MS.gene51980:CDS 35.0%
! ATGGTTTGGGTGAAAATGAT+TGG + chr3.4:6270273-6270292 MS.gene51980:CDS 35.0%
! ATTAGTTTACAGCCACATTG+TGG + chr3.4:6271064-6271083 MS.gene51980:CDS 35.0%
! ATTCTAACTTGTGCAAGAGA+AGG + chr3.4:6269339-6269358 MS.gene51980:CDS 35.0%
! CAATCCATTTTACTAGGTTG+CGG + chr3.4:6269945-6269964 MS.gene51980:CDS 35.0%
! GACAATACTCTCCTCTAAAA+CGG - chr3.4:6270675-6270694 None:intergenic 35.0%
! GTACACCCATGAAAAGTATA+TGG + chr3.4:6270571-6270590 MS.gene51980:CDS 35.0%
! TGAATACCATTTTCGAAGAG+CGG + chr3.4:6270297-6270316 MS.gene51980:CDS 35.0%
! TGCGCATCCTTTCAATTTTT+CGG - chr3.4:6270156-6270175 None:intergenic 35.0%
! TGTTAGATTTTCGTAACCAC+CGG - chr3.4:6269631-6269650 None:intergenic 35.0%
! TGTTTGATGTTTGAGTTCAG+AGG + chr3.4:6270764-6270783 MS.gene51980:CDS 35.0%
! TTAAAACATGATTTCTGGGC+CGG + chr3.4:6270341-6270360 MS.gene51980:CDS 35.0%
! TTCACATTTTTACTCCATCG+TGG - chr3.4:6270863-6270882 None:intergenic 35.0%
! TTGGTGGTATGTTTGATTCA+TGG - chr3.4:6269368-6269387 None:intergenic 35.0%
! TTTCACAATCTTTTCAGTGG+TGG - chr3.4:6271212-6271231 None:intergenic 35.0%
!! ATTTGTTGTTTCAAAGGTCC+CGG - chr3.4:6269163-6269182 None:intergenic 35.0%
!! ATTTTGATAAACGATCAGGC+AGG + chr3.4:6269564-6269583 MS.gene51980:CDS 35.0%
!! GACAGCATTTGTTGTTTCAA+AGG - chr3.4:6269169-6269188 None:intergenic 35.0%
!! GATAACGGTTGCTTTAAAGA+AGG + chr3.4:6269431-6269450 MS.gene51980:CDS 35.0%
!! GTATTGTGTTGATTTCAACG+GGG + chr3.4:6270718-6270737 MS.gene51980:CDS 35.0%
!! TTGCTTTAAAGAAGGGTCTA+TGG + chr3.4:6269439-6269458 MS.gene51980:CDS 35.0%
!! TTGTTGGTGTCAATCATCAT+GGG + chr3.4:6269922-6269941 MS.gene51980:CDS 35.0%
!! TTTGTTGGTGTCAATCATCA+TGG + chr3.4:6269921-6269940 MS.gene51980:CDS 35.0%
!!! GGGTTGATGATTTTGTTGTT+GGG + chr3.4:6270228-6270247 MS.gene51980:CDS 35.0%
!!! TTGATGATTTTGTTGTTGGG+TGG + chr3.4:6270231-6270250 MS.gene51980:CDS 35.0%
AAAACCAAATGTTTCGGTCG+TGG + chr3.4:6271255-6271274 MS.gene51980:CDS 40.0%
AAAGGATGCGCACAATACAA+AGG + chr3.4:6270164-6270183 MS.gene51980:CDS 40.0%
AAGACCGCAACCTAGTAAAA+TGG - chr3.4:6269952-6269971 None:intergenic 40.0%
AAGATACTAGGTCCTTTACC+TGG + chr3.4:6269982-6270001 MS.gene51980:CDS 40.0%
AATTGTAACCGATCAGTGCA+AGG + chr3.4:6270052-6270071 MS.gene51980:CDS 40.0%
ACTAAATCACGGTTGTTTGC+TGG + chr3.4:6269507-6269526 MS.gene51980:CDS 40.0%
AGATTGATATGCATGCACAG+CGG + chr3.4:6269538-6269557 MS.gene51980:CDS 40.0%
AGTAGGCGTGAATTTATCTG+TGG - chr3.4:6269193-6269212 None:intergenic 40.0%
ATGATTGACACCAACAAACG+GGG - chr3.4:6269919-6269938 None:intergenic 40.0%
ATGTGTGTATGATTCTCTGC+GGG + chr3.4:6270208-6270227 MS.gene51980:CDS 40.0%
CAAAAGAAAGACACCTTCTC+GGG + chr3.4:6269682-6269701 MS.gene51980:CDS 40.0%
CAAATGGTCTAGCAAGAAGT+TGG + chr3.4:6271036-6271055 MS.gene51980:CDS 40.0%
CATCCTTTATTAGCCCCTAA+TGG + chr3.4:6269096-6269115 MS.gene51980:CDS 40.0%
CGTGAATATGCCATGAAACA+AGG + chr3.4:6269258-6269277 MS.gene51980:CDS 40.0%
GAGAGATGTCAGAAACTTTG+TGG + chr3.4:6269659-6269678 MS.gene51980:CDS 40.0%
GAGCAATCATGTTTCTTCGT+TGG - chr3.4:6269405-6269424 None:intergenic 40.0%
GATGATTGACACCAACAAAC+GGG - chr3.4:6269920-6269939 None:intergenic 40.0%
GCAAAAGAAAGACACCTTCT+CGG + chr3.4:6269681-6269700 MS.gene51980:CDS 40.0%
GCAAACAACCGTGATTTAGT+TGG - chr3.4:6269507-6269526 None:intergenic 40.0%
GGATGATAGCTTAAACACGA+TGG + chr3.4:6271096-6271115 MS.gene51980:CDS 40.0%
GGATGATCGATCAATATAGG+AGG - chr3.4:6269081-6269100 None:intergenic 40.0%
GGCTATGCAAAATGCAATTC+AGG + chr3.4:6270073-6270092 MS.gene51980:CDS 40.0%
GTTGGATTCGTCTTCAAAGT+TGG - chr3.4:6269387-6269406 None:intergenic 40.0%
TACAAATCAGAGGTCTGACT+AGG - chr3.4:6271004-6271023 None:intergenic 40.0%
TCAAGCACAATCATTCCATG+CGG + chr3.4:6270512-6270531 MS.gene51980:CDS 40.0%
TCTCCATTAGGGGCTAATAA+AGG - chr3.4:6269102-6269121 None:intergenic 40.0%
TGATAGCTTAAACACGATGG+AGG + chr3.4:6271099-6271118 MS.gene51980:CDS 40.0%
TGATCGGTTACAATTCCCAT+TGG - chr3.4:6270047-6270066 None:intergenic 40.0%
TGGTCATCTTAGAGTGAAAG+AGG + chr3.4:6270817-6270836 MS.gene51980:CDS 40.0%
TGTCGTTACTTGCATCAATG+GGG + chr3.4:6271476-6271495 MS.gene51980:CDS 40.0%
TGTTTCGAACAACCAGGTAA+AGG - chr3.4:6269997-6270016 None:intergenic 40.0%
TTACCTGGTTGTTCGAAACA+TGG + chr3.4:6269997-6270016 MS.gene51980:CDS 40.0%
TTCCCTCATTCTAGCAAAGT+AGG - chr3.4:6269736-6269755 None:intergenic 40.0%
TTCCTAATACTAGGCATAGG+TGG + chr3.4:6270102-6270121 MS.gene51980:CDS 40.0%
! AACTCTAAGAAAGGGTCTGA+TGG + chr3.4:6269300-6269319 MS.gene51980:CDS 40.0%
! AGGAATACGAGGCAGATTTT+CGG + chr3.4:6270486-6270505 MS.gene51980:CDS 40.0%
! CATGGGCAATCCATTTTACT+AGG + chr3.4:6269939-6269958 MS.gene51980:CDS 40.0%
! GAATACCATTTTCGAAGAGC+GGG + chr3.4:6270298-6270317 MS.gene51980:CDS 40.0%
!! AGACATTCGCTTTTCGTACT+TGG + chr3.4:6270797-6270816 MS.gene51980:CDS 40.0%
!! ATTCCTTTTCAGCCTTGTCT+TGG - chr3.4:6270472-6270491 None:intergenic 40.0%
!! CCTCTTTGTTGTTGACATTC+CGG - chr3.4:6270363-6270382 None:intergenic 40.0%
!! TCCGTTAAAAGTACCACGTA+CGG + chr3.4:6271159-6271178 MS.gene51980:CDS 40.0%
!! TTAGAGGAGAGTATTGTCTG+TGG + chr3.4:6270677-6270696 MS.gene51980:CDS 40.0%
!!! CGGGTTGATGATTTTGTTGT+TGG + chr3.4:6270227-6270246 MS.gene51980:CDS 40.0%
ACTCCAAGACAAGGCTGAAA+AGG + chr3.4:6270466-6270485 MS.gene51980:CDS 45.0%
ACTTCCACGACCGAAACATT+TGG - chr3.4:6271262-6271281 None:intergenic 45.0%
ATTGTGGAATTTGACCCGCA+TGG - chr3.4:6270530-6270549 None:intergenic 45.0%
CAAGCACAATCATTCCATGC+GGG + chr3.4:6270513-6270532 MS.gene51980:CDS 45.0%
CAAGGCTGAAAAGGAATACG+AGG + chr3.4:6270475-6270494 MS.gene51980:CDS 45.0%
CACCACCTATGCCTAGTATT+AGG - chr3.4:6270107-6270126 None:intergenic 45.0%
CCGGAATGTCAACAACAAAG+AGG + chr3.4:6270360-6270379 MS.gene51980:CDS 45.0%
CCTAATGGAGAGCTAGATGA+CGG + chr3.4:6269111-6269130 MS.gene51980:CDS 45.0%
CTATGAGATTGACATGGACG+AGG + chr3.4:6269773-6269792 MS.gene51980:CDS 45.0%
GAACAAAAGTTCCCGTTCCA+TGG + chr3.4:6269596-6269615 MS.gene51980:CDS 45.0%
GACGTCTTCGAACTAATCGT+CGG + chr3.4:6271182-6271201 MS.gene51980:CDS 45.0%
GCTTGAAACCCATCAGACAT+AGG - chr3.4:6271403-6271422 None:intergenic 45.0%
GGATTCGTCTTCAAAGTTGG+TGG - chr3.4:6269384-6269403 None:intergenic 45.0%
GGTTGTTCGAAACATGGCTA+AGG + chr3.4:6270003-6270022 MS.gene51980:CDS 45.0%
TAAACGATCAGGCAGGTGTA+CGG + chr3.4:6269571-6269590 MS.gene51980:CDS 45.0%
TAGCCATGTTTCGAACAACC+AGG - chr3.4:6270003-6270022 None:intergenic 45.0%
TCATCCCAACAGTCAACTAG+TGG + chr3.4:6271448-6271467 MS.gene51980:CDS 45.0%
TCGGTTACAATTCCCATTGG+AGG - chr3.4:6270044-6270063 None:intergenic 45.0%
TCTTTCCCGCTCTTCGAAAA+TGG - chr3.4:6270306-6270325 None:intergenic 45.0%
TGCATCAATGGGGAAAGATG+TGG + chr3.4:6271486-6271505 MS.gene51980:CDS 45.0%
TTACAGCCACATTGTGGTGT+GGG + chr3.4:6271070-6271089 MS.gene51980:CDS 45.0%
TTTACAGCCACATTGTGGTG+TGG + chr3.4:6271069-6271088 MS.gene51980:CDS 45.0%
TTTCGAAGAGCGGGAAAGAT+GGG + chr3.4:6270307-6270326 MS.gene51980:CDS 45.0%
TTTCGGTCGTGGAAGTAAGT+TGG + chr3.4:6271266-6271285 MS.gene51980:intron 45.0%
! ATGTCATTTGCCCCGTTTGT+TGG + chr3.4:6269906-6269925 MS.gene51980:CDS 45.0%
! CCCGTACGTGGTACTTTTAA+CGG - chr3.4:6271163-6271182 None:intergenic 45.0%
! GATCGCAAACCCTTGTTTCA+TGG - chr3.4:6269271-6269290 None:intergenic 45.0%
! TCTCGAAGGTGTGACTACAT+TGG + chr3.4:6270631-6270650 MS.gene51980:CDS 45.0%
! TTGCATAGCCTTGCACTGAT+CGG - chr3.4:6270063-6270082 None:intergenic 45.0%
! TTTTCGAAGAGCGGGAAAGA+TGG + chr3.4:6270306-6270325 MS.gene51980:CDS 45.0%
!! CCGTTAAAAGTACCACGTAC+GGG + chr3.4:6271160-6271179 MS.gene51980:CDS 45.0%
!! CGTCATCTAGCTCTCCATTA+GGG - chr3.4:6269113-6269132 None:intergenic 45.0%
!! GTCATCTAGCTCTCCATTAG+GGG - chr3.4:6269112-6269131 None:intergenic 45.0%
!! TCTGATGGGTTTCAAGCGTA+CGG + chr3.4:6271406-6271425 MS.gene51980:CDS 45.0%
AAACGATCAGGCAGGTGTAC+GGG + chr3.4:6269572-6269591 MS.gene51980:CDS 50.0%
AGAAAGACACCTTCTCGGGA+AGG + chr3.4:6269686-6269705 MS.gene51980:CDS 50.0%
ATGTCTTCGAGGCCTCCAAT+GGG + chr3.4:6270029-6270048 MS.gene51980:CDS 50.0%
CGGCATCACATACCATGGAA+CGG - chr3.4:6269611-6269630 None:intergenic 50.0%
CGTTCCATGGTATGTGATGC+CGG + chr3.4:6269609-6269628 MS.gene51980:CDS 50.0%
CTAGGCATAGGTGGTGTCTA+TGG + chr3.4:6270111-6270130 MS.gene51980:CDS 50.0%
GGCATCACATACCATGGAAC+GGG - chr3.4:6269610-6269629 None:intergenic 50.0%
GGCTAAGGTGTATGTCTTCG+AGG + chr3.4:6270018-6270037 MS.gene51980:CDS 50.0%
TATGTCTTCGAGGCCTCCAA+TGG + chr3.4:6270028-6270047 MS.gene51980:CDS 50.0%
! CGTGTTGACGTTTGGGATTC+CGG + chr3.4:6269141-6269160 MS.gene51980:CDS 50.0%
! GTGTTGACGTTTGGGATTCC+GGG + chr3.4:6269142-6269161 MS.gene51980:CDS 50.0%
! TGCTGCTCGTGTTGACGTTT+GGG + chr3.4:6269134-6269153 MS.gene51980:CDS 50.0%
!! CCGTCATCTAGCTCTCCATT+AGG - chr3.4:6269114-6269133 None:intergenic 50.0%
ACCACCGGCATCACATACCA+TGG - chr3.4:6269616-6269635 None:intergenic 55.0%
AGACACCTTCTCGGGAAGGA+AGG + chr3.4:6269690-6269709 MS.gene51980:CDS 55.0%
AGCCACATTGTGGTGTGGGA+GGG + chr3.4:6271074-6271093 MS.gene51980:CDS 55.0%
CATCTCCTTCCTTCCCGAGA+AGG - chr3.4:6269698-6269717 None:intergenic 55.0%
CGACAACGCACTCCAAGACA+AGG + chr3.4:6270457-6270476 MS.gene51980:CDS 55.0%
CTTCTCGGGAAGGAAGGAGA+TGG + chr3.4:6269696-6269715 MS.gene51980:CDS 55.0%
TCCATGGTATGTGATGCCGG+TGG + chr3.4:6269612-6269631 MS.gene51980:CDS 55.0%
! GTGCTGCTCGTGTTGACGTT+TGG + chr3.4:6269133-6269152 MS.gene51980:CDS 55.0%
CAGCCACATTGTGGTGTGGG+AGG + chr3.4:6271073-6271092 MS.gene51980:CDS 60.0%
CGGGAAGGAAGGAGATGGCA+GGG + chr3.4:6269701-6269720 MS.gene51980:CDS 60.0%
GCCACATTGTGGTGTGGGAG+GGG + chr3.4:6271075-6271094 MS.gene51980:CDS 60.0%
GTTCGAAGACGTCCCGTACG+TGG - chr3.4:6271175-6271194 None:intergenic 60.0%
TCCCCTCCCACACCACAATG+TGG - chr3.4:6271079-6271098 None:intergenic 60.0%
TCGGGAAGGAAGGAGATGGC+AGG + chr3.4:6269700-6269719 MS.gene51980:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 6269066 6271519 6269066 ID=MS.gene51980
chr3.4 mRNA 6269066 6271519 6269066 ID=MS.gene51980.t1;Parent=MS.gene51980
chr3.4 exon 6269066 6271279 6269066 ID=MS.gene51980.t1.exon1;Parent=MS.gene51980.t1
chr3.4 CDS 6269066 6271279 6269066 ID=cds.MS.gene51980.t1;Parent=MS.gene51980.t1
chr3.4 exon 6271388 6271519 6271388 ID=MS.gene51980.t1.exon2;Parent=MS.gene51980.t1
chr3.4 CDS 6271388 6271519 6271388 ID=cds.MS.gene51980.t1;Parent=MS.gene51980.t1
Gene Sequence

>MS.gene51980

ATGGCTGACTGTCCTCCTATATTGATCGATCATCCTTTATTAGCCCCTAATGGAGAGCTAGATGACGGTGCTGCTCGTGTTGACGTTTGGGATTCCGGGACCTTTGAAACAACAAATGCTGTCGCCACAGATAAATTCACGCCTACTATCAGTATGTCTTTTAAATCGGTTGCAGATTGTAAGTCTTTTTACCGTGAATATGCCATGAAACAAGGGTTTGCGATCAAAACTAGAAACTCTAAGAAAGGGTCTGATGGCATGTTAAGATATTTCATTCTAACTTGTGCAAGAGAAGGTCACCATGAATCAAACATACCACCAACTTTGAAGACGAATCCAACGAAGAAACATGATTGCTCAGCTAAGATAACGGTTGCTTTAAAGAAGGGTCTATGGACTATTTTGTCTTTTAATTCATGTCATAATCATGAGATAAGTCCAACTAAATCACGGTTGTTTGCTGGCAATAAGAAGATTGATATGCATGCACAGCGGACAATTTTGATAAACGATCAGGCAGGTGTACGGGTGAACAAAAGTTCCCGTTCCATGGTATGTGATGCCGGTGGTTACGAAAATCTAACATTTGTGGAGAGAGATGTCAGAAACTTTGTGGCAAAAGAAAGACACCTTCTCGGGAAGGAAGGAGATGGCAGGGCACTTTTATCCTACTTTGCTAGAATGAGGGAATGCAACAAAGACTTTTTCTATGAGATTGACATGGACGAGGACTTTCATGTGCAGAATATTTTCTGGGCTGATGCACGTAGTAAGTCTGCCTATGAATACTTTGGTGATGTTGTCACATTCGATACCACCTACTTGACAAACAAATATGACATGTCATTTGCCCCGTTTGTTGGTGTCAATCATCATGGGCAATCCATTTTACTAGGTTGCGGTCTTTTATCAGCTGAAGATACTAGGTCCTTTACCTGGTTGTTCGAAACATGGCTAAGGTGTATGTCTTCGAGGCCTCCAATGGGAATTGTAACCGATCAGTGCAAGGCTATGCAAAATGCAATTCAGGTTGTGTTTCCTAATACTAGGCATAGGTGGTGTCTATGGCATATAATGAGAAAAATTGCCGAAAAATTGAAAGGATGCGCACAATACAAAGGAATAAAAAATGATATGAAAAAATGTGTGTATGATTCTCTGCGGGTTGATGATTTTGTTGTTGGGTGGACAACATTCATTGAAAAATATGGTTTGGGTGAAAATGATTGGTTGAATACCATTTTCGAAGAGCGGGAAAGATGGGTGCCATGTTATTTAAAACATGATTTCTGGGCCGGAATGTCAACAACAAAGAGGAGTGAAAGTATGAATGCTTTTTTCGATGGTTACATTAATGCAAGAACTTCTCTCAGCGAATTTGTAAAGCAATACGACAACGCACTCCAAGACAAGGCTGAAAAGGAATACGAGGCAGATTTTCGGTCTTCAAGCACAATCATTCCATGCGGGTCAAATTCCACAATCGAGAGACAATTTCAAGCCGAGTACACCCATGAAAAGTATATGGAGATACAAGTAGAATTTCGTGGGAAATGCAACTGTTATCTCGAAGGTGTGACTACATTGGAAATTACATCTACATACACCGTTTTAGAGGAGAGTATTGTCTGTGGTAAACCAAACGAAACTAAGTATTGTGTTGATTTCAACGGGGAAGACAGTAATGTTACGTGCACTTGTTTGATGTTTGAGTTCAGAGGCATTTTGTGTAGACATTCGCTTTTCGTACTTGGTCATCTTAGAGTGAAAGAGGTTCCGTCTAAATTTATCTTGCCACGATGGAGTAAAAATGTGAAGAGAAAATATGCACACATGAAGACAAGTTACAATGCCAAAAAACTACAACCACACATAGAAAGATTTGAAGGTCTTTGCAAGACATTTTATGAAATTGCAGAATGTGCGGCTGAGACACCTAGTCAGACCTCTGATTTGTATGAAGAAATGATCAAATGGTCTAGCAAGAAGTTGGGCAAAATTAGTTTACAGCCACATTGTGGTGTGGGAGGGGATGATAGCTTAAACACGATGGAGGACTCATTATCACAGCAACCTGATCAACCAATTCTTAATCCGTTAAAAGTACCACGTACGGGACGTCTTCGAACTAATCGTCGGTTGTCCACCACTGAAAAGATTGTGAAAAAAAGAAGCAAAATGCAAAGAAAAAAACCAAATGTTTCGGTCGTGGAAGTAAGTTGGTGTTAACATATTATTATTGTGATTACATTTGTTTTTTTAATAGTAATACAGTGTTAATTATGTTAAATGTAATTAATATTTCACTCTGTAATACTACAGTCTACATTACTTCCTATGTCTGATGGGTTTCAAGCGTACGGTGATACGCTTAACTACTTCTCATCCCAACAGTCAACTAGTGGTTTTATGTCGTTACTTGCATCAATGGGGAAAGATGTGGACGCAGCTTAA
Protein sequence

>MS.gene51980.t1

MADCPPILIDHPLLAPNGELDDGAARVDVWDSGTFETTNAVATDKFTPTISMSFKSVADCKSFYREYAMKQGFAIKTRNSKKGSDGMLRYFILTCAREGHHESNIPPTLKTNPTKKHDCSAKITVALKKGLWTILSFNSCHNHEISPTKSRLFAGNKKIDMHAQRTILINDQAGVRVNKSSRSMVCDAGGYENLTFVERDVRNFVAKERHLLGKEGDGRALLSYFARMRECNKDFFYEIDMDEDFHVQNIFWADARSKSAYEYFGDVVTFDTTYLTNKYDMSFAPFVGVNHHGQSILLGCGLLSAEDTRSFTWLFETWLRCMSSRPPMGIVTDQCKAMQNAIQVVFPNTRHRWCLWHIMRKIAEKLKGCAQYKGIKNDMKKCVYDSLRVDDFVVGWTTFIEKYGLGENDWLNTIFEERERWVPCYLKHDFWAGMSTTKRSESMNAFFDGYINARTSLSEFVKQYDNALQDKAEKEYEADFRSSSTIIPCGSNSTIERQFQAEYTHEKYMEIQVEFRGKCNCYLEGVTTLEITSTYTVLEESIVCGKPNETKYCVDFNGEDSNVTCTCLMFEFRGILCRHSLFVLGHLRVKEVPSKFILPRWSKNVKRKYAHMKTSYNAKKLQPHIERFEGLCKTFYEIAECAAETPSQTSDLYEEMIKWSSKKLGKISLQPHCGVGGDDSLNTMEDSLSQQPDQPILNPLKVPRTGRLRTNRRLSTTEKIVKKRSKMQRKKPNVSVVESTLLPMSDGFQAYGDTLNYFSSQQSTSGFMSLLASMGKDVDAA